Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59469.t1 | XP_003612170.2 | 86.4 | 434 | 51 | 4 | 1 | 431 | 11 | 439 | 3.70E-133 | 485 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59469.t1 | Q05753 | 44.1 | 281 | 144 | 6 | 13 | 284 | 7 | 283 | 1.0e-54 | 215.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59469.t1 | G7JW80 | 86.4 | 434 | 51 | 4 | 1 | 431 | 1 | 429 | 2.7e-133 | 485.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene59469 | 0.81299 | 3.21E-51 | -1.69E-46 |
| MS.gene049171 | MS.gene59469 | 0.837174 | 6.07E-57 | -1.69E-46 |
| MS.gene049173 | MS.gene59469 | 0.814486 | 1.50E-51 | -1.69E-46 |
| MS.gene049217 | MS.gene59469 | 0.841137 | 5.70E-58 | -1.69E-46 |
| MS.gene049222 | MS.gene59469 | 0.850748 | 1.39E-60 | -1.69E-46 |
| MS.gene049285 | MS.gene59469 | 0.838071 | 3.58E-57 | -1.69E-46 |
| MS.gene049320 | MS.gene59469 | 0.817639 | 2.97E-52 | -1.69E-46 |
| MS.gene049633 | MS.gene59469 | 0.80619 | 9.28E-50 | -1.69E-46 |
| MS.gene049805 | MS.gene59469 | 0.800183 | 1.62E-48 | -1.69E-46 |
| MS.gene050163 | MS.gene59469 | 0.843285 | 1.54E-58 | -1.69E-46 |
| MS.gene050165 | MS.gene59469 | 0.846444 | 2.16E-59 | -1.69E-46 |
| MS.gene050333 | MS.gene59469 | 0.837431 | 5.22E-57 | -1.69E-46 |
| MS.gene050444 | MS.gene59469 | 0.870547 | 1.34E-66 | -1.69E-46 |
| MS.gene050504 | MS.gene59469 | 0.823824 | 1.13E-53 | -1.69E-46 |
| MS.gene050518 | MS.gene59469 | 0.815883 | 7.36E-52 | -1.69E-46 |
| MS.gene050612 | MS.gene59469 | 0.82932 | 5.50E-55 | -1.69E-46 |
| MS.gene050675 | MS.gene59469 | 0.822227 | 2.65E-53 | -1.69E-46 |
| MS.gene050772 | MS.gene59469 | 0.814422 | 1.55E-51 | -1.69E-46 |
| MS.gene05079 | MS.gene59469 | -0.813911 | 2.01E-51 | -1.69E-46 |
| MS.gene05080 | MS.gene59469 | 0.818041 | 2.41E-52 | -1.69E-46 |
| MS.gene050904 | MS.gene59469 | 0.82152 | 3.87E-53 | -1.69E-46 |
| MS.gene05100 | MS.gene59469 | 0.826728 | 2.31E-54 | -1.69E-46 |
| MS.gene051228 | MS.gene59469 | 0.827438 | 1.56E-54 | -1.69E-46 |
| MS.gene051666 | MS.gene59469 | 0.85761 | 1.45E-62 | -1.69E-46 |
| MS.gene051810 | MS.gene59469 | 0.808974 | 2.38E-50 | -1.69E-46 |
| MS.gene051858 | MS.gene59469 | 0.838119 | 3.47E-57 | -1.69E-46 |
| MS.gene051874 | MS.gene59469 | 0.812289 | 4.57E-51 | -1.69E-46 |
| MS.gene051949 | MS.gene59469 | 0.859986 | 2.83E-63 | -1.69E-46 |
| MS.gene052129 | MS.gene59469 | -0.813298 | 2.75E-51 | -1.69E-46 |
| MS.gene052164 | MS.gene59469 | 0.810319 | 1.22E-50 | -1.69E-46 |
| MS.gene052271 | MS.gene59469 | 0.806822 | 6.82E-50 | -1.69E-46 |
| MS.gene052379 | MS.gene59469 | 0.830562 | 2.74E-55 | -1.69E-46 |
| MS.gene052870 | MS.gene59469 | 0.851707 | 7.45E-61 | -1.69E-46 |
| MS.gene052872 | MS.gene59469 | 0.851275 | 9.87E-61 | -1.69E-46 |
| MS.gene053009 | MS.gene59469 | 0.817628 | 2.99E-52 | -1.69E-46 |
| MS.gene053103 | MS.gene59469 | 0.804967 | 1.68E-49 | -1.69E-46 |
| MS.gene053104 | MS.gene59469 | 0.826537 | 2.57E-54 | -1.69E-46 |
| MS.gene053284 | MS.gene59469 | 0.801929 | 7.14E-49 | -1.69E-46 |
| MS.gene053285 | MS.gene59469 | 0.802594 | 5.21E-49 | -1.69E-46 |
| MS.gene053322 | MS.gene59469 | 0.802738 | 4.87E-49 | -1.69E-46 |
| MS.gene053632 | MS.gene59469 | 0.841787 | 3.84E-58 | -1.69E-46 |
| MS.gene053824 | MS.gene59469 | 0.81967 | 1.03E-52 | -1.69E-46 |
| MS.gene053916 | MS.gene59469 | 0.852633 | 4.06E-61 | -1.69E-46 |
| MS.gene054290 | MS.gene59469 | -0.805957 | 1.04E-49 | -1.69E-46 |
| MS.gene054600 | MS.gene59469 | 0.800154 | 1.65E-48 | -1.69E-46 |
| MS.gene054642 | MS.gene59469 | 0.835603 | 1.52E-56 | -1.69E-46 |
| MS.gene05470 | MS.gene59469 | 0.814836 | 1.26E-51 | -1.69E-46 |
| MS.gene054954 | MS.gene59469 | 0.81276 | 3.61E-51 | -1.69E-46 |
| MS.gene055206 | MS.gene59469 | 0.832135 | 1.12E-55 | -1.69E-46 |
| MS.gene055362 | MS.gene59469 | 0.818191 | 2.23E-52 | -1.69E-46 |
| MS.gene055397 | MS.gene59469 | 0.818871 | 1.56E-52 | -1.69E-46 |
| MS.gene055502 | MS.gene59469 | 0.828407 | 9.15E-55 | -1.69E-46 |
| MS.gene055577 | MS.gene59469 | 0.839669 | 1.38E-57 | -1.69E-46 |
| MS.gene055748 | MS.gene59469 | 0.850144 | 2.05E-60 | -1.69E-46 |
| MS.gene055750 | MS.gene59469 | 0.821512 | 3.88E-53 | -1.69E-46 |
| MS.gene055751 | MS.gene59469 | 0.848123 | 7.49E-60 | -1.69E-46 |
| MS.gene05589 | MS.gene59469 | 0.805895 | 1.07E-49 | -1.69E-46 |
| MS.gene055941 | MS.gene59469 | 0.843137 | 1.69E-58 | -1.69E-46 |
| MS.gene056283 | MS.gene59469 | 0.801244 | 9.87E-49 | -1.69E-46 |
| MS.gene056449 | MS.gene59469 | 0.826919 | 2.08E-54 | -1.69E-46 |
| MS.gene056504 | MS.gene59469 | 0.806838 | 6.77E-50 | -1.69E-46 |
| MS.gene056549 | MS.gene59469 | 0.808319 | 3.28E-50 | -1.69E-46 |
| MS.gene056657 | MS.gene59469 | 0.828033 | 1.13E-54 | -1.69E-46 |
| MS.gene056692 | MS.gene59469 | 0.807552 | 4.78E-50 | -1.69E-46 |
| MS.gene056856 | MS.gene59469 | -0.811171 | 8.00E-51 | -1.69E-46 |
| MS.gene056903 | MS.gene59469 | 0.863098 | 3.17E-64 | -1.69E-46 |
| MS.gene057129 | MS.gene59469 | 0.806582 | 7.67E-50 | -1.69E-46 |
| MS.gene057246 | MS.gene59469 | 0.813296 | 2.75E-51 | -1.69E-46 |
| MS.gene057416 | MS.gene59469 | 0.801939 | 7.11E-49 | -1.69E-46 |
| MS.gene057658 | MS.gene59469 | 0.822718 | 2.04E-53 | -1.69E-46 |
