Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29001.t1 | XP_013460987.1 | 94.1 | 290 | 16 | 1 | 1 | 289 | 1 | 290 | 1.10E-149 | 539.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29001.t1 | Q0WWT7 | 64.7 | 292 | 100 | 1 | 1 | 289 | 1 | 292 | 1.2e-107 | 391.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29001.t1 | A0A072UZZ1 | 94.1 | 290 | 16 | 1 | 1 | 289 | 1 | 290 | 8.1e-150 | 539.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049284 | MS.gene29001 | 0.808984 | 2.37E-50 | -1.69E-46 |
| MS.gene049351 | MS.gene29001 | 0.863027 | 3.34E-64 | -1.69E-46 |
| MS.gene049389 | MS.gene29001 | 0.809463 | 1.87E-50 | -1.69E-46 |
| MS.gene049427 | MS.gene29001 | 0.851589 | 8.04E-61 | -1.69E-46 |
| MS.gene049491 | MS.gene29001 | 0.844593 | 6.87E-59 | -1.69E-46 |
| MS.gene049614 | MS.gene29001 | 0.882197 | 1.27E-70 | -1.69E-46 |
| MS.gene049661 | MS.gene29001 | 0.810847 | 9.40E-51 | -1.69E-46 |
| MS.gene049662 | MS.gene29001 | 0.802657 | 5.06E-49 | -1.69E-46 |
| MS.gene049760 | MS.gene29001 | 0.845184 | 4.76E-59 | -1.69E-46 |
| MS.gene050076 | MS.gene29001 | 0.891368 | 4.23E-74 | -1.69E-46 |
| MS.gene050099 | MS.gene29001 | 0.856291 | 3.55E-62 | -1.69E-46 |
| MS.gene050301 | MS.gene29001 | 0.86867 | 5.49E-66 | -1.69E-46 |
| MS.gene050397 | MS.gene29001 | 0.806962 | 6.38E-50 | -1.69E-46 |
| MS.gene050432 | MS.gene29001 | 0.834749 | 2.50E-56 | -1.69E-46 |
| MS.gene050475 | MS.gene29001 | -0.800075 | 1.71E-48 | -1.69E-46 |
| MS.gene050529 | MS.gene29001 | 0.81511 | 1.09E-51 | -1.69E-46 |
| MS.gene050767 | MS.gene29001 | 0.908518 | 1.57E-81 | -1.69E-46 |
| MS.gene050770 | MS.gene29001 | 0.910846 | 1.19E-82 | -1.69E-46 |
| MS.gene050783 | MS.gene29001 | 0.861838 | 7.74E-64 | -1.69E-46 |
| MS.gene050812 | MS.gene29001 | 0.832807 | 7.66E-56 | -1.69E-46 |
| MS.gene05100 | MS.gene29001 | 0.801709 | 7.92E-49 | -1.69E-46 |
| MS.gene05101 | MS.gene29001 | 0.905689 | 3.29E-80 | -1.69E-46 |
| MS.gene051387 | MS.gene29001 | 0.801358 | 9.35E-49 | -1.69E-46 |
| MS.gene051471 | MS.gene29001 | 0.882688 | 8.45E-71 | -1.69E-46 |
| MS.gene051694 | MS.gene29001 | 0.801632 | 8.22E-49 | -1.69E-46 |
| MS.gene051877 | MS.gene29001 | 0.828523 | 8.58E-55 | -1.69E-46 |
| MS.gene052078 | MS.gene29001 | 0.881701 | 1.93E-70 | -1.69E-46 |
| MS.gene052178 | MS.gene29001 | 0.818388 | 2.01E-52 | -1.69E-46 |
| MS.gene052271 | MS.gene29001 | 0.842162 | 3.06E-58 | -1.69E-46 |
| MS.gene052287 | MS.gene29001 | 0.81811 | 2.33E-52 | -1.69E-46 |
| MS.gene052290 | MS.gene29001 | 0.858847 | 6.22E-63 | -1.69E-46 |
| MS.gene052310 | MS.gene29001 | 0.864565 | 1.11E-64 | -1.69E-46 |
| MS.gene052322 | MS.gene29001 | 0.803855 | 2.86E-49 | -1.69E-46 |
| MS.gene052326 | MS.gene29001 | 0.920486 | 1.20E-87 | -1.69E-46 |
| MS.gene052379 | MS.gene29001 | 0.856094 | 4.06E-62 | -1.69E-46 |
| MS.gene053009 | MS.gene29001 | 0.812414 | 4.29E-51 | -1.69E-46 |
| MS.gene053103 | MS.gene29001 | 0.822518 | 2.27E-53 | -1.69E-46 |
| MS.gene053104 | MS.gene29001 | 0.803283 | 3.75E-49 | -1.69E-46 |
| MS.gene053107 | MS.gene29001 | 0.822798 | 1.95E-53 | -1.69E-46 |
| MS.gene053322 | MS.gene29001 | 0.896315 | 4.15E-76 | -1.69E-46 |
| MS.gene053915 | MS.gene29001 | 0.81079 | 9.67E-51 | -1.69E-46 |
| MS.gene053971 | MS.gene29001 | 0.81351 | 2.47E-51 | -1.69E-46 |
| MS.gene054123 | MS.gene29001 | 0.839041 | 2.01E-57 | -1.69E-46 |
| MS.gene054376 | MS.gene29001 | 0.907476 | 4.86E-81 | -1.69E-46 |
| MS.gene05455 | MS.gene29001 | 0.864821 | 9.22E-65 | -1.69E-46 |
| MS.gene054802 | MS.gene29001 | 0.918152 | 2.21E-86 | -1.69E-46 |
| MS.gene054803 | MS.gene29001 | 0.91869 | 1.14E-86 | -1.69E-46 |
| MS.gene054804 | MS.gene29001 | 0.918576 | 1.31E-86 | -1.69E-46 |
| MS.gene055254 | MS.gene29001 | 0.866588 | 2.56E-65 | -1.69E-46 |
| MS.gene055277 | MS.gene29001 | 0.883387 | 4.69E-71 | -1.69E-46 |
| MS.gene055390 | MS.gene29001 | 0.878242 | 3.29E-69 | -1.69E-46 |
| MS.gene055397 | MS.gene29001 | 0.873052 | 1.98E-67 | -1.69E-46 |
| MS.gene055412 | MS.gene29001 | 0.842441 | 2.58E-58 | -1.69E-46 |
| MS.gene055422 | MS.gene29001 | 0.866369 | 3.00E-65 | -1.69E-46 |
| MS.gene055428 | MS.gene29001 | 0.86182 | 7.84E-64 | -1.69E-46 |
| MS.gene055499 | MS.gene29001 | 0.879341 | 1.35E-69 | -1.69E-46 |
| MS.gene055605 | MS.gene29001 | 0.805414 | 1.35E-49 | -1.69E-46 |
| MS.gene055636 | MS.gene29001 | 0.808914 | 2.45E-50 | -1.69E-46 |
| MS.gene055647 | MS.gene29001 | 0.836602 | 8.50E-57 | -1.69E-46 |
| MS.gene055896 | MS.gene29001 | 0.84722 | 1.33E-59 | -1.69E-46 |
| MS.gene05592 | MS.gene29001 | 0.801229 | 9.94E-49 | -1.69E-46 |
| MS.gene055930 | MS.gene29001 | 0.838222 | 3.27E-57 | -1.69E-46 |
| MS.gene056191 | MS.gene29001 | 0.802955 | 4.39E-49 | -1.69E-46 |
