Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59417.t1 | AFK35347.1 | 96.9 | 127 | 4 | 0 | 1 | 127 | 1 | 127 | 4.30E-61 | 243.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59417.t1 | Q9FVX1 | 67.5 | 120 | 39 | 0 | 8 | 127 | 11 | 130 | 2.5e-38 | 159.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59417.t1 | G7KG98 | 96.9 | 127 | 4 | 0 | 1 | 127 | 3 | 129 | 3.1e-61 | 243.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene59417 | 0.818421 | 1.98E-52 | -1.69E-46 |
| MS.gene04918 | MS.gene59417 | 0.810191 | 1.30E-50 | -1.69E-46 |
| MS.gene04920 | MS.gene59417 | 0.803149 | 4.00E-49 | -1.69E-46 |
| MS.gene049254 | MS.gene59417 | 0.831488 | 1.62E-55 | -1.69E-46 |
| MS.gene049283 | MS.gene59417 | 0.829214 | 5.84E-55 | -1.69E-46 |
| MS.gene049368 | MS.gene59417 | 0.838667 | 2.51E-57 | -1.69E-46 |
| MS.gene049419 | MS.gene59417 | -0.862554 | 4.67E-64 | -1.69E-46 |
| MS.gene049499 | MS.gene59417 | 0.841541 | 4.46E-58 | -1.69E-46 |
| MS.gene049983 | MS.gene59417 | 0.841803 | 3.81E-58 | -1.69E-46 |
| MS.gene050646 | MS.gene59417 | 0.821389 | 4.14E-53 | -1.69E-46 |
| MS.gene050654 | MS.gene59417 | 0.840083 | 1.08E-57 | -1.69E-46 |
| MS.gene050737 | MS.gene59417 | 0.801897 | 7.25E-49 | -1.69E-46 |
| MS.gene050941 | MS.gene59417 | 0.820229 | 7.66E-53 | -1.69E-46 |
| MS.gene051003 | MS.gene59417 | 0.8012 | 1.01E-48 | -1.69E-46 |
| MS.gene051275 | MS.gene59417 | 0.807174 | 5.75E-50 | -1.69E-46 |
| MS.gene051343 | MS.gene59417 | 0.814076 | 1.85E-51 | -1.69E-46 |
| MS.gene051490 | MS.gene59417 | 0.803529 | 3.34E-49 | -1.69E-46 |
| MS.gene051676 | MS.gene59417 | 0.828738 | 7.61E-55 | -1.69E-46 |
| MS.gene051902 | MS.gene59417 | 0.809057 | 2.28E-50 | -1.69E-46 |
| MS.gene051975 | MS.gene59417 | 0.845541 | 3.81E-59 | -1.69E-46 |
| MS.gene052108 | MS.gene59417 | 0.806332 | 8.66E-50 | -1.69E-46 |
| MS.gene052342 | MS.gene59417 | 0.80559 | 1.24E-49 | -1.69E-46 |
| MS.gene052434 | MS.gene59417 | 0.809435 | 1.89E-50 | -1.69E-46 |
| MS.gene052463 | MS.gene59417 | 0.808106 | 3.64E-50 | -1.69E-46 |
| MS.gene052493 | MS.gene59417 | 0.801062 | 1.07E-48 | -1.69E-46 |
| MS.gene052954 | MS.gene59417 | 0.807503 | 4.90E-50 | -1.69E-46 |
| MS.gene053006 | MS.gene59417 | 0.809831 | 1.56E-50 | -1.69E-46 |
| MS.gene053298 | MS.gene59417 | 0.811099 | 8.29E-51 | -1.69E-46 |
| MS.gene053340 | MS.gene59417 | 0.807195 | 5.69E-50 | -1.69E-46 |
