Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49065.t1 | XP_013469695.1 | 95.6 | 206 | 9 | 0 | 1 | 206 | 1 | 206 | 1.90E-103 | 385.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49065.t1 | P42404 | 35.3 | 153 | 94 | 2 | 54 | 206 | 38 | 185 | 9.6e-19 | 95.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49065.t1 | A0A072VQM0 | 95.6 | 206 | 9 | 0 | 1 | 206 | 1 | 206 | 1.4e-103 | 385.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene49065 | 0.866392 | 2.95E-65 | -1.69E-46 |
| MS.gene049222 | MS.gene49065 | 0.817318 | 3.51E-52 | -1.69E-46 |
| MS.gene049285 | MS.gene49065 | 0.821072 | 4.90E-53 | -1.69E-46 |
| MS.gene049320 | MS.gene49065 | 0.814274 | 1.67E-51 | -1.69E-46 |
| MS.gene049627 | MS.gene49065 | 0.803713 | 3.06E-49 | -1.69E-46 |
| MS.gene049633 | MS.gene49065 | 0.824492 | 7.84E-54 | -1.69E-46 |
| MS.gene05010 | MS.gene49065 | 0.818581 | 1.82E-52 | -1.69E-46 |
| MS.gene050170 | MS.gene49065 | 0.831033 | 2.10E-55 | -1.69E-46 |
| MS.gene050323 | MS.gene49065 | 0.809362 | 1.96E-50 | -1.69E-46 |
| MS.gene050504 | MS.gene49065 | 0.859915 | 2.97E-63 | -1.69E-46 |
| MS.gene050518 | MS.gene49065 | 0.819741 | 9.90E-53 | -1.69E-46 |
| MS.gene050577 | MS.gene49065 | 0.879333 | 1.36E-69 | -1.69E-46 |
| MS.gene050612 | MS.gene49065 | 0.825089 | 5.67E-54 | -1.69E-46 |
| MS.gene050699 | MS.gene49065 | 0.849984 | 2.28E-60 | -1.69E-46 |
| MS.gene050747 | MS.gene49065 | 0.811009 | 8.67E-51 | -1.69E-46 |
| MS.gene05080 | MS.gene49065 | 0.800507 | 1.40E-48 | -1.69E-46 |
| MS.gene050868 | MS.gene49065 | 0.811116 | 8.22E-51 | -1.69E-46 |
| MS.gene050871 | MS.gene49065 | 0.810004 | 1.43E-50 | -1.69E-46 |
| MS.gene050904 | MS.gene49065 | 0.813367 | 2.65E-51 | -1.69E-46 |
| MS.gene050950 | MS.gene49065 | 0.811323 | 7.41E-51 | -1.69E-46 |
| MS.gene050986 | MS.gene49065 | 0.848164 | 7.30E-60 | -1.69E-46 |
| MS.gene051317 | MS.gene49065 | 0.832486 | 9.20E-56 | -1.69E-46 |
| MS.gene051551 | MS.gene49065 | 0.806133 | 9.54E-50 | -1.69E-46 |
| MS.gene051761 | MS.gene49065 | -0.801217 | 9.99E-49 | -1.69E-46 |
| MS.gene051838 | MS.gene49065 | 0.807362 | 5.25E-50 | -1.69E-46 |
| MS.gene051946 | MS.gene49065 | -0.804422 | 2.18E-49 | -1.69E-46 |
| MS.gene052015 | MS.gene49065 | -0.823249 | 1.53E-53 | -1.69E-46 |
| MS.gene052164 | MS.gene49065 | 0.833787 | 4.36E-56 | -1.69E-46 |
| MS.gene052482 | MS.gene49065 | 0.836416 | 9.48E-57 | -1.69E-46 |
| MS.gene052486 | MS.gene49065 | 0.851041 | 1.15E-60 | -1.69E-46 |
| MS.gene052494 | MS.gene49065 | -0.803422 | 3.51E-49 | -1.69E-46 |
| MS.gene052503 | MS.gene49065 | 0.84414 | 9.09E-59 | -1.69E-46 |
| MS.gene052823 | MS.gene49065 | 0.844518 | 7.20E-59 | -1.69E-46 |
| MS.gene052825 | MS.gene49065 | 0.85105 | 1.14E-60 | -1.69E-46 |
| MS.gene052966 | MS.gene49065 | 0.807233 | 5.59E-50 | -1.69E-46 |
| MS.gene053097 | MS.gene49065 | -0.80431 | 2.30E-49 | -1.69E-46 |
| MS.gene053203 | MS.gene49065 | 0.859091 | 5.26E-63 | -1.69E-46 |
| MS.gene053213 | MS.gene49065 | 0.803272 | 3.77E-49 | -1.69E-46 |
| MS.gene053286 | MS.gene49065 | 0.812557 | 3.99E-51 | -1.69E-46 |
| MS.gene053436 | MS.gene49065 | 0.806383 | 8.45E-50 | -1.69E-46 |
| MS.gene053480 | MS.gene49065 | 0.847215 | 1.33E-59 | -1.69E-46 |
| MS.gene053549 | MS.gene49065 | -0.811846 | 5.71E-51 | -1.69E-46 |
| MS.gene054595 | MS.gene49065 | 0.813662 | 2.29E-51 | -1.69E-46 |
| MS.gene054600 | MS.gene49065 | 0.818028 | 2.43E-52 | -1.69E-46 |
| MS.gene05470 | MS.gene49065 | 0.876108 | 1.81E-68 | -1.69E-46 |
| MS.gene054927 | MS.gene49065 | 0.803001 | 4.29E-49 | -1.69E-46 |
| MS.gene054954 | MS.gene49065 | 0.831248 | 1.86E-55 | -1.69E-46 |
| MS.gene055362 | MS.gene49065 | 0.844682 | 6.50E-59 | -1.69E-46 |
| MS.gene055502 | MS.gene49065 | 0.841089 | 5.87E-58 | -1.69E-46 |
| MS.gene055577 | MS.gene49065 | 0.83526 | 1.86E-56 | -1.69E-46 |
| MS.gene055748 | MS.gene49065 | 0.811754 | 5.98E-51 | -1.69E-46 |
| MS.gene055751 | MS.gene49065 | 0.801686 | 8.01E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene49065 | 0.853945 | 1.71E-61 | -1.69E-46 |
| MS.gene056040 | MS.gene49065 | 0.829343 | 5.43E-55 | -1.69E-46 |
| MS.gene056504 | MS.gene49065 | 0.843085 | 1.74E-58 | -1.69E-46 |
| MS.gene056510 | MS.gene49065 | 0.85343 | 2.40E-61 | -1.69E-46 |
| MS.gene056550 | MS.gene49065 | -0.805255 | 1.46E-49 | -1.69E-46 |
| MS.gene056610 | MS.gene49065 | 0.818479 | 1.92E-52 | -1.69E-46 |
| MS.gene056657 | MS.gene49065 | 0.801472 | 8.86E-49 | -1.69E-46 |
| MS.gene056692 | MS.gene49065 | 0.806697 | 7.25E-50 | -1.69E-46 |
| MS.gene057658 | MS.gene49065 | 0.832377 | 9.79E-56 | -1.69E-46 |
| MS.gene057831 | MS.gene49065 | 0.834116 | 3.61E-56 | -1.69E-46 |
| MS.gene058334 | MS.gene49065 | -0.801607 | 8.31E-49 | -1.69E-46 |
| MS.gene05837 | MS.gene49065 | 0.829077 | 6.30E-55 | -1.69E-46 |
| MS.gene058419 | MS.gene49065 | 0.822723 | 2.03E-53 | -1.69E-46 |
| MS.gene058544 | MS.gene49065 | 0.856903 | 2.35E-62 | -1.69E-46 |
| MS.gene058838 | MS.gene49065 | 0.81786 | 2.65E-52 | -1.69E-46 |
| MS.gene059022 | MS.gene49065 | 0.84831 | 6.65E-60 | -1.69E-46 |
| MS.gene059023 | MS.gene49065 | 0.855316 | 6.85E-62 | -1.69E-46 |
| MS.gene059103 | MS.gene49065 | -0.84639 | 2.24E-59 | -1.69E-46 |
| MS.gene05914 | MS.gene49065 | 0.81336 | 2.66E-51 | -1.69E-46 |
| MS.gene059303 | MS.gene49065 | 0.819126 | 1.37E-52 | -1.69E-46 |
| MS.gene059480 | MS.gene49065 | -0.85177 | 7.15E-61 | -1.69E-46 |
| MS.gene059677 | MS.gene49065 | 0.832314 | 1.01E-55 | -1.69E-46 |
| MS.gene059718 | MS.gene49065 | 0.82495 | 6.11E-54 | -1.69E-46 |
| MS.gene059756 | MS.gene49065 | 0.833952 | 3.97E-56 | -1.69E-46 |
| MS.gene059837 | MS.gene49065 | 0.826519 | 2.59E-54 | -1.69E-46 |
| MS.gene059865 | MS.gene49065 | 0.818471 | 1.93E-52 | -1.69E-46 |
| MS.gene06000 | MS.gene49065 | 0.819861 | 9.30E-53 | -1.69E-46 |
| MS.gene060762 | MS.gene49065 | 0.822559 | 2.22E-53 | -1.69E-46 |
| MS.gene06077 | MS.gene49065 | 0.883491 | 4.29E-71 | -1.69E-46 |
| MS.gene06092 | MS.gene49065 | 0.827319 | 1.67E-54 | -1.69E-46 |
| MS.gene060982 | MS.gene49065 | 0.836945 | 6.95E-57 | -1.69E-46 |
| MS.gene061150 | MS.gene49065 | 0.816509 | 5.33E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49065.t1 | MTR_1g100753 | 95.631 | 206 | 9 | 0 | 1 | 206 | 1 | 206 | 1.74e-136 | 380 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49065.t1 | AT5G52190 | 72.637 | 201 | 50 | 2 | 11 | 206 | 8 | 208 | 1.26e-106 | 305 |
Find 69 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGAAAATATGGAGGATATT+TGG | 0.228871 | 1.3:-69689447 | None:intergenic |
| GAGATGGTTGTGTATAAGTT+AGG | 0.266389 | 1.3:+69689925 | MS.gene49065:CDS |
| TTCTATTTCTCAAGTAGATA+TGG | 0.316510 | 1.3:+69689399 | MS.gene49065:CDS |
| TGACGAGATCGAACGGCTTC+AGG | 0.341605 | 1.3:-69689967 | None:intergenic |
| CTGACTGCTCAACCAGAGAT+AGG | 0.342066 | 1.3:+69689763 | MS.gene49065:CDS |
| TGGTCATGTCGAAGACTAGA+TGG | 0.365756 | 1.3:-69689627 | None:intergenic |
| AGAGGAGATGGTGGAGAGTT+CGG | 0.366138 | 1.3:-69689512 | None:intergenic |
| AGATGGTTGTGTATAAGTTA+GGG | 0.370004 | 1.3:+69689926 | MS.gene49065:CDS |
| GATGGGCTGAGAGGCCTAGA+TGG | 0.374597 | 1.3:-69689609 | None:intergenic |
| AGTAAGAGGTCGAGAGGAGG+TGG | 0.378790 | 1.3:-69689487 | None:intergenic |
| ATCAAGACCATTGCTTCCTA+TGG | 0.384419 | 1.3:+69689867 | MS.gene49065:CDS |
| TCGATCTCGTCATACTAATC+TGG | 0.390912 | 1.3:+69689978 | MS.gene49065:CDS |
| TTACGTGCCTGCAAAGACTA+TGG | 0.402934 | 1.3:+69689816 | MS.gene49065:CDS |
| AGGTCGAGAGGAGGTGGGTG+TGG | 0.409570 | 1.3:-69689481 | None:intergenic |
| AGGAGATCATTGGTGGTGAT+TGG | 0.410627 | 1.3:-69689655 | None:intergenic |
| TCAAGTAGATATGGCTTCAA+TGG | 0.418159 | 1.3:+69689408 | MS.gene49065:CDS |
| CTCTACGGTGTTGGCCGCGA+AGG | 0.422166 | 1.3:+69689553 | MS.gene49065:CDS |
| TCATTCGCCATAGTCTTTGC+AGG | 0.428098 | 1.3:-69689823 | None:intergenic |
| CTCATCGCCTCAGCCGGTCC+AGG | 0.437578 | 1.3:+69689676 | MS.gene49065:CDS |
| TCGACAGTGGAGAAGCCGCC+TGG | 0.438096 | 1.3:-69689694 | None:intergenic |
| GGAGGTGGGTGTGGATGAGT+GGG | 0.445781 | 1.3:-69689472 | None:intergenic |
| AGGAGGTGGGTGTGGATGAG+TGG | 0.447308 | 1.3:-69689473 | None:intergenic |
| ATGAGTGGGAGTTGAAAATA+TGG | 0.453698 | 1.3:-69689458 | None:intergenic |
| TTCACACAGGACCCTATCTC+TGG | 0.470565 | 1.3:-69689775 | None:intergenic |
| ATGGGCTAAGCGCATGCATA+AGG | 0.471381 | 1.3:-69689590 | None:intergenic |
| ACTGTTTGTGTTGTTTGAGA+TGG | 0.478342 | 1.3:+69689909 | MS.gene49065:CDS |
| AGTGGAGAAGCCGCCTGGAC+CGG | 0.488941 | 1.3:-69689689 | None:intergenic |
| AAAGACTATGGCGAATGATA+AGG | 0.495854 | 1.3:+69689828 | MS.gene49065:CDS |
| GATCTCCTCATCGCCTCAGC+CGG | 0.497810 | 1.3:+69689670 | MS.gene49065:CDS |
| AGATCATTGGTGGTGATTGG+AGG | 0.498257 | 1.3:-69689652 | None:intergenic |
| ATGGCGAATGATAAGGATGA+AGG | 0.506270 | 1.3:+69689835 | MS.gene49065:CDS |
| GAAGCCGCCTGGACCGGCTG+AGG | 0.507477 | 1.3:-69689683 | None:intergenic |
| TCAAGACCATTGCTTCCTAT+GGG | 0.513407 | 1.3:+69689868 | MS.gene49065:CDS |
| CACTGTCGATGCTATATGCT+CGG | 0.515036 | 1.3:+69689708 | MS.gene49065:CDS |
| CTTTGAGCATTAAGCCTTCG+CGG | 0.520257 | 1.3:-69689567 | None:intergenic |
| AAGAAGCACTCTTCCACCGT+TGG | 0.538774 | 1.3:-69689740 | None:intergenic |
| TCCACCATCTCCTCTCAAAA+CGG | 0.554570 | 1.3:+69689520 | MS.gene49065:CDS |
| TGAGGCGATGAGGAGATCAT+TGG | 0.554801 | 1.3:-69689665 | None:intergenic |
| TGACTGCTCAACCAGAGATA+GGG | 0.560185 | 1.3:+69689764 | MS.gene49065:CDS |
| GTAAGAGGTCGAGAGGAGGT+GGG | 0.564585 | 1.3:-69689486 | None:intergenic |
| TGGCGAATGATAAGGATGAA+GGG | 0.568337 | 1.3:+69689836 | MS.gene49065:CDS |
| CTGTGTGAAGCATGCTAGTG+TGG | 0.570857 | 1.3:+69689789 | MS.gene49065:CDS |
| TGGAGAGTTCGGTTAGTAAG+AGG | 0.579288 | 1.3:-69689501 | None:intergenic |
| ATGGGCTGAGAGGCCTAGAT+GGG | 0.584829 | 1.3:-69689608 | None:intergenic |
| AGTGGGAGTTGAAAATATGG+AGG | 0.589032 | 1.3:-69689455 | None:intergenic |
| GGCGAATGATAAGGATGAAG+GGG | 0.593461 | 1.3:+69689837 | MS.gene49065:CDS |
| GGTCATGTCGAAGACTAGAT+GGG | 0.596297 | 1.3:-69689626 | None:intergenic |
| CCTATGGGGAGTGTGTATGA+AGG | 0.597763 | 1.3:+69689883 | MS.gene49065:CDS |
| GATGGTTGTGTATAAGTTAG+GGG | 0.603756 | 1.3:+69689927 | MS.gene49065:CDS |
| TGCTCGGTAGCACGATCCAA+CGG | 0.606651 | 1.3:+69689724 | MS.gene49065:CDS |
| CCTTCATACACACTCCCCAT+AGG | 0.612186 | 1.3:-69689883 | None:intergenic |
| ATTAGTATGACGAGATCGAA+CGG | 0.612587 | 1.3:-69689974 | None:intergenic |
| CTGGACCGGCTGAGGCGATG+AGG | 0.614008 | 1.3:-69689675 | None:intergenic |
| ACACTCCCCATAGGAAGCAA+TGG | 0.614848 | 1.3:-69689874 | None:intergenic |
| TCGGTTAGTAAGAGGTCGAG+AGG | 0.619034 | 1.3:-69689493 | None:intergenic |
| GGCGATGAGGAGATCATTGG+TGG | 0.627157 | 1.3:-69689662 | None:intergenic |
| ATTGGTGGTGATTGGAGGAG+TGG | 0.628718 | 1.3:-69689647 | None:intergenic |
| TGTGAAGCATGCTAGTGTGG+TGG | 0.631703 | 1.3:+69689792 | MS.gene49065:CDS |
| TGCATGCGCTTAGCCCATCT+AGG | 0.636017 | 1.3:+69689595 | MS.gene49065:CDS |
| CACACTAGCATGCTTCACAC+AGG | 0.655929 | 1.3:-69689788 | None:intergenic |
| TATTTGGTTGCAGATTTGTG+TGG | 0.656311 | 1.3:-69689431 | None:intergenic |
| GTTAGTAAGAGGTCGAGAGG+AGG | 0.664837 | 1.3:-69689490 | None:intergenic |
| CGAAGACTAGATGGGCTGAG+AGG | 0.670570 | 1.3:-69689618 | None:intergenic |
| CTTCGCGGCCAACACCGTAG+AGG | 0.673681 | 1.3:-69689552 | None:intergenic |
| CGAGCATATAGCATCGACAG+TGG | 0.676439 | 1.3:-69689707 | None:intergenic |
| CAAGACCATTGCTTCCTATG+GGG | 0.677128 | 1.3:+69689869 | MS.gene49065:CDS |
| CAACACCGTAGAGGAAAACG+CGG | 0.688293 | 1.3:-69689543 | None:intergenic |
| ATCGCCTCAGCCGGTCCAGG+CGG | 0.693754 | 1.3:+69689679 | MS.gene49065:CDS |
| TCGGTAGCACGATCCAACGG+TGG | 0.767760 | 1.3:+69689727 | MS.gene49065:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TTGAAAATATGGAGGATATT+TGG | - | chr1.3:69689450-69689469 | None:intergenic | 25.0% |
| !! | TTCTATTTCTCAAGTAGATA+TGG | + | chr1.3:69689399-69689418 | MS.gene49065:CDS | 25.0% |
| AGATGGTTGTGTATAAGTTA+GGG | + | chr1.3:69689926-69689945 | MS.gene49065:CDS | 30.0% | |
| ! | TATAAGTTAGGGGAGATTTT+AGG | + | chr1.3:69689937-69689956 | MS.gene49065:CDS | 30.0% |
| AAAGACTATGGCGAATGATA+AGG | + | chr1.3:69689828-69689847 | MS.gene49065:CDS | 35.0% | |
| ATGAGTGGGAGTTGAAAATA+TGG | - | chr1.3:69689461-69689480 | None:intergenic | 35.0% | |
| ATTAGTATGACGAGATCGAA+CGG | - | chr1.3:69689977-69689996 | None:intergenic | 35.0% | |
| GAGATGGTTGTGTATAAGTT+AGG | + | chr1.3:69689925-69689944 | MS.gene49065:CDS | 35.0% | |
| GATGGTTGTGTATAAGTTAG+GGG | + | chr1.3:69689927-69689946 | MS.gene49065:CDS | 35.0% | |
| TATTTGGTTGCAGATTTGTG+TGG | - | chr1.3:69689434-69689453 | None:intergenic | 35.0% | |
| TCAAGTAGATATGGCTTCAA+TGG | + | chr1.3:69689408-69689427 | MS.gene49065:CDS | 35.0% | |
| !! | ACTGTTTGTGTTGTTTGAGA+TGG | + | chr1.3:69689909-69689928 | MS.gene49065:CDS | 35.0% |
| AGTGGGAGTTGAAAATATGG+AGG | - | chr1.3:69689458-69689477 | None:intergenic | 40.0% | |
| ATCAAGACCATTGCTTCCTA+TGG | + | chr1.3:69689867-69689886 | MS.gene49065:CDS | 40.0% | |
| ATGGCGAATGATAAGGATGA+AGG | + | chr1.3:69689835-69689854 | MS.gene49065:CDS | 40.0% | |
| TCAAGACCATTGCTTCCTAT+GGG | + | chr1.3:69689868-69689887 | MS.gene49065:CDS | 40.0% | |
| TCGATCTCGTCATACTAATC+TGG | + | chr1.3:69689978-69689997 | MS.gene49065:CDS | 40.0% | |
| TGGCGAATGATAAGGATGAA+GGG | + | chr1.3:69689836-69689855 | MS.gene49065:CDS | 40.0% | |
| CAAGACCATTGCTTCCTATG+GGG | + | chr1.3:69689869-69689888 | MS.gene49065:CDS | 45.0% | |
| CACTGTCGATGCTATATGCT+CGG | + | chr1.3:69689708-69689727 | MS.gene49065:CDS | 45.0% | |
| CTTTGAGCATTAAGCCTTCG+CGG | - | chr1.3:69689570-69689589 | None:intergenic | 45.0% | |
| GGCGAATGATAAGGATGAAG+GGG | + | chr1.3:69689837-69689856 | MS.gene49065:CDS | 45.0% | |
| GGTCATGTCGAAGACTAGAT+GGG | - | chr1.3:69689629-69689648 | None:intergenic | 45.0% | |
| TCATTCGCCATAGTCTTTGC+AGG | - | chr1.3:69689826-69689845 | None:intergenic | 45.0% | |
| TCCACCATCTCCTCTCAAAA+CGG | + | chr1.3:69689520-69689539 | MS.gene49065:CDS | 45.0% | |
| TGACTGCTCAACCAGAGATA+GGG | + | chr1.3:69689764-69689783 | MS.gene49065:CDS | 45.0% | |
| TGGAGAGTTCGGTTAGTAAG+AGG | - | chr1.3:69689504-69689523 | None:intergenic | 45.0% | |
| TGGTCATGTCGAAGACTAGA+TGG | - | chr1.3:69689630-69689649 | None:intergenic | 45.0% | |
| TTACGTGCCTGCAAAGACTA+TGG | + | chr1.3:69689816-69689835 | MS.gene49065:CDS | 45.0% | |
| !! | AGATCATTGGTGGTGATTGG+AGG | - | chr1.3:69689655-69689674 | None:intergenic | 45.0% |
| !! | AGGAGATCATTGGTGGTGAT+TGG | - | chr1.3:69689658-69689677 | None:intergenic | 45.0% |
| ACACTCCCCATAGGAAGCAA+TGG | - | chr1.3:69689877-69689896 | None:intergenic | 50.0% | |
| CAACACCGTAGAGGAAAACG+CGG | - | chr1.3:69689546-69689565 | None:intergenic | 50.0% | |
| CACACTAGCATGCTTCACAC+AGG | - | chr1.3:69689791-69689810 | None:intergenic | 50.0% | |
| CCTTCATACACACTCCCCAT+AGG | - | chr1.3:69689886-69689905 | None:intergenic | 50.0% | |
| CTGACTGCTCAACCAGAGAT+AGG | + | chr1.3:69689763-69689782 | MS.gene49065:CDS | 50.0% | |
| CTGTGTGAAGCATGCTAGTG+TGG | + | chr1.3:69689789-69689808 | MS.gene49065:CDS | 50.0% | |
| GTTAGTAAGAGGTCGAGAGG+AGG | - | chr1.3:69689493-69689512 | None:intergenic | 50.0% | |
| TCGGTTAGTAAGAGGTCGAG+AGG | - | chr1.3:69689496-69689515 | None:intergenic | 50.0% | |
| TGAGGCGATGAGGAGATCAT+TGG | - | chr1.3:69689668-69689687 | None:intergenic | 50.0% | |
| TGTGAAGCATGCTAGTGTGG+TGG | + | chr1.3:69689792-69689811 | MS.gene49065:CDS | 50.0% | |
| TTCACACAGGACCCTATCTC+TGG | - | chr1.3:69689778-69689797 | None:intergenic | 50.0% | |
| ! | ATGGGCTAAGCGCATGCATA+AGG | - | chr1.3:69689593-69689612 | None:intergenic | 50.0% |
| ! | CCTATGGGGAGTGTGTATGA+AGG | + | chr1.3:69689883-69689902 | MS.gene49065:CDS | 50.0% |
| !! | AAGAAGCACTCTTCCACCGT+TGG | - | chr1.3:69689743-69689762 | None:intergenic | 50.0% |
| !! | AGAGGAGATGGTGGAGAGTT+CGG | - | chr1.3:69689515-69689534 | None:intergenic | 50.0% |
| !! | ATTGGTGGTGATTGGAGGAG+TGG | - | chr1.3:69689650-69689669 | None:intergenic | 50.0% |
| !! | CGAGCATATAGCATCGACAG+TGG | - | chr1.3:69689710-69689729 | None:intergenic | 50.0% |
| AGTAAGAGGTCGAGAGGAGG+TGG | - | chr1.3:69689490-69689509 | None:intergenic | 55.0% | |
| GGCGATGAGGAGATCATTGG+TGG | - | chr1.3:69689665-69689684 | None:intergenic | 55.0% | |
| GTAAGAGGTCGAGAGGAGGT+GGG | - | chr1.3:69689489-69689508 | None:intergenic | 55.0% | |
| TGACGAGATCGAACGGCTTC+AGG | - | chr1.3:69689970-69689989 | None:intergenic | 55.0% | |
| TGCATGCGCTTAGCCCATCT+AGG | + | chr1.3:69689595-69689614 | MS.gene49065:CDS | 55.0% | |
| TGCTCGGTAGCACGATCCAA+CGG | + | chr1.3:69689724-69689743 | MS.gene49065:CDS | 55.0% | |
| ! | AACGGCCGCGTTTTCCTCTA+CGG | + | chr1.3:69689538-69689557 | MS.gene49065:CDS | 55.0% |
| ! | ATGGGCTGAGAGGCCTAGAT+GGG | - | chr1.3:69689611-69689630 | None:intergenic | 55.0% |
| ! | CGCGTTTTCCTCTACGGTGT+TGG | + | chr1.3:69689544-69689563 | MS.gene49065:CDS | 55.0% |
| !! | CGAAGACTAGATGGGCTGAG+AGG | - | chr1.3:69689621-69689640 | None:intergenic | 55.0% |
| !! | GAAAACGCGGCCGTTTTGAG+AGG | - | chr1.3:69689533-69689552 | None:intergenic | 55.0% |
| !!! | GCCGTTTTGAGAGGAGATGG+TGG | - | chr1.3:69689524-69689543 | None:intergenic | 55.0% |
| AGGAGGTGGGTGTGGATGAG+TGG | - | chr1.3:69689476-69689495 | None:intergenic | 60.0% | |
| GATCTCCTCATCGCCTCAGC+CGG | + | chr1.3:69689670-69689689 | MS.gene49065:CDS | 60.0% | |
| GGAGGTGGGTGTGGATGAGT+GGG | - | chr1.3:69689475-69689494 | None:intergenic | 60.0% | |
| TCGGTAGCACGATCCAACGG+TGG | + | chr1.3:69689727-69689746 | MS.gene49065:CDS | 60.0% | |
| !! | GATGGGCTGAGAGGCCTAGA+TGG | - | chr1.3:69689612-69689631 | None:intergenic | 60.0% |
| !!! | GCGGCCGTTTTGAGAGGAGA+TGG | - | chr1.3:69689527-69689546 | None:intergenic | 60.0% |
| AGGTCGAGAGGAGGTGGGTG+TGG | - | chr1.3:69689484-69689503 | None:intergenic | 65.0% | |
| AGTGGAGAAGCCGCCTGGAC+CGG | - | chr1.3:69689692-69689711 | None:intergenic | 65.0% | |
| CTTCGCGGCCAACACCGTAG+AGG | - | chr1.3:69689555-69689574 | None:intergenic | 65.0% | |
| TCGACAGTGGAGAAGCCGCC+TGG | - | chr1.3:69689697-69689716 | None:intergenic | 65.0% | |
| !! | CTCTACGGTGTTGGCCGCGA+AGG | + | chr1.3:69689553-69689572 | MS.gene49065:CDS | 65.0% |
| ATCGCCTCAGCCGGTCCAGG+CGG | + | chr1.3:69689679-69689698 | MS.gene49065:CDS | 70.0% | |
| CTCATCGCCTCAGCCGGTCC+AGG | + | chr1.3:69689676-69689695 | MS.gene49065:CDS | 70.0% | |
| CTGGACCGGCTGAGGCGATG+AGG | - | chr1.3:69689678-69689697 | None:intergenic | 70.0% | |
| GAAGCCGCCTGGACCGGCTG+AGG | - | chr1.3:69689686-69689705 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 69689385 | 69690005 | 69689385 | ID=MS.gene49065 |
| chr1.3 | mRNA | 69689385 | 69690005 | 69689385 | ID=MS.gene49065.t1;Parent=MS.gene49065 |
| chr1.3 | exon | 69689385 | 69690005 | 69689385 | ID=MS.gene49065.t1.exon1;Parent=MS.gene49065.t1 |
| chr1.3 | CDS | 69689385 | 69690005 | 69689385 | ID=cds.MS.gene49065.t1;Parent=MS.gene49065.t1 |
| Gene Sequence |
| Protein sequence |
