AlfalfaGEDB | MS.gene37725

M. sativa cultivar XinJiangDaYe / MS.gene37725

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37725.t1	XP_003620153.2	87.9	348	30	2	1	336	1	348	5.00E-159	570.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37725.t1	O81242	49.0	353	157	6	1	336	1	347	1.4e-74	281.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37725.t1	G7KKB7	87.9	348	30	2	1	336	1	348	3.6e-159	570.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene37725	0.81922	1.30E-52	-1.69E-46
MS.gene049159	MS.gene37725	0.852536	4.33E-61	-1.69E-46
MS.gene049435	MS.gene37725	0.818545	1.85E-52	-1.69E-46
MS.gene049850	MS.gene37725	0.801582	8.41E-49	-1.69E-46
MS.gene050020	MS.gene37725	0.825039	5.83E-54	-1.69E-46
MS.gene050226	MS.gene37725	0.808905	2.46E-50	-1.69E-46
MS.gene050227	MS.gene37725	0.802754	4.83E-49	-1.69E-46
MS.gene050228	MS.gene37725	0.807744	4.35E-50	-1.69E-46
MS.gene050442	MS.gene37725	0.822527	2.26E-53	-1.69E-46
MS.gene050605	MS.gene37725	0.802457	5.56E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene37725.t1	MTR_6g077860	94.588	425	10	3	1	413	1	424	792
MS.gene37725.t1	MTR_6g077860	94.615	390	9	2	1	378	1	390	735
MS.gene37725.t1	MTR_6g077860	94.359	390	9	3	1	378	1	389	730
MS.gene37725.t1	MTR_6g077860	94.509	346	7	2	1	334	1	346	657

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene37725.t1	AT1G48380	52.367	338	139	6	22	342	21	353	1.53e-100	303
MS.gene37725.t1	AT1G48380	47.967	369	139	7	22	342	21	384	7.02e-94	287

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Find 74 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGAACATGACTTTAAA+GGG	0.326016	6.3:+71888680	MS.gene37725:CDS
AACCAGCAGGCTGCGACTTC+TGG	0.236228	6.3:-71891194	None:intergenic
AACTGAACATGACTTTAAAG+GGG	0.647674	6.3:+71888681	MS.gene37725:CDS
AAGGGTCGAATGAAGTTATT+TGG	0.166724	6.3:+71887998	MS.gene37725:intron
AATAAATCTTCATCATCAAA+AGG	0.470118	6.3:+71891074	MS.gene37725:CDS
AATTCCAGTTTGGCTTCTTC+TGG	0.132448	6.3:-71888535	None:intergenic
ACAAACCAGGAAACGAGAAA+AGG	0.564488	6.3:-71886049	None:intergenic
ACCATGATGTTTAGCAACAA+TGG	0.563611	6.3:-71885985	None:intergenic