| MS.gene05350 | MS.gene59417 | 0.823578 | 1.28E-53 | -1.69E-46 |
| MS.gene053726 | MS.gene59417 | 0.801444 | 8.98E-49 | -1.69E-46 |
| MS.gene053931 | MS.gene59417 | 0.820752 | 5.81E-53 | -1.69E-46 |
| MS.gene053963 | MS.gene59417 | 0.804708 | 1.90E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene59417 | 0.848302 | 6.68E-60 | -1.69E-46 |
| MS.gene05458 | MS.gene59417 | 0.809203 | 2.13E-50 | -1.69E-46 |
| MS.gene054657 | MS.gene59417 | 0.809352 | 1.97E-50 | -1.69E-46 |
| MS.gene05469 | MS.gene59417 | 0.832576 | 8.74E-56 | -1.69E-46 |
| MS.gene054892 | MS.gene59417 | 0.84187 | 3.66E-58 | -1.69E-46 |
| MS.gene054893 | MS.gene59417 | 0.845327 | 4.35E-59 | -1.69E-46 |
| MS.gene05517 | MS.gene59417 | 0.827434 | 1.57E-54 | -1.69E-46 |
| MS.gene055313 | MS.gene59417 | 0.808405 | 3.15E-50 | -1.69E-46 |
| MS.gene055513 | MS.gene59417 | 0.830438 | 2.94E-55 | -1.69E-46 |
| MS.gene055623 | MS.gene59417 | 0.832231 | 1.06E-55 | -1.69E-46 |
| MS.gene055841 | MS.gene59417 | 0.822171 | 2.73E-53 | -1.69E-46 |
| MS.gene055864 | MS.gene59417 | 0.802104 | 6.57E-49 | -1.69E-46 |
| MS.gene056045 | MS.gene59417 | 0.813465 | 2.52E-51 | -1.69E-46 |
| MS.gene056181 | MS.gene59417 | 0.814387 | 1.58E-51 | -1.69E-46 |
| MS.gene056699 | MS.gene59417 | 0.862565 | 4.63E-64 | -1.69E-46 |
| MS.gene056776 | MS.gene59417 | 0.819593 | 1.07E-52 | -1.69E-46 |
| MS.gene056779 | MS.gene59417 | 0.815624 | 8.40E-52 | -1.69E-46 |
| MS.gene056787 | MS.gene59417 | 0.802571 | 5.27E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene59417 | 0.809507 | 1.83E-50 | -1.69E-46 |
| MS.gene056973 | MS.gene59417 | 0.804257 | 2.36E-49 | -1.69E-46 |
| MS.gene056986 | MS.gene59417 | 0.827666 | 1.38E-54 | -1.69E-46 |
| MS.gene057034 | MS.gene59417 | 0.816538 | 5.25E-52 | -1.69E-46 |
| MS.gene057102 | MS.gene59417 | 0.834827 | 2.39E-56 | -1.69E-46 |
| MS.gene057155 | MS.gene59417 | 0.830316 | 3.15E-55 | -1.69E-46 |
| MS.gene057208 | MS.gene59417 | 0.871426 | 6.90E-67 | -1.69E-46 |
| MS.gene057371 | MS.gene59417 | 0.802473 | 5.52E-49 | -1.69E-46 |
| MS.gene057890 | MS.gene59417 | -0.803237 | 3.84E-49 | -1.69E-46 |
| MS.gene058081 | MS.gene59417 | 0.846754 | 1.78E-59 | -1.69E-46 |
| MS.gene058159 | MS.gene59417 | 0.814754 | 1.31E-51 | -1.69E-46 |
| MS.gene058355 | MS.gene59417 | 0.810449 | 1.15E-50 | -1.69E-46 |
| MS.gene058429 | MS.gene59417 | 0.812258 | 4.64E-51 | -1.69E-46 |
| MS.gene058592 | MS.gene59417 | 0.807292 | 5.43E-50 | -1.69E-46 |
