Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40608.t1 | XP_003610822.1 | 99.4 | 157 | 1 | 0 | 1 | 157 | 37 | 193 | 2.10E-81 | 311.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40608.t1 | Q9M8T9 | 65.6 | 157 | 54 | 0 | 1 | 157 | 50 | 206 | 7.5e-56 | 218.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40608.t1 | B7FKF5 | 99.4 | 157 | 1 | 0 | 1 | 157 | 37 | 193 | 1.5e-81 | 311.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04918 | MS.gene40608 | 0.805471 | 1.31E-49 | -1.69E-46 |
| MS.gene04919 | MS.gene40608 | 0.814307 | 1.65E-51 | -1.69E-46 |
| MS.gene04920 | MS.gene40608 | 0.830917 | 2.24E-55 | -1.69E-46 |
| MS.gene049283 | MS.gene40608 | 0.865038 | 7.89E-65 | -1.69E-46 |
| MS.gene049419 | MS.gene40608 | -0.831027 | 2.11E-55 | -1.69E-46 |
| MS.gene049499 | MS.gene40608 | 0.862311 | 5.55E-64 | -1.69E-46 |
| MS.gene049680 | MS.gene40608 | 0.827289 | 1.70E-54 | -1.69E-46 |
| MS.gene049983 | MS.gene40608 | 0.834712 | 2.56E-56 | -1.69E-46 |
| MS.gene050646 | MS.gene40608 | 0.82248 | 2.32E-53 | -1.69E-46 |
| MS.gene050654 | MS.gene40608 | 0.827079 | 1.91E-54 | -1.69E-46 |
| MS.gene050752 | MS.gene40608 | 0.803584 | 3.25E-49 | -1.69E-46 |
| MS.gene050945 | MS.gene40608 | 0.819394 | 1.19E-52 | -1.69E-46 |
| MS.gene051003 | MS.gene40608 | 0.828516 | 8.61E-55 | -1.69E-46 |
| MS.gene051184 | MS.gene40608 | 0.801932 | 7.13E-49 | -1.69E-46 |
| MS.gene051343 | MS.gene40608 | 0.818493 | 1.90E-52 | -1.69E-46 |
| MS.gene051597 | MS.gene40608 | 0.837172 | 6.08E-57 | -1.69E-46 |
| MS.gene051676 | MS.gene40608 | 0.805745 | 1.15E-49 | -1.69E-46 |
| MS.gene051699 | MS.gene40608 | 0.832859 | 7.43E-56 | -1.69E-46 |
| MS.gene051831 | MS.gene40608 | 0.800819 | 1.21E-48 | -1.69E-46 |
| MS.gene051832 | MS.gene40608 | 0.802395 | 5.73E-49 | -1.69E-46 |
| MS.gene051902 | MS.gene40608 | 0.836535 | 8.84E-57 | -1.69E-46 |
| MS.gene051975 | MS.gene40608 | 0.83206 | 1.17E-55 | -1.69E-46 |
| MS.gene052072 | MS.gene40608 | 0.834412 | 3.04E-56 | -1.69E-46 |
| MS.gene052533 | MS.gene40608 | 0.81121 | 7.85E-51 | -1.69E-46 |
| MS.gene052889 | MS.gene40608 | 0.813278 | 2.78E-51 | -1.69E-46 |
| MS.gene052932 | MS.gene40608 | 0.804133 | 2.50E-49 | -1.69E-46 |
| MS.gene052954 | MS.gene40608 | 0.82442 | 8.15E-54 | -1.69E-46 |
| MS.gene053045 | MS.gene40608 | 0.803845 | 2.87E-49 | -1.69E-46 |
| MS.gene053295 | MS.gene40608 | 0.801405 | 9.14E-49 | -1.69E-46 |
| MS.gene053298 | MS.gene40608 | 0.825859 | 3.73E-54 | -1.69E-46 |
| MS.gene053340 | MS.gene40608 | 0.825963 | 3.52E-54 | -1.69E-46 |
| MS.gene053456 | MS.gene40608 | 0.814479 | 1.51E-51 | -1.69E-46 |
| MS.gene053879 | MS.gene40608 | 0.837738 | 4.35E-57 | -1.69E-46 |
| MS.gene053931 | MS.gene40608 | 0.824815 | 6.58E-54 | -1.69E-46 |
| MS.gene053963 | MS.gene40608 | 0.863092 | 3.19E-64 | -1.69E-46 |