| MS.gene056407 | MS.gene29001 | 0.823877 | 1.09E-53 | -1.69E-46 |
| MS.gene056410 | MS.gene29001 | 0.845718 | 3.41E-59 | -1.69E-46 |
| MS.gene056452 | MS.gene29001 | 0.849241 | 3.67E-60 | -1.69E-46 |
| MS.gene056609 | MS.gene29001 | 0.828938 | 6.80E-55 | -1.69E-46 |
| MS.gene056612 | MS.gene29001 | 0.843678 | 1.21E-58 | -1.69E-46 |
| MS.gene056796 | MS.gene29001 | 0.832656 | 8.35E-56 | -1.69E-46 |
| MS.gene056931 | MS.gene29001 | 0.800991 | 1.11E-48 | -1.69E-46 |
| MS.gene056933 | MS.gene29001 | 0.801548 | 8.55E-49 | -1.69E-46 |
| MS.gene056935 | MS.gene29001 | 0.80283 | 4.66E-49 | -1.69E-46 |
| MS.gene057011 | MS.gene29001 | 0.875957 | 2.05E-68 | -1.69E-46 |
| MS.gene05702 | MS.gene29001 | 0.817105 | 3.92E-52 | -1.69E-46 |
| MS.gene057123 | MS.gene29001 | 0.8467 | 1.84E-59 | -1.69E-46 |
| MS.gene057129 | MS.gene29001 | 0.872242 | 3.70E-67 | -1.69E-46 |
| MS.gene057146 | MS.gene29001 | 0.848898 | 4.57E-60 | -1.69E-46 |
| MS.gene057295 | MS.gene29001 | 0.855658 | 5.44E-62 | -1.69E-46 |
| MS.gene05733 | MS.gene29001 | 0.813276 | 2.78E-51 | -1.69E-46 |
| MS.gene057416 | MS.gene29001 | 0.804847 | 1.77E-49 | -1.69E-46 |
| MS.gene057439 | MS.gene29001 | 0.816531 | 5.27E-52 | -1.69E-46 |
| MS.gene058002 | MS.gene29001 | 0.817518 | 3.16E-52 | -1.69E-46 |
| MS.gene058019 | MS.gene29001 | 0.816398 | 5.65E-52 | -1.69E-46 |
| MS.gene058082 | MS.gene29001 | 0.8053 | 1.43E-49 | -1.69E-46 |
| MS.gene05811 | MS.gene29001 | 0.831724 | 1.42E-55 | -1.69E-46 |
| MS.gene058233 | MS.gene29001 | 0.834958 | 2.22E-56 | -1.69E-46 |
| MS.gene058293 | MS.gene29001 | 0.886784 | 2.53E-72 | -1.69E-46 |
| MS.gene058323 | MS.gene29001 | 0.821104 | 4.82E-53 | -1.69E-46 |
| MS.gene058660 | MS.gene29001 | 0.897885 | 9.11E-77 | -1.69E-46 |
| MS.gene058903 | MS.gene29001 | 0.81688 | 4.40E-52 | -1.69E-46 |
| MS.gene058993 | MS.gene29001 | 0.827596 | 1.43E-54 | -1.69E-46 |
| MS.gene05907 | MS.gene29001 | 0.829401 | 5.26E-55 | -1.69E-46 |
| MS.gene059326 | MS.gene29001 | 0.877919 | 4.27E-69 | -1.69E-46 |
| MS.gene059518 | MS.gene29001 | 0.82733 | 1.66E-54 | -1.69E-46 |
| MS.gene059536 | MS.gene29001 | 0.86802 | 8.90E-66 | -1.69E-46 |
| MS.gene059597 | MS.gene29001 | 0.848408 | 6.25E-60 | -1.69E-46 |
| MS.gene05959 | MS.gene29001 | 0.824194 | 9.21E-54 | -1.69E-46 |
| MS.gene059676 | MS.gene29001 | 0.857156 | 1.98E-62 | -1.69E-46 |
| MS.gene059688 | MS.gene29001 | 0.805298 | 1.43E-49 | -1.69E-46 |
| MS.gene059692 | MS.gene29001 | 0.820304 | 7.36E-53 | -1.69E-46 |
| MS.gene059695 | MS.gene29001 | 0.824116 | 9.61E-54 | -1.69E-46 |
| MS.gene059708 | MS.gene29001 | 0.807893 | 4.05E-50 | -1.69E-46 |
| MS.gene059858 | MS.gene29001 | 0.818638 | 1.77E-52 | -1.69E-46 |
| MS.gene059894 | MS.gene29001 | 0.842601 | 2.34E-58 | -1.69E-46 |
| MS.gene059960 | MS.gene29001 | 0.913717 | 4.45E-84 | -1.69E-46 |
| MS.gene059974 | MS.gene29001 | 0.807724 | 4.40E-50 | -1.69E-46 |
| MS.gene060005 | MS.gene29001 | 0.83077 | 2.44E-55 | -1.69E-46 |
| MS.gene060193 | MS.gene29001 | 0.80319 | 3.92E-49 | -1.69E-46 |
| MS.gene06037 | MS.gene29001 | 0.812433 | 4.25E-51 | -1.69E-46 |
| MS.gene060559 | MS.gene29001 | 0.807148 | 5.82E-50 | -1.69E-46 |
| MS.gene060804 | MS.gene29001 | 0.800251 | 1.57E-48 | -1.69E-46 |
| MS.gene060818 | MS.gene29001 | 0.820135 | 8.05E-53 | -1.69E-46 |
| MS.gene06090 | MS.gene29001 | 0.837349 | 5.48E-57 | -1.69E-46 |
| MS.gene061049 | MS.gene29001 | 0.813088 | 3.05E-51 | -1.69E-46 |
| MS.gene061150 | MS.gene29001 | 0.802877 | 4.55E-49 | -1.69E-46 |
| MS.gene061200 | MS.gene29001 | 0.898538 | 4.81E-77 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29001.t1 | MTR_3g075540 | 96.207 | 290 | 10 | 1 | 1 | 289 | 1 | 290 | 0.0 | 573 |
| MS.gene29001.t1 | MTR_4g015860 | 38.509 | 161 | 97 | 2 | 79 | 237 | 52 | 212 | 2.78e-29 | 111 |
| MS.gene29001.t1 | MTR_7g092820 | 27.097 | 155 | 113 | 0 | 84 | 238 | 46 | 200 | 3.54e-14 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29001.t1 | AT4G24750 | 65.529 | 293 | 96 | 3 | 1 | 289 | 1 | 292 | 4.68e-143 | 404 |
| MS.gene29001.t1 | AT3G08920 | 38.125 | 160 | 97 | 2 | 79 | 236 | 39 | 198 | 2.78e-26 | 103 |
| MS.gene29001.t1 | AT2G42220 | 30.159 | 189 | 110 | 3 | 45 | 233 | 31 | 197 | 5.78e-19 | 84.0 |
Find 80 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAGCTTCCCATCTCTTTC+TGG | 0.133810 | 3.1:+62771954 | None:intergenic |
| AACAATTAGTTCTGCATCTT+TGG | 0.158493 | 3.1:+62770437 | None:intergenic |
| GTTGCCGATGCATTATTTAT+TGG | 0.202866 | 3.1:-62768717 | MS.gene29001:CDS |
| TTTATTGGCGCTCAGCAAAT+TGG | 0.243390 | 3.1:-62768702 | MS.gene29001:CDS |
| CCGGTTACACAAACCTGTTT+TGG | 0.266059 | 3.1:-62770117 | MS.gene29001:CDS |
| ACAATTAGTTCTGCATCTTT+GGG | 0.290043 | 3.1:+62770438 | None:intergenic |