| MS.gene058708 | MS.gene59417 | -0.803775 | 2.97E-49 | -1.69E-46 |
| MS.gene05897 | MS.gene59417 | 0.800173 | 1.63E-48 | -1.69E-46 |
| MS.gene059146 | MS.gene59417 | 0.811581 | 6.52E-51 | -1.69E-46 |
| MS.gene059170 | MS.gene59417 | 0.802778 | 4.77E-49 | -1.69E-46 |
| MS.gene059439 | MS.gene59417 | 0.802379 | 5.77E-49 | -1.69E-46 |
| MS.gene05985 | MS.gene59417 | -0.84551 | 3.88E-59 | -1.69E-46 |
| MS.gene06010 | MS.gene59417 | 0.811194 | 7.91E-51 | -1.69E-46 |
| MS.gene060244 | MS.gene59417 | 0.84455 | 7.05E-59 | -1.69E-46 |
| MS.gene060259 | MS.gene59417 | 0.825431 | 4.71E-54 | -1.69E-46 |
| MS.gene060365 | MS.gene59417 | 0.823297 | 1.49E-53 | -1.69E-46 |
| MS.gene060527 | MS.gene59417 | 0.818431 | 1.97E-52 | -1.69E-46 |
| MS.gene060777 | MS.gene59417 | 0.807168 | 5.77E-50 | -1.69E-46 |
| MS.gene060850 | MS.gene59417 | 0.819288 | 1.26E-52 | -1.69E-46 |
| MS.gene060851 | MS.gene59417 | 0.827397 | 1.60E-54 | -1.69E-46 |
| MS.gene060852 | MS.gene59417 | 0.826136 | 3.20E-54 | -1.69E-46 |
| MS.gene060932 | MS.gene59417 | 0.812345 | 4.44E-51 | -1.69E-46 |
| MS.gene060933 | MS.gene59417 | 0.834836 | 2.38E-56 | -1.69E-46 |
| MS.gene060935 | MS.gene59417 | 0.855224 | 7.28E-62 | -1.69E-46 |
| MS.gene060937 | MS.gene59417 | 0.864107 | 1.54E-64 | -1.69E-46 |
| MS.gene061100 | MS.gene59417 | 0.805148 | 1.54E-49 | -1.69E-46 |
| MS.gene061188 | MS.gene59417 | 0.823454 | 1.37E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59417.t1 | MTR_5g021090 | 96.850 | 127 | 4 | 0 | 1 | 127 | 3 | 129 | 6.38e-90 | 256 |
| MS.gene59417.t1 | MTR_2g038560 | 57.547 | 106 | 45 | 0 | 19 | 124 | 16 | 121 | 3.78e-41 | 133 |
| MS.gene59417.t1 | MTR_2g038560 | 57.547 | 106 | 45 | 0 | 19 | 124 | 57 | 162 | 1.62e-40 | 133 |
| MS.gene59417.t1 | MTR_2g038560 | 57.547 | 106 | 45 | 0 | 19 | 124 | 60 | 165 | 1.69e-40 | 133 |
| MS.gene59417.t1 | MTR_7g035245 | 45.556 | 90 | 49 | 0 | 38 | 127 | 10 | 99 | 2.16e-24 | 90.1 |
| MS.gene59417.t1 | MTR_3g077570 | 43.182 | 88 | 50 | 0 | 40 | 127 | 27 | 114 | 1.32e-20 | 80.9 |
| MS.gene59417.t1 | MTR_1g069255 | 41.304 | 92 | 53 | 1 | 34 | 124 | 86 | 177 | 6.72e-20 | 80.9 |
| MS.gene59417.t1 | MTR_3g077560 | 42.353 | 85 | 49 | 0 | 40 | 124 | 30 | 114 | 2.25e-19 | 77.8 |
| MS.gene59417.t1 | MTR_7g108260 | 38.372 | 86 | 52 | 1 | 43 | 127 | 13 | 98 | 1.79e-12 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59417.t1 | AT1G77370 | 67.500 | 120 | 39 | 0 | 8 | 127 | 11 | 130 | 2.32e-54 | 166 |
