Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31059.t1 | XP_013461538.1 | 99.5 | 215 | 1 | 0 | 1 | 215 | 72 | 286 | 3.50E-124 | 454.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31059.t1 | Q9SRK5 | 81.9 | 215 | 39 | 0 | 1 | 215 | 68 | 282 | 1.3e-106 | 387.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31059.t1 | A0A072V2I1 | 99.5 | 215 | 1 | 0 | 1 | 215 | 72 | 286 | 2.5e-124 | 454.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene31059 | 0.802864 | 4.58E-49 | -1.69E-46 |
| MS.gene049230 | MS.gene31059 | 0.888121 | 7.81E-73 | -1.69E-46 |
| MS.gene049264 | MS.gene31059 | 0.824747 | 6.83E-54 | -1.69E-46 |
| MS.gene049378 | MS.gene31059 | 0.960653 | 8.43E-119 | -1.69E-46 |
| MS.gene049669 | MS.gene31059 | 0.827275 | 1.71E-54 | -1.69E-46 |
| MS.gene049758 | MS.gene31059 | 0.818488 | 1.91E-52 | -1.69E-46 |
| MS.gene049822 | MS.gene31059 | 0.800619 | 1.32E-48 | -1.69E-46 |
| MS.gene04984 | MS.gene31059 | 0.844594 | 6.86E-59 | -1.69E-46 |
| MS.gene04991 | MS.gene31059 | -0.872966 | 2.12E-67 | -1.69E-46 |
| MS.gene050105 | MS.gene31059 | 0.803086 | 4.12E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene31059 | 0.899913 | 1.24E-77 | -1.69E-46 |
| MS.gene050227 | MS.gene31059 | 0.904055 | 1.83E-79 | -1.69E-46 |
| MS.gene050228 | MS.gene31059 | 0.905775 | 3.00E-80 | -1.69E-46 |
| MS.gene050330 | MS.gene31059 | -0.812118 | 4.98E-51 | -1.69E-46 |
| MS.gene050442 | MS.gene31059 | 0.830561 | 2.74E-55 | -1.69E-46 |
| MS.gene050623 | MS.gene31059 | -0.895099 | 1.32E-75 | -1.69E-46 |
| MS.gene050642 | MS.gene31059 | 0.862035 | 6.74E-64 | -1.69E-46 |
| MS.gene050719 | MS.gene31059 | 0.831641 | 1.49E-55 | -1.69E-46 |
| MS.gene050721 | MS.gene31059 | 0.831001 | 2.14E-55 | -1.69E-46 |
| MS.gene050724 | MS.gene31059 | 0.817463 | 3.26E-52 | -1.69E-46 |
| MS.gene050762 | MS.gene31059 | 0.871835 | 5.05E-67 | -1.69E-46 |
| MS.gene050763 | MS.gene31059 | 0.871728 | 5.48E-67 | -1.69E-46 |
| MS.gene050820 | MS.gene31059 | 0.80179 | 7.63E-49 | -1.69E-46 |
| MS.gene050824 | MS.gene31059 | 0.810149 | 1.33E-50 | -1.69E-46 |
| MS.gene050826 | MS.gene31059 | 0.801878 | 7.32E-49 | -1.69E-46 |
| MS.gene050953 | MS.gene31059 | 0.802175 | 6.36E-49 | -1.69E-46 |
| MS.gene050987 | MS.gene31059 | 0.804067 | 2.58E-49 | -1.69E-46 |
| MS.gene051122 | MS.gene31059 | 0.803427 | 3.51E-49 | -1.69E-46 |
| MS.gene05119 | MS.gene31059 | -0.809618 | 1.73E-50 | -1.69E-46 |
| MS.gene051210 | MS.gene31059 | 0.832285 | 1.03E-55 | -1.69E-46 |
| MS.gene051535 | MS.gene31059 | 0.823816 | 1.13E-53 | -1.69E-46 |
| MS.gene051860 | MS.gene31059 | 0.801223 | 9.97E-49 | -1.69E-46 |
| MS.gene051935 | MS.gene31059 | 0.82055 | 6.47E-53 | -1.69E-46 |
| MS.gene051983 | MS.gene31059 | 0.870445 | 1.45E-66 | -1.69E-46 |
| MS.gene052077 | MS.gene31059 | 0.863003 | 3.39E-64 | -1.69E-46 |
| MS.gene052176 | MS.gene31059 | 0.890556 | 8.85E-74 | -1.69E-46 |
| MS.gene052302 | MS.gene31059 | 0.819427 | 1.17E-52 | -1.69E-46 |
| MS.gene052309 | MS.gene31059 | -0.808588 | 2.88E-50 | -1.69E-46 |
| MS.gene052333 | MS.gene31059 | 0.806175 | 9.34E-50 | -1.69E-46 |
| MS.gene052376 | MS.gene31059 | 0.82636 | 2.83E-54 | -1.69E-46 |
| MS.gene052389 | MS.gene31059 | 0.903997 | 1.94E-79 | -1.69E-46 |
| MS.gene052420 | MS.gene31059 | 0.824058 | 9.92E-54 | -1.69E-46 |
| MS.gene052464 | MS.gene31059 | 0.826758 | 2.28E-54 | -1.69E-46 |
| MS.gene052586 | MS.gene31059 | 0.828181 | 1.04E-54 | -1.69E-46 |
| MS.gene052856 | MS.gene31059 | 0.814317 | 1.64E-51 | -1.69E-46 |
| MS.gene052858 | MS.gene31059 | 0.811686 | 6.18E-51 | -1.69E-46 |
| MS.gene052860 | MS.gene31059 | 0.805632 | 1.22E-49 | -1.69E-46 |