| CCTCTTAAGTTTGCTGGAAT+TGG | 0.299694 | 3.1:-62769921 | MS.gene29001:CDS |
| TGCTGCAGCCAAGGAAGGTT+GGG | 0.307164 | 3.1:-62768865 | MS.gene29001:CDS |
| CCAAAACAGGTTTGTGTAAC+CGG | 0.332922 | 3.1:+62770117 | None:intergenic |
| TCAGCGCCTCTTAAGTTTGC+TGG | 0.341434 | 3.1:-62769927 | MS.gene29001:CDS |
| GAGCTCACCTCAGTCCCTTC+TGG | 0.353437 | 3.1:+62770409 | None:intergenic |
| CCATCATCGACATTGAATAT+TGG | 0.361064 | 3.1:+62770746 | None:intergenic |
| GGGAACTTCTCCGCAACTTT+GGG | 0.366253 | 3.1:+62770459 | None:intergenic |
| GCAAATTGGGCGCTATCTTC+AGG | 0.376324 | 3.1:-62768688 | MS.gene29001:CDS |
| TGCTGGAATTGGTGGTGTTT+CGG | 0.379254 | 3.1:-62769910 | MS.gene29001:CDS |
| TTCAACTAGACAGAAGTCTA+TGG | 0.385292 | 3.1:-62772129 | MS.gene29001:intron |
| GGTGGTGTTTCGGAATTCCT+TGG | 0.414207 | 3.1:-62769900 | MS.gene29001:CDS |
| CTTAAGTTTGCTGGAATTGG+TGG | 0.419134 | 3.1:-62769918 | MS.gene29001:CDS |
| AACCTTGTTGTGTTCATTTG+AGG | 0.419393 | 3.1:+62771162 | None:intergenic |
| TTATTGGCGCTCAGCAAATT+GGG | 0.419491 | 3.1:-62768701 | MS.gene29001:CDS |
| TCTGTATCCCCAACCTTCCT+TGG | 0.420887 | 3.1:+62768857 | None:intergenic |
| GGGGAACTTCTCCGCAACTT+TGG | 0.424721 | 3.1:+62770458 | None:intergenic |
| AGCCTCCTTGAACCCAAAAC+AGG | 0.429532 | 3.1:+62770104 | None:intergenic |
| CTGCTGCAGCCAAGGAAGGT+TGG | 0.434380 | 3.1:-62768866 | MS.gene29001:CDS |
| CTGCATATCCAGCTTCCCTT+GGG | 0.434527 | 3.1:+62771221 | None:intergenic |
| GGCGCTATCTTCAGGAGATT+AGG | 0.442319 | 3.1:-62768680 | MS.gene29001:CDS |
| AGAAGAAGGACGGTGTTGTA+AGG | 0.442401 | 3.1:+62772151 | None:intergenic |
| GTAGGTGTTGGTGTTGGAAT+TGG | 0.442509 | 3.1:+62772214 | None:intergenic |
| ACTGCATATCCAGCTTCCCT+TGG | 0.444447 | 3.1:+62771220 | None:intergenic |
| ATTGAAGCAAGTCAGGGATA+TGG | 0.444913 | 3.1:-62771983 | MS.gene29001:CDS |
| ACCTTGTTGTGTTCATTTGA+GGG | 0.445197 | 3.1:+62771163 | None:intergenic |
| ACAAGCCCCTTCTTGATGTT+CGG | 0.445700 | 3.1:-62771186 | MS.gene29001:CDS |
| GACATTGAATATTGGAATCC+AGG | 0.449682 | 3.1:+62770754 | None:intergenic |
| GTTCTTACCCCAAGGGAAGC+TGG | 0.464181 | 3.1:-62771229 | MS.gene29001:CDS |
| CCAATTCCAGCAAACTTAAG+AGG | 0.465822 | 3.1:+62769921 | None:intergenic |
| GTGGTGTTTCGGAATTCCTT+GGG | 0.488639 | 3.1:-62769899 | MS.gene29001:intron |
| CAGAAAGAGATGGGAAGCTC+TGG | 0.490533 | 3.1:-62771953 | MS.gene29001:intron |
| CCAATATTCAATGTCGATGA+TGG | 0.493249 | 3.1:-62770746 | MS.gene29001:CDS |
| TGTAACCATAGTATCTCAAT+GGG | 0.513701 | 3.1:+62768656 | None:intergenic |
| ACAAAGAGCTGCTGCAGCCA+AGG | 0.514373 | 3.1:-62768874 | MS.gene29001:CDS |
| GGAATTGGTAACAGTGATTG+TGG | 0.521328 | 3.1:+62772229 | None:intergenic |
| GGCTGCTGCCAGAAAGAGAT+GGG | 0.527321 | 3.1:-62771962 | MS.gene29001:CDS |
| GAATTGGTAACAGTGATTGT+GGG | 0.531813 | 3.1:+62772230 | None:intergenic |
| CTTTGATGCTGCTGAAGAAG+AGG | 0.535812 | 3.1:-62770083 | MS.gene29001:intron |
| TAGATGTTGGAACCATTCCC+AGG | 0.536270 | 3.1:-62770721 | MS.gene29001:CDS |
| GGTAACAGTGATTGTGGGAA+GGG | 0.538152 | 3.1:+62772235 | None:intergenic |
| TGTTATGAACAGGAGGTTGG+TGG | 0.549582 | 3.1:-62770609 | MS.gene29001:intron |
| GTCGATGATGGTCTAGATGT+TGG | 0.552986 | 3.1:-62770734 | MS.gene29001:CDS |
| CTAATTGTTGCATGCCAGAA+GGG | 0.553912 | 3.1:-62770423 | MS.gene29001:CDS |
| TGGTAACAGTGATTGTGGGA+AGG | 0.563931 | 3.1:+62772234 | None:intergenic |
| TTGAGGGCCGAACATCAAGA+AGG | 0.565178 | 3.1:+62771179 | None:intergenic |
| CATGGGTGAAAGGTTCAACC+TGG | 0.567974 | 3.1:-62770772 | MS.gene29001:CDS |
| TTCTGTCTAGTTGAAGAAGA+AGG | 0.568939 | 3.1:+62772137 | None:intergenic |
| AGAGCTGCTGCAGCCAAGGA+AGG | 0.571203 | 3.1:-62768870 | MS.gene29001:CDS |
| CAATTAGTTCTGCATCTTTG+GGG | 0.572471 | 3.1:+62770439 | None:intergenic |
| AGCGCCAATAAATAATGCAT+CGG | 0.573957 | 3.1:+62768713 | None:intergenic |
| TGAACAGGAGGTTGGTGGAG+TGG | 0.574736 | 3.1:-62770604 | MS.gene29001:intron |
| AGAAATGTAGGTGTTGGTGT+TGG | 0.575274 | 3.1:+62772208 | None:intergenic |
| ACTTAGAGAAATGTAGGTGT+TGG | 0.580172 | 3.1:+62772202 | None:intergenic |
| AAATTAAGGTTCTTACCCCA+AGG | 0.581254 | 3.1:-62771237 | MS.gene29001:CDS |
| TGAGGGCCGAACATCAAGAA+GGG | 0.582614 | 3.1:+62771180 | None:intergenic |
| ACTAATTGTTGCATGCCAGA+AGG | 0.587081 | 3.1:-62770424 | MS.gene29001:CDS |
| AGCGGCACTTAGAGAAATGT+AGG | 0.593525 | 3.1:+62772196 | None:intergenic |
| GCTGCAGCCAAGGAAGGTTG+GGG | 0.594915 | 3.1:-62768864 | MS.gene29001:CDS |
| AATTAAGGTTCTTACCCCAA+GGG | 0.596376 | 3.1:-62771236 | MS.gene29001:CDS |
| TGGCTGCTGCCAGAAAGAGA+TGG | 0.598638 | 3.1:-62771963 | MS.gene29001:CDS |
| GAGCAGGATCTTGTCGTGGA+GGG | 0.602986 | 3.1:-62769951 | MS.gene29001:intron |
| TGATGTTATGAACAGGAGGT+TGG | 0.608404 | 3.1:-62770612 | MS.gene29001:intron |