| MS.gene057831 | MS.gene59469 | 0.825742 | 3.97E-54 | -1.69E-46 |
| MS.gene057926 | MS.gene59469 | 0.805032 | 1.62E-49 | -1.69E-46 |
| MS.gene058019 | MS.gene59469 | 0.805122 | 1.55E-49 | -1.69E-46 |
| MS.gene058419 | MS.gene59469 | 0.844582 | 6.91E-59 | -1.69E-46 |
| MS.gene058723 | MS.gene59469 | 0.836148 | 1.11E-56 | -1.69E-46 |
| MS.gene058773 | MS.gene59469 | 0.827332 | 1.66E-54 | -1.69E-46 |
| MS.gene058838 | MS.gene59469 | 0.831259 | 1.85E-55 | -1.69E-46 |
| MS.gene059022 | MS.gene59469 | 0.812978 | 3.23E-51 | -1.69E-46 |
| MS.gene059023 | MS.gene59469 | 0.84005 | 1.10E-57 | -1.69E-46 |
| MS.gene059029 | MS.gene59469 | 0.817472 | 3.24E-52 | -1.69E-46 |
| MS.gene059079 | MS.gene59469 | 0.827488 | 1.52E-54 | -1.69E-46 |
| MS.gene05912 | MS.gene59469 | 0.82856 | 8.40E-55 | -1.69E-46 |
| MS.gene05913 | MS.gene59469 | 0.836804 | 7.55E-57 | -1.69E-46 |
| MS.gene05914 | MS.gene59469 | 0.804746 | 1.86E-49 | -1.69E-46 |
| MS.gene05934 | MS.gene59469 | 0.830575 | 2.72E-55 | -1.69E-46 |
| MS.gene059526 | MS.gene59469 | -0.801366 | 9.31E-49 | -1.69E-46 |
| MS.gene059536 | MS.gene59469 | 0.804658 | 1.94E-49 | -1.69E-46 |
| MS.gene059677 | MS.gene59469 | 0.843322 | 1.50E-58 | -1.69E-46 |
| MS.gene059718 | MS.gene59469 | 0.831127 | 1.99E-55 | -1.69E-46 |
| MS.gene059801 | MS.gene59469 | 0.800119 | 1.67E-48 | -1.69E-46 |
| MS.gene059902 | MS.gene59469 | 0.828855 | 7.13E-55 | -1.69E-46 |
| MS.gene059960 | MS.gene59469 | 0.828855 | 7.13E-55 | -1.69E-46 |
| MS.gene060762 | MS.gene59469 | 0.857725 | 1.34E-62 | -1.69E-46 |
| MS.gene060804 | MS.gene59469 | 0.805983 | 1.03E-49 | -1.69E-46 |
| MS.gene060818 | MS.gene59469 | 0.810968 | 8.85E-51 | -1.69E-46 |
| MS.gene06092 | MS.gene59469 | 0.803997 | 2.67E-49 | -1.69E-46 |
| MS.gene061041 | MS.gene59469 | 0.831394 | 1.71E-55 | -1.69E-46 |
| MS.gene061150 | MS.gene59469 | 0.83183 | 1.34E-55 | -1.69E-46 |
| MS.gene061200 | MS.gene59469 | 0.815988 | 6.97E-52 | -1.69E-46 |
| MS.gene061231 | MS.gene59469 | 0.80023 | 1.59E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59469.t1 | MTR_5g022050 | 92.627 | 434 | 24 | 4 | 1 | 431 | 1 | 429 | 0.0 | 768 |
| MS.gene59469.t1 | MTR_5g023090 | 75.217 | 460 | 67 | 8 | 1 | 420 | 1 | 453 | 0.0 | 634 |
| MS.gene59469.t1 | MTR_5g022050 | 91.967 | 361 | 21 | 4 | 1 | 358 | 11 | 366 | 0.0 | 624 |
| MS.gene59469.t1 | MTR_2g048680 | 46.154 | 182 | 97 | 1 | 237 | 417 | 123 | 304 | 9.15e-52 | 176 |
| MS.gene59469.t1 | MTR_2g048680 | 47.853 | 163 | 85 | 0 | 255 | 417 | 62 | 224 | 2.08e-49 | 167 |
| MS.gene59469.t1 | MTR_5g043640 | 33.824 | 136 | 90 | 0 | 262 | 397 | 91 | 226 | 3.31e-17 | 81.3 |
| MS.gene59469.t1 | MTR_5g043640 | 33.088 | 136 | 88 | 1 | 265 | 397 | 58 | 193 | 1.29e-15 | 76.6 |
| MS.gene59469.t1 | MTR_5g026800 | 31.387 | 137 | 93 | 1 | 265 | 400 | 15 | 151 | 4.23e-14 | 72.4 |
| MS.gene59469.t1 | MTR_4g092760 | 29.240 | 171 | 113 | 3 | 237 | 406 | 40 | 203 | 3.78e-12 | 68.6 |
| MS.gene59469.t1 | MTR_6g027840 | 28.649 | 185 | 130 | 2 | 246 | 429 | 195 | 378 | 7.03e-12 | 67.8 |
| MS.gene59469.t1 | MTR_4g113530 | 33.088 | 136 | 88 | 2 | 265 | 399 | 555 | 688 | 1.12e-11 | 67.4 |
| MS.gene59469.t1 | MTR_5g077770 | 35.714 | 154 | 93 | 2 | 264 | 417 | 591 | 738 | 1.13e-11 | 67.4 |
| MS.gene59469.t1 | MTR_7g020860 | 38.095 | 84 | 52 | 0 | 326 | 409 | 739 | 822 | 1.23e-11 | 67.4 |
| MS.gene59469.t1 | MTR_7g115280 | 27.632 | 152 | 108 | 2 | 253 | 404 | 114 | 263 | 3.39e-11 | 65.5 |
| MS.gene59469.t1 | MTR_3g491870 | 33.000 | 100 | 65 | 1 | 303 | 400 | 244 | 343 | 4.90e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59469.t1 | AT5G66055 | 52.482 | 423 | 187 | 7 | 13 | 425 | 7 | 425 | 2.52e-149 | 431 |
| MS.gene59469.t1 | AT5G66055 | 49.300 | 357 | 168 | 6 | 13 | 360 | 7 | 359 | 7.05e-113 | 335 |
| MS.gene59469.t1 | AT5G40160 | 47.802 | 182 | 94 | 1 | 237 | 417 | 127 | 308 | 1.05e-52 | 179 |
| MS.gene59469.t1 | AT5G40160 | 47.436 | 156 | 81 | 1 | 237 | 391 | 127 | 282 | 1.32e-43 | 154 |
| MS.gene59469.t1 | AT2G25600 | 32.857 | 140 | 92 | 1 | 265 | 404 | 581 | 718 | 8.71e-13 | 70.9 |
| MS.gene59469.t1 | AT4G27780 | 40.506 | 79 | 47 | 0 | 322 | 400 | 261 | 339 | 1.21e-12 | 69.3 |
| MS.gene59469.t1 | AT5G53470 | 32.673 | 101 | 66 | 1 | 302 | 400 | 224 | 324 | 1.26e-11 | 66.2 |
| MS.gene59469.t1 | AT2G03430 | 29.710 | 138 | 97 | 0 | 260 | 397 | 82 | 219 | 1.49e-11 | 64.7 |
| MS.gene59469.t1 | AT2G03430 | 29.341 | 167 | 112 | 2 | 234 | 397 | 23 | 186 | 4.17e-11 | 63.2 |
| MS.gene59469.t1 | AT4G19150 | 26.087 | 161 | 114 | 2 | 265 | 424 | 20 | 176 | 2.09e-11 | 64.3 |
| MS.gene59469.t1 | AT2G14255 | 31.333 | 150 | 100 | 2 | 253 | 399 | 83 | 232 | 2.21e-11 | 66.2 |
| MS.gene59469.t1 | AT5G13300 | 33.663 | 101 | 65 | 1 | 316 | 416 | 718 | 816 | 3.21e-11 | 65.9 |
Find 82 sgRNAs with CRISPR-Local
Find 277 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCATTATTTGTAGGATAAA+TGG | 0.153410 | 5.4:+13681928 | MS.gene59469:intron |
| TTCTTCTTTGAAATTGAAAT+TGG | 0.200442 | 5.4:-13680042 | None:intergenic |
| AATCCTAGATGGGCTGTTTA+TGG | 0.219355 | 5.4:+13680372 | MS.gene59469:CDS |
| CAGTTGAAGCCTTTGGTTCT+TGG | 0.229120 | 5.4:+13680273 | MS.gene59469:CDS |