| MS.gene054222 | MS.gene40608 | 0.83904 | 2.01E-57 | -1.69E-46 |
| MS.gene054403 | MS.gene40608 | 0.806283 | 8.87E-50 | -1.69E-46 |
| MS.gene054479 | MS.gene40608 | 0.818565 | 1.83E-52 | -1.69E-46 |
| MS.gene05469 | MS.gene40608 | 0.816352 | 5.78E-52 | -1.69E-46 |
| MS.gene054892 | MS.gene40608 | 0.82223 | 2.65E-53 | -1.69E-46 |
| MS.gene054893 | MS.gene40608 | 0.831389 | 1.72E-55 | -1.69E-46 |
| MS.gene054957 | MS.gene40608 | 0.832888 | 7.31E-56 | -1.69E-46 |
| MS.gene055150 | MS.gene40608 | 0.822014 | 2.97E-53 | -1.69E-46 |
| MS.gene055841 | MS.gene40608 | 0.803131 | 4.04E-49 | -1.69E-46 |
| MS.gene056045 | MS.gene40608 | 0.817843 | 2.67E-52 | -1.69E-46 |
| MS.gene056181 | MS.gene40608 | 0.810189 | 1.30E-50 | -1.69E-46 |
| MS.gene056699 | MS.gene40608 | 0.84217 | 3.05E-58 | -1.69E-46 |
| MS.gene056776 | MS.gene40608 | 0.801025 | 1.09E-48 | -1.69E-46 |
| MS.gene056787 | MS.gene40608 | 0.806491 | 8.02E-50 | -1.69E-46 |
| MS.gene05686 | MS.gene40608 | 0.804005 | 2.66E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene40608 | 0.847156 | 1.38E-59 | -1.69E-46 |
| MS.gene057102 | MS.gene40608 | 0.853938 | 1.72E-61 | -1.69E-46 |
| MS.gene057155 | MS.gene40608 | 0.809335 | 1.99E-50 | -1.69E-46 |
| MS.gene057208 | MS.gene40608 | 0.831422 | 1.68E-55 | -1.69E-46 |
| MS.gene057622 | MS.gene40608 | 0.808655 | 2.78E-50 | -1.69E-46 |
| MS.gene057890 | MS.gene40608 | -0.824007 | 1.02E-53 | -1.69E-46 |
| MS.gene057999 | MS.gene40608 | 0.835024 | 2.13E-56 | -1.69E-46 |
| MS.gene058008 | MS.gene40608 | 0.836214 | 1.07E-56 | -1.69E-46 |
| MS.gene058009 | MS.gene40608 | 0.803566 | 3.28E-49 | -1.69E-46 |
| MS.gene058159 | MS.gene40608 | 0.854547 | 1.14E-61 | -1.69E-46 |
| MS.gene058279 | MS.gene40608 | 0.817195 | 3.74E-52 | -1.69E-46 |
| MS.gene058592 | MS.gene40608 | 0.840631 | 7.74E-58 | -1.69E-46 |
| MS.gene058781 | MS.gene40608 | 0.814736 | 1.32E-51 | -1.69E-46 |
| MS.gene05878 | MS.gene40608 | 0.822547 | 2.24E-53 | -1.69E-46 |
| MS.gene059146 | MS.gene40608 | 0.849417 | 3.28E-60 | -1.69E-46 |
| MS.gene059170 | MS.gene40608 | 0.801457 | 8.92E-49 | -1.69E-46 |
| MS.gene05952 | MS.gene40608 | 0.869523 | 2.90E-66 | -1.69E-46 |
| MS.gene05985 | MS.gene40608 | -0.849343 | 3.44E-60 | -1.69E-46 |
| MS.gene059901 | MS.gene40608 | -0.803821 | 2.90E-49 | -1.69E-46 |
| MS.gene060012 | MS.gene40608 | 0.814559 | 1.45E-51 | -1.69E-46 |
| MS.gene06011 | MS.gene40608 | 0.810306 | 1.23E-50 | -1.69E-46 |
| MS.gene060244 | MS.gene40608 | 0.806666 | 7.36E-50 | -1.69E-46 |
| MS.gene060259 | MS.gene40608 | 0.816588 | 5.12E-52 | -1.69E-46 |
| MS.gene060365 | MS.gene40608 | 0.80933 | 2.00E-50 | -1.69E-46 |
| MS.gene060527 | MS.gene40608 | 0.818836 | 1.59E-52 | -1.69E-46 |
| MS.gene060763 | MS.gene40608 | 0.805853 | 1.09E-49 | -1.69E-46 |