| TGTGAACTACTATATAATGC+CGG | 0.608880 | 3.1:-62770136 | MS.gene29001:CDS |
| GGAGCAGGATCTTGTCGTGG+AGG | 0.618802 | 3.1:-62769952 | MS.gene29001:intron |
| CTCGTTCTTACCCAAAGTTG+CGG | 0.625365 | 3.1:-62770469 | MS.gene29001:CDS |
| GAGGGCCGAACATCAAGAAG+GGG | 0.626090 | 3.1:+62771181 | None:intergenic |
| GTCTAGTTGAAGAAGAAGGA+CGG | 0.638770 | 3.1:+62772141 | None:intergenic |
| GCCCTCAAATGAACACAACA+AGG | 0.642119 | 3.1:-62771164 | MS.gene29001:intron |
| GAGTGAGGCATAATTAGTAG+CGG | 0.656820 | 3.1:+62772178 | None:intergenic |
| TGCATATCCAGCTTCCCTTG+GGG | 0.664362 | 3.1:+62771222 | None:intergenic |
| GTGTTGTAAGGAAGAGAGTG+AGG | 0.671205 | 3.1:+62772163 | None:intergenic |
| TGTGGAGCAGGATCTTGTCG+TGG | 0.697794 | 3.1:-62769955 | MS.gene29001:intron |
| TTGCATGCCAGAAGGGACTG+AGG | 0.715447 | 3.1:-62770416 | MS.gene29001:intron |
| TACTTGTCAAAAGACAGTGT+AGG | 0.751162 | 3.1:+62770577 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAATCACCA+TGG | + | chr3.1:62771377-62771396 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAAATCACCAT+GGG | + | chr3.1:62771376-62771395 | None:intergenic | 15.0% |
| !! | ATGTTAATAACTATCAATTT+GGG | - | chr3.1:62771492-62771511 | MS.gene29001:intron | 15.0% |
| !! | TTAATAGAATCAAATGTATA+AGG | + | chr3.1:62769999-62770018 | None:intergenic | 15.0% |
| !!! | AAAATTACTTTATTGTTGTT+TGG | - | chr3.1:62771301-62771320 | MS.gene29001:intron | 15.0% |
| !!! | AAATTACTTTATTGTTGTTT+GGG | - | chr3.1:62771302-62771321 | MS.gene29001:intron | 15.0% |
| !!! | CATTTCATTTTTTAAATCTT+TGG | - | chr3.1:62770644-62770663 | MS.gene29001:intron | 15.0% |
| !!! | TTTTAAACATCTTATTGTTA+TGG | - | chr3.1:62769891-62769910 | MS.gene29001:intron | 15.0% |
| !! | AAACAATTTCAATGACAAAA+GGG | - | chr3.1:62771462-62771481 | MS.gene29001:intron | 20.0% |
| !! | AGACAAATATTAGAAATTAG+TGG | - | chr3.1:62769420-62769439 | MS.gene29001:intron | 20.0% |
| !! | ATATTGTAGCATTAGAAATT+AGG | + | chr3.1:62771077-62771096 | None:intergenic | 20.0% |
| !! | GAAAATAAAAATAACTTCTC+TGG | - | chr3.1:62770918-62770937 | MS.gene29001:intron | 20.0% |
| !! | GATGTTAATAACTATCAATT+TGG | - | chr3.1:62771491-62771510 | MS.gene29001:intron | 20.0% |
| !! | TAAACAATTTCAATGACAAA+AGG | - | chr3.1:62771461-62771480 | MS.gene29001:intron | 20.0% |
| !! | TATAAATGTAATGAAAGAGT+CGG | + | chr3.1:62770263-62770282 | None:intergenic | 20.0% |
| !! | TATCATGATGAATTCTAATT+TGG | - | chr3.1:62771094-62771113 | MS.gene29001:intron | 20.0% |
| !!! | AAAATCACAAATTTTGCTAT+GGG | - | chr3.1:62770221-62770240 | MS.gene29001:intron | 20.0% |
| !!! | AATCTAATAGTGTTTGTTAT+TGG | - | chr3.1:62769548-62769567 | MS.gene29001:intron | 20.0% |
| !!! | AATTACTTTATTGTTGTTTG+GGG | - | chr3.1:62771303-62771322 | MS.gene29001:intron | 20.0% |
| !!! | ATCTTTATTTTTTCATATGC+TGG | - | chr3.1:62771422-62771441 | MS.gene29001:intron | 20.0% |
| !!! | CAATTACCAAATACATTTTA+AGG | + | chr3.1:62770594-62770613 | None:intergenic | 20.0% |
| !!! | CTTAAAATGTATTTGGTAAT+TGG | - | chr3.1:62770592-62770611 | MS.gene29001:CDS | 20.0% |
| !!! | TCAGAACAATTTTAAAAGTT+TGG | - | chr3.1:62771981-62772000 | MS.gene29001:CDS | 20.0% |
| !!! | TTACTAATCAATTTTGAGAT+CGG | - | chr3.1:62771603-62771622 | MS.gene29001:intron | 20.0% |
| ! | AGAAAATGAAATGCTAGTTA+TGG | - | chr3.1:62769177-62769196 | MS.gene29001:intron | 25.0% |
| ! | AGAAATTCAGAAAACTGAAA+TGG | + | chr3.1:62770871-62770890 | None:intergenic | 25.0% |
| ! | ATACTTCTCACAAGTTTAAT+TGG | - | chr3.1:62771249-62771268 | MS.gene29001:CDS | 25.0% |
| ! | ATTCAATTCAACCAAAAACT+AGG | + | chr3.1:62769307-62769326 | None:intergenic | 25.0% |
| ! | CATACAATAGATTAATTACC+AGG | + | chr3.1:62772105-62772124 | None:intergenic | 25.0% |
| ! | CCATTTCCTTAAAATGTATT+TGG | - | chr3.1:62770585-62770604 | MS.gene29001:CDS | 25.0% |
| ! | GAAATTCAGAAAACTGAAAT+GGG | + | chr3.1:62770870-62770889 | None:intergenic | 25.0% |
| ! | GCTGTACTCTAATTAAATTT+AGG | - | chr3.1:62770896-62770915 | MS.gene29001:intron | 25.0% |
| ! | TAAGGTTTACATTGTCTATT+TGG | + | chr3.1:62770722-62770741 | None:intergenic | 25.0% |
| ! | TATATCACCAACAAATATCT+AGG | + | chr3.1:62769338-62769357 | None:intergenic | 25.0% |
| ! | TTAAGTTTGTGCAATTACAA+TGG | + | chr3.1:62771889-62771908 | None:intergenic | 25.0% |
| ! | TTCTTATCCTAGATATTTGT+TGG | - | chr3.1:62769328-62769347 | MS.gene29001:intron | 25.0% |
| ! | TTGGTTCAATCAAATTATTG+TGG | - | chr3.1:62770663-62770682 | MS.gene29001:intron | 25.0% |
| ! | TTTGACATCACAAATTTGAA+TGG | - | chr3.1:62772153-62772172 | MS.gene29001:CDS | 25.0% |
| !! | ACTTGTTAAATGATTAGAGA+TGG | + | chr3.1:62770694-62770713 | None:intergenic | 25.0% |
| !! | GAAAATCACAAATTTTGCTA+TGG | - | chr3.1:62770220-62770239 | MS.gene29001:intron | 25.0% |