| AGAATCTTGTTCCTGATAAA+TGG | 0.230329 | 5.4:+13680088 | MS.gene59469:CDS |
| GTTGATTCCTTTGAGGGATA+TGG | 0.236009 | 5.4:+13680209 | MS.gene59469:CDS |
| TGAACTTCTTTCCATTTATC+AGG | 0.246691 | 5.4:-13680099 | None:intergenic |
| GCTCTTTACAAAGCGGTAAT+TGG | 0.258042 | 5.4:+13682139 | MS.gene59469:CDS |
| TTTGAAATTGAAATTGGTTT+TGG | 0.269853 | 5.4:-13680036 | None:intergenic |
| GTGAAGCTTCTGCTGATTAA+AGG | 0.274738 | 5.4:+13682952 | MS.gene59469:CDS |
| GGCTTATAAAGAAGCTAAAT+TGG | 0.277637 | 5.4:+13680248 | MS.gene59469:CDS |
| TATGGATTTGAATGAGTATA+AGG | 0.293852 | 5.4:+13680227 | MS.gene59469:CDS |
| GTCTGTCGGGAGCGTCTATA+AGG | 0.356780 | 5.4:-13684213 | None:intergenic |
| GACTGTGCTGCTATGAAAAC+TGG | 0.364838 | 5.4:+13680441 | MS.gene59469:CDS |
| ATTGGCTCAGTTGAAGCCTT+TGG | 0.368198 | 5.4:+13680266 | MS.gene59469:CDS |
| TGATGTTGATATTAATGTTA+TGG | 0.368619 | 5.4:+13682013 | MS.gene59469:CDS |
| CAATGTGGATATAAATCTTC+AGG | 0.373575 | 5.4:+13682782 | MS.gene59469:CDS |
| AAGAAGAGTGTGTGGGGTTG+TGG | 0.374765 | 5.4:-13679796 | None:intergenic |
| TGATATTAATGTTATGGATA+AGG | 0.387981 | 5.4:+13682019 | MS.gene59469:CDS |
| ATCCTAGATGGGCTGTTTAT+GGG | 0.393025 | 5.4:+13680373 | MS.gene59469:CDS |
| TCTCAAGAGACAGTTGGTTA+TGG | 0.396572 | 5.4:-13682173 | None:intergenic |
| TAGTGCCTAGGAATCCTAGA+TGG | 0.397952 | 5.4:+13680361 | MS.gene59469:CDS |
| ACAAGAGTACTTTAATTGTT+CGG | 0.397986 | 5.4:-13682755 | None:intergenic |
| CTCACATTATCTTGCACAAA+CGG | 0.408366 | 5.4:-13682208 | None:intergenic |
| GAAGCCTTTGGTTCTTGGTA+AGG | 0.419470 | 5.4:+13680278 | MS.gene59469:CDS |
| AGATGGGCTGTTTATGGGAG+AGG | 0.423749 | 5.4:+13680378 | MS.gene59469:CDS |
| TTCTTCTTATCCCCGTCTGT+CGG | 0.435105 | 5.4:-13684227 | None:intergenic |
| TTGCTGTGTCTTAGGATGGC+TGG | 0.440960 | 5.4:+13682887 | MS.gene59469:intron |
| AAGAGGGTTGATTCCTTTGA+GGG | 0.442733 | 5.4:+13680203 | MS.gene59469:CDS |
| CGGAGACTGTCTTGTCTTCG+AGG | 0.443191 | 5.4:+13679951 | MS.gene59469:CDS |
| AAAGAGGGTTGATTCCTTTG+AGG | 0.450936 | 5.4:+13680202 | MS.gene59469:CDS |
| TCTTCTTATCCCCGTCTGTC+GGG | 0.451834 | 5.4:-13684226 | None:intergenic |
| GTCGTCCTAGGTTGTTTACC+AGG | 0.463875 | 5.4:+13681575 | MS.gene59469:CDS |
| ACGAGGTTGTTGTCGGAAGT+TGG | 0.464298 | 5.4:-13680000 | None:intergenic |
| AAAGTTATGAAGAAGAAAAG+AGG | 0.482187 | 5.4:+13680186 | MS.gene59469:CDS |
| ACAGCCCATCTAGGATTCCT+AGG | 0.499470 | 5.4:-13680366 | None:intergenic |
| TTTATCAGGAACAAGATTCT+CGG | 0.500203 | 5.4:-13680085 | None:intergenic |
| GTTGTTTACGAGGTTGTTGT+CGG | 0.500244 | 5.4:-13680007 | None:intergenic |
| CTCGACCTTTGCCTTTACTC+TGG | 0.500612 | 5.4:+13684147 | MS.gene59469:CDS |
| CTCCCATAAACAGCCCATCT+AGG | 0.507590 | 5.4:-13680375 | None:intergenic |
| GTTGTTTACCAGGGAGGAGA+GGG | 0.513400 | 5.4:+13681585 | MS.gene59469:CDS |
| CTTCGTAGTTGTTGTCATGT+TGG | 0.515970 | 5.4:-13679918 | None:intergenic |
| GATGATGAAGAAGAAGAAGA+AGG | 0.516113 | 5.4:+13680318 | MS.gene59469:CDS |
| AAGTTATGAAGAAGAAAAGA+GGG | 0.517219 | 5.4:+13680187 | MS.gene59469:CDS |
| AGGTGGGTTGAGTGATGAGA+GGG | 0.518172 | 5.4:+13680338 | MS.gene59469:CDS |
| GAAGTAGCAACTGACAAGTC+TGG | 0.525281 | 5.4:-13681628 | None:intergenic |
| ATGGAGAGAAGAAGAGTGTG+TGG | 0.526930 | 5.4:-13679804 | None:intergenic |
| TGGAGAGAAGAAGAGTGTGT+GGG | 0.527588 | 5.4:-13679803 | None:intergenic |
| GACTGTCTTGTCTTCGAGGA+AGG | 0.528284 | 5.4:+13679955 | MS.gene59469:CDS |
| TGTTTATGGGAGAGGTTTCG+AGG | 0.529560 | 5.4:+13680386 | MS.gene59469:CDS |
| CGAGTTTCTCAAGAGACAGT+TGG | 0.545416 | 5.4:-13682179 | None:intergenic |
| TATAGACGCTCCCGACAGAC+GGG | 0.545707 | 5.4:+13684216 | MS.gene59469:CDS |
| CAACAAATCCCTCTCCTCCC+TGG | 0.550164 | 5.4:-13681593 | None:intergenic |
| GTCTGAACAGCAAGATGTAA+TGG | 0.552014 | 5.4:-13682913 | None:intergenic |
| AAGGTGGGTTGAGTGATGAG+AGG | 0.562680 | 5.4:+13680337 | MS.gene59469:CDS |
| GGTGTGGAAGAAGAAGAAGA+AGG | 0.570732 | 5.4:-13679829 | None:intergenic |
| GAGTAAAGGCAAAGGTCGAG+TGG | 0.584489 | 5.4:-13684144 | None:intergenic |
| TTCAAATCCATATCCCTCAA+AGG | 0.588549 | 5.4:-13680216 | None:intergenic |
| TTGTACAGCATAGTGAATCA+AGG | 0.589301 | 5.4:-13682721 | None:intergenic |
| AGTGCCTAGGAATCCTAGAT+GGG | 0.592539 | 5.4:+13680362 | MS.gene59469:CDS |
| AGATTGAAACTTGCGAGGTG+TGG | 0.593440 | 5.4:-13679845 | None:intergenic |
| AATTACCGCTTTGTAAAGAG+CGG | 0.596818 | 5.4:-13682137 | None:intergenic |
| TTATAGACGCTCCCGACAGA+CGG | 0.598131 | 5.4:+13684215 | MS.gene59469:CDS |
| GGTTGTTTACCAGGGAGGAG+AGG | 0.600499 | 5.4:+13681584 | MS.gene59469:CDS |
| TCGTCCTAGGTTGTTTACCA+GGG | 0.600545 | 5.4:+13681576 | MS.gene59469:CDS |
| AGTACTCTTGTTGTACAATG+TGG | 0.602365 | 5.4:+13682767 | MS.gene59469:CDS |
| TAAACATAACGAAGAAAGAA+CGG | 0.615305 | 5.4:+13680130 | MS.gene59469:CDS |
| GTGATGAGAGGGTAGTGCCT+AGG | 0.618143 | 5.4:+13680349 | MS.gene59469:CDS |
| TGAAAAGATTGAAACTTGCG+AGG | 0.619228 | 5.4:-13679850 | None:intergenic |
| CTTGCAGCAAAAGTGTGCAA+AGG | 0.619949 | 5.4:-13681954 | None:intergenic |
| CAACTGTCTCTTGAGAAACT+CGG | 0.635724 | 5.4:+13682180 | MS.gene59469:CDS |
| TCCTAGGTTGTTTACCAGGG+AGG | 0.641807 | 5.4:+13681579 | MS.gene59469:CDS |
| GGAGAGAAGAAGAGTGTGTG+GGG | 0.642297 | 5.4:-13679802 | None:intergenic |