| MS.gene053216 | MS.gene31059 | 0.808976 | 2.38E-50 | -1.69E-46 |
| MS.gene053811 | MS.gene31059 | 0.809182 | 2.15E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene31059 | 0.83287 | 7.39E-56 | -1.69E-46 |
| MS.gene054379 | MS.gene31059 | 0.879585 | 1.11E-69 | -1.69E-46 |
| MS.gene054468 | MS.gene31059 | 0.859719 | 3.41E-63 | -1.69E-46 |
| MS.gene054479 | MS.gene31059 | 0.80504 | 1.62E-49 | -1.69E-46 |
| MS.gene054826 | MS.gene31059 | 0.856321 | 3.48E-62 | -1.69E-46 |
| MS.gene054930 | MS.gene31059 | 0.902087 | 1.39E-78 | -1.69E-46 |
| MS.gene054942 | MS.gene31059 | 0.80397 | 2.70E-49 | -1.69E-46 |
| MS.gene054983 | MS.gene31059 | 0.804993 | 1.65E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene31059 | 0.859713 | 3.42E-63 | -1.69E-46 |
| MS.gene05595 | MS.gene31059 | 0.83436 | 3.14E-56 | -1.69E-46 |
| MS.gene056400 | MS.gene31059 | 0.825426 | 4.72E-54 | -1.69E-46 |
| MS.gene056480 | MS.gene31059 | 0.826358 | 2.83E-54 | -1.69E-46 |
| MS.gene056506 | MS.gene31059 | 0.823648 | 1.24E-53 | -1.69E-46 |
| MS.gene056849 | MS.gene31059 | 0.801566 | 8.48E-49 | -1.69E-46 |
| MS.gene056979 | MS.gene31059 | 0.865179 | 7.12E-65 | -1.69E-46 |
| MS.gene057026 | MS.gene31059 | 0.834239 | 3.36E-56 | -1.69E-46 |
| MS.gene057156 | MS.gene31059 | -0.81429 | 1.66E-51 | -1.69E-46 |
| MS.gene05761 | MS.gene31059 | 0.854119 | 1.52E-61 | -1.69E-46 |
| MS.gene057665 | MS.gene31059 | 0.809602 | 1.74E-50 | -1.69E-46 |
| MS.gene057929 | MS.gene31059 | 0.809692 | 1.67E-50 | -1.69E-46 |
| MS.gene058139 | MS.gene31059 | 0.818182 | 2.24E-52 | -1.69E-46 |
| MS.gene058146 | MS.gene31059 | 0.831022 | 2.11E-55 | -1.69E-46 |
| MS.gene058182 | MS.gene31059 | 0.806609 | 7.57E-50 | -1.69E-46 |
| MS.gene058223 | MS.gene31059 | -0.803751 | 3.00E-49 | -1.69E-46 |
| MS.gene058399 | MS.gene31059 | 0.814326 | 1.63E-51 | -1.69E-46 |
| MS.gene058435 | MS.gene31059 | 0.825991 | 3.47E-54 | -1.69E-46 |
| MS.gene058503 | MS.gene31059 | 0.802767 | 4.80E-49 | -1.69E-46 |
| MS.gene058710 | MS.gene31059 | 0.823317 | 1.48E-53 | -1.69E-46 |
| MS.gene05872 | MS.gene31059 | 0.800274 | 1.56E-48 | -1.69E-46 |
| MS.gene058749 | MS.gene31059 | 0.810416 | 1.17E-50 | -1.69E-46 |
| MS.gene059128 | MS.gene31059 | 0.803259 | 3.80E-49 | -1.69E-46 |
| MS.gene05984 | MS.gene31059 | 0.803133 | 4.03E-49 | -1.69E-46 |
| MS.gene059952 | MS.gene31059 | 0.812328 | 4.48E-51 | -1.69E-46 |
| MS.gene060084 | MS.gene31059 | 0.844443 | 7.54E-59 | -1.69E-46 |
| MS.gene060297 | MS.gene31059 | 0.832799 | 7.69E-56 | -1.69E-46 |
| MS.gene060572 | MS.gene31059 | 0.809456 | 1.88E-50 | -1.69E-46 |
| MS.gene060683 | MS.gene31059 | 0.845456 | 4.02E-59 | -1.69E-46 |
| MS.gene060685 | MS.gene31059 | 0.839918 | 1.19E-57 | -1.69E-46 |
| MS.gene060879 | MS.gene31059 | 0.852862 | 3.49E-61 | -1.69E-46 |
| MS.gene060940 | MS.gene31059 | 0.840448 | 8.64E-58 | -1.69E-46 |
| MS.gene060942 | MS.gene31059 | 0.815997 | 6.94E-52 | -1.69E-46 |
| MS.gene060998 | MS.gene31059 | 0.8403 | 9.45E-58 | -1.69E-46 |
| MS.gene061002 | MS.gene31059 | 0.823676 | 1.22E-53 | -1.69E-46 |
| MS.gene061040 | MS.gene31059 | -0.828506 | 8.66E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31059.t1 | MTR_3g094300 | 99.535 | 215 | 1 | 0 | 1 | 215 | 72 | 286 | 1.85e-164 | 454 |
| MS.gene31059.t1 | MTR_1g090867 | 47.159 | 176 | 91 | 2 | 2 | 176 | 80 | 254 | 2.35e-44 | 152 |
| MS.gene31059.t1 | MTR_7g034465 | 39.773 | 176 | 104 | 2 | 1 | 176 | 208 | 381 | 4.29e-31 | 119 |