| MS.gene060777 | MS.gene40608 | 0.808421 | 3.12E-50 | -1.69E-46 |
| MS.gene060840 | MS.gene40608 | 0.80275 | 4.84E-49 | -1.69E-46 |
| MS.gene060932 | MS.gene40608 | 0.81055 | 1.09E-50 | -1.69E-46 |
| MS.gene060933 | MS.gene40608 | 0.837332 | 5.53E-57 | -1.69E-46 |
| MS.gene060935 | MS.gene40608 | 0.858263 | 9.29E-63 | -1.69E-46 |
| MS.gene060937 | MS.gene40608 | 0.871869 | 4.92E-67 | -1.69E-46 |
| MS.gene061100 | MS.gene40608 | 0.808763 | 2.64E-50 | -1.69E-46 |
| MS.gene061160 | MS.gene40608 | 0.81202 | 5.23E-51 | -1.69E-46 |
| MS.gene061188 | MS.gene40608 | 0.802471 | 5.52E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 36 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATTCGTGCACTACGTAAA+TGG | 0.221441 | 5.3:-2239523 | MS.gene40608:CDS |
| GGCCAAAGTGATGAACTTAT+TGG | 0.280025 | 5.3:-2241259 | MS.gene40608:CDS |
| GGGAGTAGTGGAAGCATATA+GGG | 0.323949 | 5.3:-2239821 | MS.gene40608:CDS |
| CACTAAAGTCTGGTCAGATT+TGG | 0.334799 | 5.3:+2239858 | None:intergenic |
| TATTCGTGCACTACGTAAAT+GGG | 0.359781 | 5.3:-2239522 | MS.gene40608:CDS |
| TGGGAGTAGTGGAAGCATAT+AGG | 0.379806 | 5.3:-2239822 | MS.gene40608:CDS |
| GCATATAGGGGCCTTGGAAT+AGG | 0.403458 | 5.3:-2239808 | MS.gene40608:intron |
| CACCAGCTTCTTCTTTGATA+CGG | 0.412039 | 5.3:-2239711 | MS.gene40608:intron |
| GTGGAAGCATATAGGGGCCT+TGG | 0.421160 | 5.3:-2239814 | MS.gene40608:CDS |
| AGTTCATCACTTTGGCCATT+CGG | 0.428159 | 5.3:+2241265 | None:intergenic |
| ACCAGCTTCTTCTTTGATAC+GGG | 0.449831 | 5.3:-2239710 | MS.gene40608:intron |
| CAAGTGTGTTAGAAAGCTGC+AGG | 0.455738 | 5.3:-2239584 | MS.gene40608:CDS |
| ATCCAATAAGTTCATCACTT+TGG | 0.471996 | 5.3:+2241257 | None:intergenic |
| TGCACTTACAATGGCGAGCA+AGG | 0.487162 | 5.3:+2239490 | None:intergenic |
| TTGTAGATAGTGGATTTGCT+TGG | 0.513932 | 5.3:-2239892 | MS.gene40608:intron |
| CGAAGATGTGGTGAACAGAC+GGG | 0.516575 | 5.3:-2241323 | MS.gene40608:CDS |
| TTTAGTGTATGTTCTAACAC+TGG | 0.518861 | 5.3:-2239842 | MS.gene40608:CDS |
| TTAGAACATACACTAAAGTC+TGG | 0.520023 | 5.3:+2239848 | None:intergenic |
| TCGAAGATGTGGTGAACAGA+CGG | 0.541792 | 5.3:-2241324 | MS.gene40608:CDS |
| CAGACGGGATATTGTGTCGT+GGG | 0.543303 | 5.3:-2241308 | MS.gene40608:CDS |
| TGTTCTAACACTGGGAGTAG+TGG | 0.563129 | 5.3:-2239833 | MS.gene40608:CDS |
| TGTTCTTGCAAAAGAAAGTG+AGG | 0.573579 | 5.3:-2241218 | MS.gene40608:intron |
| AGCTTCTTCTTTGATACGGG+AGG | 0.591740 | 5.3:-2239707 | MS.gene40608:CDS |
| ACAAACTGCTACCTATTCCA+AGG | 0.593056 | 5.3:+2239797 | None:intergenic |
| TTAGTGTATGTTCTAACACT+GGG | 0.599355 | 5.3:-2239841 | MS.gene40608:CDS |
| ATTCGTGCACTACGTAAATG+GGG | 0.616046 | 5.3:-2239521 | MS.gene40608:CDS |
| GTTGATCTTAGTCGACCGAA+TGG | 0.627310 | 5.3:-2241280 | MS.gene40608:CDS |