| AACTACGAAGAACACATCAT+CGG | 0.651971 | 5.4:+13679931 | MS.gene59469:CDS |
| TCCTCCCTGGTAAACAACCT+AGG | 0.653160 | 5.4:-13681580 | None:intergenic |
| AAAACCTTACCAAGAACCAA+AGG | 0.660134 | 5.4:-13680282 | None:intergenic |
| TTGTGGATTATGAACAAGTG+TGG | 0.665151 | 5.4:-13679779 | None:intergenic |
| TTTGACCAGAGTAAAGGCAA+AGG | 0.667685 | 5.4:-13684152 | None:intergenic |
| TTTGGCCGCTCTTTACAAAG+CGG | 0.690793 | 5.4:+13682132 | MS.gene59469:CDS |
| ATAGACGCTCCCGACAGACG+GGG | 0.691778 | 5.4:+13684217 | MS.gene59469:CDS |
| TACAGCATAGTGAATCAAGG+TGG | 0.739803 | 5.4:-13682718 | None:intergenic |
| TGTGCTGCTATGAAAACTGG+AGG | 0.759149 | 5.4:+13680444 | MS.gene59469:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTTATAAAATAGAAG+CGG | + | chr5.4:13683318-13683337 | MS.gene59469:intron | 10.0% |
| !! | AACTATATGTTAATAGATTA+AGG | - | chr5.4:13682618-13682637 | None:intergenic | 15.0% |
| !! | ACTATATGTTAATAGATTAA+GGG | - | chr5.4:13682617-13682636 | None:intergenic | 15.0% |
| !! | ATAATTTATAAAATAGAAGC+GGG | + | chr5.4:13683319-13683338 | MS.gene59469:intron | 15.0% |
| !! | TTACATTGATAGATTAATAT+AGG | - | chr5.4:13683021-13683040 | None:intergenic | 15.0% |
| !! | AAAAAAGGGAAAAAATACAA+TGG | - | chr5.4:13683144-13683163 | None:intergenic | 20.0% |
| !! | AAAAAGGGAAAAAATACAAT+GGG | - | chr5.4:13683143-13683162 | None:intergenic | 20.0% |
| !! | AAAACTAAAAGTTGTTACAT+AGG | - | chr5.4:13680532-13680551 | None:intergenic | 20.0% |
| !! | AAACACAATAGTTTAAATAG+AGG | - | chr5.4:13682090-13682109 | None:intergenic | 20.0% |
| !! | AAATATCACTGTAAAAGAAA+TGG | - | chr5.4:13684083-13684102 | None:intergenic | 20.0% |
| !! | AACTAAATATTCATCAATCA+CGG | - | chr5.4:13683895-13683914 | None:intergenic | 20.0% |
| !! | ATGAAAAAGTTGAGATATAA+AGG | + | chr5.4:13681157-13681176 | MS.gene59469:intron | 20.0% |
| !! | CATGAATACTAATTTATACA+CGG | + | chr5.4:13682044-13682063 | MS.gene59469:intron | 20.0% |
| !! | CTAAATCATTAAAAACCTAT+CGG | + | chr5.4:13683647-13683666 | MS.gene59469:intron | 20.0% |
| !! | TAACAGTACAAAATATAATG+AGG | - | chr5.4:13681705-13681724 | None:intergenic | 20.0% |
| !! | TCTTCATAGATTATTGTTTA+GGG | + | chr5.4:13680785-13680804 | MS.gene59469:intron | 20.0% |
| !! | TGATATTAATGTTATGGATA+AGG | + | chr5.4:13682019-13682038 | MS.gene59469:CDS | 20.0% |
| !! | TGATCAGAAATTAAAAAACA+AGG | + | chr5.4:13682978-13682997 | MS.gene59469:CDS | 20.0% |
| !! | TGATGTTGATATTAATGTTA+TGG | + | chr5.4:13682013-13682032 | MS.gene59469:CDS | 20.0% |
| !!! | AAAACTTTCAACTGTTATTT+AGG | + | chr5.4:13683680-13683699 | MS.gene59469:intron | 20.0% |
| !!! | AATTCTTTAGAAAATAGAAG+TGG | + | chr5.4:13683451-13683470 | MS.gene59469:intron | 20.0% |
| !!! | ATATCATAATATTTTGTCTG+TGG | + | chr5.4:13683978-13683997 | MS.gene59469:intron | 20.0% |
| !!! | ATGGACATTTTGAAAAATAA+GGG | + | chr5.4:13681024-13681043 | MS.gene59469:intron | 20.0% |
| !!! | ATTATATTTTGTACTGTTAC+CGG | + | chr5.4:13681706-13681725 | MS.gene59469:intron | 20.0% |
| !!! | CTCTATATTTATGTTTTCAA+TGG | + | chr5.4:13681899-13681918 | MS.gene59469:intron | 20.0% |
| !!! | TATGGACATTTTGAAAAATA+AGG | + | chr5.4:13681023-13681042 | MS.gene59469:intron | 20.0% |
| !!! | TGTTGGTTAAAACAAATTTA+TGG | + | chr5.4:13681079-13681098 | MS.gene59469:intron | 20.0% |
| !!! | TGTTTTGTTTTACTTTTTCA+AGG | + | chr5.4:13682105-13682124 | MS.gene59469:intron | 20.0% |
| !!! | TTATATCTCAACTTTTTCAT+AGG | - | chr5.4:13681157-13681176 | None:intergenic | 20.0% |
| !!! | TTCTTCTTTGAAATTGAAAT+TGG | - | chr5.4:13680045-13680064 | None:intergenic | 20.0% |
| !!! | TTTGAAATTGAAATTGGTTT+TGG | - | chr5.4:13680039-13680058 | None:intergenic | 20.0% |
| !!! | TTTGTATTTACAATCTGTTT+TGG | + | chr5.4:13680470-13680489 | MS.gene59469:intron | 20.0% |
| ! | AAAGTTATGAAGAAGAAAAG+AGG | + | chr5.4:13680186-13680205 | MS.gene59469:CDS | 25.0% |
| ! | AAGTTATGAAGAAGAAAAGA+GGG | + | chr5.4:13680187-13680206 | MS.gene59469:CDS | 25.0% |
| ! | AATATGCTGAAAACAACTTA+TGG | + | chr5.4:13682499-13682518 | MS.gene59469:intron | 25.0% |
| ! | ATCAGCCTTTCAAAAAAAAA+AGG | + | chr5.4:13683210-13683229 | MS.gene59469:intron | 25.0% |
| ! | CTCATTATTTGTAGGATAAA+TGG | + | chr5.4:13681928-13681947 | MS.gene59469:intron | 25.0% |
| ! | CTCTTCATAGATTATTGTTT+AGG | + | chr5.4:13680784-13680803 | MS.gene59469:intron | 25.0% |
| ! | GAAATTTGATTGTGATGAAA+TGG | + | chr5.4:13681422-13681441 | MS.gene59469:intron | 25.0% |
| ! | GTAAGAAAATCAACAGATAA+AGG | - | chr5.4:13682279-13682298 | None:intergenic | 25.0% |
| ! | TAAACATAACGAAGAAAGAA+CGG | + | chr5.4:13680130-13680149 | MS.gene59469:CDS | 25.0% |
| ! | TATGGATTTGAATGAGTATA+AGG | + | chr5.4:13680227-13680246 | MS.gene59469:CDS | 25.0% |
| ! | TCAGCCTTTCAAAAAAAAAA+GGG | + | chr5.4:13683211-13683230 | MS.gene59469:intron | 25.0% |
| ! | TTACTTCAACATCAAAACAA+AGG | - | chr5.4:13681754-13681773 | None:intergenic | 25.0% |
| ! | TTCAAAAAAAAAAGGGTCAT+TGG | + | chr5.4:13683218-13683237 | MS.gene59469:intron | 25.0% |
| ! | TTCTCATTGTTTGCAATATA+TGG | + | chr5.4:13681502-13681521 | MS.gene59469:intron | 25.0% |
| !! | ACATGTATTCTTTAGAAAAC+AGG | + | chr5.4:13683515-13683534 | MS.gene59469:intron | 25.0% |