| MS.gene59417.t1 | AT1G77370 | 55.479 | 146 | 39 | 1 | 8 | 127 | 11 | 156 | 2.01e-48 | 152 |
| MS.gene59417.t1 | AT5G20500 | 51.667 | 120 | 58 | 0 | 5 | 124 | 6 | 125 | 1.33e-40 | 132 |
| MS.gene59417.t1 | AT5G40370 | 45.977 | 87 | 47 | 0 | 38 | 124 | 10 | 96 | 1.04e-22 | 85.9 |
| MS.gene59417.t1 | AT5G40370 | 48.750 | 80 | 41 | 0 | 45 | 124 | 42 | 121 | 2.05e-20 | 80.9 |
| MS.gene59417.t1 | AT4G28730 | 44.565 | 92 | 50 | 1 | 34 | 124 | 73 | 164 | 2.25e-20 | 81.6 |
| MS.gene59417.t1 | AT2G20270 | 41.304 | 92 | 53 | 1 | 34 | 124 | 78 | 169 | 5.32e-19 | 78.6 |
| MS.gene59417.t1 | AT5G63030 | 42.683 | 82 | 47 | 0 | 43 | 124 | 31 | 112 | 6.82e-18 | 73.9 |
| MS.gene59417.t1 | AT4G28730 | 45.588 | 68 | 36 | 1 | 34 | 100 | 73 | 140 | 4.45e-13 | 62.0 |
| MS.gene59417.t1 | AT5G14070 | 30.400 | 125 | 72 | 2 | 18 | 127 | 11 | 135 | 9.91e-11 | 55.8 |
Find 26 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAATTCAGGGTGTTCTTC+TGG | 0.247136 | 5.4:+12909367 | MS.gene59417:CDS |
| AGATGATGGGTATCAAATTC+AGG | 0.269297 | 5.4:+12909355 | MS.gene59417:intron |
| GTCCCACAAGTGTTTGTCTA+TGG | 0.290060 | 5.4:+12909410 | MS.gene59417:CDS |
| GGTTCCGTTCTCAAACAATA+AGG | 0.298246 | 5.4:-12908516 | None:intergenic |
| TACGTACGGGCAATAGGATT+TGG | 0.352701 | 5.4:-12908606 | None:intergenic |
| TATATATACGTACGGGCAAT+AGG | 0.386425 | 5.4:-12908612 | None:intergenic |
| GGTGTTCTTCTGGATTTGAT+TGG | 0.395517 | 5.4:+12909377 | MS.gene59417:CDS |
| GGAAACTGAATTTGAAGCTT+CGG | 0.429054 | 5.4:-12908537 | None:intergenic |
| GTTCCGTTCTCAAACAATAA+GGG | 0.444259 | 5.4:-12908515 | None:intergenic |
| TTTGTGCTTGTTTAGATGAT+GGG | 0.450399 | 5.4:+12909342 | MS.gene59417:intron |
| CTCAAACAATAAGGGTAAAA+CGG | 0.475865 | 5.4:-12908507 | None:intergenic |
| TCCCATAGACAAACACTTGT+GGG | 0.486540 | 5.4:-12909412 | None:intergenic |
| GATGATGGGTATCAAATTCA+GGG | 0.487362 | 5.4:+12909356 | MS.gene59417:intron |
| TTTGTCTATGGGAAGCATAT+TGG | 0.501883 | 5.4:+12909422 | MS.gene59417:CDS |
| AAATCAAGCTCAACAACAAA+AGG | 0.509148 | 5.4:-12908758 | None:intergenic |
| GTCTATGGGAAGCATATTGG+TGG | 0.513655 | 5.4:+12909425 | MS.gene59417:CDS |
| GGAGAAGATGGTGATTCTGT+TGG | 0.515760 | 5.4:-12908585 | None:intergenic |
| GCAATAGGATTTGGAGAAGA+TGG | 0.516584 | 5.4:-12908597 | None:intergenic |
| TCCCACAAGTGTTTGTCTAT+GGG | 0.535106 | 5.4:+12909411 | MS.gene59417:CDS |