| GGAGTAGTGGAAGCATATAG+GGG | 0.641948 | 5.3:-2239820 | MS.gene40608:CDS |
| AAGTGTGTTAGAAAGCTGCA+GGG | 0.647080 | 5.3:-2239583 | MS.gene40608:CDS |
| TTCGTGCACTACGTAAATGG+GGG | 0.654674 | 5.3:-2239520 | MS.gene40608:CDS |
| ACAGACGGGATATTGTGTCG+TGG | 0.662598 | 5.3:-2241309 | MS.gene40608:CDS |
| TCACGTGCAAGTAAACCGCT+CGG | 0.669384 | 5.3:+2239653 | None:intergenic |
| AAGCATTCCAACGTGCCGAG+CGG | 0.675262 | 5.3:-2239668 | MS.gene40608:CDS |
| AGACGGGATATTGTGTCGTG+GGG | 0.679193 | 5.3:-2241307 | MS.gene40608:CDS |
| AAGTAAACCGCTCGGCACGT+TGG | 0.692398 | 5.3:+2239661 | None:intergenic |
| TTATTGGATTTGTAACAGCG+CGG | 0.789219 | 5.3:-2241243 | MS.gene40608:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTATTTATTTTAATATTCT+TGG | - | chr5.3:2240108-2240127 | MS.gene40608:intron | 10.0% |
| !! | ATTAAAATAAATACTCCAAA+TGG | + | chr5.3:2240103-2240122 | None:intergenic | 15.0% |
| !! | TTAAAATAAATACTCCAAAT+GGG | + | chr5.3:2240102-2240121 | None:intergenic | 15.0% |
| !!! | ATTTACTTGTTTTCTATAAA+GGG | - | chr5.3:2239778-2239797 | MS.gene40608:intron | 15.0% |
| !!! | ATTTATTTTAATATTCTTGG+AGG | - | chr5.3:2240111-2240130 | MS.gene40608:intron | 15.0% |
| !! | AATAAACAATTATCAGCAAA+AGG | + | chr5.3:2240910-2240929 | None:intergenic | 20.0% |
| !! | AATATTATTCTTGTAGATAG+TGG | - | chr5.3:2240938-2240957 | MS.gene40608:intron | 20.0% |
| !! | ACTACAATATATATTCCTAA+TGG | + | chr5.3:2240228-2240247 | None:intergenic | 20.0% |
| !! | ATAAAAATGAATCATAGTGT+TGG | + | chr5.3:2241301-2241320 | None:intergenic | 20.0% |
| !! | ATGCATACAGTTATATATAA+AGG | + | chr5.3:2239655-2239674 | None:intergenic | 20.0% |
| !! | ATTAGGAATATATATTGTAG+TGG | - | chr5.3:2240227-2240246 | MS.gene40608:intron | 20.0% |
| !! | TATAACACCAATTGATAAAT+TGG | + | chr5.3:2240768-2240787 | None:intergenic | 20.0% |
| !! | TGCATACAGTTATATATAAA+GGG | + | chr5.3:2239654-2239673 | None:intergenic | 20.0% |
| !! | TTATTCACCAATTTATCAAT+TGG | - | chr5.3:2240758-2240777 | MS.gene40608:intron | 20.0% |
| !! | TTGAAATATTACATCAAACA+TGG | + | chr5.3:2239968-2239987 | None:intergenic | 20.0% |
| !!! | AAAAAAAAAAGAGTATTGTC+TGG | + | chr5.3:2240641-2240660 | None:intergenic | 20.0% |
| !!! | CATTTTGATTATAACTTCTA+TGG | - | chr5.3:2240268-2240287 | MS.gene40608:intron | 20.0% |
| !!! | CTACAGCATATATTTTTAAT+AGG | + | chr5.3:2240321-2240340 | None:intergenic | 20.0% |
| !!! | GATTTACTTGTTTTCTATAA+AGG | - | chr5.3:2239777-2239796 | MS.gene40608:intron | 20.0% |
| !!! | TTTACTTGTTTTCTATAAAG+GGG | - | chr5.3:2239779-2239798 | MS.gene40608:intron | 20.0% |
| !!! | TTTTCATAACAAGTTGTATT+GGG | - | chr5.3:2240550-2240569 | MS.gene40608:intron | 20.0% |
| !!! | TTTTTCATAACAAGTTGTAT+TGG | - | chr5.3:2240549-2240568 | MS.gene40608:intron | 20.0% |
| ! | ATCGAATGAGATAGTTTAAT+CGG | + | chr5.3:2240857-2240876 | None:intergenic | 25.0% |