| !! | CGATAGGTTTTTAATGATTT+AGG | - | chr5.4:13683649-13683668 | None:intergenic | 25.0% |
| !! | TATTCATTGATGGTTAAATC+CGG | + | chr5.4:13681452-13681471 | MS.gene59469:intron | 25.0% |
| !! | TGAATATAGATGCTTTTAAC+TGG | + | chr5.4:13683070-13683089 | MS.gene59469:intron | 25.0% |
| !! | TGAATATAGGTGCTTTTAAT+GGG | + | chr5.4:13683343-13683362 | MS.gene59469:intron | 25.0% |
| !! | TGGATCATTTTATTCATTGA+TGG | + | chr5.4:13681442-13681461 | MS.gene59469:intron | 25.0% |
| !!! | ACAAGAGTACTTTAATTGTT+CGG | - | chr5.4:13682758-13682777 | None:intergenic | 25.0% |
| !!! | ATGACCCTTTTTTTTTTGAA+AGG | - | chr5.4:13683218-13683237 | None:intergenic | 25.0% |
| !!! | TACTTTTAGAATCTTTGTTG+CGG | + | chr5.4:13681988-13682007 | MS.gene59469:CDS | 25.0% |
| !!! | TATGCTTGTTAGATAACTTT+TGG | + | chr5.4:13680948-13680967 | MS.gene59469:intron | 25.0% |
| !!! | TATTTTTGTTAATGCTGTTG+AGG | + | chr5.4:13680496-13680515 | MS.gene59469:intron | 25.0% |
| !!! | TGGATTTGCTTTTGATTTAT+GGG | + | chr5.4:13681052-13681071 | MS.gene59469:intron | 25.0% |
| !!! | TGTTGCATTTTTTTCAATGT+TGG | + | chr5.4:13681816-13681835 | MS.gene59469:intron | 25.0% |
| !!! | TTGGATTTGCTTTTGATTTA+TGG | + | chr5.4:13681051-13681070 | MS.gene59469:intron | 25.0% |
| !!! | TTGTTTTACTTTTTCAAGGA+TGG | + | chr5.4:13682109-13682128 | MS.gene59469:intron | 25.0% |
| AAAAAACTCGCGGATAAAAA+AGG | - | chr5.4:13683159-13683178 | None:intergenic | 30.0% | |
| AAAAACTCGCGGATAAAAAA+GGG | - | chr5.4:13683158-13683177 | None:intergenic | 30.0% | |
| AAAGAAGAAAAAGAAGACAG+TGG | + | chr5.4:13680056-13680075 | MS.gene59469:CDS | 30.0% | |
| AAGCAAATGCATAGAATATC+AGG | - | chr5.4:13682668-13682687 | None:intergenic | 30.0% | |
| AGAATCTTGTTCCTGATAAA+TGG | + | chr5.4:13680088-13680107 | MS.gene59469:CDS | 30.0% | |
| AGTTAGGTGATTTAGATGAA+AGG | + | chr5.4:13683570-13683589 | MS.gene59469:intron | 30.0% | |
| ATATAGAGATTACTTACCGA+AGG | - | chr5.4:13681887-13681906 | None:intergenic | 30.0% | |
| ATCCAAAATGGCTCTTAAAT+TGG | + | chr5.4:13681282-13681301 | MS.gene59469:intron | 30.0% | |
| CAATGTGGATATAAATCTTC+AGG | + | chr5.4:13682782-13682801 | MS.gene59469:CDS | 30.0% | |
| GAGGTAGAAAAGCTAATTAT+TGG | - | chr5.4:13682828-13682847 | None:intergenic | 30.0% | |
| GCATAAAATGAATATCTTCC+CGG | - | chr5.4:13681474-13681493 | None:intergenic | 30.0% | |
| GGCTAATACTCATTATTTGT+AGG | + | chr5.4:13681920-13681939 | MS.gene59469:intron | 30.0% | |
| GGCTTATAAAGAAGCTAAAT+TGG | + | chr5.4:13680248-13680267 | MS.gene59469:CDS | 30.0% | |
| TGAACTTCTTTCCATTTATC+AGG | - | chr5.4:13680102-13680121 | None:intergenic | 30.0% | |
| TGACACAATAATCTATGAAG+CGG | - | chr5.4:13680672-13680691 | None:intergenic | 30.0% | |
| TGATAACAATGATGAATTCC+CGG | - | chr5.4:13682335-13682354 | None:intergenic | 30.0% | |
| TTATATCCTTAGTTACCTGT+TGG | + | chr5.4:13682639-13682658 | MS.gene59469:intron | 30.0% | |
| TTGGAGAAGTTTATCCAAAA+TGG | + | chr5.4:13681270-13681289 | MS.gene59469:intron | 30.0% | |
| TTTATCAGGAACAAGATTCT+CGG | - | chr5.4:13680088-13680107 | None:intergenic | 30.0% | |
| TTTCATCTAAATCACCTAAC+TGG | - | chr5.4:13683571-13683590 | None:intergenic | 30.0% | |
| TTTGAAAAATAAGGGTGGTT+TGG | + | chr5.4:13681032-13681051 | MS.gene59469:intron | 30.0% | |
| TTTGTTTATATTGCCATCCT+AGG | - | chr5.4:13681402-13681421 | None:intergenic | 30.0% | |
| ! | ATTCACTTGTTTGTTACCTT+CGG | + | chr5.4:13681868-13681887 | MS.gene59469:intron | 30.0% |
| ! | ATTCATTGATGGTTAAATCC+GGG | + | chr5.4:13681453-13681472 | MS.gene59469:intron | 30.0% |
| ! | CTGAATATAGGTGCTTTTAA+TGG | + | chr5.4:13683342-13683361 | MS.gene59469:intron | 30.0% |
| ! | GAATCATAATAGAAGTGTAG+GGG | + | chr5.4:13681838-13681857 | MS.gene59469:intron | 30.0% |
| ! | GGAATCATAATAGAAGTGTA+GGG | + | chr5.4:13681837-13681856 | MS.gene59469:intron | 30.0% |
| ! | TAATAGATTAAGGGCATGTT+TGG | - | chr5.4:13682608-13682627 | None:intergenic | 30.0% |
| ! | TCTCTTCAGATAAGTGTTTT+TGG | + | chr5.4:13681251-13681270 | MS.gene59469:intron | 30.0% |
| ! | TCTTTCATGCTTTTGTGTAT+AGG | + | chr5.4:13681553-13681572 | MS.gene59469:intron | 30.0% |
| ! | TGAATTTTGTTCTCAAACAG+TGG | - | chr5.4:13682866-13682885 | None:intergenic | 30.0% |
| ! | TGGAATCATAATAGAAGTGT+AGG | + | chr5.4:13681836-13681855 | MS.gene59469:intron | 30.0% |
| !! | AAATTCATTTGCTGTGTCTT+AGG | + | chr5.4:13682879-13682898 | MS.gene59469:intron | 30.0% |
| !! | AGGCTTGATTGAATTTGTTT+TGG | + | chr5.4:13683867-13683886 | MS.gene59469:intron | 30.0% |
| !! | ATTTGTCTTTTGTTTGTCTC+AGG | + | chr5.4:13684110-13684129 | MS.gene59469:intron | 30.0% |
| !! | GACATTTTGAAAAATAAGGG+TGG | + | chr5.4:13681027-13681046 | MS.gene59469:intron | 30.0% |
| !!! | ACTAGAGAGTTCTTATTTTC+CGG | - | chr5.4:13681728-13681747 | None:intergenic | 30.0% |
| !!! | TTACTTTTTCAAGGATGGTT+TGG | + | chr5.4:13682114-13682133 | MS.gene59469:intron | 30.0% |
| !!! | TTGGTTTTTTGTTGTTTACG+AGG | - | chr5.4:13680020-13680039 | None:intergenic | 30.0% |
| AAAACCTTACCAAGAACCAA+AGG | - | chr5.4:13680285-13680304 | None:intergenic | 35.0% | |
| AACTACGAAGAACACATCAT+CGG | + | chr5.4:13679931-13679950 | MS.gene59469:CDS | 35.0% | |
| AATTACCGCTTTGTAAAGAG+CGG | - | chr5.4:13682140-13682159 | None:intergenic | 35.0% | |