| !!! | CCAAATACATTTTAAGGAAA+TGG | + | chr3.1:62770588-62770607 | None:intergenic | 25.0% |
| !!! | GTTGGTGATATAGATTATTT+GGG | - | chr3.1:62769346-62769365 | MS.gene29001:intron | 25.0% |
| !!! | TGTTGGTGATATAGATTATT+TGG | - | chr3.1:62769345-62769364 | MS.gene29001:intron | 25.0% |
| !!! | TTGGATGACTGTATTTTAAT+GGG | - | chr3.1:62769623-62769642 | MS.gene29001:intron | 25.0% |
| !!! | TTTATTTTTTCCTAGATCGA+CGG | - | chr3.1:62771521-62771540 | MS.gene29001:intron | 25.0% |
| !!! | TTTGGATGACTGTATTTTAA+TGG | - | chr3.1:62769622-62769641 | MS.gene29001:intron | 25.0% |
| AAATGTGACTCAAAACACAA+GGG | + | chr3.1:62770629-62770648 | None:intergenic | 30.0% | |
| AAATTAGGAAGTAAGGTTAG+AGG | + | chr3.1:62771062-62771081 | None:intergenic | 30.0% | |
| AACATCTTATTGTTATGGTC+AGG | - | chr3.1:62769896-62769915 | MS.gene29001:intron | 30.0% | |
| AACTGCAATTCTTATGTCAT+TGG | - | chr3.1:62771661-62771680 | MS.gene29001:intron | 30.0% | |
| AAGAAACGAAAATCTTCACT+TGG | + | chr3.1:62769087-62769106 | None:intergenic | 30.0% | |
| AAGATCACAACAATAATGTG+TGG | + | chr3.1:62770099-62770118 | None:intergenic | 30.0% | |
| ACTGCAATATTATTTCCAGT+TGG | - | chr3.1:62772014-62772033 | MS.gene29001:CDS | 30.0% | |
| ACTGCAATTCTTATGTCATT+GGG | - | chr3.1:62771662-62771681 | MS.gene29001:intron | 30.0% | |
| GATCGTTTATCATGAATTCA+TGG | + | chr3.1:62771726-62771745 | None:intergenic | 30.0% | |
| GCATTAGAAATTAGGAAGTA+AGG | + | chr3.1:62771069-62771088 | None:intergenic | 30.0% | |
| TATGTGCAAGTGCAATATAT+TGG | + | chr3.1:62769820-62769839 | None:intergenic | 30.0% | |
| TGTGAACTACTATATAATGC+CGG | - | chr3.1:62770783-62770802 | MS.gene29001:intron | 30.0% | |
| TTAGTTTAAGAGTTCTCTGA+TGG | - | chr3.1:62771121-62771140 | MS.gene29001:intron | 30.0% | |
| TTCTCACAAGTTTAATTGGT+TGG | - | chr3.1:62771253-62771272 | MS.gene29001:CDS | 30.0% | |
| TTTAGTTAGTTACCTCTAGT+AGG | - | chr3.1:62769843-62769862 | MS.gene29001:intron | 30.0% | |
| ! | AATCTGGAATACATAACACA+TGG | + | chr3.1:62771702-62771721 | None:intergenic | 30.0% |
| ! | AGAAGTATAATGTTCTAGTG+TGG | + | chr3.1:62771237-62771256 | None:intergenic | 30.0% |
| ! | AGCAAAATTTGTGATTTTCC+TGG | + | chr3.1:62770219-62770238 | None:intergenic | 30.0% |
| ! | ATGTGTTTTCACAGAGTAAA+TGG | - | chr3.1:62769279-62769298 | MS.gene29001:intron | 30.0% |
| ! | ATTTTGAATTGAAGCAAGTC+AGG | - | chr3.1:62768929-62768948 | MS.gene29001:intron | 30.0% |
| ! | GATTATTTGGGATTTCTCAA+AGG | - | chr3.1:62769358-62769377 | MS.gene29001:intron | 30.0% |
| ! | GCAAAATTTGTGATTTTCCT+GGG | + | chr3.1:62770218-62770237 | None:intergenic | 30.0% |
| ! | TAGCATGTAGTTTCATCTTT+TGG | + | chr3.1:62771581-62771600 | None:intergenic | 30.0% |
| ! | TTTTGAATTGAAGCAAGTCA+GGG | - | chr3.1:62768930-62768949 | MS.gene29001:intron | 30.0% |
| !! | AACAATTAGTTCTGCATCTT+TGG | + | chr3.1:62770485-62770504 | None:intergenic | 30.0% |
| !! | ACAATTAGTTCTGCATCTTT+GGG | + | chr3.1:62770484-62770503 | None:intergenic | 30.0% |
| !! | TTTGACTTGATGTTATGAAC+AGG | - | chr3.1:62770300-62770319 | MS.gene29001:intron | 30.0% |
| !!! | TGGATGACTGTATTTTAATG+GGG | - | chr3.1:62769624-62769643 | MS.gene29001:intron | 30.0% |
| !!! | TTGAAGGAGTTTTAAGCAAT+AGG | + | chr3.1:62769475-62769494 | None:intergenic | 30.0% |
| AAATTAAGGTTCTTACCCCA+AGG | - | chr3.1:62769682-62769701 | MS.gene29001:intron | 35.0% | |
| AATGTGACTCAAAACACAAG+GGG | + | chr3.1:62770628-62770647 | None:intergenic | 35.0% | |
| AATTAAGGTTCTTACCCCAA+GGG | - | chr3.1:62769683-62769702 | MS.gene29001:intron | 35.0% | |
| ACAACATTCTTCTTCTGCAA+AGG | + | chr3.1:62768886-62768905 | None:intergenic | 35.0% | |
| ACTTAGAGAAATGTAGGTGT+TGG | + | chr3.1:62768720-62768739 | None:intergenic | 35.0% | |
| AGCGCCAATAAATAATGCAT+CGG | + | chr3.1:62772209-62772228 | None:intergenic | 35.0% | |
| ATCAGGTTCAGAACAACATA+AGG | + | chr3.1:62770740-62770759 | None:intergenic | 35.0% | |
| ATCATGAATTCATGGCAATC+TGG | + | chr3.1:62771718-62771737 | None:intergenic | 35.0% | |
| ATTCGATCCAGAAACTAACA+TGG | + | chr3.1:62769446-62769465 | None:intergenic | 35.0% | |
| CAATTTCAATGACAAAAGGG+AGG | - | chr3.1:62771465-62771484 | MS.gene29001:intron | 35.0% | |
| CCAATATTCAATGTCGATGA+TGG | - | chr3.1:62770173-62770192 | MS.gene29001:intron | 35.0% | |
| CCATCATCGACATTGAATAT+TGG | + | chr3.1:62770176-62770195 | None:intergenic | 35.0% | |
| GAAATGTGACTCAAAACACA+AGG | + | chr3.1:62770630-62770649 | None:intergenic | 35.0% | |
| GAAGAATGTTCATAGATCGT+TGG | - | chr3.1:62771863-62771882 | MS.gene29001:intron | 35.0% | |
| GACATTGAATATTGGAATCC+AGG | + | chr3.1:62770168-62770187 | None:intergenic | 35.0% | |
| GCTCAGGGATGAAAAAATTA+AGG | - | chr3.1:62769668-62769687 | MS.gene29001:intron | 35.0% | |