| MS.gene31059.t1 | MTR_7g034465 | 39.773 | 176 | 104 | 2 | 1 | 176 | 314 | 487 | 8.76e-31 | 118 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31059.t1 | AT3G10940 | 81.860 | 215 | 39 | 0 | 1 | 215 | 68 | 282 | 4.95e-137 | 385 |
| MS.gene31059.t1 | AT3G52180 | 43.655 | 197 | 109 | 2 | 2 | 197 | 74 | 269 | 1.40e-46 | 155 |
| MS.gene31059.t1 | AT3G52180 | 43.655 | 197 | 109 | 2 | 2 | 197 | 74 | 269 | 2.31e-46 | 155 |
| MS.gene31059.t1 | AT3G52180 | 43.655 | 197 | 109 | 2 | 2 | 197 | 74 | 269 | 4.77e-45 | 154 |
| MS.gene31059.t1 | AT3G52180 | 44.571 | 175 | 95 | 2 | 24 | 197 | 1 | 174 | 3.15e-40 | 139 |
| MS.gene31059.t1 | AT3G01510 | 40.341 | 176 | 102 | 3 | 1 | 176 | 126 | 298 | 2.39e-32 | 122 |
| MS.gene31059.t1 | AT3G01510 | 40.341 | 176 | 102 | 3 | 1 | 176 | 126 | 298 | 2.39e-32 | 122 |
| MS.gene31059.t1 | AT3G01510 | 40.341 | 176 | 102 | 3 | 1 | 176 | 268 | 440 | 5.88e-32 | 122 |
Find 44 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACAATTGCTTATTTGTTC+TGG | 0.251643 | 3.3:-78486346 | MS.gene31059:CDS |
| AGTCTTCCAGACCATGCTTT+TGG | 0.273596 | 3.3:-78485518 | MS.gene31059:CDS |
| TCTAAGGATGACACTGCTTT+AGG | 0.291760 | 3.3:+78486440 | None:intergenic |
| TTAAGGTGATCTACATCTTC+AGG | 0.294100 | 3.3:+78487102 | None:intergenic |
| CTCAGAAATTGCCCATTCTA+AGG | 0.297875 | 3.3:+78486424 | None:intergenic |
| CCACACCTTCTTCCTTCTTA+AGG | 0.313968 | 3.3:+78487085 | None:intergenic |
| AGGATAAGGATGCTGAGTTT+TGG | 0.315172 | 3.3:-78487041 | MS.gene31059:CDS |
| ATCTTCAGGTTTCTGTGGTT+GGG | 0.320424 | 3.3:+78487116 | None:intergenic |
| AGTGCACTTCGCAAAGAGTT+TGG | 0.350408 | 3.3:+78486464 | None:intergenic |
| CATCTTCAGGTTTCTGTGGT+TGG | 0.355320 | 3.3:+78487115 | None:intergenic |
| ACAAGGAGCAACTTATGATT+TGG | 0.358184 | 3.3:-78485573 | MS.gene31059:CDS |
| CTTTGAAGTTAGCATATCAT+AGG | 0.392022 | 3.3:+78485625 | None:intergenic |
| TCTAAACTTGCAACAGGATA+AGG | 0.402340 | 3.3:-78487055 | MS.gene31059:CDS |
| AACCGTGTCTGCGCTCTTCG+TGG | 0.412822 | 3.3:-78485461 | MS.gene31059:CDS |
| TTATGAGTATCATCACGATC+TGG | 0.441184 | 3.3:-78488171 | MS.gene31059:CDS |
| ATATATTCTAAACTTGCAAC+AGG | 0.450710 | 3.3:-78487061 | MS.gene31059:CDS |
| AGATCGTGATGATACTCATA+AGG | 0.451970 | 3.3:+78488173 | None:intergenic |
| AAGCAGTGTCATCCTTAGAA+TGG | 0.458306 | 3.3:-78486436 | MS.gene31059:CDS |
| CTCTCAAATGGCTCCTTCCA+TGG | 0.458673 | 3.3:+78485539 | None:intergenic |
| AAATAAGCAATTGTCACTGC+TGG | 0.476094 | 3.3:+78486353 | None:intergenic |
| ATAACTGACAATTTGATTGT+GGG | 0.477333 | 3.3:-78487141 | MS.gene31059:CDS |
| ATATCCCCAAAAGCATGGTC+TGG | 0.485767 | 3.3:+78485512 | None:intergenic |
| TATAACTGACAATTTGATTG+TGG | 0.487738 | 3.3:-78487142 | MS.gene31059:CDS |
| GTTTATGTGCACTGTACTGC+AGG | 0.506912 | 3.3:-78486389 | MS.gene31059:CDS |
| AGCAGTGTCATCCTTAGAAT+GGG | 0.512745 | 3.3:-78486435 | MS.gene31059:CDS |
| GGGATATAGCAGATTGGGAG+AGG | 0.512919 | 3.3:-78485496 | MS.gene31059:CDS |
| GATCGTGATGATACTCATAA+GGG | 0.517872 | 3.3:+78488174 | None:intergenic |
| TGGGCAATTTCTGAGGGAAA+AGG | 0.518950 | 3.3:-78486416 | MS.gene31059:CDS |
| TGGTCTGGAAGACTCTCAAA+TGG | 0.522030 | 3.3:+78485527 | None:intergenic |
| CTTAGAATGGGCAATTTCTG+AGG | 0.532588 | 3.3:-78486423 | MS.gene31059:CDS |
| TCTACATCTTCAGGTTTCTG+TGG | 0.534119 | 3.3:+78487111 | None:intergenic |
| TATGAGTATCATCACGATCT+GGG | 0.535409 | 3.3:-78488170 | MS.gene31059:intron |
| GTGCACTGTACTGCAGGACT+TGG | 0.536912 | 3.3:-78486383 | MS.gene31059:CDS |
| GATCACCTTAAGAAGGAAGA+AGG | 0.559918 | 3.3:-78487090 | MS.gene31059:CDS |
| CCAAATAAAAGAGCAATACA+AGG | 0.573394 | 3.3:-78485590 | MS.gene31059:CDS |
| TTAGAATGGGCAATTTCTGA+GGG | 0.579734 | 3.3:-78486422 | MS.gene31059:CDS |
