AlfalfaGEDB | MS.gene35514

M. sativa cultivar XinJiangDaYe / MS.gene35514

KEGG: -
GO: GO:0007275 GO:0008150 GO:0032501 GO:0032502 GO:0048856
PFAM: PF04690.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35514.t1	XP_003596925.1	96.9	195	3	1	1	192	1	195	1.70E-93	352.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35514.t1	Q9XFB0	59.4	192	66	4	5	192	1	184	1.6e-52	207.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35514.t1	G7IRH4	96.9	195	3	1	1	192	1	195	1.2e-93	352.1

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene35514.t1	TF	C2C2-YABBY

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049150	MS.gene35514	0.826099	3.27E-54	-1.69E-46
MS.gene049151	MS.gene35514	0.802052	6.74E-49	-1.69E-46
MS.gene049153	MS.gene35514	0.821173	4.65E-53	-1.69E-46
MS.gene049260	MS.gene35514	0.840855	6.76E-58	-1.69E-46
MS.gene049346	MS.gene35514	0.802217	6.23E-49	-1.69E-46
MS.gene049351	MS.gene35514	0.801996	6.92E-49	-1.69E-46
MS.gene049661	MS.gene35514	0.813576	2.39E-51	-1.69E-46
MS.gene049662	MS.gene35514	0.809662	1.69E-50	-1.69E-46
MS.gene049758	MS.gene35514	0.833562	4.97E-56	-1.69E-46
MS.gene050128	MS.gene35514	0.885561	7.31E-72	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35514.t1	MTR_2g087740	97.436	195	2	1	1	192	1	195	6.88e-143	395
MS.gene35514.t1	MTR_4g050300	69.110	191	46	6	3	192	1	179	2.27e-76	227
MS.gene35514.t1	MTR_4g114730	58.480	171	66	2	9	179	11	176	1.35e-62	192
MS.gene35514.t1	MTR_4g025900	50.754	199	66	7	14	192	25	211	1.61e-51	165
MS.gene35514.t1	MTR_4g101660	46.890	209	73	6	8	192	14	208	7.94e-50	160
MS.gene35514.t1	MTR_5g034030	52.201	159	59	3	12	161	12	162	3.19e-47	154
MS.gene35514.t1	MTR_5g046230	45.062	162	74	4	1	160	7	155	6.94e-39	132

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35514.t1	AT1G08465	61.735	196	59	6	1	192	1	184	1.96e-76	227
MS.gene35514.t1	AT2G26580	61.582	177	52	6	3	177	1	163	2.13e-62	191
MS.gene35514.t1	AT2G26580	61.582	177	52	6	3	177	1	163	2.13e-62	191
MS.gene35514.t1	AT2G45190	49.254	201	84	5	8	192	19	217	2.43e-54	172
MS.gene35514.t1	AT4G00180	47.418	213	82	5	8	192	19	229	3.01e-49	160
MS.gene35514.t1	AT4G00180	46.000	200	78	5	21	192	1	198	1.69e-40	137
MS.gene35514.t1	AT1G23420	44.767	172	64	4	13	164	20	180	1.61e-39	135
MS.gene35514.t1	AT1G23420	44.767	172	64	4	13	164	51	211	4.63e-39	134
MS.gene35514.t1	AT2G45190	69.565	92	24	3	105	192	62	153	4.53e-37	126
MS.gene35514.t1	AT1G69180	43.791	153	67	3	12	160	19	156	3.00e-33	117