| ACAAACATTCATCATGACAC+TGG | + | chr5.4:13683280-13683299 | MS.gene59469:intron | 35.0% | |
| ACACGGAAGATTATAATGTG+TGG | + | chr5.4:13682061-13682080 | MS.gene59469:intron | 35.0% | |
| ACCTTGTGTGTTAGATAATG+TGG | + | chr5.4:13683045-13683064 | MS.gene59469:intron | 35.0% | |
| AGCAGTAAGCAGATTAATAC+TGG | + | chr5.4:13684057-13684076 | MS.gene59469:intron | 35.0% | |
| ATGAAGAAGAAGAAGAAGGT+GGG | + | chr5.4:13680322-13680341 | MS.gene59469:CDS | 35.0% | |
| CAAACACATGTAGTTACGTT+TGG | + | chr5.4:13680597-13680616 | MS.gene59469:intron | 35.0% | |
| CAAGCACATGTAGTTATGTT+TGG | + | chr5.4:13680862-13680881 | MS.gene59469:intron | 35.0% | |
| CACATACATGTAGTTACCTT+TGG | + | chr5.4:13680718-13680737 | MS.gene59469:intron | 35.0% | |
| CCTTGTGTGTTAGATAATGT+GGG | + | chr5.4:13683046-13683065 | MS.gene59469:intron | 35.0% | |
| CGGGGATAAGAAGAAAATAA+TGG | + | chr5.4:13684235-13684254 | MS.gene59469:CDS | 35.0% | |
| CTCACATTATCTTGCACAAA+CGG | - | chr5.4:13682211-13682230 | None:intergenic | 35.0% | |
| GATGATGAAGAAGAAGAAGA+AGG | + | chr5.4:13680318-13680337 | MS.gene59469:CDS | 35.0% | |
| GCTTCATAGATTATTGTGTC+AGG | + | chr5.4:13680671-13680690 | MS.gene59469:intron | 35.0% | |
| GGTAAAATATCAGTTGTCAC+TGG | + | chr5.4:13683371-13683390 | MS.gene59469:intron | 35.0% | |
| GTAGTGAAAATCAACTTCCT+TGG | + | chr5.4:13680992-13681011 | MS.gene59469:intron | 35.0% | |
| GTCAGGTGTATGAAATGTAT+TGG | + | chr5.4:13680688-13680707 | MS.gene59469:intron | 35.0% | |
| GTTGTATATTGCCATCCATT+AGG | - | chr5.4:13681330-13681349 | None:intergenic | 35.0% | |
| TAGAATATCAGGATACCAAC+AGG | - | chr5.4:13682657-13682676 | None:intergenic | 35.0% | |
| TGAAAAGATTGAAACTTGCG+AGG | - | chr5.4:13679853-13679872 | None:intergenic | 35.0% | |
| TTAAATGTAACCTCGTGTGT+TGG | + | chr5.4:13683474-13683493 | MS.gene59469:intron | 35.0% | |
| TTCAAATCCATATCCCTCAA+AGG | - | chr5.4:13680219-13680238 | None:intergenic | 35.0% | |
| TTCAGTAAGTATTCCATGTC+TGG | + | chr5.4:13681648-13681667 | MS.gene59469:intron | 35.0% | |
| TTGTACAGCATAGTGAATCA+AGG | - | chr5.4:13682724-13682743 | None:intergenic | 35.0% | |
| TTGTCGGAAGTTGGAAAAAT+GGG | - | chr5.4:13679994-13680013 | None:intergenic | 35.0% | |
| ! | AATCACCTAACTGGTTCTTA+AGG | - | chr5.4:13683562-13683581 | None:intergenic | 35.0% |
| ! | AGAGAATTTTGTGGAAGTTG+CGG | - | chr5.4:13679888-13679907 | None:intergenic | 35.0% |
| ! | AGTACTCTTGTTGTACAATG+TGG | + | chr5.4:13682767-13682786 | MS.gene59469:CDS | 35.0% |
| ! | CACCAATTTAAGAGCCATTT+TGG | - | chr5.4:13681287-13681306 | None:intergenic | 35.0% |
| ! | CTGTTTTCATAAGCTATCCT+GGG | + | chr5.4:13682466-13682485 | MS.gene59469:intron | 35.0% |
| ! | GTGATGAAGAGAGAATTTTG+TGG | - | chr5.4:13679897-13679916 | None:intergenic | 35.0% |
| ! | GTTTTTCTTCAACAACCGAT+AGG | - | chr5.4:13683665-13683684 | None:intergenic | 35.0% |
| ! | TAATAGAAGTGTAGGGGAAA+AGG | + | chr5.4:13681844-13681863 | MS.gene59469:intron | 35.0% |
| ! | TTCTACCTCTTACTCTTTTG+TGG | + | chr5.4:13682839-13682858 | MS.gene59469:intron | 35.0% |
| ! | TTGTGGATTATGAACAAGTG+TGG | - | chr5.4:13679782-13679801 | None:intergenic | 35.0% |
| ! | TTTGATTTATGGGAGCTTGT+TGG | + | chr5.4:13681062-13681081 | MS.gene59469:intron | 35.0% |
| !! | AGATGCTTTTAACTGGTCAT+TGG | + | chr5.4:13683077-13683096 | MS.gene59469:intron | 35.0% |
| !! | GATGCTTTTAACTGGTCATT+GGG | + | chr5.4:13683078-13683097 | MS.gene59469:intron | 35.0% |
| !! | TGACATTTTGACCAGAGTAA+AGG | - | chr5.4:13684161-13684180 | None:intergenic | 35.0% |
| !! | TTGCTTTGTTGTTTATGTGC+TGG | + | chr5.4:13682682-13682701 | MS.gene59469:intron | 35.0% |
| !!! | AGTTTTAGATTGAACGTGTC+AGG | + | chr5.4:13680546-13680565 | MS.gene59469:intron | 35.0% |
| AACCTTTGGTACCTAATGGA+TGG | + | chr5.4:13681316-13681335 | MS.gene59469:intron | 40.0% | |
| AAGAGATTCACCCATTAACC+AGG | + | chr5.4:13683614-13683633 | MS.gene59469:intron | 40.0% | |
| AATGGGATGCCGCAATTATA+CGG | - | chr5.4:13683126-13683145 | None:intergenic | 40.0% | |
| AGACTGTTCAGAAGAGCTTA+TGG | - | chr5.4:13682544-13682563 | None:intergenic | 40.0% | |
| AGAGATTCACCCATTAACCA+GGG | + | chr5.4:13683615-13683634 | MS.gene59469:intron | 40.0% | |
| AGCAACACAGACACATATAC+CGG | - | chr5.4:13680910-13680929 | None:intergenic | 40.0% | |
| AGGATACCAACAGGTAACTA+AGG | - | chr5.4:13682648-13682667 | None:intergenic | 40.0% | |
| ATGTCCATACATCATCACCA+AGG | - | chr5.4:13681012-13681031 | None:intergenic | 40.0% | |
| ATTGACTAATCAACGCGTCA+CGG | - | chr5.4:13683817-13683836 | None:intergenic | 40.0% | |
| ATTTACCTACGAAGCAACTC+AGG | + | chr5.4:13683395-13683414 | MS.gene59469:intron | 40.0% | |
| CAACTGTCTCTTGAGAAACT+CGG | + | chr5.4:13682180-13682199 | MS.gene59469:CDS | 40.0% | |
| CAATGACACGTAGATACCAA+AGG | - | chr5.4:13680737-13680756 | None:intergenic | 40.0% | |
| CCCACATTATCTAACACACA+AGG | - | chr5.4:13683049-13683068 | None:intergenic | 40.0% | |
| CTATGTGTCAGTGTCATATC+CGG | + | chr5.4:13680888-13680907 | MS.gene59469:intron | 40.0% | |
| CTCTTCCTTAAGAACCAGTT+AGG | + | chr5.4:13683554-13683573 | MS.gene59469:intron | 40.0% | |
| CTTCGTAGTTGTTGTCATGT+TGG | - | chr5.4:13679921-13679940 | None:intergenic | 40.0% | |