ACGTCCAGAGCCAGAGTCAC+CGG	0.540738	6.3:+71888762	MS.gene37725:CDS
ACTCTACAGTTCTCCAAAGG+TGG	0.579477	6.3:+71888052	MS.gene37725:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
chr6.3	gene	71885825	71893432	71885825	ID=MS.gene37725
chr6.3	mRNA	71885825	71893432	71885825	ID=MS.gene37725.t1;Parent=MS.gene37725
chr6.3	exon	71885825	71886154	71885825	ID=MS.gene37725.t1.exon1;Parent=MS.gene37725.t1
chr6.3	CDS	71885825	71886154	71885825	ID=cds.MS.gene37725.t1;Parent=MS.gene37725.t1
chr6.3	exon	71888001	71888111	71888001	ID=MS.gene37725.t1.exon2;Parent=MS.gene37725.t1
chr6.3	CDS	71888001	71888111	71888001	ID=cds.MS.gene37725.t1;Parent=MS.gene37725.t1
chr6.3	exon	71888490	71888576	71888490	ID=MS.gene37725.t1.exon3;Parent=MS.gene37725.t1
chr6.3	CDS	71888490	71888576	71888490	ID=cds.MS.gene37725.t1;Parent=MS.gene37725.t1
chr6.3	exon	71888673	71888890	71888673	ID=MS.gene37725.t1.exon4;Parent=MS.gene37725.t1
chr6.3	CDS	71888673	71888890	71888673	ID=cds.MS.gene37725.t1;Parent=MS.gene37725.t1
chr6.3	exon	71889401	71889491	71889401	ID=MS.gene37725.t1.exon5;Parent=MS.gene37725.t1
chr6.3	CDS	71889401	71889491	71889401	ID=cds.MS.gene37725.t1;Parent=MS.gene37725.t1
chr6.3	exon	71889812	71889967	71889812	ID=MS.gene37725.t1.exon6;Parent=MS.gene37725.t1
chr6.3	CDS	71889812	71889967	71889812	ID=cds.MS.gene37725.t1;Parent=MS.gene37725.t1
chr6.3	exon	71891056	71891095	71891056	ID=MS.gene37725.t1.exon7;Parent=MS.gene37725.t1
chr6.3	CDS	71891056	71891095	71891056	ID=cds.MS.gene37725.t1;Parent=MS.gene37725.t1
chr6.3	exon	71891187	71891236	71891187	ID=MS.gene37725.t1.exon8;Parent=MS.gene37725.t1
chr6.3	CDS	71891187	71891236	71891187	ID=cds.MS.gene37725.t1;Parent=MS.gene37725.t1
chr6.3	exon	71891333	71891381	71891333	ID=MS.gene37725.t1.exon9;Parent=MS.gene37725.t1
chr6.3	CDS	71891333	71891381	71891333	ID=cds.MS.gene37725.t1;Parent=MS.gene37725.t1
chr6.3	exon	71891849	71891883	71891849	ID=MS.gene37725.t1.exon10;Parent=MS.gene37725.t1
chr6.3	CDS	71891849	71891883	71891849	ID=cds.MS.gene37725.t1;Parent=MS.gene37725.t1
chr6.3	exon	71893207	71893254	71893207	ID=MS.gene37725.t1.exon11;Parent=MS.gene37725.t1