| GTGAGCTCTATACATTCAAT+AGG | - | chr3.1:62770525-62770544 | MS.gene29001:intron | 35.0% | |
| GTTGCCGATGCATTATTTAT+TGG | - | chr3.1:62772202-62772221 | MS.gene29001:CDS | 35.0% | |
| TACTTGTCAAAAGACAGTGT+AGG | + | chr3.1:62770345-62770364 | None:intergenic | 35.0% | |
| TGAATGGTTATTGCGTAGAT+TGG | - | chr3.1:62772169-62772188 | MS.gene29001:CDS | 35.0% | |
| TTCAACTAGACAGAAGTCTA+TGG | - | chr3.1:62768790-62768809 | MS.gene29001:intron | 35.0% | |
| TTCTGTCTAGTTGAAGAAGA+AGG | + | chr3.1:62768785-62768804 | None:intergenic | 35.0% | |
| ! | AACCTTGTTGTGTTCATTTG+AGG | + | chr3.1:62769760-62769779 | None:intergenic | 35.0% |
| ! | ACCTTGTTGTGTTCATTTGA+GGG | + | chr3.1:62769759-62769778 | None:intergenic | 35.0% |
| ! | ATGTAGTTTCATCTTTTGGC+AGG | + | chr3.1:62771577-62771596 | None:intergenic | 35.0% |
| ! | ATTTGTGATTTTCCTGGGAA+TGG | + | chr3.1:62770213-62770232 | None:intergenic | 35.0% |
| ! | GAATTGGTAACAGTGATTGT+GGG | + | chr3.1:62768692-62768711 | None:intergenic | 35.0% |
| ! | GGGATACAGATTAGTGTTTT+CGG | - | chr3.1:62772075-62772094 | MS.gene29001:intron | 35.0% |
| ! | TCATTTTCTCTCGACCATAA+TGG | + | chr3.1:62769166-62769185 | None:intergenic | 35.0% |
| ! | TCTTTTTGCTTACGATATGC+AGG | - | chr3.1:62771927-62771946 | MS.gene29001:intron | 35.0% |
| ! | TTAATCCTTTTGGTCTGTTG+TGG | - | chr3.1:62770946-62770965 | MS.gene29001:intron | 35.0% |
| ! | TTAGTTTCTGGATCGAATCT+GGG | - | chr3.1:62769448-62769467 | MS.gene29001:intron | 35.0% |
| !! | AGTAAATGGAGCCTAGTTTT+TGG | - | chr3.1:62769293-62769312 | MS.gene29001:intron | 35.0% |
| !! | CAATTAGTTCTGCATCTTTG+GGG | + | chr3.1:62770483-62770502 | None:intergenic | 35.0% |
| !! | GCTCTTTTTGCATGTTTTGA+AGG | - | chr3.1:62770124-62770143 | MS.gene29001:CDS | 35.0% |
| !!! | GGATGACTGTATTTTAATGG+GGG | - | chr3.1:62769625-62769644 | MS.gene29001:intron | 35.0% |
| !!! | TTTGCATGTTTTGAAGGCAT+GGG | - | chr3.1:62770130-62770149 | MS.gene29001:CDS | 35.0% |
| !!! | TTTTGCATGTTTTGAAGGCA+TGG | - | chr3.1:62770129-62770148 | MS.gene29001:CDS | 35.0% |
| ACTAATTGTTGCATGCCAGA+AGG | - | chr3.1:62770495-62770514 | MS.gene29001:intron | 40.0% | |
| ACTAGACAGAAGTCTATGGT+TGG | - | chr3.1:62768794-62768813 | MS.gene29001:intron | 40.0% | |
| ACTCTTGAAGCGAACCATTA+TGG | - | chr3.1:62769149-62769168 | MS.gene29001:intron | 40.0% | |
| AGTTAGTTACCTCTAGTAGG+AGG | - | chr3.1:62769846-62769865 | MS.gene29001:intron | 40.0% | |
| ATTGAAGCAAGTCAGGGATA+TGG | - | chr3.1:62768936-62768955 | MS.gene29001:intron | 40.0% | |
| CAAGTGCAATATATTGGCCA+AGG | + | chr3.1:62769814-62769833 | None:intergenic | 40.0% | |
| CCAAAACAGGTTTGTGTAAC+CGG | + | chr3.1:62770805-62770824 | None:intergenic | 40.0% | |
| CCAATTCCAGCAAACTTAAG+AGG | + | chr3.1:62771001-62771020 | None:intergenic | 40.0% | |
| CTAATTGTTGCATGCCAGAA+GGG | - | chr3.1:62770496-62770515 | MS.gene29001:intron | 40.0% | |
| CTGTCATGAGTGATTGATCT+TGG | - | chr3.1:62769934-62769953 | MS.gene29001:CDS | 40.0% | |
| GACTTGATGTTATGAACAGG+AGG | - | chr3.1:62770303-62770322 | MS.gene29001:intron | 40.0% | |
| GAGTGAGGCATAATTAGTAG+CGG | + | chr3.1:62768744-62768763 | None:intergenic | 40.0% | |
| GCTTTCAACAGTTACTACCA+AGG | + | chr3.1:62769961-62769980 | None:intergenic | 40.0% | |
| GGTAAGGTAAGAGACATTGA+AGG | + | chr3.1:62769491-62769510 | None:intergenic | 40.0% | |
| GTCTAGTTGAAGAAGAAGGA+CGG | + | chr3.1:62768781-62768800 | None:intergenic | 40.0% | |
| TAATGATCTGGCCAACAATC+AGG | + | chr3.1:62770757-62770776 | None:intergenic | 40.0% | |
| TAATGTTCTAGTGTGGCAAC+TGG | + | chr3.1:62771230-62771249 | None:intergenic | 40.0% | |
| TCTTTGTTGATCAGTCCAAC+TGG | + | chr3.1:62772032-62772051 | None:intergenic | 40.0% | |
| TGAGATTAGATAGCTACCCA+AGG | + | chr3.1:62771039-62771058 | None:intergenic | 40.0% | |
| TGATGTTATGAACAGGAGGT+TGG | - | chr3.1:62770307-62770326 | MS.gene29001:intron | 40.0% | |
| TGGGATTTCTCAAAGGCTTT+GGG | - | chr3.1:62769365-62769384 | MS.gene29001:intron | 40.0% | |
| TTATTGGCGCTCAGCAAATT+GGG | - | chr3.1:62772218-62772237 | MS.gene29001:CDS | 40.0% | |
| TTCACAAGCAGCTAATGATC+TGG | + | chr3.1:62770769-62770788 | None:intergenic | 40.0% | |
| TTGGGATTTCTCAAAGGCTT+TGG | - | chr3.1:62769364-62769383 | MS.gene29001:intron | 40.0% | |
| TTTATTGGCGCTCAGCAAAT+TGG | - | chr3.1:62772217-62772236 | MS.gene29001:CDS | 40.0% | |
| ! | CGGTTACACAAACCTGTTTT+GGG | - | chr3.1:62770803-62770822 | MS.gene29001:intron | 40.0% |
| ! | GGAATTGGTAACAGTGATTG+TGG | + | chr3.1:62768693-62768712 | None:intergenic | 40.0% |
| ! | GTTAGTTTCTGGATCGAATC+TGG | - | chr3.1:62769447-62769466 | MS.gene29001:intron | 40.0% |
| ! | GTTGTTCTGAACCTGATTGT+TGG | - | chr3.1:62770743-62770762 | MS.gene29001:CDS | 40.0% |