| TAACTGACAATTTGATTGTG+GGG | 0.583931 | 3.3:-78487140 | MS.gene31059:CDS |
| AGATGTAGATCACCTTAAGA+AGG | 0.584321 | 3.3:-78487097 | MS.gene31059:CDS |
| TAGCTATGAAGAAGATGATG+AGG | 0.589831 | 3.3:-78488199 | MS.gene31059:CDS |
| CTGCTATATCCCCAAAAGCA+TGG | 0.592436 | 3.3:+78485507 | None:intergenic |
| TTCCACGAAGAGCGCAGACA+CGG | 0.603189 | 3.3:+78485459 | None:intergenic |
| CCTTAAGAAGGAAGAAGGTG+TGG | 0.624960 | 3.3:-78487085 | MS.gene31059:CDS |
| CTAACTTCAAAGAGACCTTG+TGG | 0.666372 | 3.3:-78485614 | MS.gene31059:CDS |
| AACTTGAAATTAGACACATG+AGG | 0.731891 | 3.3:-78486981 | MS.gene31059:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAATTAATGAAAAATAAT+TGG | + | chr3.3:78486433-78486452 | None:intergenic | 10.0% |
| !!! | CTATTTATTTTCATAAAAAA+AGG | + | chr3.3:78487872-78487891 | None:intergenic | 10.0% |
| !!! | TTTTGTTTATTTACATTATT+AGG | - | chr3.3:78487168-78487187 | MS.gene31059:intron | 10.0% |
| !! | CTAAATTAATGTACTAAAAA+GGG | + | chr3.3:78486730-78486749 | None:intergenic | 15.0% |
| !! | TAAATTAATGTACTAAAAAG+GGG | + | chr3.3:78486729-78486748 | None:intergenic | 15.0% |
| !! | TCTAAATTAATGTACTAAAA+AGG | + | chr3.3:78486731-78486750 | None:intergenic | 15.0% |
| !!! | AAAAATAATTGGTTTTCTTA+GGG | + | chr3.3:78486422-78486441 | None:intergenic | 15.0% |
| !!! | AAATTTTTCACAAATGAATA+TGG | - | chr3.3:78487992-78488011 | MS.gene31059:intron | 15.0% |
| !!! | AGAAAAACATATTTTGAAAT+TGG | - | chr3.3:78485914-78485933 | MS.gene31059:intron | 15.0% |
| !!! | ATCACATTTCTAAAAAAATT+GGG | + | chr3.3:78486926-78486945 | None:intergenic | 15.0% |
| !!! | TATCACATTTCTAAAAAAAT+TGG | + | chr3.3:78486927-78486946 | None:intergenic | 15.0% |
| !! | AATTGAATTTACATCGAAAT+TGG | + | chr3.3:78485559-78485578 | None:intergenic | 20.0% |
| !! | TATAATTCATACCTGAAATT+AGG | + | chr3.3:78486503-78486522 | None:intergenic | 20.0% |
| !!! | GAAAAATAATTGGTTTTCTT+AGG | + | chr3.3:78486423-78486442 | None:intergenic | 20.0% |
| !!! | TCACATTTCTAAAAAAATTG+GGG | + | chr3.3:78486925-78486944 | None:intergenic | 20.0% |
| !!! | TTGACTGTTTTATATAACAA+AGG | + | chr3.3:78487720-78487739 | None:intergenic | 20.0% |
| ! | AAACAAGATACTATTGGAAT+GGG | + | chr3.3:78486064-78486083 | None:intergenic | 25.0% |
| ! | AATAAGCTGAAAACAACTTA+TGG | + | chr3.3:78487624-78487643 | None:intergenic | 25.0% |
| ! | ACTAAATATGTTTGTAGCTT+AGG | - | chr3.3:78486960-78486979 | MS.gene31059:intron | 25.0% |
| ! | AGAAAAGACACTATAAATCA+GGG | - | chr3.3:78487507-78487526 | MS.gene31059:intron | 25.0% |
| ! | ATAACTGACAATTTGATTGT+GGG | - | chr3.3:78486528-78486547 | MS.gene31059:intron | 25.0% |
| ! | ATAGGAATGAATGAAATTGT+TGG | - | chr3.3:78485627-78485646 | MS.gene31059:CDS | 25.0% |
| ! | ATATATTCTAAACTTGCAAC+AGG | - | chr3.3:78486608-78486627 | MS.gene31059:intron | 25.0% |
| ! | GAAAGCAACTTATATGAAAA+TGG | + | chr3.3:78486185-78486204 | None:intergenic | 25.0% |
| ! | GAAATTATCATCATTTGAAG+TGG | + | chr3.3:78486896-78486915 | None:intergenic | 25.0% |
| ! | GTCTTTATACACTAAAATTG+TGG | - | chr3.3:78485950-78485969 | MS.gene31059:intron | 25.0% |
| ! | TAAGTTATATATCCCATACA+GGG | - | chr3.3:78487932-78487951 | MS.gene31059:intron | 25.0% |
| ! | TAATTCAATCAAGAACAAGT+AGG | + | chr3.3:78487139-78487158 | None:intergenic | 25.0% |
| ! | TAGAAAAGACACTATAAATC+AGG | - | chr3.3:78487506-78487525 | MS.gene31059:intron | 25.0% |
| ! | TATAACTGACAATTTGATTG+TGG | - | chr3.3:78486527-78486546 | MS.gene31059:intron | 25.0% |
| ! | TTAAGTTATATATCCCATAC+AGG | - | chr3.3:78487931-78487950 | MS.gene31059:intron | 25.0% |
| ! | TTAGCTGTGCAAAAAATAAA+AGG | + | chr3.3:78488018-78488037 | None:intergenic | 25.0% |