| AAGCATATTGGTGGATCAGA+TGG | 0.559694 | 5.4:+12909434 | MS.gene59417:CDS |
| GTTTCTGCAATTCACCACTC+TGG | 0.562376 | 5.4:-12910235 | None:intergenic |
| TTACCCTTATTGTTTGAGAA+CGG | 0.579036 | 5.4:+12908512 | MS.gene59417:CDS |
| TTCCCATAGACAAACACTTG+TGG | 0.621034 | 5.4:-12909413 | None:intergenic |
| GAAGAATGAAGATGTTACAG+TGG | 0.663384 | 5.4:+12908456 | None:intergenic |
| GTTGTTGAGCTTGATTTGCG+AGG | 0.668245 | 5.4:+12908764 | MS.gene59417:CDS |
| CTCAGTGCTGCAGTCCAGAG+TGG | 0.673667 | 5.4:+12910221 | MS.gene59417:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATCTATATGTCATTATAAA+AGG | + | chr5.4:12910134-12910153 | MS.gene59417:intron | 15.0% |
| !!! | AAGGGAATATTTATTATTTT+CGG | - | chr5.4:12909960-12909979 | None:intergenic | 15.0% |
| !!! | TATGTGTTTTGATATTTTTA+AGG | + | chr5.4:12908970-12908989 | MS.gene59417:intron | 15.0% |
| !!! | TTTTTTTCCATATACTTTAA+AGG | + | chr5.4:12910052-12910071 | MS.gene59417:intron | 15.0% |
| !! | AAATAACCTATATACATAAG+AGG | - | chr5.4:12909067-12909086 | None:intergenic | 20.0% |
| !! | AATAACCTATATACATAAGA+GGG | - | chr5.4:12909066-12909085 | None:intergenic | 20.0% |
| !! | ATAAAAAAAAACTGCTTTCA+TGG | + | chr5.4:12909157-12909176 | MS.gene59417:intron | 20.0% |
| !! | CTCTATATCCAAAAATATAA+GGG | + | chr5.4:12909874-12909893 | MS.gene59417:intron | 20.0% |
| !! | TAAACTATATGAAAATAACG+AGG | + | chr5.4:12909821-12909840 | MS.gene59417:intron | 20.0% |
| !! | TATGTCATTATAAAAGGTTA+AGG | + | chr5.4:12910140-12910159 | MS.gene59417:intron | 20.0% |
| !! | TCATATAGTTTAAGAACTAA+AGG | - | chr5.4:12909813-12909832 | None:intergenic | 20.0% |
| !!! | ATTAAGTTGTTTATCAAACA+AGG | - | chr5.4:12908833-12908852 | None:intergenic | 20.0% |
| !!! | CTTATATTTTTGGATATAGA+GGG | - | chr5.4:12909875-12909894 | None:intergenic | 20.0% |
| !!! | TATTTAGCCTTTAAAGTATA+TGG | - | chr5.4:12910062-12910081 | None:intergenic | 20.0% |
| !!! | TGATAGAAATTTTTTATGAG+AGG | + | chr5.4:12909926-12909945 | MS.gene59417:intron | 20.0% |
| ! | AAGAGAGTTATATATACGTA+CGG | - | chr5.4:12908623-12908642 | None:intergenic | 25.0% |
| ! | AATGATAACAGTTGTCTATT+TGG | - | chr5.4:12909290-12909309 | None:intergenic | 25.0% |
| ! | ATGAAATTAATATGCTCTGT+CGG | + | chr5.4:12908880-12908899 | MS.gene59417:intron | 25.0% |
| ! | ATTCAAATAGTATACTCAGT+CGG | - | chr5.4:12909030-12909049 | None:intergenic | 25.0% |