| ! | TCTGGTGAGCTTAATCCTTT+TGG | - | chr3.1:62770936-62770955 | MS.gene29001:intron | 40.0% |
| ! | TTAGTGGCCATGTTAGTTTC+TGG | - | chr3.1:62769436-62769455 | MS.gene29001:intron | 40.0% |
| !! | AGAAATGTAGGTGTTGGTGT+TGG | + | chr3.1:62768714-62768733 | None:intergenic | 40.0% |
| !! | CCTCTTAAGTTTGCTGGAAT+TGG | - | chr3.1:62770998-62771017 | MS.gene29001:intron | 40.0% |
| !! | CTTAAGTTTGCTGGAATTGG+TGG | - | chr3.1:62771001-62771020 | MS.gene29001:intron | 40.0% |
| !! | CTTTATTGTTGTTTGGGGCA+TGG | - | chr3.1:62771308-62771327 | MS.gene29001:intron | 40.0% |
| !! | GCTCTTGCTTTTGTTTACCT+TGG | - | chr3.1:62769794-62769813 | MS.gene29001:intron | 40.0% |
| !!! | ACAAACCTGTTTTGGGTTCA+AGG | - | chr3.1:62770810-62770829 | MS.gene29001:intron | 40.0% |
| AAAAGCAAGAGCTGCGTCAT+AGG | + | chr3.1:62769786-62769805 | None:intergenic | 45.0% | |
| AATAGACTGTCCGTCGATCT+AGG | + | chr3.1:62771534-62771553 | None:intergenic | 45.0% | |
| ACAAGCCCCTTCTTGATGTT+CGG | - | chr3.1:62769733-62769752 | MS.gene29001:intron | 45.0% | |
| AGCGGCACTTAGAGAAATGT+AGG | + | chr3.1:62768726-62768745 | None:intergenic | 45.0% | |
| AGTTTACTAAAGAGCCGCGT+AGG | + | chr3.1:62769524-62769543 | None:intergenic | 45.0% | |
| CGTGTTTGCTTTGTAGCTCA+GGG | - | chr3.1:62769653-62769672 | MS.gene29001:intron | 45.0% | |
| CTCGTTCTTACCCAAAGTTG+CGG | - | chr3.1:62770450-62770469 | MS.gene29001:CDS | 45.0% | |
| CTTTGATGCTGCTGAAGAAG+AGG | - | chr3.1:62770836-62770855 | MS.gene29001:intron | 45.0% | |
| GAGTGATTGATCTTGGACCT+TGG | - | chr3.1:62769941-62769960 | MS.gene29001:CDS | 45.0% | |
| GCCCTCAAATGAACACAACA+AGG | - | chr3.1:62769755-62769774 | MS.gene29001:intron | 45.0% | |
| GGTAACAGTGATTGTGGGAA+GGG | + | chr3.1:62768687-62768706 | None:intergenic | 45.0% | |
| GTGGTGTTTCGGAATTCCTT+GGG | - | chr3.1:62771020-62771039 | MS.gene29001:intron | 45.0% | |
| GTGTTGTAAGGAAGAGAGTG+AGG | + | chr3.1:62768759-62768778 | None:intergenic | 45.0% | |
| TAGATCGACGGACAGTCTAT+TGG | - | chr3.1:62771533-62771552 | MS.gene29001:intron | 45.0% | |
| TAGATGTTGGAACCATTCCC+AGG | - | chr3.1:62770198-62770217 | MS.gene29001:intron | 45.0% | |
| TAGTAGGAGGTGACAAGGAA+AGG | - | chr3.1:62769859-62769878 | MS.gene29001:intron | 45.0% | |
| TGATGCATGTTGAAGACCCA+TGG | - | chr3.1:62771357-62771376 | MS.gene29001:intron | 45.0% | |
| TGGTAACAGTGATTGTGGGA+AGG | + | chr3.1:62768688-62768707 | None:intergenic | 45.0% | |
| TGTTATGAACAGGAGGTTGG+TGG | - | chr3.1:62770310-62770329 | MS.gene29001:intron | 45.0% | |
| ! | CCGGTTACACAAACCTGTTT+TGG | - | chr3.1:62770802-62770821 | MS.gene29001:intron | 45.0% |
| ! | CTGCGATCTTCTTTTGCGTT+TGG | - | chr3.1:62769604-62769623 | MS.gene29001:intron | 45.0% |
| ! | GTCGATGATGGTCTAGATGT+TGG | - | chr3.1:62770185-62770204 | MS.gene29001:intron | 45.0% |
| !! | AGAAGAAGGACGGTGTTGTA+AGG | + | chr3.1:62768771-62768790 | None:intergenic | 45.0% |
| !! | GTAGGTGTTGGTGTTGGAAT+TGG | + | chr3.1:62768708-62768727 | None:intergenic | 45.0% |
| !! | TGCTGGAATTGGTGGTGTTT+CGG | - | chr3.1:62771009-62771028 | MS.gene29001:intron | 45.0% |
| !!! | AACCTGTTTTGGGTTCAAGG+AGG | - | chr3.1:62770813-62770832 | MS.gene29001:intron | 45.0% |
| !!! | GTTTTGAAGGCATGGGTGAA+AGG | - | chr3.1:62770137-62770156 | MS.gene29001:CDS | 45.0% |
| ACCTCTAGTAGGAGGTGACA+AGG | - | chr3.1:62769854-62769873 | MS.gene29001:intron | 50.0% | |
| ACTGCATATCCAGCTTCCCT+TGG | + | chr3.1:62769702-62769721 | None:intergenic | 50.0% | |
| AGCCTCCTTGAACCCAAAAC+AGG | + | chr3.1:62770818-62770837 | None:intergenic | 50.0% | |
| CAGAAAGAGATGGGAAGCTC+TGG | - | chr3.1:62768966-62768985 | MS.gene29001:intron | 50.0% | |
| CAGAGCTTCCCATCTCTTTC+TGG | + | chr3.1:62768968-62768987 | None:intergenic | 50.0% | |
| CATGGGTGAAAGGTTCAACC+TGG | - | chr3.1:62770147-62770166 | MS.gene29001:CDS | 50.0% | |
| CTGCATATCCAGCTTCCCTT+GGG | + | chr3.1:62769701-62769720 | None:intergenic | 50.0% | |
| CTGCTCCACAACAGACCAAA+AGG | + | chr3.1:62770954-62770973 | None:intergenic | 50.0% | |
| GCAAATTGGGCGCTATCTTC+AGG | - | chr3.1:62772231-62772250 | MS.gene29001:CDS | 50.0% | |
| GCGTGTTTGCTTTGTAGCTC+AGG | - | chr3.1:62769652-62769671 | MS.gene29001:intron | 50.0% | |
| GGCGCTATCTTCAGGAGATT+AGG | - | chr3.1:62772239-62772258 | MS.gene29001:CDS | 50.0% | |
| GGGAACTTCTCCGCAACTTT+GGG | + | chr3.1:62770463-62770482 | None:intergenic | 50.0% | |
| GGTGGTGTTTCGGAATTCCT+TGG | - | chr3.1:62771019-62771038 | MS.gene29001:intron | 50.0% | |
| TCAGCGCCTCTTAAGTTTGC+TGG | - | chr3.1:62770992-62771011 | MS.gene29001:intron | 50.0% | |
| TCCTTGTCACCTCCTACTAG+AGG | + | chr3.1:62769858-62769877 | None:intergenic | 50.0% | |
| TCTGTATCCCCAACCTTCCT+TGG | + | chr3.1:62772065-62772084 | None:intergenic | 50.0% | |