chr6.3	CDS	71893207	71893254	71893207	ID=cds.MS.gene37725.t1;Parent=MS.gene37725.t1
chr6.3	exon	71893406	71893432	71893406	ID=MS.gene37725.t1.exon12;Parent=MS.gene37725.t1
chr6.3	CDS	71893406	71893432	71893406	ID=cds.MS.gene37725.t1;Parent=MS.gene37725.t1

Gene Sequence

>MS.gene37725

ATGGCACGACCAAAGACGAAGAAGAAAACACGCGACGACGAAGAAGCCGACGCAACAAACCCAGAAACCATAGAACGCAAGAGACTCAAATCCTTAGCATTTTCAAACAACGTGCTTTCAGAAACCAAAACTAGAAGTTCAATTCATCTTAATCCTTCTTCCATTGTTGCTAAACATCATGGTAAAGATATTATTAAGAAGTCTCAGAGGAAGAGTAGTAGATACCTTTTCTCGTTTCCTGGTTTGTTTGCTCCTATTGGTGGCGGGAAGATTGGCGATCTTAAGGATTTGGGAACCAAAAATCCAATTCTTTACCTCGATTTCCCTCAGGTTGTTCTTTACTTTTGTGTTTTAAAAATTCAATTTTTGAGGGTTTTTGGTTGTGGGTTTGTTTTGTTTTTGGGTTTTAAATTATGTATGACAAGGAAATTGGGTTTGGTTTATTAATTTTGTTTTGAGCTATGAACCACTGACACAGAGATTGGACACGACACTGACATGTAGACACTAATAATAATTTGATAAAATAGAAGTGATTGAATGTAATTGTCTATGTCAGTTGTTGCGACAATCAGAGATTGGACACATTTTCAATCTGAAGTGTCAGTGCTACTACTACATAGGTTTTGAGTGTAACTCTACTATCAAATTAAGACTAGGAAATTTTGTTAGCTTTAGTAATTTTTTGAATGATGATTTGATTGTTTTGAGATATGAATCACTGACACTGATTGGACTTGATATAGACACTGACATGTGGACACTAGTAATAATTTGAGAAAATGGAAGTGACTGAATATAACCACTTGTGTTGATGCCTTCAATGTGAAGTGTTGGTGCTACATAGGTTTTGAGTGTAACACTACTTGCATAAGCATTGGACACAAAGTTGACCCTGATAATGAATTGATTGAATGTAACCACTTGTGGCATTGTTGTGTCGGTAAGACACTGGACATGCCGATGCTCCTTATATTTTGAGTGTACCACTTCTTGCTCACGCATTGCACACAGTACTGATATGTAAACACTGATAATAATTTGAGAAAATAGATGTGATTGAATGTAACTGCTTGTGTTGTTGTTGTTGTGTCGGTAAGACACTAGACACACCTTATTGCTGAAGTGTTTGTGCTTTATAGATTTTGAGTGTGACTCCTCTTGCACATACATTGGACACAACGTAAACACTAATAACAATTTGAGAAAATTGAAGTGATTGAATGTAACCACTTGTGTCGTTGTTGCATCTCGTCAGACACTGTACACGTCTGTCGTTTGAAGTGTTGGGTGCTACGTAGGTTTTGAGTGTAACTCTACTTGAACAAACATTGTACACGACACAGACACTGTACATGTCTTTAATTTGAAGTGTTGGGTGCTACATAGGTTTTGAGTGTAACTCTGCTTGAACAAACATTGTACACGACACAAACACCGACATAGCTACTGACATGTAGACATTAGTTTGAGAAAATAGAAGTGATTGAATGTAATCACTTGTGTCGGTTAGACACGAGCCAAACTTTCAATCATGTGTGCTACATAGGTTTTACGTGCAACTCTAACTGCAATTCAGTCATCTAATTTGACTGTTTTACAGGCAGAAATTGAGAGCAACTTATGAAGTTGTTGTAATGGATATGACAATTTTATTTTTATTGCTATCAGTTAGCATGTCAACTGGAATTGTAACAGGAGAGTTGAATGACTAATAACAAACCAAGTTTACTGGTGAAATATGGGTTTAGTTTTGGATTAGTTTTAGTTCACAAGAACTTTTTAACTAAATAAGATTATGATTCTTTACTTATGATGGAAGTCCTTGTAAACCTACAAGTATTTATGATAAAGTCAATTGAGAGTTTCTGAAAAGATTGGGATACAGTAATTATTTGCACGTTTTAAAAAATCAGACTTATTGCAGGACTTTTTGACTGTTTTTAACGTAACTCCTACACAAATTTGGTTAATTTGCCTTCTGTGTTTGTTGTTAACTAATCTGACAGGCTCGCCTGCAAGTGGCATGCATACCTGGTTGTAATAAACAAAACTTACTTAACTCAGCTAAATGATAACTTGTTGATCTAAATCTTGCTGAACAGTTTCACTACGTTTGATTTGTTATTTTTGTATTGGTATCTGATGATGTGCGTTTTCACTTTCCCTCTACAAGGGTCGAATGAAGTTATTTGGGACTATCTTGTATCCAAAGAATAGATACTTGACTCTACAGTTCTCCAAAGGTGGAAAGAGCGTGATGTGTGAGGATTATTTTGATAACATGGTTAGTTTTTTTACCATTCATGTTTTCGTTATTATTTTTTTTTTTGAGACATGAACTAGAAGAAGGTATATTAGTATTCAAATTATAAGGGGACTCGGTGAAAGAACTTTCTTGTGTGTATTGACTTTCTTTTTAATATATCGCGAATGTAATTTCATTACGAATTTCTCTCTCGTTCATATAATATGCATATCTAGATCTAACAATGCTTGTGCTCCTCCCATTCCTTTTTATCCTAACTTCTTGTTGGTTTAGGAATGCATACTTTCTGCATCTCTTTTTGCTTCTTCATTTACAAATTTGTATCTTCTGGCACTAAGCTTTGTGAGTACGAATACCTATGTTCCTTATTTACGAGCAATTTCTTGATTGTACTAGATTGTATTTTCGGATGCATGGTGGATTGGGACGAAAGACGAGAACCCAGAAGAAGCCAAACTGGAATTTCCCAAGGAACTGTATGAGGTTAGGAACTTTTGGAATTGAATAGTTACCTAGTCATAAGAAGGAACATCACTTATTTGGCATGAAGAGAAATTAAGTCTTTTTTCTTGGTTTCAGGGCAAACAAACTGAACATGACTTTAAAGGGGGTGCGGGTGCAGGTGCAGCTTCTGTAGTTAATCACGGTGTTTCCAAAACCAAAATAAAACGTCCAGAGCCAGAGTCACCGGAGACACCTCTTGAAGATGATTTATCAGACAGTGAAATCGACTTAAAAGACACAACAGAATTGGTTCCAGTTCGCCAGTCAGCGAGAACTGTAAAAAAATCATACAAGTATAAGATTCTTCTATCTAGTTTACTTGAGTCTGTTGCTCTCCAAAATAAAATCATGAAAAATTAGTTTTTGTGCAACAAAACATTATTCTCGCTTTTTAGTTGCCGTTTTAAGGTTATTTACACATACTATGAAAACCAATACATTTTGTTATTTTTAATGCAATCATTTGTCTTTTTCCAATAGTCTCTTTAACTAATTATTATCTCATTTCACCTATTTATCTCTCTGCAATAAATAGTTAAGAGAATTATTGACAAAACAATAATTAATGTTACATTGAACTTTGAAAAAAACAAGTAAATAGAAACCAACATTTTCGAGTTAAAAAGAAATTGAGTGACCATTTCTCATTTGCTGATAGGGCCAATGGCCCAGTTTTCCAAATTTTTTAATGTTTAGTTTCTTTGTGATTGTTTAGTTTTGCGTTATTTAACTTAAAGTGGAACGTCTGATGTAACTAAAAGTTGTATCAAAGTCATATTCATATAGTTCTTTTGTTTGGCCAGATTTGCTGAAATTTCTTCTGGTGATGATTCTGGTAAAAGCAGCCCCGACCTTTCTGAACATGAAGAAAAAGCGGTGGAAGTTGATACTGATGTAAATGATCGTACCAGCTCAAATATCCTTATAGGCATTTTGGCATCCCCGTAATACCAGTGTTGAAAAATGCAAACTTTACCCTTTCTTGCAATTCTTATGTAAAATCTATCCTTGAATTTTGCATTTATTTTTACTGTTACAACAAAAGGACCCTTACAGTTTTTATAAGTTGATTGGATAACAGTTTCAGTTTTATTTTTGTTTTGATCCTTTTTTTTTTGTTACAGCCAGTCAACCTGAAATTTAGAACTTCATTGATCTTATATTCTATATTATCAGGAAATTTATATTTTATCTTCCTTAATTTAAGAGTACAGAAAGAAACTGCAGTTATTGACATTGACGATGAGGATGATGCTCCAAAAGATCAACTCCCCATGGAAAATAAAGAACCTGCTTCAGTGTCAAAAGCTAAAAAAGGGTTACTTGTTCAGGCTACTATATCCTCATTATTCAAGAAAGTGGAAGTAAAGGTATGCTTTTGAAACTGTTTGCGCTAGAGTTGGGACTTAGCAACTTCAAATAAATATTTTTACAGCCCTTATATTTTTCTAAATGTATAACTTTGTTGTTCATGCCAATATTAGATTCCACTCTTTTAGTACATCAAAAGAATTATGTTAAATTGGTATCTAAGATATGGGATGCTTTGAAGTTATGTGTTGGTTGTATCGCTAAGAAAAAGTTTATCTTGATCTATTGATAGTCATTGAGAGTTTGAGAGAATCTGAATGGATATTTTTGAATTCTGAAGTGTTGGCTTCCAACCAATTGTACGAGTGCAGTACTTATAGACCAAGTTATCATTAAAACTGTAACTGACAGATTCTGTTACTAATAGAATCCAATTACTAGGTTGCAGTATGATCATTCTAACAAGTATAATAAAGGCCCAATCTGCAAACCAATGAGCCCAAGGCCCATTACCACATAGAAAACACCAGAAATACAAATTCACAAGTATACTTCTAAGGTCTAATAGTGCTACATTTAAGGTGGCTAGAAGGAAATATATTTAAAACACAATGAGCCTTTATTGTGTGTACATGGTTTTGTGGTGTCAAAAATTGATTTTGAAATGATTTGATTCTGCAAAATTGTTACCTACTAAAAGTAAGTGGAATGTAAATTCATTTATGTTTGCATGCATTCATCTATAACGGGTTGAACAATAAATTCGAGGCTAAAATTCAATTGTAGGGAAAAAAACTTCAAATTTTAGCTTCAAGTTAGAATCAACTCTGGAGGTAAAATCAATTCTACTTGACATATCCTAACATGTCAAAATCAATTTTACACCTCTAGAATCAATTTTGACTCCTCCACCACAAGTGGAACCAAACATACACTTTATCTATTTGATCAAACCTTCTTAAGACTAAGCATGTGGTTCATGATTGTTTATATCTAGCAAGTATTGGTATATTACTATGATTTGGAAGACCTTAGTTCCACTTTAGTTTTGCACCTTATTAAATTGAATCTGAATCATTTAAATTTGCTTTCTTTAATGTTCAATAGCAGTCAAATTAATCATCTCACAAAAATCTTATATTTTCAGAAGGCTGCAACCAATTCAAATAAATCTTCATCATCAAAAGGTTGTCTTTTTTTTCCCAGTCTCTTTACATTATTATGAGAATGGTTATGAGGAAGATTGAATATAGTTTTATTATTTTTTTTCTTTTTCAGCTTCTGGCCAGAAGTCGCAGCCTGCTGGTTCGAAAAGAAAGATTGAACTGGTTGATTTTTTTAACTTGATTTTCTGAATCTTTTTCTTCATACAAGCGCTTCGTGTTGTAGTAAAACATTAACTGATTTATTGTCTGTTGTTGTAGGATGAAGGACCCAAGAAAAGGGCAAGAAAGACCAAGGACAAAAATCCAGGTGAATATACTTTTTTTTGTTTCTTCTGATGGTTTTGTGGTGTTATCATTATAAAAGAGCAATTCAATCTAGATTATTTTATGCATCTTAGGATCATTCATTGGTCAGACTACACAGGGCAAAATTGTTTGTCCCTTATTGTAGCAAAACAGAGAGAACACCATGAACTTGGGCTAAGGATCTATTTTAGACCGTTATTTTTAGATATATTTAGTATAGCAATTGGGATTCCTCTTGGGACTTCTTCTTGTAGTTACTTAGTCTTTCATATAAAATTGTGTCTGGTAAATGCTGTCAGACCTACACAAACTTCTGCCTTTGTATATATCATCAACCTAGTTGAAACAAGCCATGTGTTCTCTTTTCAGTTGACTACCAATCTACATTAATTACTTTTTTTTTTCTTTTCTTATTAAGTTGTTGCATAAATGAAACTTGGAATAACTTACCATATGTGTAAATTTTAGGTGAAAAAAAGAAGGCAAAAAGCAAGGAAAGTGAGGTAAGATTTTTTCATTCTTGGAACTTTATGCCGTTTTGTCTGTGGGTTTAGCTATTGAATCTTCTTTCACTGTGTTCTTATGTTTCATGCTTGATCAAAATGCTACCCGACCCAACAACTGATCTTTAAGGAAACTTGTGACTTTGAACATAATTGCTAGAAGTTAATTCTCACATTTTAGTTTTTTTTTTTAGCTATAGGAAGTAGGAACATTCTTAAACTGGTTTATACATATTTTAAACCAATAACTTAGTTCAATTTGACCCCTTGGCAATTTTGTACCTTTACTTGCATCTTGGCTGTTTCACCGCTCGAGTTTTAATCTGTACTTCTGTATTGGCTTTCTCTCCTCTCTCTAACAATCTTGTTTGGATTAATGTTATGGTCCATGCTTTTTATGCTGTTCGTTCTGTTGGGCTTCCAAACTCTTGACACTGTATACACTCTGAAAATTAACTATTATTAATGTCTCGAGGGTCATGAGTGGAAAGGAGACAATACATTATACATTTGTATAAAAAAAAGTGTTGAAATTTGGGGCCTAATCCTTACAAAACCGGCTTGTAAGTTAAGGAGTGCCACCTCTTTATAAACTCTTCTCAAGAGTCCCATCTATCCGATGTGGGACTAAATCCACCCCCTTAAAGCCAACACAATGAAGGTTTTGGAGGCTGCAATGAAGGCAAACCAAAGGCCGCAATTTAGGCGACTAGGGGCGGACCGCAATTAAGGCGGAATTTCCAACAAAAAGAAAGCAAACAAAATGTTTATCTTTAGTCTTCAAGTTATATTAAGATCATACAATTGTTGCTAAGTTTCTGTGGATAAGGTGGTTTCTCACAAGTGCGCGGTGCGCGCTCTCAAATTTTTGTGTATACATTTATCAATAATACCCAGAGAAATTATACTGTTTGATTATCTGTATTGTCAATTGTGGATCAAGGAAAATAGCGGTTTGGTCAAATTCCGCTACACAACAGTACTATAGCGCCATTATAGCCGCTATTTGACTACATTTTATACTAAATAGCGTATCCCAGAACAATAGAGAATTGTTCAAATTCCACTACGCTATAGCGCTATATCTGTTATTTGACACAGTTGATTATGACTGTGTTATATGTTCCATCTTTAGATTGGCAGTGCTTTTATGTTACAAGTAACCCTATATTTCCATTTTCCATTTCATTGAACTCTTTACTCTAGAAAAAACTATCATCTGTCTTATACAAGCTCTTATATTTCTTCAGGAAATATGAAATGTTAAATCAGTCTAACAGTTTTCTTTGAGCCGGGAGTTTGACATTTACATTATGGTTGTAGGTTGAAGACGATGATGATGACATTGAAGAGTTTTCAAACGCTTCAGAGGTATTTCTTCCCAACTTAACACTTACCTGACATCGCATACATTGATTCTCACAAATATGATGCTGGTTTTTTTACTGTCACTAGATTATAGCTGGTACGGAGTTGAACCTTTTAATGTCACTGATTATGTTTGTAAATGTTCTATTTTTAGGATTCTGACGAAGATTGGGCTGCTTGA

Protein sequence

>MS.gene37725.t1

MARPKTKKKTRDDEEADATNPETIERKRLKSLAFSNNVLSETKTRSSIHLNPSSIVAKHHGKDIIKKSQRKSSRYLFSFPGLFAPIGGGKIGDLKDLGTKNPILYLDFPQGRMKLFGTILYPKNRYLTLQFSKGGKSVMCEDYFDNMIVFSDAWWIGTKDENPEEAKLEFPKELYEGKQTEHDFKGGAGAGAASVVNHGVSKTKIKRPEPESPETPLEDDLSDSEIDLKDTTELVPVRQSARTVKKSYKFAEISSGDDSGKSSPDLSEHEEKAVEVDTDKETAVIDIDDEDDAPKDQLPMENKEPASVSKAKKGLLVQATISSLFKKVEVKKAATNSNKSSSSKASGQKSQPAGSKRKIELDEGPKKRARKTKDKNPGEKKKAKSKESEVEDDDDDIEEFSNASEDSDEDWAA