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Find 35 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTGGACCATGGGGTTG+GGG	0.506917	2.3:+12055025	MS.gene35514:CDS
AAGCAAGCAAAGTTGGACCA+TGG	0.609079	2.3:+12055017	MS.gene35514:CDS
AATTTGCTTTCTGTTAACAT+GGG	0.574518	2.3:+12050940	MS.gene35514:CDS
ACCTGAGGGTGATCTTGTTG+AGG	0.596718	2.3:-12050988	None:intergenic
ACTATAGTGACAGTTAGATG+TGG	0.681695	2.3:+12050907	MS.gene35514:CDS
ACTGTCATCAAGAAGAAAGC+AGG	0.549205	2.3:+12051216	MS.gene35514:CDS
AGCAAGCAAAGTTGGACCAT+GGG	0.525967	2.3:+12055018	MS.gene35514:CDS
ATAGTCAGCAAGCTACTGCA+TGG	0.620983	2.3:-12050889	None:intergenic
ATGAACCGATTATAAGCAGA+AGG	0.594934	2.3:-12053210	None:intergenic
CAAAGTTGGACCATGGGGTT+GGG	0.322720	2.3:+12055024	MS.gene35514:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGCTATAGACAGATCAA+AGG	-	chr2.3:12050174-12050193	None:intergenic	30.0%
AAAGATGGTGCTTTCTTAAA+AGG	-	chr2.3:12050046-12050065	None:intergenic	30.0%
AAATTGCGGTAAATATGGAT+TGG	-	chr2.3:12051824-12051843	None:intergenic	30.0%
AACAAAAGAGGACAAATAAG+AGG	-	chr2.3:12050524-12050543	None:intergenic	30.0%
AAGAATCTGTCATTAATAGG+AGG	-	chr2.3:12050767-12050786	None:intergenic	30.0%
AAGGAGACATTTCATGTTAT+TGG	-	chr2.3:12051444-12051463	None:intergenic	30.0%
AATAAGCTCAAGATGCATAT+AGG	-	chr2.3:12053923-12053942	None:intergenic	30.0%
AGATCAAAGGATAGCATATA+GGG	-	chr2.3:12050161-12050180	None:intergenic	30.0%
ATAAGCTCAAGATGCATATA+GGG	-	chr2.3:12053922-12053941	None:intergenic	30.0%
ATAGTAATTCCTCCAACTAA+TGG	+	chr2.3:12053000-12053019	MS.gene35514:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	12049202	12055079	12049202	ID=MS.gene35514
chr2.3	mRNA	12049202	12055079	12049202	ID=MS.gene35514.t1;Parent=MS.gene35514
chr2.3	exon	12049202	12049282	12049202	ID=MS.gene35514.t1.exon1;Parent=MS.gene35514.t1
chr2.3	CDS	12049202	12049282	12049202	ID=cds.MS.gene35514.t1;Parent=MS.gene35514.t1
chr2.3	exon	12050880	12051008	12050880	ID=MS.gene35514.t1.exon2;Parent=MS.gene35514.t1
chr2.3	CDS	12050880	12051008	12050880	ID=cds.MS.gene35514.t1;Parent=MS.gene35514.t1
chr2.3	exon	12051200	12051332	12051200	ID=MS.gene35514.t1.exon3;Parent=MS.gene35514.t1
chr2.3	CDS	12051200	12051332	12051200	ID=cds.MS.gene35514.t1;Parent=MS.gene35514.t1
chr2.3	exon	12053187	12053235	12053187	ID=MS.gene35514.t1.exon4;Parent=MS.gene35514.t1
chr2.3	CDS	12053187	12053235	12053187	ID=cds.MS.gene35514.t1;Parent=MS.gene35514.t1
chr2.3	exon	12054070	12054145	12054070	ID=MS.gene35514.t1.exon5;Parent=MS.gene35514.t1
chr2.3	CDS	12054070	12054145	12054070	ID=cds.MS.gene35514.t1;Parent=MS.gene35514.t1
chr2.3	exon	12054969	12055079	12054969	ID=MS.gene35514.t1.exon6;Parent=MS.gene35514.t1
chr2.3	CDS	12054969	12055079	12054969	ID=cds.MS.gene35514.t1;Parent=MS.gene35514.t1