| TGAGGGCCGAACATCAAGAA+GGG | + | chr3.1:62769742-62769761 | None:intergenic | 50.0% | |
| TGCATATCCAGCTTCCCTTG+GGG | + | chr3.1:62769700-62769719 | None:intergenic | 50.0% | |
| TGGGGCATGGTATAGTGCAT+GGG | - | chr3.1:62771321-62771340 | MS.gene29001:intron | 50.0% | |
| TTGAGGGCCGAACATCAAGA+AGG | + | chr3.1:62769743-62769762 | None:intergenic | 50.0% | |
| TTGGGGCATGGTATAGTGCA+TGG | - | chr3.1:62771320-62771339 | MS.gene29001:intron | 50.0% | |
| ! | ATTAGTGTTTTCGGCACGCC+TGG | - | chr3.1:62772084-62772103 | MS.gene29001:intron | 50.0% |
| ! | CTTTTGGTCTGTTGTGGAGC+AGG | - | chr3.1:62770952-62770971 | MS.gene29001:intron | 50.0% |
| AAAGAGCCGCGTAGGTAGCT+CGG | + | chr3.1:62769516-62769535 | None:intergenic | 55.0% | |
| ACAAAGAGCTGCTGCAGCCA+AGG | - | chr3.1:62772045-62772064 | MS.gene29001:intron | 55.0% | |
| GAGCAGGATCTTGTCGTGGA+GGG | - | chr3.1:62770968-62770987 | MS.gene29001:intron | 55.0% | |
| GAGGGCCGAACATCAAGAAG+GGG | + | chr3.1:62769741-62769760 | None:intergenic | 55.0% | |
| GGCTGCTGCCAGAAAGAGAT+GGG | - | chr3.1:62768957-62768976 | MS.gene29001:intron | 55.0% | |
| GGGGAACTTCTCCGCAACTT+TGG | + | chr3.1:62770464-62770483 | None:intergenic | 55.0% | |
| GTTCTTACCCCAAGGGAAGC+TGG | - | chr3.1:62769690-62769709 | MS.gene29001:intron | 55.0% | |
| TACCAACCGAGCTACCTACG+CGG | - | chr3.1:62769507-62769526 | MS.gene29001:intron | 55.0% | |
| TGCTGCAGCCAAGGAAGGTT+GGG | - | chr3.1:62772054-62772073 | MS.gene29001:intron | 55.0% | |
| TGGCTGCTGCCAGAAAGAGA+TGG | - | chr3.1:62768956-62768975 | MS.gene29001:intron | 55.0% | |
| TGTGGAGCAGGATCTTGTCG+TGG | - | chr3.1:62770964-62770983 | MS.gene29001:intron | 55.0% | |
| TTGCATGCCAGAAGGGACTG+AGG | - | chr3.1:62770503-62770522 | MS.gene29001:intron | 55.0% | |
| ! | CGTAGGTAGCTCGGTTGGTA+AGG | + | chr3.1:62769507-62769526 | None:intergenic | 55.0% |
| !! | TGAACAGGAGGTTGGTGGAG+TGG | - | chr3.1:62770315-62770334 | MS.gene29001:intron | 55.0% |
| AGAGCTGCTGCAGCCAAGGA+AGG | - | chr3.1:62772049-62772068 | MS.gene29001:intron | 60.0% | |
| CTGCTGCAGCCAAGGAAGGT+TGG | - | chr3.1:62772053-62772072 | MS.gene29001:intron | 60.0% | |
| GAGCTCACCTCAGTCCCTTC+TGG | + | chr3.1:62770513-62770532 | None:intergenic | 60.0% | |
| GCTGCAGCCAAGGAAGGTTG+GGG | - | chr3.1:62772055-62772074 | MS.gene29001:intron | 60.0% | |
| GGAGCAGGATCTTGTCGTGG+AGG | - | chr3.1:62770967-62770986 | MS.gene29001:intron | 60.0% | |
| AGCCGCGTAGGTAGCTCGGT+TGG | + | chr3.1:62769512-62769531 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 62768671 | 62772270 | 62768671 | ID=MS.gene29001 |
| chr3.1 | mRNA | 62768671 | 62772270 | 62768671 | ID=MS.gene29001.t1;Parent=MS.gene29001 |
| chr3.1 | exon | 62772130 | 62772270 | 62772130 | ID=MS.gene29001.t1.exon1;Parent=MS.gene29001.t1 |
| chr3.1 | CDS | 62772130 | 62772270 | 62772130 | ID=cds.MS.gene29001.t1;Parent=MS.gene29001.t1 |
| chr3.1 | exon | 62771954 | 62772049 | 62771954 | ID=MS.gene29001.t1.exon2;Parent=MS.gene29001.t1 |
| chr3.1 | CDS | 62771954 | 62772049 | 62771954 | ID=cds.MS.gene29001.t1;Parent=MS.gene29001.t1 |
| chr3.1 | exon | 62771165 | 62771272 | 62771165 | ID=MS.gene29001.t1.exon3;Parent=MS.gene29001.t1 |
| chr3.1 | CDS | 62771165 | 62771272 | 62771165 | ID=cds.MS.gene29001.t1;Parent=MS.gene29001.t1 |
| chr3.1 | exon | 62770699 | 62770795 | 62770699 | ID=MS.gene29001.t1.exon4;Parent=MS.gene29001.t1 |
| chr3.1 | CDS | 62770699 | 62770795 | 62770699 | ID=cds.MS.gene29001.t1;Parent=MS.gene29001.t1 |
| chr3.1 | exon | 62770580 | 62770619 | 62770580 | ID=MS.gene29001.t1.exon5;Parent=MS.gene29001.t1 |
| chr3.1 | CDS | 62770580 | 62770619 | 62770580 | ID=cds.MS.gene29001.t1;Parent=MS.gene29001.t1 |
| chr3.1 | exon | 62770417 | 62770491 | 62770417 | ID=MS.gene29001.t1.exon6;Parent=MS.gene29001.t1 |
| chr3.1 | CDS | 62770417 | 62770491 | 62770417 | ID=cds.MS.gene29001.t1;Parent=MS.gene29001.t1 |
| chr3.1 | exon | 62770084 | 62770171 | 62770084 | ID=MS.gene29001.t1.exon7;Parent=MS.gene29001.t1 |
| chr3.1 | CDS | 62770084 | 62770171 | 62770084 | ID=cds.MS.gene29001.t1;Parent=MS.gene29001.t1 |
| chr3.1 | exon | 62769900 | 62769967 | 62769900 | ID=MS.gene29001.t1.exon8;Parent=MS.gene29001.t1 |
| chr3.1 | CDS | 62769900 | 62769967 | 62769900 | ID=cds.MS.gene29001.t1;Parent=MS.gene29001.t1 |
| chr3.1 | exon | 62768836 | 62768908 | 62768836 | ID=MS.gene29001.t1.exon9;Parent=MS.gene29001.t1 |
| chr3.1 | CDS | 62768836 | 62768908 | 62768836 | ID=cds.MS.gene29001.t1;Parent=MS.gene29001.t1 |
| chr3.1 | exon | 62768671 | 62768754 | 62768671 | ID=MS.gene29001.t1.exon10;Parent=MS.gene29001.t1 |
| chr3.1 | CDS | 62768671 | 62768754 | 62768671 | ID=cds.MS.gene29001.t1;Parent=MS.gene29001.t1 |
| Gene Sequence |
| Protein sequence |