| ! | TTATCCAAACAAGATACTAT+TGG | + | chr3.3:78486070-78486089 | None:intergenic | 25.0% |
| !! | ACTTTTACAATTCATGTGAA+TGG | - | chr3.3:78486396-78486415 | MS.gene31059:CDS | 25.0% |
| !! | ATAGAAGTATAGAACTACAA+AGG | - | chr3.3:78485686-78485705 | MS.gene31059:intron | 25.0% |
| !! | TCTCCATTTCTTTTCAAAAT+TGG | + | chr3.3:78485857-78485876 | None:intergenic | 25.0% |
| !! | TTAGGTTGTATTAGGAAATA+GGG | - | chr3.3:78486978-78486997 | MS.gene31059:CDS | 25.0% |
| !! | TTCTAAAAAAATTGGGGAAA+GGG | + | chr3.3:78486919-78486938 | None:intergenic | 25.0% |
| !! | TTTCTAAAAAAATTGGGGAA+AGG | + | chr3.3:78486920-78486939 | None:intergenic | 25.0% |
| !!! | TATAGTTTTCGAGTTTATAG+AGG | - | chr3.3:78485887-78485906 | MS.gene31059:intron | 25.0% |
| !!! | TGTTTTTTGATTCAAAGACA+AGG | + | chr3.3:78487382-78487401 | None:intergenic | 25.0% |
| !!! | TTTTTTTCCTTCATTGCATT+TGG | - | chr3.3:78485716-78485735 | MS.gene31059:intron | 25.0% |
| AACCTCTTGTGTAAAAAAAC+AGG | - | chr3.3:78487764-78487783 | MS.gene31059:intron | 30.0% | |
| AACTTGAAATTAGACACATG+AGG | - | chr3.3:78486688-78486707 | MS.gene31059:intron | 30.0% | |
| ACCTCTTGTGTAAAAAAACA+GGG | - | chr3.3:78487765-78487784 | MS.gene31059:intron | 30.0% | |
| AGATTGTTTGGAAGAGTTTA+TGG | - | chr3.3:78487580-78487599 | MS.gene31059:intron | 30.0% | |
| ATTTGGCTAAAAATGATCCA+TGG | - | chr3.3:78488113-78488132 | MS.gene31059:intron | 30.0% | |
| CAAACAAGATACTATTGGAA+TGG | + | chr3.3:78486065-78486084 | None:intergenic | 30.0% | |
| CAAATTTATAGTTCAAGTCC+TGG | - | chr3.3:78487737-78487756 | MS.gene31059:intron | 30.0% | |
| CAATTTATATGCACACTTCA+AGG | - | chr3.3:78487021-78487040 | MS.gene31059:CDS | 30.0% | |
| CATTCCAATAGTATCTTGTT+TGG | - | chr3.3:78486063-78486082 | MS.gene31059:intron | 30.0% | |
| CCAAATAAAAGAGCAATACA+AGG | - | chr3.3:78488079-78488098 | MS.gene31059:intron | 30.0% | |
| CTAGATTATCACATAATGCA+TGG | + | chr3.3:78486767-78486786 | None:intergenic | 30.0% | |
| CTTCTATAAACTATCTCAGA+TGG | + | chr3.3:78486213-78486232 | None:intergenic | 30.0% | |
| CTTGAAACTATTTCAAGAGT+CGG | + | chr3.3:78487100-78487119 | None:intergenic | 30.0% | |
| CTTGAAGTGTGCATATAAAT+TGG | + | chr3.3:78487023-78487042 | None:intergenic | 30.0% | |
| TAACTGACAATTTGATTGTG+GGG | - | chr3.3:78486529-78486548 | MS.gene31059:intron | 30.0% | |
| TAATCACTTGTGAGATTGTT+TGG | - | chr3.3:78487568-78487587 | MS.gene31059:intron | 30.0% | |
| TATGAATACTCTTGAGAGAT+AGG | - | chr3.3:78485609-78485628 | MS.gene31059:CDS | 30.0% | |
| TCGAAATTGGCAAAACAAAT+AGG | + | chr3.3:78485546-78485565 | None:intergenic | 30.0% | |
| TCGTATAAGCAAATCAAAAC+AGG | + | chr3.3:78487533-78487552 | None:intergenic | 30.0% | |
| TCTAAAAAAATTGGGGAAAG+GGG | + | chr3.3:78486918-78486937 | None:intergenic | 30.0% | |
| TGACAATTGCTTATTTGTTC+TGG | - | chr3.3:78487323-78487342 | MS.gene31059:intron | 30.0% | |
| TTGTGTAAAAAAACAGGGTA+AGG | - | chr3.3:78487770-78487789 | MS.gene31059:intron | 30.0% | |
| ! | CCTTGTATTGCTCTTTTATT+TGG | + | chr3.3:78488082-78488101 | None:intergenic | 30.0% |
| ! | CTTAGGTTGTATTAGGAAAT+AGG | - | chr3.3:78486977-78486996 | MS.gene31059:CDS | 30.0% |
| ! | CTTTTAGATTTAAACCGGAA+GGG | - | chr3.3:78485780-78485799 | MS.gene31059:intron | 30.0% |
| ! | TGTGCCTTTTAGATTTAAAC+CGG | - | chr3.3:78485775-78485794 | MS.gene31059:intron | 30.0% |
| ! | TTTGTAGCTTAGGTTGTATT+AGG | - | chr3.3:78486970-78486989 | MS.gene31059:intron | 30.0% |
| !! | CTTTGAAGTTAGCATATCAT+AGG | + | chr3.3:78488047-78488066 | None:intergenic | 30.0% |
| !! | GCTCCAATTTTGAAAAGAAA+TGG | - | chr3.3:78485851-78485870 | MS.gene31059:intron | 30.0% |