| GAAAGACTTCCCTGGTTAAT+GGG | - | chr5.4:13683627-13683646 | None:intergenic | 40.0% | |
| GAAGAAGAAGAAGAAGGGAA+TGG | - | chr5.4:13679826-13679845 | None:intergenic | 40.0% | |
| GATGAAGAAGAAGAAGAAGG+TGG | + | chr5.4:13680321-13680340 | MS.gene59469:CDS | 40.0% | |
| GCTACATAAACAACCTAGGA+TGG | + | chr5.4:13681386-13681405 | MS.gene59469:intron | 40.0% | |
| GCTCTTTACAAAGCGGTAAT+TGG | + | chr5.4:13682139-13682158 | MS.gene59469:CDS | 40.0% | |
| GTCTGAACAGCAAGATGTAA+TGG | - | chr5.4:13682916-13682935 | None:intergenic | 40.0% | |
| GTGTGGAAGAAGAAGAAGAA+GGG | - | chr5.4:13679831-13679850 | None:intergenic | 40.0% | |
| GTTGTCGGAAGTTGGAAAAA+TGG | - | chr5.4:13679995-13680014 | None:intergenic | 40.0% | |
| GTTGTTTACGAGGTTGTTGT+CGG | - | chr5.4:13680010-13680029 | None:intergenic | 40.0% | |
| GTTGTTTATGTGCTGGAAAC+AGG | + | chr5.4:13682689-13682708 | MS.gene59469:intron | 40.0% | |
| TACAGCATAGTGAATCAAGG+TGG | - | chr5.4:13682721-13682740 | None:intergenic | 40.0% | |
| TCACAACCTTTGGTACCTAA+TGG | + | chr5.4:13681312-13681331 | MS.gene59469:intron | 40.0% | |
| TCACTAAAGAAGCAAGTGCT+TGG | - | chr5.4:13683721-13683740 | None:intergenic | 40.0% | |
| TCTCAAGAGACAGTTGGTTA+TGG | - | chr5.4:13682176-13682195 | None:intergenic | 40.0% | |
| TGATTTAGGAAAGACTTCCC+TGG | - | chr5.4:13683635-13683654 | None:intergenic | 40.0% | |
| TGTCGGAAGTTGGAAAAATG+GGG | - | chr5.4:13679993-13680012 | None:intergenic | 40.0% | |
| TGTGGTGTTCCGTATAATTG+CGG | + | chr5.4:13683114-13683133 | MS.gene59469:intron | 40.0% | |
| TTATGTGCTGGAAACAGGAT+GGG | + | chr5.4:13682694-13682713 | MS.gene59469:intron | 40.0% | |
| TTGTTCCATCGTTGATGTTG+CGG | + | chr5.4:13681778-13681797 | MS.gene59469:intron | 40.0% | |
| TTTATGTGCTGGAAACAGGA+TGG | + | chr5.4:13682693-13682712 | MS.gene59469:intron | 40.0% | |
| TTTGACCAGAGTAAAGGCAA+AGG | - | chr5.4:13684155-13684174 | None:intergenic | 40.0% | |
| ! | AAAGAGGGTTGATTCCTTTG+AGG | + | chr5.4:13680202-13680221 | MS.gene59469:CDS | 40.0% |
| ! | AAGAGGGTTGATTCCTTTGA+GGG | + | chr5.4:13680203-13680222 | MS.gene59469:CDS | 40.0% |
| ! | GTGAAGCTTCTGCTGATTAA+AGG | + | chr5.4:13682952-13682971 | MS.gene59469:CDS | 40.0% |
| ! | GTTGATTCCTTTGAGGGATA+TGG | + | chr5.4:13680209-13680228 | MS.gene59469:CDS | 40.0% |
| ! | TTTTGTGTATAGGTCGTCCT+AGG | + | chr5.4:13681563-13681582 | MS.gene59469:intron | 40.0% |
| !! | AATAGAAGCGGGCTGAATAT+AGG | + | chr5.4:13683330-13683349 | MS.gene59469:intron | 40.0% |
| !! | AATCCTAGATGGGCTGTTTA+TGG | + | chr5.4:13680372-13680391 | MS.gene59469:CDS | 40.0% |
| !! | ACTTCCTTGGTGATGATGTA+TGG | + | chr5.4:13681005-13681024 | MS.gene59469:intron | 40.0% |
| !! | ATCCTAGATGGGCTGTTTAT+GGG | + | chr5.4:13680373-13680392 | MS.gene59469:CDS | 40.0% |
| !! | GCTGTTTTCATAAGCTATCC+TGG | + | chr5.4:13682465-13682484 | MS.gene59469:intron | 40.0% |
| !! | GTCTTTTGTTTGTCTCAGGA+TGG | + | chr5.4:13684114-13684133 | MS.gene59469:intron | 40.0% |
| !! | TCATTTGCTGTGTCTTAGGA+TGG | + | chr5.4:13682883-13682902 | MS.gene59469:intron | 40.0% |
| !!! | ACTGGTCATTGGGTTTTTTG+TGG | + | chr5.4:13683088-13683107 | MS.gene59469:intron | 40.0% |
| !!! | CTGGTCATTGGGTTTTTTGT+GGG | + | chr5.4:13683089-13683108 | MS.gene59469:intron | 40.0% |
| !!! | TTGGGTTTTTTGTGGGTTTG+TGG | + | chr5.4:13683096-13683115 | MS.gene59469:intron | 40.0% |
| ACAATGATGAATTCCCGGTG+AGG | - | chr5.4:13682330-13682349 | None:intergenic | 45.0% | |
| AGATTGAAACTTGCGAGGTG+TGG | - | chr5.4:13679848-13679867 | None:intergenic | 45.0% | |
| AGTGCCTAGGAATCCTAGAT+GGG | + | chr5.4:13680362-13680381 | MS.gene59469:CDS | 45.0% | |
| CAACATAACACCAACACACG+AGG | - | chr5.4:13683487-13683506 | None:intergenic | 45.0% | |
| CAAGACGCACAAAAAACTCG+CGG | - | chr5.4:13683169-13683188 | None:intergenic | 45.0% | |
| CAATGATGAATTCCCGGTGA+GGG | - | chr5.4:13682329-13682348 | None:intergenic | 45.0% | |
| CAGTGATTGTTCACCAGACA+TGG | - | chr5.4:13681664-13681683 | None:intergenic | 45.0% | |
| CGAGTTTCTCAAGAGACAGT+TGG | - | chr5.4:13682182-13682201 | None:intergenic | 45.0% | |
| CTACGTGTCAGTGTCGTATA+TGG | + | chr5.4:13680623-13680642 | MS.gene59469:intron | 45.0% | |
| GAAGTAGCAACTGACAAGTC+TGG | - | chr5.4:13681631-13681650 | None:intergenic | 45.0% | |
| GCATATTTCCATAAGCTCCC+AGG | - | chr5.4:13682486-13682505 | None:intergenic | 45.0% | |
| GGAAAGACTTCCCTGGTTAA+TGG | - | chr5.4:13683628-13683647 | None:intergenic | 45.0% | |
| GGTGTGGAAGAAGAAGAAGA+AGG | - | chr5.4:13679832-13679851 | None:intergenic | 45.0% | |
| GTCGGCTACATAAACAACCT+AGG | + | chr5.4:13681382-13681401 | MS.gene59469:intron | 45.0% | |
| GTGGTCCACAAAAGAGTAAG+AGG | - | chr5.4:13682847-13682866 | None:intergenic | 45.0% | |
| TAAGCTATCCTGGGAGCTTA+TGG | + | chr5.4:13682475-13682494 | MS.gene59469:intron | 45.0% | |
| TAGTGCCTAGGAATCCTAGA+TGG | + | chr5.4:13680361-13680380 | MS.gene59469:CDS | 45.0% | |
| TATGTGCTGGAAACAGGATG+GGG | + | chr5.4:13682695-13682714 | MS.gene59469:intron | 45.0% | |
| TCGTCCTAGGTTGTTTACCA+GGG | + | chr5.4:13681576-13681595 | MS.gene59469:CDS | 45.0% | |
| TGCCATCCATTAGGTACCAA+AGG | - | chr5.4:13681321-13681340 | None:intergenic | 45.0% | |
| TGTTTATGGGAGAGGTTTCG+AGG | + | chr5.4:13680386-13680405 | MS.gene59469:CDS | 45.0% | |