| ! | CCTCTATATCCAAAAATATA+AGG | + | chr5.4:12909873-12909892 | MS.gene59417:intron | 25.0% |
| ! | TAATGAAGGGATTAAATTGA+AGG | + | chr5.4:12910095-12910114 | MS.gene59417:intron | 25.0% |
| ! | TATATCCAAAAATATAAGGG+TGG | + | chr5.4:12909877-12909896 | MS.gene59417:intron | 25.0% |
| ! | TATGAAAATAACGAGGAATT+TGG | + | chr5.4:12909828-12909847 | MS.gene59417:intron | 25.0% |
| ! | TCAATTATTATCACGTGTTA+GGG | + | chr5.4:12908649-12908668 | MS.gene59417:intron | 25.0% |
| ! | TTCAATTATTATCACGTGTT+AGG | + | chr5.4:12908648-12908667 | MS.gene59417:intron | 25.0% |
| !! | ACAAATTTTCACATACTCAA+GGG | - | chr5.4:12909978-12909997 | None:intergenic | 25.0% |
| !! | ATACTTTAAAGGCTAAATAG+AGG | + | chr5.4:12910063-12910082 | MS.gene59417:intron | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+AGG | - | chr5.4:12909559-12909578 | None:intergenic | 25.0% |
| !! | TTTTCATAAGTGTTTATGTC+AGG | + | chr5.4:12909242-12909261 | MS.gene59417:intron | 25.0% |
| !!! | CCTTATATTTTTGGATATAG+AGG | - | chr5.4:12909876-12909895 | None:intergenic | 25.0% |
| AAATCAAGCTCAACAACAAA+AGG | - | chr5.4:12908761-12908780 | None:intergenic | 30.0% | |
| AGAGAGTTATATATACGTAC+GGG | - | chr5.4:12908622-12908641 | None:intergenic | 30.0% | |
| ATGAGCAAACTTTGTAAGAA+TGG | - | chr5.4:12910187-12910206 | None:intergenic | 30.0% | |
| CATTAGTACTTAAGATGCTA+GGG | - | chr5.4:12910010-12910029 | None:intergenic | 30.0% | |
| CTCAAACAATAAGGGTAAAA+CGG | - | chr5.4:12908510-12908529 | None:intergenic | 30.0% | |
| CTTAAGTACTAATGAGACAA+GGG | + | chr5.4:12910016-12910035 | MS.gene59417:intron | 30.0% | |
| TAACAGTTGTCTATTTGGAT+TGG | - | chr5.4:12909285-12909304 | None:intergenic | 30.0% | |
| TCATTAGTACTTAAGATGCT+AGG | - | chr5.4:12910011-12910030 | None:intergenic | 30.0% | |
| TCTTAAGTACTAATGAGACA+AGG | + | chr5.4:12910015-12910034 | MS.gene59417:intron | 30.0% | |
| TGATACCCTCTTATGTATAT+AGG | + | chr5.4:12909058-12909077 | MS.gene59417:intron | 30.0% | |
| TTAAGTACTAATGAGACAAG+GGG | + | chr5.4:12910017-12910036 | MS.gene59417:intron | 30.0% | |
| TTACCCTTATTGTTTGAGAA+CGG | + | chr5.4:12908512-12908531 | MS.gene59417:CDS | 30.0% | |
| TTTCATACTTAGTCCTTGTT+TGG | + | chr5.4:12909543-12909562 | MS.gene59417:intron | 30.0% | |
| TTTGTGCTTGTTTAGATGAT+GGG | + | chr5.4:12909342-12909361 | MS.gene59417:intron | 30.0% | |
| ! | AATGTTTCTCTGATTTTCGT+AGG | + | chr5.4:12908690-12908709 | MS.gene59417:intron | 30.0% |