| !!! | TGTTTTGATTTGCTTATACG+AGG | - | chr3.3:78487532-78487551 | MS.gene31059:intron | 30.0% |
| !!! | TTGCATTTTAGGATCTGTTT+GGG | + | chr3.3:78486323-78486342 | None:intergenic | 30.0% |
| !!! | TTTGCATTTTAGGATCTGTT+TGG | + | chr3.3:78486324-78486343 | None:intergenic | 30.0% |
| AAATAAGCAATTGTCACTGC+TGG | + | chr3.3:78487319-78487338 | None:intergenic | 35.0% | |
| ACAAGGAGCAACTTATGATT+TGG | - | chr3.3:78488096-78488115 | MS.gene31059:intron | 35.0% | |
| ACACAAACCAAATGCAATGA+AGG | + | chr3.3:78485726-78485745 | None:intergenic | 35.0% | |
| ACTGTTGCATTAGATTTAGG+TGG | - | chr3.3:78485652-78485671 | MS.gene31059:intron | 35.0% | |
| AGATCGTGATGATACTCATA+AGG | + | chr3.3:78485499-78485518 | None:intergenic | 35.0% | |
| AGATGTAGATCACCTTAAGA+AGG | - | chr3.3:78486572-78486591 | MS.gene31059:intron | 35.0% | |
| CCTTCCGGTTTAAATCTAAA+AGG | + | chr3.3:78485782-78485801 | None:intergenic | 35.0% | |
| GAACTATCATTGAGAGCTTA+TGG | + | chr3.3:78487648-78487667 | None:intergenic | 35.0% | |
| GATCGTGATGATACTCATAA+GGG | + | chr3.3:78485498-78485517 | None:intergenic | 35.0% | |
| GCTACTGTTGCATTAGATTT+AGG | - | chr3.3:78485649-78485668 | MS.gene31059:intron | 35.0% | |
| TAGCTATGAAGAAGATGATG+AGG | - | chr3.3:78485470-78485489 | MS.gene31059:CDS | 35.0% | |
| TATCAGTGATGCCTAATTTC+AGG | - | chr3.3:78486489-78486508 | MS.gene31059:intron | 35.0% | |
| TATGAGTATCATCACGATCT+GGG | - | chr3.3:78485499-78485518 | MS.gene31059:CDS | 35.0% | |
| TATTGTTGCACAAAACCTCT+TGG | - | chr3.3:78487439-78487458 | MS.gene31059:intron | 35.0% | |
| TCTAAACTTGCAACAGGATA+AGG | - | chr3.3:78486614-78486633 | MS.gene31059:intron | 35.0% | |
| TGAAATGTTAGCTCAACAGT+AGG | - | chr3.3:78486797-78486816 | MS.gene31059:intron | 35.0% | |
| TTAAGGTGATCTACATCTTC+AGG | + | chr3.3:78486570-78486589 | None:intergenic | 35.0% | |
| TTAGAATGGGCAATTTCTGA+GGG | - | chr3.3:78487247-78487266 | MS.gene31059:intron | 35.0% | |
| TTATGAGTATCATCACGATC+TGG | - | chr3.3:78485498-78485517 | MS.gene31059:CDS | 35.0% | |
| TTGATTCAAAGACAAGGTGA+GGG | + | chr3.3:78487376-78487395 | None:intergenic | 35.0% | |
| TTTGAATCCATGTCAGATTG+AGG | + | chr3.3:78487958-78487977 | None:intergenic | 35.0% | |
| TTTGATTCAAAGACAAGGTG+AGG | + | chr3.3:78487377-78487396 | None:intergenic | 35.0% | |
| ! | ATCATTTGAAGTGGCACTAA+GGG | + | chr3.3:78486887-78486906 | None:intergenic | 35.0% |
| ! | CAGCACAAAGTTTGCATTTT+AGG | + | chr3.3:78486334-78486353 | None:intergenic | 35.0% |
| ! | CCTTTTAGATTTAAACCGGA+AGG | - | chr3.3:78485779-78485798 | MS.gene31059:intron | 35.0% |
| !! | TTTTGGGGATATAGCAGATT+GGG | - | chr3.3:78488168-78488187 | MS.gene31059:intron | 35.0% |
| !!! | ACCCTGTTTTTTTACACAAG+AGG | + | chr3.3:78487769-78487788 | None:intergenic | 35.0% |
| AAGCAGTGTCATCCTTAGAA+TGG | - | chr3.3:78487233-78487252 | MS.gene31059:intron | 40.0% | |
| ACGTACAATACACCAAATGG+TGG | - | chr3.3:78487795-78487814 | MS.gene31059:intron | 40.0% | |
| AGCAGTGTCATCCTTAGAAT+GGG | - | chr3.3:78487234-78487253 | MS.gene31059:intron | 40.0% | |
| CAGCTTATGACAAAAGCTGA+TGG | - | chr3.3:78486244-78486263 | MS.gene31059:intron | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | chr3.3:78487796-78487815 | MS.gene31059:intron | 40.0% | |
| CTAACTTCAAAGAGACCTTG+TGG | - | chr3.3:78488055-78488074 | MS.gene31059:intron | 40.0% | |
| CTCAACCACTGAACATAACA+GGG | + | chr3.3:78486026-78486045 | None:intergenic | 40.0% | |
| CTCAGAAATTGCCCATTCTA+AGG | + | chr3.3:78487248-78487267 | None:intergenic | 40.0% | |
| CTCTGGCGTTGTAATTTCTA+GGG | - | chr3.3:78486823-78486842 | MS.gene31059:intron | 40.0% | |
| CTTAGAATGGGCAATTTCTG+AGG | - | chr3.3:78487246-78487265 | MS.gene31059:intron | 40.0% | |
| GATACTATTGGAATGGGAAG+TGG | + | chr3.3:78486058-78486077 | None:intergenic | 40.0% | |
| GATCACCTTAAGAAGGAAGA+AGG | - | chr3.3:78486579-78486598 | MS.gene31059:intron | 40.0% | |
| GATCTCTACTGAAACTCCTT+CGG | + | chr3.3:78485814-78485833 | None:intergenic | 40.0% | |
| GCTACGTACAATACACCAAA+TGG | - | chr3.3:78487792-78487811 | MS.gene31059:intron | 40.0% | |
| GGCTAAAAATGATCCATGGA+AGG | - | chr3.3:78488117-78488136 | MS.gene31059:intron | 40.0% | |
| TCAACCACTGAACATAACAG+GGG | + | chr3.3:78486025-78486044 | None:intergenic | 40.0% | |
| TCTAAGGATGACACTGCTTT+AGG | + | chr3.3:78487232-78487251 | None:intergenic | 40.0% | |
| TCTCAACCACTGAACATAAC+AGG | + | chr3.3:78486027-78486046 | None:intergenic | 40.0% | |
| TCTCTGGCGTTGTAATTTCT+AGG | - | chr3.3:78486822-78486841 | MS.gene31059:intron | 40.0% | |
| TTGCACAAAACCTCTTGGTT+TGG | - | chr3.3:78487444-78487463 | MS.gene31059:intron | 40.0% | |
| TTTCTACTCTTAGCAGCTCA+AGG | + | chr3.3:78487492-78487511 | None:intergenic | 40.0% | |
| TTTGGTGGGAACAACTAACA+AGG | - | chr3.3:78487462-78487481 | MS.gene31059:intron | 40.0% | |
| ! | AGGATAAGGATGCTGAGTTT+TGG | - | chr3.3:78486628-78486647 | MS.gene31059:intron | 40.0% |
| ! | ATCTTCAGGTTTCTGTGGTT+GGG | + | chr3.3:78486556-78486575 | None:intergenic | 40.0% |
| ! | CATCATTTGAAGTGGCACTA+AGG | + | chr3.3:78486888-78486907 | None:intergenic | 40.0% |
| ! | CTAAAAAGGGGTTTGCTTAC+AGG | + | chr3.3:78486717-78486736 | None:intergenic | 40.0% |
| ! | GATAAGGATGCTGAGTTTTG+GGG | - | chr3.3:78486630-78486649 | MS.gene31059:intron | 40.0% |
| ! | GGAGCTTTTCAGAAATGAAG+AGG | + | chr3.3:78485836-78485855 | None:intergenic | 40.0% |
| ! | GGATAAGGATGCTGAGTTTT+GGG | - | chr3.3:78486629-78486648 | MS.gene31059:intron | 40.0% |
| ! | TCTACATCTTCAGGTTTCTG+TGG | + | chr3.3:78486561-78486580 | None:intergenic | 40.0% |
| ! | TTACACAAGAGGTTGTTTCC+AGG | + | chr3.3:78487758-78487777 | None:intergenic | 40.0% |
| !! | ACAAAACCTCTTGGTTTGGT+GGG | - | chr3.3:78487448-78487467 | MS.gene31059:intron | 40.0% |
| !! | CTTTTGGGGATATAGCAGAT+TGG | - | chr3.3:78488167-78488186 | MS.gene31059:intron | 40.0% |
| !! | GCTCTTTTATTTGGTCCACA+AGG | + | chr3.3:78488073-78488092 | None:intergenic | 40.0% |
| ACAGAATCCAAAACACGTCG+AGG | - | chr3.3:78486846-78486865 | MS.gene31059:intron | 45.0% | |
| AGTGCACTTCGCAAAGAGTT+TGG | + | chr3.3:78487208-78487227 | None:intergenic | 45.0% | |
| CCACACCTTCTTCCTTCTTA+AGG | + | chr3.3:78486587-78486606 | None:intergenic | 45.0% | |
| CCTTAAGAAGGAAGAAGGTG+TGG | - | chr3.3:78486584-78486603 | MS.gene31059:intron | 45.0% | |
| CGTCGAGGACGATTGTAAAA+TGG | - | chr3.3:78486861-78486880 | MS.gene31059:intron | 45.0% | |
| CTGCTATATCCCCAAAAGCA+TGG | + | chr3.3:78488165-78488184 | None:intergenic | 45.0% | |
| GTTTATGTGCACTGTACTGC+AGG | - | chr3.3:78487280-78487299 | MS.gene31059:intron | 45.0% | |
| TCTACCCCTGTTATGTTCAG+TGG | - | chr3.3:78486018-78486037 | MS.gene31059:intron | 45.0% | |
| TGGTCTGGAAGACTCTCAAA+TGG | + | chr3.3:78488145-78488164 | None:intergenic | 45.0% | |
| TTTAAACCGGAAGGGTGATG+TGG | - | chr3.3:78485788-78485807 | MS.gene31059:intron | 45.0% | |
| ! | AGTCTTCCAGACCATGCTTT+TGG | - | chr3.3:78488151-78488170 | MS.gene31059:intron | 45.0% |
| ! | ATATCCCCAAAAGCATGGTC+TGG | + | chr3.3:78488160-78488179 | None:intergenic | 45.0% |
| ! | CATCTTCAGGTTTCTGTGGT+TGG | + | chr3.3:78486557-78486576 | None:intergenic | 45.0% |
| ! | GTCTTCCAGACCATGCTTTT+GGG | - | chr3.3:78488152-78488171 | MS.gene31059:intron | 45.0% |
| ! | TCTTCCAGACCATGCTTTTG+GGG | - | chr3.3:78488153-78488172 | MS.gene31059:intron | 45.0% |