| ! | GCATACAGTTATATATAAAG+GGG | + | chr5.3:2239653-2239672 | None:intergenic | 25.0% |
| ! | GTTAAACTAAGAATTACAGA+GGG | + | chr5.3:2240888-2240907 | None:intergenic | 25.0% |
| ! | TAGATTACCAATCATATTAC+TGG | + | chr5.3:2241096-2241115 | None:intergenic | 25.0% |
| ! | TTTATGAGTAGTTATCCATT+AGG | - | chr5.3:2240210-2240229 | MS.gene40608:intron | 25.0% |
| !! | ACATAACACATACTTTGTTT+GGG | + | chr5.3:2239856-2239875 | None:intergenic | 25.0% |
| !! | AGATTGATAGACTCAAATTT+TGG | + | chr5.3:2239929-2239948 | None:intergenic | 25.0% |
| AAATAAATACTCCAAATGGG+AGG | + | chr5.3:2240099-2240118 | None:intergenic | 30.0% | |
| AACTTACAATTCACACAAAC+TGG | + | chr5.3:2240615-2240634 | None:intergenic | 30.0% | |
| AACTTCTATGGTGACAATTA+TGG | - | chr5.3:2240280-2240299 | MS.gene40608:intron | 30.0% | |
| ACTTCTATGGTGACAATTAT+GGG | - | chr5.3:2240281-2240300 | MS.gene40608:intron | 30.0% | |
| ATCCAATAAGTTCATCACTT+TGG | + | chr5.3:2239586-2239605 | None:intergenic | 30.0% | |
| ATGTGTTATGTCTATGTTCA+AGG | - | chr5.3:2239865-2239884 | MS.gene40608:CDS | 30.0% | |
| ATTACCAATCATATTACTGG+AGG | + | chr5.3:2241093-2241112 | None:intergenic | 30.0% | |
| ATTGTGTGATTCAATTGCAT+TGG | - | chr5.3:2240578-2240597 | MS.gene40608:intron | 30.0% | |
| CAAGCAATACAACTAAGAAA+AGG | + | chr5.3:2240716-2240735 | None:intergenic | 30.0% | |
| CTGTGTTTATGTTGTAAGTT+TGG | - | chr5.3:2240481-2240500 | MS.gene40608:intron | 30.0% | |
| GACATAACACATACTTTGTT+TGG | + | chr5.3:2239857-2239876 | None:intergenic | 30.0% | |
| GGTTAAACTAAGAATTACAG+AGG | + | chr5.3:2240889-2240908 | None:intergenic | 30.0% | |
| GTTTGTGTGAATTGTAAGTT+TGG | - | chr5.3:2240615-2240634 | MS.gene40608:intron | 30.0% | |
| TAAGCTAATGGAACATTATC+AGG | + | chr5.3:2240063-2240082 | None:intergenic | 30.0% | |
| TTACCAATCATATTACTGGA+GGG | + | chr5.3:2241092-2241111 | None:intergenic | 30.0% | |
| TTAGAACATACACTAAAGTC+TGG | + | chr5.3:2240995-2241014 | None:intergenic | 30.0% | |
| TTAGTGTATGTTCTAACACT+GGG | - | chr5.3:2240999-2241018 | MS.gene40608:intron | 30.0% | |
| TTGAGTAAGTCATTACCTAA+TGG | + | chr5.3:2240818-2240837 | None:intergenic | 30.0% | |
| TTTAGTGTATGTTCTAACAC+TGG | - | chr5.3:2240998-2241017 | MS.gene40608:intron | 30.0% | |
| !! | ACAACTTGTTATGAAAAACC+AGG | + | chr5.3:2240547-2240566 | None:intergenic | 30.0% |
| !! | AGACTCAAATTTTGGTATCA+AGG | + | chr5.3:2239921-2239940 | None:intergenic | 30.0% |
| !! | GATCCTTTTATTAGTCTGAT+GGG | - | chr5.3:2240019-2240038 | MS.gene40608:intron | 30.0% |
| !! | TGATCCTTTTATTAGTCTGA+TGG | - | chr5.3:2240018-2240037 | MS.gene40608:intron | 30.0% |
| !!! | CAGGGCTTTTATTTTATCAA+TGG | - | chr5.3:2241275-2241294 | MS.gene40608:CDS | 30.0% |
| !!! | TTAGTTGGGTTTTAAGCTAA+TGG | + | chr5.3:2240075-2240094 | None:intergenic | 30.0% |