Gene Sequence

>MS.gene35514

ATGTCAATGGATATGAATATGATGGCAACAAATGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACTACTCTAGCGGTACAATTCTGAATTCTCTTGTTTTTTCTAACCTTGTTATTATGTCTTTCATCATCTAATTTAATTTTGTTTCCTATATTTCTTAATAACAAGAAATAAGTGAAGTGGATTTCTTGAATTTAACTTAAGATCAAGAATTAATTAATTCTTATGTTATATTTTATGAGAAAGTGCAACTGGGTTTTCTTCCTATAAACTCTACTATATATACTGAGAATTTCAGCTACATATAGTGCTAATTTGAAGGGTGGTAAAAAATAATTATATATATGAGGTTGAATGAAGCAATTCCAAGGTGTTTGTTTGTTTAGAAACAAAAATCCAAAATGCATAATTTGAAGGCTGTGAATGAATAGGTAGGGCTAGACTCACAGAGAAGGTATATTAGGGTTCATTCTAATATATATGAATCCCTTTCCCTTTTTAAATTGATTTATTTAATTATTCAGGATAATAAATAGTATCATGTGATCTCATATGCCAAAATTAACATATTTATTTATTTATTAATTTATTAACCATGAAAAGAAATCTCTTTCTCTGATATGTCTGTCAAAGTTGGGTGGTATTCTGTTCATCATGATTTGGCAGTGAATGGTCATCTTTTTTTATGATCAAGTTTTTTTCACAATTTTGGACATGTTGTAGAGATCTACTATTAATCAAGTCAAGACAAATGAACCAGAAAGAAAGAAAAAAACCTATTTCATCTTTATTTTTTTTTATTTTTTTTCATAAAAATATGTGTGTTGAAATTACTCCTTTTAAGAAAGCACCATCTTTCTTTCTCTGTTGAAATTAATCTTGTTATTGTATTTGATTCATGATTATGATAAATCAATCAAAATCTTGAACTTTTCTTTATTCATAGATAGCCCTATATGCTATCCTTTGATCTGTCTATAGCTTTTATGATTTTTTTTTTCTGTTCAAGTCATGTCATTTTCACTCTCTCTCTTTCAATATGAGCTCTCTGAATGAGTCTTCACAATTTCTATCTTTTATCATATATGGCTTGCAGTGTCAGAAAATATAAAAAGTGATGCGCACCATTGTGAGAGTGCTAACTTTTATCATATTTAAACCAATGTCATATTTGTCAGATCCTATAAATGCTTCCTCCTTGCTATAATAATAACTTGTTTATATTCAATTTCAATTTCATATAGTACTGCACATGCACACTTCTTCCTATACTTGTACAGTACACACACCTCTCTTTCTCTCTCAAGTCTCAACCTCTTATTTGTCCTCTTTTGTTTATGTTTTCAATTTTTCTTCAACTATCTAGTTGCATTAGTTTTCAAAGTTGGTGTTTGGAATGTGATAGTTGACTGAAAAAAACAAAAATAAATATTTGTACTAATATATTGACAGTGGGATGAAGAAAATGATGGTCCAAAGTATGAAATTAAAGCATTGAGAATCCCAATTAAGAGGATAGAGATATGACTATATAGGCTTGTAGCTTTCTTTCTGTTCCTCCTATTAATGACAGATTCTTTGAGGTTATTCAACTGATTTTAGTTTAGTTTATGGTAGGTACTAGTGAAATTGAAAGTGTGATACTATATAGTAATAAAGTTTTAATTTGCAGGTTAGTGTTCCATGCAGTAGCTTGCTGACTATAGTGACAGTTAGATGTGGTCATTGTGCTAATTTGCTTTCTGTTAACATGGGAGCAGCATCACTTCAATCTTTTACTCCTCAACAAGATCACCCTCAGGTATATAATTTCATTTTCAGTTGCTTAAATTGTTCTTAATTTGTGGTAAATGATTTCTATATATGGAAATGAAATGCTGCATAATACATATATGCTGAGTACAATAGTACAAACATATATACAAGTTTATTTCTAGACTATATGTATTTATCATCTCTAAATTTTTTAATTTGTTTGTAATGAATTTACAGAAACAGCAGCTTATAAACTGTCATCAAGAAGAAAGCAGGAAGGAAGTTGTAGGATCATCATCATCTTCTTCTTCAAAATGCAAAGCATTTCAGCCTTTAGTCCATGAGCAACCTAGAACTCCTCCAATTCGTCGTGAGTCTCACTCTCACACACACACACTCTATAATTTTTCCTCCTAAATTGATTAACCTTTTGATCTACTAGTTAAAAAAAATTAAAGAGAGACTGAAAATTTGAGATCCAATAACATGAAATGTCTCCTTTTCAAAAAAATAACATGAAATATCTCATCTAATTCTATGGTCAAAAACATTATAATTGAAGATCAAATTCAATTAGTAGATATTTAATTTTAAACTTGAATGAACTCTCAATTAAAAAAAAAAAAGCTCTCTCAAATATCACTCTTTCTTTTTTTTTGGTTACACAAATATCACTCTTTCTAACTTAACTCTTAAATATATAAAAAGGAAAAAGAAATATAAAAATAAGAAGTAAGTTTTAATTTTTAAATATATGAAATTTGTCACTTTAGTCGATATTCTTCATCTATGTTTGGATCTCCTCTATAAAAAAAAATTCTATGTTTGGATTAGCAGTGCTGTAGAAAATCTTGAATTCCAATCCATATTTACCGCAATTTTATTTTATGAAGCTACAAATTGAAGCTTCATGTTACTACATAGTGTCATCGAGGTTTGCTCCAAATTCAAACATATTAAAATGTTCAAGACTAAAGAGACAAATTTGCATATATTTTACGAATTGAAATAATGTTTTAAATACTTTAAAAAATTACTTATCATTTTAATAAATTTTTTGGGGTGTTGTAGTTTTATGTTGTATTACAAGGTTTGAGTACTCGTTTGTACTCCCTATTCTATATAACATGAGTAAAAAATTGATACCCCAAACTTTTGCTAGGTACTAGTACTACGTGTATAAAATTACTTTCAAGTTTAATATAATTTTAAAATGATTAAAATAAAACAAATTATATATTATTTAATGATTGGATATTGGGCAACTTATTACCCAATAAAACCTAAGGATACCATAATGTTAAACATGATATAATCAAAAATATATAATCTCTTCCGTCTTAAATATAAGCAAAGGTATATATATACTTATTTTAAATTTGTACCAAATACATTTACCTATTTACTTATATGTAAGACAATAGGGAGAGAGCACTTGAGGAAGTAAATTGATGATTTACTCACTTACTCATTGAGTTATTATATGAATAAAGTTAACCTGCGGGGTAATAGGAAGTTAGGCCACAGACTGAACAATTTCGTTACATAAGGTCAGGCTTGAAGGACAAAATAACTCAGACTAGTTAGTTACTACACAACAGGCAGAAGTTAATGAAAGTAAGGTCATGATTGAGGCCACTTGTCCTAAAAAACTGAGTATTTTTCATAAGAGTGGCCGTTCATCTCTCTGAGTATCCACTTTCTTTAGGTACAAAACTACCCAAAATTGGCCTATTATCTTCACATCATCATTTAACTGTCCCCAACTAGATGTTGACATTTCATAACAAAACTAACCCCATTCTTCAATTTATTGCAATCATGTTGTGCCCTAGAACTAGACCAATATACATGTGCAAATTAGTTTCACAAAATGATGTTAAAATCTTTATTCTAGCCACTCAATGATAATTAATTTACACATTTACTATTTTAAGTAAGAATTTTCATCTCGCTAGCTCTTTATAACACCTCATGATGATTCTTATTGGTAGTGGTACTTCAATACCATTAGTGGGTTGAGTTTGCCCTATAATGATAGTAATTCCTCCAACTAATGGGCCTGTTGTTAAATACTTTAGCCCCACTTGATTTTGGTCCTGGAAAAAAATCATATTTATTTCAACCAAAAAAAGAAAAGAAAATCATACATATACTTATTGTTACATACTATGCAATTTTTTTGATAGTTCAAGCTAATTATATAATTTTATGATTAACACAGCTCCAGAGAAGAGACAACGTGTTCCTTCTGCTTATAATCGGTTCATTAAGTAAGTAACATTTTCCAATTTGCAATTCTAAGATCAACTCTCCATCTATTCATGTATTTTTGTGTTTTTGGGTATCTACCTCTTCTAATTAATGAATATAGTTTAATAGAGTTTGATCTCAATGCTCTAAAAACAAGTTTAATCACAAAGTTGATGAGAATGATTATACATGATTCAATTGATATAGTGTTGGTCAAACTACACTAATTCATGAATATATTAAATAAAAAGACAATTAAGCTATAACCATAAATAATTTCATACAAATATAAATCTATGTCAGATGAATTTTCAGCAAATCAAAAGTTTAATTATTTTTAACAATAGAATACCTCTAATCCTAATAAAAAGATTATATGCAAAATAAGTATTGGAAACTCAGCATTATTTTAAAAGGAAAGTACATTTTAAAATTCAATGCAACATTAATTATTCTTTTGTCAATAATAGTCTTAGTTGTTGAAGAGATAAAAATAGATGAAATGAAATAATAATAGGCATACAATTGATTTTCTTGGTATGTATTTTTTATGTAACTTTTAAAACTAATTTTAGGCATACAATTTAATTAAGATGCTACTATATACTATCTTTCATCCCATGTATTAGAAAAGTTTGGATTTATTTTGCTCTAATTAAAAAATAAAATAAAAATAGTCACAAATGTTAGTCTTACTTAATAGCCCTATATGCATCTTGAGCTTATTAATTTTTGTTTTGTAGTCTTAAATATATATTGTATAGGGCTACCTAGAGGTAGCACTTTATCAGATATGTATGTAATCATTCAACAAAATTACAAATATTGAAGAGCCTTCTATCTTTTGGTTTCAGGGAGGAAATACAAAGAATTAAGGCTAGTAATCCAGATATCAGTCACAGGGAAGCATTTAGCACAGCAGCTAAAAACGTGAGTTCAAATCTTAATTTATAACTATTTTTCCTTTTTCAGCATATACATACATTCTGGCACATGATTGCATGAAAGTTCCATATCAATTTTTCCCATCACATGTGTGGCTTACACAATAAGAGATAACTTTGTCGTTTACATAATATTTTTGTTGAGACTTTACCATTCAAGGCCAAAGGTTAATATTGAAAAATTGAGGTATATATATAAAGGGAAACCAATAATATACTTCAAGTGCTTCCTATAACGAGGGTTGTTCTTATTTAAGCAACTATGGTGACAAATGTAAACGTGCATGCAAAGCTGGGAATTTTTTTATTTTTTTTATGACAAGGTTGAACAAATTTTCCTTTTTCTTTACATCACAATTAGGAACAGTCCAATTTTTAATAGAAAATGAGGTAAAGTTATAGTGGCCCTAGACTAGTACATACGTGATCATTCCATTTTATGCTTTCCTTTTGATGATATTATGCAACTATAAGGTTGACTTTGTGATTGAGGTGAAGAAGTTAAGAAGTGAAATAATAAATAGTAAAATTGTTCAAATTCCACCCTCAATACATTACTAGCATTTTCCCTATTAAAAATATTTTAACAATATTAATTTGCTAGCTATATAGACAAGGGAGGTGATGATACTTTGGTGCCACCCTCAATATAATATGACTATAACAAAAGATGAAATTATAACAACTTTTTTATAACCAATTTGCACCCTTCAATCTATATATATAGTTGGAATTGCAACTGCTAGATTGTGGTACCACTGATTTTTCTGCCAGCTGATTGTCTCGTTTAAATATGAATATATATGCAGTGGGCACATTTTCCTCACATTCACTTTGGGTTAAAGTTGGATGGTAGCAAGCAAGCAAAGTTGGACCATGGGGTTGGGGAAGCTACTCAAAAGTCTAACGGATTCTATTGA

Protein sequence

>MS.gene35514.t1

MSMDMNMMATNERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLSVNMGAASLQSFTPQQDHPQKQQLINCHQEESRKEVVGSSSSSSSKCKAFQPLVHEQPRTPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGSKQAKLDHGVGEATQKSNGFY