Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58945.t1 | XP_003609582.1 | 92.6 | 189 | 9 | 2 | 1 | 186 | 1 | 187 | 1.30E-87 | 332.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58945.t1 | C6SVQ5 | 71.2 | 198 | 40 | 4 | 1 | 186 | 1 | 193 | 9.1e-69 | 261.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58945.t1 | G7JJ29 | 92.6 | 189 | 9 | 2 | 1 | 186 | 1 | 187 | 9.6e-88 | 332.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049181 | MS.gene58945 | 0.831046 | 2.08E-55 | -1.69E-46 |
| MS.gene049259 | MS.gene58945 | 0.836015 | 1.20E-56 | -1.69E-46 |
| MS.gene049281 | MS.gene58945 | 0.863176 | 3.00E-64 | -1.69E-46 |
| MS.gene049285 | MS.gene58945 | -0.800916 | 1.15E-48 | -1.69E-46 |
| MS.gene049313 | MS.gene58945 | 0.806985 | 6.31E-50 | -1.69E-46 |
| MS.gene049320 | MS.gene58945 | -0.830432 | 2.95E-55 | -1.69E-46 |
| MS.gene049483 | MS.gene58945 | 0.826174 | 3.14E-54 | -1.69E-46 |
| MS.gene049611 | MS.gene58945 | 0.806102 | 9.68E-50 | -1.69E-46 |
| MS.gene05010 | MS.gene58945 | -0.807571 | 4.74E-50 | -1.69E-46 |
| MS.gene050129 | MS.gene58945 | 0.812798 | 3.54E-51 | -1.69E-46 |
| MS.gene050165 | MS.gene58945 | -0.80468 | 1.92E-49 | -1.69E-46 |
| MS.gene050173 | MS.gene58945 | 0.866994 | 1.90E-65 | -1.69E-46 |
| MS.gene050309 | MS.gene58945 | 0.800391 | 1.47E-48 | -1.69E-46 |
| MS.gene050363 | MS.gene58945 | 0.86035 | 2.20E-63 | -1.69E-46 |
| MS.gene050381 | MS.gene58945 | 0.870876 | 1.05E-66 | -1.69E-46 |
| MS.gene050416 | MS.gene58945 | 0.805068 | 1.60E-49 | -1.69E-46 |
| MS.gene050504 | MS.gene58945 | -0.827671 | 1.38E-54 | -1.69E-46 |
| MS.gene050612 | MS.gene58945 | -0.834695 | 2.58E-56 | -1.69E-46 |
| MS.gene050675 | MS.gene58945 | -0.801555 | 8.52E-49 | -1.69E-46 |
| MS.gene050868 | MS.gene58945 | -0.801994 | 6.92E-49 | -1.69E-46 |
| MS.gene050871 | MS.gene58945 | -0.801183 | 1.02E-48 | -1.69E-46 |
| MS.gene050883 | MS.gene58945 | 0.840478 | 8.49E-58 | -1.69E-46 |
| MS.gene050986 | MS.gene58945 | -0.808526 | 2.97E-50 | -1.69E-46 |
| MS.gene051044 | MS.gene58945 | 0.822832 | 1.92E-53 | -1.69E-46 |
| MS.gene051127 | MS.gene58945 | 0.840661 | 7.60E-58 | -1.69E-46 |
| MS.gene051138 | MS.gene58945 | 0.807261 | 5.51E-50 | -1.69E-46 |
| MS.gene051364 | MS.gene58945 | 0.823079 | 1.68E-53 | -1.69E-46 |
| MS.gene051366 | MS.gene58945 | 0.82594 | 3.56E-54 | -1.69E-46 |
| MS.gene051367 | MS.gene58945 | 0.803693 | 3.09E-49 | -1.69E-46 |
| MS.gene051564 | MS.gene58945 | -0.813982 | 1.94E-51 | -1.69E-46 |
| MS.gene051566 | MS.gene58945 | -0.806096 | 9.71E-50 | -1.69E-46 |
| MS.gene051810 | MS.gene58945 | -0.814065 | 1.86E-51 | -1.69E-46 |
| MS.gene051858 | MS.gene58945 | -0.804911 | 1.72E-49 | -1.69E-46 |
| MS.gene051946 | MS.gene58945 | 0.844346 | 8.00E-59 | -1.69E-46 |
| MS.gene052053 | MS.gene58945 | 0.801265 | 9.77E-49 | -1.69E-46 |
| MS.gene052566 | MS.gene58945 | 0.813256 | 2.81E-51 | -1.69E-46 |
| MS.gene053420 | MS.gene58945 | 0.849599 | 2.92E-60 | -1.69E-46 |
| MS.gene053488 | MS.gene58945 | 0.839109 | 1.93E-57 | -1.69E-46 |
| MS.gene053549 | MS.gene58945 | 0.826537 | 2.57E-54 | -1.69E-46 |
| MS.gene053561 | MS.gene58945 | 0.890128 | 1.30E-73 | -1.69E-46 |
| MS.gene054054 | MS.gene58945 | 0.810958 | 8.90E-51 | -1.69E-46 |
| MS.gene054056 | MS.gene58945 | 0.859614 | 3.66E-63 | -1.69E-46 |
| MS.gene054616 | MS.gene58945 | 0.851679 | 7.58E-61 | -1.69E-46 |
| MS.gene054642 | MS.gene58945 | -0.810805 | 9.60E-51 | -1.69E-46 |
| MS.gene054708 | MS.gene58945 | 0.855531 | 5.93E-62 | -1.69E-46 |
| MS.gene054954 | MS.gene58945 | -0.809233 | 2.09E-50 | -1.69E-46 |
| MS.gene054959 | MS.gene58945 | 0.845665 | 3.52E-59 | -1.69E-46 |
| MS.gene055124 | MS.gene58945 | 0.800272 | 1.56E-48 | -1.69E-46 |
| MS.gene055154 | MS.gene58945 | 0.86937 | 3.26E-66 | -1.69E-46 |
| MS.gene055202 | MS.gene58945 | 0.82116 | 4.68E-53 | -1.69E-46 |
| MS.gene055362 | MS.gene58945 | -0.826771 | 2.26E-54 | -1.69E-46 |
| MS.gene055502 | MS.gene58945 | -0.808388 | 3.17E-50 | -1.69E-46 |
| MS.gene055549 | MS.gene58945 | 0.838616 | 2.59E-57 | -1.69E-46 |
| MS.gene055550 | MS.gene58945 | 0.84678 | 1.75E-59 | -1.69E-46 |
| MS.gene055551 | MS.gene58945 | 0.801107 | 1.05E-48 | -1.69E-46 |
| MS.gene055577 | MS.gene58945 | -0.803959 | 2.72E-49 | -1.69E-46 |
| MS.gene055942 | MS.gene58945 | 0.832744 | 7.94E-56 | -1.69E-46 |
| MS.gene056310 | MS.gene58945 | 0.801313 | 9.55E-49 | -1.69E-46 |
| MS.gene056311 | MS.gene58945 | 0.851869 | 6.70E-61 | -1.69E-46 |
| MS.gene056504 | MS.gene58945 | -0.814549 | 1.46E-51 | -1.69E-46 |
| MS.gene056530 | MS.gene58945 | 0.820762 | 5.78E-53 | -1.69E-46 |
| MS.gene056550 | MS.gene58945 | 0.835201 | 1.93E-56 | -1.69E-46 |
| MS.gene056657 | MS.gene58945 | -0.817367 | 3.42E-52 | -1.69E-46 |
| MS.gene056761 | MS.gene58945 | 0.84345 | 1.39E-58 | -1.69E-46 |
| MS.gene057014 | MS.gene58945 | 0.865461 | 5.81E-65 | -1.69E-46 |
| MS.gene058099 | MS.gene58945 | 0.805943 | 1.05E-49 | -1.69E-46 |
| MS.gene058268 | MS.gene58945 | 0.822187 | 2.71E-53 | -1.69E-46 |
| MS.gene058269 | MS.gene58945 | 0.816607 | 5.07E-52 | -1.69E-46 |
| MS.gene058419 | MS.gene58945 | -0.801633 | 8.21E-49 | -1.69E-46 |
| MS.gene058493 | MS.gene58945 | 0.85546 | 6.22E-62 | -1.69E-46 |
| MS.gene058494 | MS.gene58945 | 0.831795 | 1.36E-55 | -1.69E-46 |
| MS.gene058496 | MS.gene58945 | 0.821255 | 4.45E-53 | -1.69E-46 |
| MS.gene058628 | MS.gene58945 | 0.828392 | 9.22E-55 | -1.69E-46 |
| MS.gene058629 | MS.gene58945 | 0.810337 | 1.21E-50 | -1.69E-46 |
| MS.gene058630 | MS.gene58945 | 0.814834 | 1.26E-51 | -1.69E-46 |
| MS.gene058773 | MS.gene58945 | -0.819696 | 1.01E-52 | -1.69E-46 |
| MS.gene058840 | MS.gene58945 | 0.815703 | 8.07E-52 | -1.69E-46 |
| MS.gene05884 | MS.gene58945 | 0.835943 | 1.25E-56 | -1.69E-46 |
| MS.gene059022 | MS.gene58945 | -0.850636 | 1.49E-60 | -1.69E-46 |
| MS.gene059677 | MS.gene58945 | -0.818733 | 1.68E-52 | -1.69E-46 |
| MS.gene059690 | MS.gene58945 | 0.83233 | 1.01E-55 | -1.69E-46 |
| MS.gene059691 | MS.gene58945 | 0.811377 | 7.22E-51 | -1.69E-46 |
| MS.gene059694 | MS.gene58945 | 0.82552 | 4.48E-54 | -1.69E-46 |
| MS.gene059697 | MS.gene58945 | 0.826573 | 2.52E-54 | -1.69E-46 |
| MS.gene059718 | MS.gene58945 | -0.808589 | 2.88E-50 | -1.69E-46 |
| MS.gene059865 | MS.gene58945 | -0.829556 | 4.82E-55 | -1.69E-46 |
| MS.gene059902 | MS.gene58945 | -0.813438 | 2.56E-51 | -1.69E-46 |
| MS.gene059916 | MS.gene58945 | 0.831359 | 1.75E-55 | -1.69E-46 |
| MS.gene060337 | MS.gene58945 | 0.824065 | 9.87E-54 | -1.69E-46 |
| MS.gene06046 | MS.gene58945 | -0.802936 | 4.43E-49 | -1.69E-46 |
| MS.gene060595 | MS.gene58945 | 0.834045 | 3.76E-56 | -1.69E-46 |
| MS.gene060703 | MS.gene58945 | -0.832685 | 8.21E-56 | -1.69E-46 |
| MS.gene060762 | MS.gene58945 | -0.800072 | 1.71E-48 | -1.69E-46 |
| MS.gene06077 | MS.gene58945 | -0.823983 | 1.03E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58945.t1 | MTR_4g118800 | 92.593 | 189 | 9 | 2 | 1 | 186 | 1 | 187 | 6.26e-106 | 301 |
| MS.gene58945.t1 | MTR_7g108130 | 34.591 | 159 | 91 | 4 | 30 | 180 | 29 | 182 | 1.74e-24 | 94.7 |
| MS.gene58945.t1 | MTR_2g020060 | 33.735 | 166 | 93 | 3 | 32 | 183 | 25 | 187 | 1.30e-21 | 87.4 |
| MS.gene58945.t1 | MTR_4g118810 | 31.361 | 169 | 91 | 4 | 5 | 159 | 17 | 174 | 3.26e-19 | 81.3 |
| MS.gene58945.t1 | MTR_0004s0210 | 34.194 | 155 | 87 | 4 | 32 | 182 | 10 | 153 | 4.24e-18 | 77.4 |
| MS.gene58945.t1 | MTR_4g081880 | 30.247 | 162 | 100 | 5 | 28 | 180 | 27 | 184 | 9.55e-16 | 72.0 |
| MS.gene58945.t1 | MTR_8g089300 | 31.206 | 141 | 83 | 3 | 32 | 159 | 28 | 167 | 1.57e-15 | 71.6 |
| MS.gene58945.t1 | MTR_7g011090 | 31.098 | 164 | 102 | 6 | 28 | 183 | 26 | 186 | 2.01e-14 | 68.6 |
| MS.gene58945.t1 | MTR_5g041900 | 34.839 | 155 | 87 | 5 | 28 | 170 | 26 | 178 | 7.99e-14 | 66.6 |
| MS.gene58945.t1 | MTR_7g083120 | 29.936 | 157 | 101 | 4 | 5 | 153 | 2 | 157 | 3.69e-13 | 65.1 |
| MS.gene58945.t1 | MTR_2g026530 | 32.692 | 156 | 99 | 3 | 31 | 180 | 32 | 187 | 1.05e-11 | 61.2 |
| MS.gene58945.t1 | MTR_2g026530 | 32.692 | 156 | 99 | 3 | 31 | 180 | 12 | 167 | 1.41e-11 | 60.5 |
| MS.gene58945.t1 | MTR_0097s0070 | 32.203 | 118 | 75 | 4 | 61 | 176 | 71 | 185 | 5.75e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58945.t1 | AT3G06390 | 47.399 | 173 | 74 | 3 | 1 | 156 | 1 | 173 | 2.51e-49 | 159 |
| MS.gene58945.t1 | AT4G15610 | 50.877 | 171 | 70 | 4 | 3 | 164 | 7 | 172 | 3.10e-49 | 158 |
| MS.gene58945.t1 | AT4G15610 | 62.766 | 94 | 35 | 0 | 71 | 164 | 23 | 116 | 1.21e-36 | 124 |
| MS.gene58945.t1 | AT4G15630 | 30.247 | 162 | 97 | 2 | 30 | 177 | 27 | 186 | 4.10e-20 | 83.6 |
| MS.gene58945.t1 | AT5G15290 | 31.618 | 136 | 84 | 4 | 31 | 159 | 29 | 162 | 8.50e-17 | 74.7 |
| MS.gene58945.t1 | AT4G15620 | 27.950 | 161 | 100 | 2 | 31 | 177 | 28 | 186 | 9.01e-17 | 74.7 |
| MS.gene58945.t1 | AT1G14160 | 29.487 | 156 | 102 | 4 | 28 | 177 | 49 | 202 | 1.67e-14 | 68.9 |
| MS.gene58945.t1 | AT2G36100 | 30.882 | 136 | 87 | 3 | 30 | 159 | 48 | 182 | 1.32e-12 | 63.9 |
| MS.gene58945.t1 | AT1G03700 | 28.758 | 153 | 97 | 3 | 32 | 180 | 11 | 155 | 1.24e-11 | 60.5 |
Find 45 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTGGGAGTGTTGCATATT+TGG | 0.167909 | 8.3:+7875736 | MS.gene58945:CDS |
| TTCTCCTCCATTTAATCTTC+TGG | 0.173285 | 8.3:+7875569 | MS.gene58945:CDS |
| GTGGCTGCATTCTCTGTTGC+TGG | 0.248825 | 8.3:+7875478 | MS.gene58945:CDS |
| TTGTCACTCTGTTGCTCATT+TGG | 0.263577 | 8.3:+7875864 | MS.gene58945:CDS |
| GGCTCCGGCTTCTTCGGCTT+CGG | 0.290085 | 8.3:+7874427 | MS.gene58945:CDS |
| CCGCATCCCAGAAGATTAAA+TGG | 0.293656 | 8.3:-7875576 | None:intergenic |
| GCTGGGAGTGTTGCATATTT+GGG | 0.294630 | 8.3:+7875737 | MS.gene58945:CDS |
| AGGGAAACAACCACACTAAT+TGG | 0.296811 | 8.3:+7875765 | MS.gene58945:CDS |
| GCTCCGGCTTCTTCGGCTTC+GGG | 0.310874 | 8.3:+7874428 | MS.gene58945:CDS |
| TCAGTTGTTGTGATGGTTAC+TGG | 0.316039 | 8.3:+7874515 | MS.gene58945:CDS |
| GATTAAATGGAGGAGAAGTT+TGG | 0.346130 | 8.3:-7875563 | None:intergenic |
| CAACTTTCTTCAAATCTACT+TGG | 0.347310 | 8.3:-7875918 | None:intergenic |
| TCTCCTCCATTTAATCTTCT+GGG | 0.353459 | 8.3:+7875570 | MS.gene58945:CDS |
| TTTCTCTTGCAGGTGATGTT+GGG | 0.377570 | 8.3:+7875689 | MS.gene58945:intron |
| GGGATATTAGCTTCAGCAAC+AGG | 0.379873 | 8.3:+7875710 | MS.gene58945:CDS |
| AACTCCGGCTCCGGCTTCTT+CGG | 0.390199 | 8.3:+7874421 | MS.gene58945:CDS |
| GCTTCAGCAACAGGCACAGC+TGG | 0.420135 | 8.3:+7875719 | MS.gene58945:CDS |
| TCTGTAGCAGTGGGATTGTT+TGG | 0.423026 | 8.3:+7875836 | MS.gene58945:CDS |
| TGGCTGCATTCTCTGTTGCT+GGG | 0.437451 | 8.3:+7875479 | MS.gene58945:CDS |
| ATCATCTTCAACTCCGGCTC+CGG | 0.452738 | 8.3:+7874412 | MS.gene58945:CDS |
| CTAAGTTTGATTTGATCCTA+AGG | 0.461173 | 8.3:+7874465 | MS.gene58945:CDS |
| TGTTGCATATTTGGGTTTGA+AGG | 0.466255 | 8.3:+7875745 | MS.gene58945:CDS |
| ATTTCTCTTGCAGGTGATGT+TGG | 0.478178 | 8.3:+7875688 | MS.gene58945:intron |
| AACTTTCTTCAAATCTACTT+GGG | 0.490912 | 8.3:-7875917 | None:intergenic |
| GTTGAAGATGATTTGTACTC+AGG | 0.496735 | 8.3:-7874401 | None:intergenic |
| TGCAAAACTTACACAAAGGC+TGG | 0.513124 | 8.3:-7874581 | None:intergenic |
| ACACCCGAAGCCGAAGAAGC+CGG | 0.514862 | 8.3:-7874431 | None:intergenic |
| TCTGTTGTTTGCAGCATCAG+TGG | 0.515368 | 8.3:+7874490 | MS.gene58945:CDS |
| GGCTGGTGAGTATCTAAACT+TGG | 0.516960 | 8.3:-7874564 | None:intergenic |
| GAGCAAGACATGGCTTCTAC+TGG | 0.517836 | 8.3:+7874374 | None:intergenic |
| GAAGCCGAAGAAGCCGGAGC+CGG | 0.518970 | 8.3:-7874425 | None:intergenic |
| GTTGCATATTTGGGTTTGAA+GGG | 0.522790 | 8.3:+7875746 | MS.gene58945:CDS |
| TTTGAGGTTTGGCTTTCGGA+TGG | 0.533858 | 8.3:-7875539 | None:intergenic |
| CTGCAAACAACAGAAACCTT+AGG | 0.533947 | 8.3:-7874481 | None:intergenic |
| GGTGAGTATCTAAACTTGGC+TGG | 0.534764 | 8.3:-7874560 | None:intergenic |
| TTCTCTTGCAGGTGATGTTG+GGG | 0.535972 | 8.3:+7875690 | MS.gene58945:intron |
| CCATTTAATCTTCTGGGATG+CGG | 0.538436 | 8.3:+7875576 | MS.gene58945:CDS |
| TATGGGTGCCTCTGTAGCAG+TGG | 0.553144 | 8.3:+7875826 | MS.gene58945:CDS |
| GTACAAATCATCTTCAACTC+CGG | 0.560040 | 8.3:+7874406 | MS.gene58945:CDS |
| AAACAATCCCACTGCTACAG+AGG | 0.565188 | 8.3:-7875834 | None:intergenic |
| ATGGGTGCCTCTGTAGCAGT+GGG | 0.565933 | 8.3:+7875827 | MS.gene58945:CDS |
| CTTCAGCAACAGGCACAGCT+GGG | 0.583484 | 8.3:+7875720 | MS.gene58945:CDS |
| AGTGGCATCAGTTGTTGTGA+TGG | 0.612540 | 8.3:+7874508 | MS.gene58945:CDS |
| TGCAAAACTTGTCATAGATG+TGG | 0.673434 | 8.3:-7875799 | None:intergenic |
| CATCCCAGAAGATTAAATGG+AGG | 0.717011 | 8.3:-7875573 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAGAAATTATATAAAAAAA+TGG | + | chr8.3:7874936-7874955 | MS.gene58945:intron | 10.0% |
| !!! | AATATAATAATTTTCACTAT+TGG | - | chr8.3:7875095-7875114 | None:intergenic | 10.0% |
| !!! | ATTATATAAAAAAATGGATT+TGG | + | chr8.3:7874942-7874961 | MS.gene58945:intron | 10.0% |
| !! | AATTAATATCAATGAGAATA+AGG | - | chr8.3:7875408-7875427 | None:intergenic | 15.0% |
| !! | AAGGTAAAAATGGAATTAAA+AGG | - | chr8.3:7875621-7875640 | None:intergenic | 20.0% |
| !! | ATAACTATTAAGCATCTAAT+TGG | + | chr8.3:7874660-7874679 | MS.gene58945:intron | 20.0% |
| !! | ATCATTGGATTATGTTTAAA+AGG | - | chr8.3:7875670-7875689 | None:intergenic | 20.0% |
| !! | GAAGAAAATTGTAACATAAA+TGG | - | chr8.3:7874989-7875008 | None:intergenic | 20.0% |
| !! | TAGTTATTTGCAATATTCTT+GGG | + | chr8.3:7874725-7874744 | MS.gene58945:intron | 20.0% |
| !! | TTAGTTATTTGCAATATTCT+TGG | + | chr8.3:7874724-7874743 | MS.gene58945:intron | 20.0% |
| !!! | TTATAATCACAGATATTTTG+TGG | + | chr8.3:7875459-7875478 | MS.gene58945:intron | 20.0% |
| ! | AGTATTTAGCAAGGTAAAAA+TGG | - | chr8.3:7875631-7875650 | None:intergenic | 25.0% |
| ! | ATAACAAACATAAAACTCAG+CGG | - | chr8.3:7874687-7874706 | None:intergenic | 25.0% |
| ! | ATGAGAATAAGGTCTTAATA+TGG | - | chr8.3:7875397-7875416 | None:intergenic | 25.0% |
| ! | GAGTATAATAGTATTTAGCA+AGG | - | chr8.3:7875640-7875659 | None:intergenic | 25.0% |
| ! | TCATAATTTATGAGACACTA+AGG | + | chr8.3:7875031-7875050 | MS.gene58945:intron | 25.0% |
| ! | TTAATTAGGAGAAAGAAAAG+CGG | - | chr8.3:7875247-7875266 | None:intergenic | 25.0% |
| !! | AAATTTTATGCCAATTAGTG+TGG | - | chr8.3:7875778-7875797 | None:intergenic | 25.0% |
| AGAATAAGGTCTTAATATGG+TGG | - | chr8.3:7875394-7875413 | None:intergenic | 30.0% | |
| ATCATGCAAAACTTACACAA+AGG | - | chr8.3:7874588-7874607 | None:intergenic | 30.0% | |
| GAATAAGGTCTTAATATGGT+GGG | - | chr8.3:7875393-7875412 | None:intergenic | 30.0% | |
| GTATCAATCAAATGGAGAAT+TGG | - | chr8.3:7875225-7875244 | None:intergenic | 30.0% | |
| ! | CTAGCTGATAGAATTAGTTT+CGG | - | chr8.3:7874837-7874856 | None:intergenic | 30.0% |
| !! | CTAAGTTTGATTTGATCCTA+AGG | + | chr8.3:7874465-7874484 | MS.gene58945:CDS | 30.0% |
| AATCCAATGATTTCTCTTGC+AGG | + | chr8.3:7875679-7875698 | MS.gene58945:intron | 35.0% | |
| ACATGACCATATTCCATAGT+AGG | - | chr8.3:7874764-7874783 | None:intergenic | 35.0% | |
| AGACACTAAGGATATTGTAG+GGG | + | chr8.3:7875043-7875062 | MS.gene58945:intron | 35.0% | |
| ATTCCATAGTAGGAACTACT+AGG | - | chr8.3:7874754-7874773 | None:intergenic | 35.0% | |
| CAGCTAGACTCAATTTCAAT+AGG | + | chr8.3:7874850-7874869 | MS.gene58945:intron | 35.0% | |
| GAAAAGCGGTATCAATCAAA+TGG | - | chr8.3:7875233-7875252 | None:intergenic | 35.0% | |
| GAGACACTAAGGATATTGTA+GGG | + | chr8.3:7875042-7875061 | MS.gene58945:intron | 35.0% | |
| GATTAAATGGAGGAGAAGTT+TGG | - | chr8.3:7875566-7875585 | None:intergenic | 35.0% | |
| GTACAAATCATCTTCAACTC+CGG | + | chr8.3:7874406-7874425 | MS.gene58945:CDS | 35.0% | |
| GTAGTTCCTACTATGGAATA+TGG | + | chr8.3:7874755-7874774 | MS.gene58945:intron | 35.0% | |
| TCTCCTCCATTTAATCTTCT+GGG | + | chr8.3:7875570-7875589 | MS.gene58945:CDS | 35.0% | |
| TGAGACACTAAGGATATTGT+AGG | + | chr8.3:7875041-7875060 | MS.gene58945:intron | 35.0% | |
| TGCAAAACTTGTCATAGATG+TGG | - | chr8.3:7875802-7875821 | None:intergenic | 35.0% | |
| TTCTCCTCCATTTAATCTTC+TGG | + | chr8.3:7875569-7875588 | MS.gene58945:CDS | 35.0% | |
| TTTCCTAGTAGTTCCTACTA+TGG | + | chr8.3:7874748-7874767 | MS.gene58945:intron | 35.0% | |
| ! | ACATCTATGACAAGTTTTGC+AGG | + | chr8.3:7875801-7875820 | MS.gene58945:CDS | 35.0% |
| ! | GAAAGACTCTACTCTTTTGA+AGG | + | chr8.3:7875315-7875334 | MS.gene58945:intron | 35.0% |
| ! | GTTGAAGATGATTTGTACTC+AGG | - | chr8.3:7874404-7874423 | None:intergenic | 35.0% |
| ! | GTTGCATATTTGGGTTTGAA+GGG | + | chr8.3:7875746-7875765 | MS.gene58945:CDS | 35.0% |
| ! | TAATATGGTGGGAACATATG+TGG | - | chr8.3:7875382-7875401 | None:intergenic | 35.0% |
| ! | TGTTGCATATTTGGGTTTGA+AGG | + | chr8.3:7875745-7875764 | MS.gene58945:CDS | 35.0% |
| ! | TTTGAAGTATGCATCTCTCT+CGG | + | chr8.3:7874783-7874802 | MS.gene58945:intron | 35.0% |
| !! | CTACTCTTTTGAAGGCTATA+AGG | + | chr8.3:7875323-7875342 | MS.gene58945:intron | 35.0% |
| !!! | AGAAGTTTGGTTTTGAGGTT+TGG | - | chr8.3:7875553-7875572 | None:intergenic | 35.0% |
| AGGGAAACAACCACACTAAT+TGG | + | chr8.3:7875765-7875784 | MS.gene58945:CDS | 40.0% | |
| ATTTCTCTTGCAGGTGATGT+TGG | + | chr8.3:7875688-7875707 | MS.gene58945:intron | 40.0% | |
| CATCCCAGAAGATTAAATGG+AGG | - | chr8.3:7875576-7875595 | None:intergenic | 40.0% | |
| CTGCAAACAACAGAAACCTT+AGG | - | chr8.3:7874484-7874503 | None:intergenic | 40.0% | |
| TCACCTGCAAGAGAAATCAT+TGG | - | chr8.3:7875685-7875704 | None:intergenic | 40.0% | |
| TCAGTTGTTGTGATGGTTAC+TGG | + | chr8.3:7874515-7874534 | MS.gene58945:CDS | 40.0% | |
| TGCAAAACTTACACAAAGGC+TGG | - | chr8.3:7874584-7874603 | None:intergenic | 40.0% | |
| TTGTCACTCTGTTGCTCATT+TGG | + | chr8.3:7875864-7875883 | MS.gene58945:CDS | 40.0% | |
| TTTCTCTTGCAGGTGATGTT+GGG | + | chr8.3:7875689-7875708 | MS.gene58945:intron | 40.0% | |
| ! | GACAAGTTTTGCAGGCATAT+GGG | + | chr8.3:7875809-7875828 | MS.gene58945:CDS | 40.0% |
| ! | TGACAAGTTTTGCAGGCATA+TGG | + | chr8.3:7875808-7875827 | MS.gene58945:CDS | 40.0% |
| !! | CCATTTAATCTTCTGGGATG+CGG | + | chr8.3:7875576-7875595 | MS.gene58945:CDS | 40.0% |
| !! | CTCTTTTGAAGGCTATAAGG+AGG | + | chr8.3:7875326-7875345 | MS.gene58945:intron | 40.0% |
| !!! | TGGTTTTGAGGTTTGGCTTT+CGG | - | chr8.3:7875546-7875565 | None:intergenic | 40.0% |
| AAACAATCCCACTGCTACAG+AGG | - | chr8.3:7875837-7875856 | None:intergenic | 45.0% | |
| AGTGGCATCAGTTGTTGTGA+TGG | + | chr8.3:7874508-7874527 | MS.gene58945:CDS | 45.0% | |
| CCGCATCCCAGAAGATTAAA+TGG | - | chr8.3:7875579-7875598 | None:intergenic | 45.0% | |
| GGCTGGTGAGTATCTAAACT+TGG | - | chr8.3:7874567-7874586 | None:intergenic | 45.0% | |
| GGTGAGTATCTAAACTTGGC+TGG | - | chr8.3:7874563-7874582 | None:intergenic | 45.0% | |
| TCTGTAGCAGTGGGATTGTT+TGG | + | chr8.3:7875836-7875855 | MS.gene58945:CDS | 45.0% | |
| TTCTCTTGCAGGTGATGTTG+GGG | + | chr8.3:7875690-7875709 | MS.gene58945:intron | 45.0% | |
| ! | GGGATATTAGCTTCAGCAAC+AGG | + | chr8.3:7875710-7875729 | MS.gene58945:CDS | 45.0% |
| ! | TCTGTTGTTTGCAGCATCAG+TGG | + | chr8.3:7874490-7874509 | MS.gene58945:CDS | 45.0% |
| !! | AGCTGGGAGTGTTGCATATT+TGG | + | chr8.3:7875736-7875755 | MS.gene58945:CDS | 45.0% |
| !! | GCTGGGAGTGTTGCATATTT+GGG | + | chr8.3:7875737-7875756 | MS.gene58945:CDS | 45.0% |
| !! | TTTGAGGTTTGGCTTTCGGA+TGG | - | chr8.3:7875542-7875561 | None:intergenic | 45.0% |
| !!! | GGAGGAGAAGTTTGGTTTTG+AGG | - | chr8.3:7875558-7875577 | None:intergenic | 45.0% |
| !! | TAAATAAATAAATGATATAT+TGG | - | chr8.3:7875180-7875199 | None:intergenic | 5.0% |
| !! | TTTGTTTATTAAATTTAATT+AGG | - | chr8.3:7875261-7875280 | None:intergenic | 5.0% |
| ATCATCTTCAACTCCGGCTC+CGG | + | chr8.3:7874412-7874431 | MS.gene58945:CDS | 50.0% | |
| TGGCTGCATTCTCTGTTGCT+GGG | + | chr8.3:7875479-7875498 | MS.gene58945:CDS | 50.0% | |
| ATGGGTGCCTCTGTAGCAGT+GGG | + | chr8.3:7875827-7875846 | MS.gene58945:CDS | 55.0% | |
| CTTCAGCAACAGGCACAGCT+GGG | + | chr8.3:7875720-7875739 | MS.gene58945:CDS | 55.0% | |
| GTGGCTGCATTCTCTGTTGC+TGG | + | chr8.3:7875478-7875497 | MS.gene58945:CDS | 55.0% | |
| TATGGGTGCCTCTGTAGCAG+TGG | + | chr8.3:7875826-7875845 | MS.gene58945:CDS | 55.0% | |
| AACTCCGGCTCCGGCTTCTT+CGG | + | chr8.3:7874421-7874440 | MS.gene58945:CDS | 60.0% | |
| ACACCCGAAGCCGAAGAAGC+CGG | - | chr8.3:7874434-7874453 | None:intergenic | 60.0% | |
| GCTTCAGCAACAGGCACAGC+TGG | + | chr8.3:7875719-7875738 | MS.gene58945:CDS | 60.0% | |
| GAAGCCGAAGAAGCCGGAGC+CGG | - | chr8.3:7874428-7874447 | None:intergenic | 65.0% | |
| GCTCCGGCTTCTTCGGCTTC+GGG | + | chr8.3:7874428-7874447 | MS.gene58945:CDS | 65.0% | |
| GGCTCCGGCTTCTTCGGCTT+CGG | + | chr8.3:7874427-7874446 | MS.gene58945:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 7874383 | 7875925 | 7874383 | ID=MS.gene58945 |
| chr8.3 | mRNA | 7874383 | 7875925 | 7874383 | ID=MS.gene58945.t1;Parent=MS.gene58945 |
| chr8.3 | exon | 7874383 | 7874591 | 7874383 | ID=MS.gene58945.t1.exon1;Parent=MS.gene58945.t1 |
| chr8.3 | CDS | 7874383 | 7874591 | 7874383 | ID=cds.MS.gene58945.t1;Parent=MS.gene58945.t1 |
| chr8.3 | exon | 7875471 | 7875597 | 7875471 | ID=MS.gene58945.t1.exon2;Parent=MS.gene58945.t1 |
| chr8.3 | CDS | 7875471 | 7875597 | 7875471 | ID=cds.MS.gene58945.t1;Parent=MS.gene58945.t1 |
| chr8.3 | exon | 7875701 | 7875925 | 7875701 | ID=MS.gene58945.t1.exon3;Parent=MS.gene58945.t1 |
| chr8.3 | CDS | 7875701 | 7875925 | 7875701 | ID=cds.MS.gene58945.t1;Parent=MS.gene58945.t1 |
| Gene Sequence |
| Protein sequence |