| ! | TGGGCAATTTCTGAGGGAAA+AGG | - | chr3.3:78487253-78487272 | MS.gene31059:intron | 45.0% |
| !! | CACAAAACCTCTTGGTTTGG+TGG | - | chr3.3:78487447-78487466 | MS.gene31059:intron | 45.0% |
| !!! | TATTTATTTTCATAAAAAAA+GGG | + | chr3.3:78487871-78487890 | None:intergenic | 5.0% |
| AGCTCAACAGTAGGAGTCTC+TGG | - | chr3.3:78486806-78486825 | MS.gene31059:intron | 50.0% | |
| CTCTCAAATGGCTCCTTCCA+TGG | + | chr3.3:78488133-78488152 | None:intergenic | 50.0% | |
| GGGATATAGCAGATTGGGAG+AGG | - | chr3.3:78488173-78488192 | MS.gene31059:CDS | 50.0% | |
| GTCAGATTGAGGCCCTGTAT+GGG | + | chr3.3:78487947-78487966 | None:intergenic | 50.0% | |
| GTTGTTCCCACCAAACCAAG+AGG | + | chr3.3:78487457-78487476 | None:intergenic | 50.0% | |
| TACAGGGCCTCAATCTGACA+TGG | - | chr3.3:78487948-78487967 | MS.gene31059:intron | 50.0% | |
| TGTCAGATTGAGGCCCTGTA+TGG | + | chr3.3:78487948-78487967 | None:intergenic | 50.0% | |
| ! | CAATCGTCCTCGACGTGTTT+TGG | + | chr3.3:78486856-78486875 | None:intergenic | 50.0% |
| !!! | CGCAGACACGGTTTTGAATC+AGG | + | chr3.3:78488201-78488220 | None:intergenic | 50.0% |
| ACTAAAGCTCCCGCATACGC+AGG | + | chr3.3:78487837-78487856 | None:intergenic | 55.0% | |
| ATACGCAGGGGTCTAGGAAG+GGG | + | chr3.3:78487823-78487842 | None:intergenic | 55.0% | |
| CATACGCAGGGGTCTAGGAA+GGG | + | chr3.3:78487824-78487843 | None:intergenic | 55.0% | |
| CTAAAGCTCCCGCATACGCA+GGG | + | chr3.3:78487836-78487855 | None:intergenic | 55.0% | |
| GTGCACTGTACTGCAGGACT+TGG | - | chr3.3:78487286-78487305 | MS.gene31059:intron | 55.0% | |
| TAAAGCTCCCGCATACGCAG+GGG | + | chr3.3:78487835-78487854 | None:intergenic | 55.0% | |
| TAGGAAGGGGTCCCACCATT+TGG | + | chr3.3:78487810-78487829 | None:intergenic | 55.0% | |
| TTCCTAGACCCCTGCGTATG+CGG | - | chr3.3:78487824-78487843 | MS.gene31059:intron | 55.0% | |
| ! | ATGCGGGAGCTTTAGTGCAC+TGG | - | chr3.3:78487841-78487860 | MS.gene31059:intron | 55.0% |
| ! | TTCCACGAAGAGCGCAGACA+CGG | + | chr3.3:78488213-78488232 | None:intergenic | 55.0% |
| AACCGTGTCTGCGCTCTTCG+TGG | - | chr3.3:78488208-78488227 | MS.gene31059:CDS | 60.0% | |
| CTTCGGCCACATCACCCTTC+CGG | + | chr3.3:78485797-78485816 | None:intergenic | 60.0% | |
| GCATACGCAGGGGTCTAGGA+AGG | + | chr3.3:78487825-78487844 | None:intergenic | 60.0% | |
| TCCTAGACCCCTGCGTATGC+GGG | - | chr3.3:78487825-78487844 | MS.gene31059:intron | 60.0% | |
| CGGAAGGGTGATGTGGCCGA+AGG | - | chr3.3:78485795-78485814 | MS.gene31059:intron | 65.0% | |
| TCCCGCATACGCAGGGGTCT+AGG | + | chr3.3:78487829-78487848 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 78485454 | 78488237 | 78485454 | ID=MS.gene31059 |
| chr3.3 | mRNA | 78485454 | 78488237 | 78485454 | ID=MS.gene31059.t1;Parent=MS.gene31059 |
| chr3.3 | exon | 78488171 | 78488237 | 78488171 | ID=MS.gene31059.t1.exon1;Parent=MS.gene31059.t1 |
| chr3.3 | CDS | 78488171 | 78488237 | 78488171 | ID=cds.MS.gene31059.t1;Parent=MS.gene31059.t1 |
| chr3.3 | exon | 78486975 | 78487180 | 78486975 | ID=MS.gene31059.t1.exon2;Parent=MS.gene31059.t1 |
| chr3.3 | CDS | 78486975 | 78487180 | 78486975 | ID=cds.MS.gene31059.t1;Parent=MS.gene31059.t1 |
| chr3.3 | exon | 78486331 | 78486501 | 78486331 | ID=MS.gene31059.t1.exon3;Parent=MS.gene31059.t1 |
| chr3.3 | CDS | 78486331 | 78486501 | 78486331 | ID=cds.MS.gene31059.t1;Parent=MS.gene31059.t1 |
| chr3.3 | exon | 78485454 | 78485657 | 78485454 | ID=MS.gene31059.t1.exon4;Parent=MS.gene31059.t1 |
| chr3.3 | CDS | 78485454 | 78485657 | 78485454 | ID=cds.MS.gene31059.t1;Parent=MS.gene31059.t1 |
| Gene Sequence |
| Protein sequence |