| ! | ACTTTCCACCCTTATATTTT+TGG | - | chr5.4:12909885-12909904 | None:intergenic | 30.0% |
| ! | AGAGGAGATAATGATAATGA+AGG | + | chr5.4:12910081-12910100 | MS.gene59417:intron | 30.0% |
| ! | GACAAATTTTCACATACTCA+AGG | - | chr5.4:12909979-12909998 | None:intergenic | 30.0% |
| ! | GAGGAGATAATGATAATGAA+GGG | + | chr5.4:12910082-12910101 | MS.gene59417:intron | 30.0% |
| ! | TTTTGTGCTTGTTTAGATGA+TGG | + | chr5.4:12909341-12909360 | MS.gene59417:intron | 30.0% |
| !! | ATAAGTTTTGTGAGTCTGTT+TGG | - | chr5.4:12909753-12909772 | None:intergenic | 30.0% |
| !! | TAAGTTTTGTGAGTCTGTTT+GGG | - | chr5.4:12909752-12909771 | None:intergenic | 30.0% |
| !! | TATATACATAAGAGGGTATC+AGG | - | chr5.4:12909059-12909078 | None:intergenic | 30.0% |
| !! | TCTTAGACTTTTGCTTTTCT+GGG | + | chr5.4:12909469-12909488 | MS.gene59417:intron | 30.0% |
| !! | TTCTTAGACTTTTGCTTTTC+TGG | + | chr5.4:12909468-12909487 | MS.gene59417:intron | 30.0% |
| ATGGATAGAGAAACACAAAG+AGG | - | chr5.4:12910168-12910187 | None:intergenic | 35.0% | |
| GTTCCGTTCTCAAACAATAA+GGG | - | chr5.4:12908518-12908537 | None:intergenic | 35.0% | |
| TAACGAGACAACACAATCAT+CGG | - | chr5.4:12908929-12908948 | None:intergenic | 35.0% | |
| TATATATACGTACGGGCAAT+AGG | - | chr5.4:12908615-12908634 | None:intergenic | 35.0% | |
| TGGATAGAGAAACACAAAGA+GGG | - | chr5.4:12910167-12910186 | None:intergenic | 35.0% | |
| TTAAGATGCTAGGGATTAAC+AGG | - | chr5.4:12910001-12910020 | None:intergenic | 35.0% | |
| ! | AAAGTTTTCGCGTAAGCTAT+AGG | + | chr5.4:12909095-12909114 | MS.gene59417:intron | 35.0% |
| ! | GGAAACTGAATTTGAAGCTT+CGG | - | chr5.4:12908540-12908559 | None:intergenic | 35.0% |
| ! | TTTGTCTATGGGAAGCATAT+TGG | + | chr5.4:12909422-12909441 | MS.gene59417:CDS | 35.0% |
| !! | AGATGATGGGTATCAAATTC+AGG | + | chr5.4:12909355-12909374 | MS.gene59417:intron | 35.0% |
| !! | GATGATGGGTATCAAATTCA+GGG | + | chr5.4:12909356-12909375 | MS.gene59417:intron | 35.0% |
| !! | GATTGCGTTTTGAACAAAAG+CGG | - | chr5.4:12908561-12908580 | None:intergenic | 35.0% |
| GCAATAGGATTTGGAGAAGA+TGG | - | chr5.4:12908600-12908619 | None:intergenic | 40.0% | |
| GGTGTTCTTCTGGATTTGAT+TGG | + | chr5.4:12909377-12909396 | MS.gene59417:CDS | 40.0% | |
| GGTTCCGTTCTCAAACAATA+AGG | - | chr5.4:12908519-12908538 | None:intergenic | 40.0% | |
| GTGGAAAGTGAGAGAAGATA+GGG | + | chr5.4:12909896-12909915 | MS.gene59417:intron | 40.0% | |
| TCCCACAAGTGTTTGTCTAT+GGG | + | chr5.4:12909411-12909430 | MS.gene59417:CDS | 40.0% | |