| ACTATCTCATTCGATAGAGT+AGG | - | chr5.3:2240862-2240881 | MS.gene40608:intron | 35.0% | |
| ACTTATGATTCACTTATGCG+TGG | - | chr5.3:2240157-2240176 | MS.gene40608:intron | 35.0% | |
| ATATCAGAATACTCTCTGGT+AGG | - | chr5.3:2240509-2240528 | MS.gene40608:intron | 35.0% | |
| CAGAATATCAGAATACTCTC+TGG | - | chr5.3:2240505-2240524 | MS.gene40608:intron | 35.0% | |
| CGTAGGAGTAATACGAATTT+CGG | - | chr5.3:2240687-2240706 | MS.gene40608:intron | 35.0% | |
| GTTCCCATCAGACTAATAAA+AGG | + | chr5.3:2240025-2240044 | None:intergenic | 35.0% | |
| TAAGTAGACAGAGAATACGT+AGG | - | chr5.3:2240670-2240689 | MS.gene40608:intron | 35.0% | |
| TATTCGTGCACTACGTAAAT+GGG | - | chr5.3:2241318-2241337 | MS.gene40608:CDS | 35.0% | |
| TGAAACCGGGAAGAAAAAAA+AGG | - | chr5.3:2240437-2240456 | MS.gene40608:intron | 35.0% | |
| TGTTCTTGCAAAAGAAAGTG+AGG | - | chr5.3:2239622-2239641 | MS.gene40608:CDS | 35.0% | |
| TTAAGCAGACAGTGTAAACT+AGG | + | chr5.3:2239992-2240011 | None:intergenic | 35.0% | |
| TTACTACTCTGTGGAAAGTA+TGG | - | chr5.3:2239737-2239756 | MS.gene40608:intron | 35.0% | |
| TTATTCGTGCACTACGTAAA+TGG | - | chr5.3:2241317-2241336 | MS.gene40608:CDS | 35.0% | |
| TTATTGGATTTGTAACAGCG+CGG | - | chr5.3:2239597-2239616 | MS.gene40608:CDS | 35.0% | |
| !! | GGTGTTATATCCTAGTCTTT+TGG | - | chr5.3:2240779-2240798 | MS.gene40608:intron | 35.0% |
| !! | TATCAGGTCCATTTAGTTCT+TGG | + | chr5.3:2240047-2240066 | None:intergenic | 35.0% |
| !! | TTGTAGATAGTGGATTTGCT+TGG | - | chr5.3:2240948-2240967 | MS.gene40608:intron | 35.0% |
| !!! | ATCTGCTTTTTTCGAAGATG+TGG | - | chr5.3:2239505-2239524 | MS.gene40608:CDS | 35.0% |
| !!! | CACTACCTTTTTTTTCTTCC+CGG | + | chr5.3:2240445-2240464 | None:intergenic | 35.0% |
| AAGCCCTCCAGTAATATGAT+TGG | - | chr5.3:2241086-2241105 | MS.gene40608:intron | 40.0% | |
| AAGTGTGTTAGAAAGCTGCA+GGG | - | chr5.3:2241257-2241276 | MS.gene40608:CDS | 40.0% | |
| ACAAACTGCTACCTATTCCA+AGG | + | chr5.3:2241046-2241065 | None:intergenic | 40.0% | |
| ACCAGCTTCTTCTTTGATAC+GGG | - | chr5.3:2241130-2241149 | MS.gene40608:intron | 40.0% | |
| AGTTCATCACTTTGGCCATT+CGG | + | chr5.3:2239578-2239597 | None:intergenic | 40.0% | |
| ATTCGTGCACTACGTAAATG+GGG | - | chr5.3:2241319-2241338 | MS.gene40608:CDS | 40.0% | |
| CACCAGCTTCTTCTTTGATA+CGG | - | chr5.3:2241129-2241148 | MS.gene40608:intron | 40.0% | |
| CACTAAAGTCTGGTCAGATT+TGG | + | chr5.3:2240985-2241004 | None:intergenic | 40.0% | |
| GATGGGAACCAAGAACTAAA+TGG | - | chr5.3:2240036-2240055 | MS.gene40608:intron | 40.0% | |
| GGCCAAAGTGATGAACTTAT+TGG | - | chr5.3:2239581-2239600 | MS.gene40608:CDS | 40.0% | |
| GGTAGTGCTGTGTAAAAAAC+TGG | - | chr5.3:2240458-2240477 | MS.gene40608:intron | 40.0% | |
| GTTCTGTTCTTACTACTCTG+TGG | - | chr5.3:2239728-2239747 | MS.gene40608:intron | 40.0% | |
| GTTTACACTGTCTGCTTAAG+TGG | - | chr5.3:2239993-2240012 | MS.gene40608:intron | 40.0% | |
| TCAAGGCAAGAGAAACTTGA+TGG | - | chr5.3:2239882-2239901 | MS.gene40608:CDS | 40.0% | |
| TCCAAATGGGAGGTTTAGTT+GGG | + | chr5.3:2240089-2240108 | None:intergenic | 40.0% | |
| ! | ACAGAACACGTTCTGTTTTC+AGG | + | chr5.3:2239715-2239734 | None:intergenic | 40.0% |
| ! | TTCTTGGAGGAGAAAGCATA+TGG | - | chr5.3:2240124-2240143 | MS.gene40608:intron | 40.0% |
| ACCAAGGTTCAAATTCTGGC+TGG | - | chr5.3:2240394-2240413 | MS.gene40608:intron | 45.0% | |
| ACCCAACTAAACCTCCCATT+TGG | - | chr5.3:2240085-2240104 | MS.gene40608:intron | 45.0% | |
| AGCTTCTTCTTTGATACGGG+AGG | - | chr5.3:2241133-2241152 | MS.gene40608:intron | 45.0% | |
| ATATGCTGTAGAACCAACCG+AGG | - | chr5.3:2240330-2240349 | MS.gene40608:intron | 45.0% | |
| ATTACCTAATGGTCAGCGCT+TGG | + | chr5.3:2240807-2240826 | None:intergenic | 45.0% | |
| CAAGTGTGTTAGAAAGCTGC+AGG | - | chr5.3:2241256-2241275 | MS.gene40608:CDS | 45.0% | |
| CTCCAAATGGGAGGTTTAGT+TGG | + | chr5.3:2240090-2240109 | None:intergenic | 45.0% | |
| GCGAACCAAGGTTCAAATTC+TGG | - | chr5.3:2240390-2240409 | MS.gene40608:intron | 45.0% | |
| GGTAGGAGTCATATAACTCC+TGG | - | chr5.3:2240526-2240545 | MS.gene40608:intron | 45.0% | |
| GTAGTGGTGTCTGAAAGTAG+TGG | - | chr5.3:2240243-2240262 | MS.gene40608:intron | 45.0% | |
| GTTGATCTTAGTCGACCGAA+TGG | - | chr5.3:2239560-2239579 | MS.gene40608:CDS | 45.0% | |
| TCCCGGTTTCACACAAAAGT+GGG | + | chr5.3:2240428-2240447 | None:intergenic | 45.0% | |
| TCCCGTATCAAAGAAGAAGC+TGG | + | chr5.3:2241134-2241153 | None:intergenic | 45.0% | |
| TCGAAGATGTGGTGAACAGA+CGG | - | chr5.3:2239516-2239535 | MS.gene40608:CDS | 45.0% | |
| TGTTCTAACACTGGGAGTAG+TGG | - | chr5.3:2241007-2241026 | MS.gene40608:intron | 45.0% | |
| TTCCCGGTTTCACACAAAAG+TGG | + | chr5.3:2240429-2240448 | None:intergenic | 45.0% | |
| TTCGTGCACTACGTAAATGG+GGG | - | chr5.3:2241320-2241339 | MS.gene40608:CDS | 45.0% | |
| ! | AACCTTGGTTCGCTATGTTG+TGG | + | chr5.3:2240383-2240402 | None:intergenic | 45.0% |
| ! | ACCTTGGTTCGCTATGTTGT+GGG | + | chr5.3:2240382-2240401 | None:intergenic | 45.0% |
| ! | CAAAGAAGAAGCTGGTGATG+AGG | + | chr5.3:2241126-2241145 | None:intergenic | 45.0% |
| ! | CCAAGGTTCAAATTCTGGCT+GGG | - | chr5.3:2240395-2240414 | MS.gene40608:intron | 45.0% |
| ! | GGAGTAGTGGAAGCATATAG+GGG | - | chr5.3:2241020-2241039 | MS.gene40608:intron | 45.0% |
| ! | GGGAGTAGTGGAAGCATATA+GGG | - | chr5.3:2241019-2241038 | MS.gene40608:intron | 45.0% |
| ! | TGGGAGTAGTGGAAGCATAT+AGG | - | chr5.3:2241018-2241037 | MS.gene40608:intron | 45.0% |
| ACAGACGGGATATTGTGTCG+TGG | - | chr5.3:2239531-2239550 | MS.gene40608:CDS | 50.0% | |
| AGACGGGATATTGTGTCGTG+GGG | - | chr5.3:2239533-2239552 | MS.gene40608:CDS | 50.0% | |
| CAGACGGGATATTGTGTCGT+GGG | - | chr5.3:2239532-2239551 | MS.gene40608:CDS | 50.0% | |
| CCCAGCCAGAATTTGAACCT+TGG | + | chr5.3:2240398-2240417 | None:intergenic | 50.0% | |
| CGAAGATGTGGTGAACAGAC+GGG | - | chr5.3:2239517-2239536 | MS.gene40608:CDS | 50.0% | |
| CTGTAGAACCAACCGAGGTT+GGG | - | chr5.3:2240335-2240354 | MS.gene40608:intron | 50.0% | |
| GCATATAGGGGCCTTGGAAT+AGG | - | chr5.3:2241032-2241051 | MS.gene40608:intron | 50.0% | |
| TCACGTGCAAGTAAACCGCT+CGG | + | chr5.3:2241190-2241209 | None:intergenic | 50.0% | |
| TCCCACAACATAGCGAACCA+AGG | - | chr5.3:2240378-2240397 | MS.gene40608:intron | 50.0% | |
| TGCACTACGTAAATGGGGGA+CGG | - | chr5.3:2241324-2241343 | MS.gene40608:CDS | 50.0% | |
| ! | GTTCAAATTCTGGCTGGGAG+TGG | - | chr5.3:2240400-2240419 | MS.gene40608:intron | 50.0% |
| !! | CGCCCACTTTTGTGTGAAAC+CGG | - | chr5.3:2240423-2240442 | MS.gene40608:intron | 50.0% |
| !! | GCCCACTTTTGTGTGAAACC+GGG | - | chr5.3:2240424-2240443 | MS.gene40608:intron | 50.0% |
| AAGCATTCCAACGTGCCGAG+CGG | - | chr5.3:2241172-2241191 | MS.gene40608:intron | 55.0% | |
| AAGTAAACCGCTCGGCACGT+TGG | + | chr5.3:2241182-2241201 | None:intergenic | 55.0% | |
| GCGCTTGGCACCAAAAGACT+AGG | + | chr5.3:2240792-2240811 | None:intergenic | 55.0% | |
| GCTGTAGAACCAACCGAGGT+TGG | - | chr5.3:2240334-2240353 | MS.gene40608:intron | 55.0% | |
| ! | GTGGAAGCATATAGGGGCCT+TGG | - | chr5.3:2241026-2241045 | MS.gene40608:intron | 55.0% |
| CCAACCGAGGTTGGGTCTAG+CGG | - | chr5.3:2240343-2240362 | MS.gene40608:intron | 60.0% | |
| CGAGGTTGGGTCTAGCGGAA+CGG | - | chr5.3:2240348-2240367 | MS.gene40608:intron | 60.0% | |
| CGTTCCGCTAGACCCAACCT+CGG | + | chr5.3:2240350-2240369 | None:intergenic | 60.0% | |
| GAGGTTGGGTCTAGCGGAAC+GGG | - | chr5.3:2240349-2240368 | MS.gene40608:intron | 60.0% | |
| !! | GGTGCCAAGCGCTGACCATT+AGG | - | chr5.3:2240800-2240819 | MS.gene40608:intron | 60.0% |
| CCGCTAGACCCAACCTCGGT+TGG | + | chr5.3:2240346-2240365 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 2239499 | 2241363 | 2239499 | ID=MS.gene40608 |
| chr5.3 | mRNA | 2239499 | 2241363 | 2239499 | ID=MS.gene40608.t1;Parent=MS.gene40608 |
| chr5.3 | exon | 2241219 | 2241363 | 2241219 | ID=MS.gene40608.t1.exon1;Parent=MS.gene40608.t1 |
| chr5.3 | CDS | 2241219 | 2241363 | 2241219 | ID=cds.MS.gene40608.t1;Parent=MS.gene40608.t1 |
| chr5.3 | exon | 2239809 | 2239908 | 2239809 | ID=MS.gene40608.t1.exon2;Parent=MS.gene40608.t1 |
| chr5.3 | CDS | 2239809 | 2239908 | 2239809 | ID=cds.MS.gene40608.t1;Parent=MS.gene40608.t1 |
| chr5.3 | exon | 2239499 | 2239727 | 2239499 | ID=MS.gene40608.t1.exon3;Parent=MS.gene40608.t1 |
| chr5.3 | CDS | 2239499 | 2239727 | 2239499 | ID=cds.MS.gene40608.t1;Parent=MS.gene40608.t1 |
| Gene Sequence |
| Protein sequence |