| TCCCATAGACAAACACTTGT+GGG | - | chr5.4:12909415-12909434 | None:intergenic | 40.0% | |
| TTCCCATAGACAAACACTTG+TGG | - | chr5.4:12909416-12909435 | None:intergenic | 40.0% | |
| ! | AAGCATATTGGTGGATCAGA+TGG | + | chr5.4:12909434-12909453 | MS.gene59417:CDS | 40.0% |
| ! | TCAAATTCAGGGTGTTCTTC+TGG | + | chr5.4:12909367-12909386 | MS.gene59417:CDS | 40.0% |
| ACTGCTTTCATGGTCTGTCA+TGG | + | chr5.4:12909167-12909186 | MS.gene59417:intron | 45.0% | |
| AGGGATGCATGTTTGAGAGA+GGG | - | chr5.4:12909856-12909875 | None:intergenic | 45.0% | |
| GGAGAAGATGGTGATTCTGT+TGG | - | chr5.4:12908588-12908607 | None:intergenic | 45.0% | |
| GGTGGAAAGTGAGAGAAGAT+AGG | + | chr5.4:12909895-12909914 | MS.gene59417:intron | 45.0% | |
| GTCCCACAAGTGTTTGTCTA+TGG | + | chr5.4:12909410-12909429 | MS.gene59417:CDS | 45.0% | |
| GTTTCTGCAATTCACCACTC+TGG | - | chr5.4:12910238-12910257 | None:intergenic | 45.0% | |
| TACGTACGGGCAATAGGATT+TGG | - | chr5.4:12908609-12908628 | None:intergenic | 45.0% | |
| ! | GTCTATGGGAAGCATATTGG+TGG | + | chr5.4:12909425-12909444 | MS.gene59417:CDS | 45.0% |
| !! | GTTGTTGAGCTTGATTTGCG+AGG | + | chr5.4:12908764-12908783 | MS.gene59417:CDS | 45.0% |
| GAGGGATGCATGTTTGAGAG+AGG | - | chr5.4:12909857-12909876 | None:intergenic | 50.0% | |
| CTCAGTGCTGCAGTCCAGAG+TGG | + | chr5.4:12910221-12910240 | MS.gene59417:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 12908467 | 12910274 | 12908467 | ID=MS.gene59417 |
| chr5.4 | mRNA | 12908467 | 12910274 | 12908467 | ID=MS.gene59417.t1;Parent=MS.gene59417 |
| chr5.4 | exon | 12908467 | 12908621 | 12908467 | ID=MS.gene59417.t1.exon1;Parent=MS.gene59417.t1 |
| chr5.4 | CDS | 12908467 | 12908621 | 12908467 | ID=cds.MS.gene59417.t1;Parent=MS.gene59417.t1 |
| chr5.4 | exon | 12908712 | 12908785 | 12908712 | ID=MS.gene59417.t1.exon2;Parent=MS.gene59417.t1 |
| chr5.4 | CDS | 12908712 | 12908785 | 12908712 | ID=cds.MS.gene59417.t1;Parent=MS.gene59417.t1 |
| chr5.4 | exon | 12909357 | 12909455 | 12909357 | ID=MS.gene59417.t1.exon3;Parent=MS.gene59417.t1 |
| chr5.4 | CDS | 12909357 | 12909455 | 12909357 | ID=cds.MS.gene59417.t1;Parent=MS.gene59417.t1 |
| chr5.4 | exon | 12910219 | 12910274 | 12910219 | ID=MS.gene59417.t1.exon4;Parent=MS.gene59417.t1 |
| chr5.4 | CDS | 12910219 | 12910274 | 12910219 | ID=cds.MS.gene59417.t1;Parent=MS.gene59417.t1 |
| Gene Sequence |
| Protein sequence |