| TTACTCCGCAACATCAACGA+TGG | - | chr5.4:13681786-13681805 | None:intergenic | 45.0% | |
| TTCTTCTTATCCCCGTCTGT+CGG | - | chr5.4:13684230-13684249 | None:intergenic | 45.0% | |
| TTTGGCCGCTCTTTACAAAG+CGG | + | chr5.4:13682132-13682151 | MS.gene59469:CDS | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr5.4:13681360-13681379 | MS.gene59469:intron | 45.0% |
| ! | ATGGAGAGAAGAAGAGTGTG+TGG | - | chr5.4:13679807-13679826 | None:intergenic | 45.0% |
| ! | ATTGGCTCAGTTGAAGCCTT+TGG | + | chr5.4:13680266-13680285 | MS.gene59469:CDS | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr5.4:13681359-13681378 | MS.gene59469:intron | 45.0% |
| ! | CTACGTGTCATTGTCACATC+TGG | + | chr5.4:13680744-13680763 | MS.gene59469:intron | 45.0% |
| ! | CTTGCAGCAAAAGTGTGCAA+AGG | - | chr5.4:13681957-13681976 | None:intergenic | 45.0% |
| ! | GACTGTGCTGCTATGAAAAC+TGG | + | chr5.4:13680441-13680460 | MS.gene59469:CDS | 45.0% |
| ! | TGGAGAGAAGAAGAGTGTGT+GGG | - | chr5.4:13679806-13679825 | None:intergenic | 45.0% |
| ! | TGTGCTGCTATGAAAACTGG+AGG | + | chr5.4:13680444-13680463 | MS.gene59469:CDS | 45.0% |
| ! | TTGCACACTTTTGCTGCAAG+CGG | + | chr5.4:13681957-13681976 | MS.gene59469:CDS | 45.0% |
| !! | AGGTGCTTTTAATGGGTCGT+TGG | + | chr5.4:13683350-13683369 | MS.gene59469:intron | 45.0% |
| !! | CAGTTGAAGCCTTTGGTTCT+TGG | + | chr5.4:13680273-13680292 | MS.gene59469:CDS | 45.0% |
| !! | CTCGTGTGTTGGTGTTATGT+TGG | + | chr5.4:13683485-13683504 | MS.gene59469:intron | 45.0% |
| !! | GAAGCCTTTGGTTCTTGGTA+AGG | + | chr5.4:13680278-13680297 | MS.gene59469:CDS | 45.0% |
| !! | TATTGTTTAGGGTGCCGTTC+TGG | + | chr5.4:13680796-13680815 | MS.gene59469:intron | 45.0% |
| !! | TGGTGCTACTTCACAACCTT+TGG | + | chr5.4:13681302-13681321 | MS.gene59469:intron | 45.0% |
| ACGAGGTTGTTGTCGGAAGT+TGG | - | chr5.4:13680003-13680022 | None:intergenic | 50.0% | |
| ATACGTGTCAGCCACCAGAA+CGG | - | chr5.4:13680813-13680832 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr5.4:13681361-13681380 | None:intergenic | 50.0% | |
| CTCCCATAAACAGCCCATCT+AGG | - | chr5.4:13680378-13680397 | None:intergenic | 50.0% | |
| CTCGACCTTTGCCTTTACTC+TGG | + | chr5.4:13684147-13684166 | MS.gene59469:CDS | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr5.4:13681364-13681383 | MS.gene59469:intron | 50.0% | |
| GAATGCCTGAGTTGCTTCGT+AGG | - | chr5.4:13683403-13683422 | None:intergenic | 50.0% | |
| GACTGTCTTGTCTTCGAGGA+AGG | + | chr5.4:13679955-13679974 | MS.gene59469:CDS | 50.0% | |
| GAGTAAAGGCAAAGGTCGAG+TGG | - | chr5.4:13684147-13684166 | None:intergenic | 50.0% | |
| GCCTTATCACTTCTCCTGCA+AGG | - | chr5.4:13683851-13683870 | None:intergenic | 50.0% | |
| GCCTTGCAGGAGAAGTGATA+AGG | + | chr5.4:13683847-13683866 | MS.gene59469:intron | 50.0% | |
| GTCGTCCTAGGTTGTTTACC+AGG | + | chr5.4:13681575-13681594 | MS.gene59469:CDS | 50.0% | |
| GTTGTTTACCAGGGAGGAGA+GGG | + | chr5.4:13681585-13681604 | MS.gene59469:CDS | 50.0% | |
| TCCTAGGTTGTTTACCAGGG+AGG | + | chr5.4:13681579-13681598 | MS.gene59469:CDS | 50.0% | |
| TCCTCCCTGGTAAACAACCT+AGG | - | chr5.4:13681583-13681602 | None:intergenic | 50.0% | |
| TCTTCTTATCCCCGTCTGTC+GGG | - | chr5.4:13684229-13684248 | None:intergenic | 50.0% | |
| TTATAGACGCTCCCGACAGA+CGG | + | chr5.4:13684215-13684234 | MS.gene59469:CDS | 50.0% | |
| TTGCTGTGTCTTAGGATGGC+TGG | + | chr5.4:13682887-13682906 | MS.gene59469:intron | 50.0% | |
| ! | AAGAAGAGTGTGTGGGGTTG+TGG | - | chr5.4:13679799-13679818 | None:intergenic | 50.0% |
| ! | ACAGCCCATCTAGGATTCCT+AGG | - | chr5.4:13680369-13680388 | None:intergenic | 50.0% |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr5.4:13681358-13681377 | MS.gene59469:intron | 50.0% |
| ! | GGAGAGAAGAAGAGTGTGTG+GGG | - | chr5.4:13679805-13679824 | None:intergenic | 50.0% |
| !! | AAGGTGGGTTGAGTGATGAG+AGG | + | chr5.4:13680337-13680356 | MS.gene59469:CDS | 50.0% |
| !! | AGATGGGCTGTTTATGGGAG+AGG | + | chr5.4:13680378-13680397 | MS.gene59469:CDS | 50.0% |
| !! | AGGTGGGTTGAGTGATGAGA+GGG | + | chr5.4:13680338-13680357 | MS.gene59469:CDS | 50.0% |
| AATCTCAGTCCTCGCCTTGC+AGG | + | chr5.4:13683834-13683853 | MS.gene59469:intron | 55.0% | |
| ATCACTTCTCCTGCAAGGCG+AGG | - | chr5.4:13683846-13683865 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | - | chr5.4:13681373-13681392 | None:intergenic | 55.0% | |
| CAACAAATCCCTCTCCTCCC+TGG | - | chr5.4:13681596-13681615 | None:intergenic | 55.0% | |
| CAGGTGCGCTTGACACGTAA+TGG | + | chr5.4:13680565-13680584 | MS.gene59469:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr5.4:13681366-13681385 | None:intergenic | 55.0% | |
| CGGAGACTGTCTTGTCTTCG+AGG | + | chr5.4:13679951-13679970 | MS.gene59469:CDS | 55.0% | |
| GGTTGTTTACCAGGGAGGAG+AGG | + | chr5.4:13681584-13681603 | MS.gene59469:CDS | 55.0% | |
| GTGATGAGAGGGTAGTGCCT+AGG | + | chr5.4:13680349-13680368 | MS.gene59469:CDS | 55.0% | |
| TATAGACGCTCCCGACAGAC+GGG | + | chr5.4:13684216-13684235 | MS.gene59469:CDS | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | - | chr5.4:13681372-13681391 | None:intergenic | 55.0% | |
| !! | GTCTGTCGGGAGCGTCTATA+AGG | - | chr5.4:13684216-13684235 | None:intergenic | 55.0% |
| !! | TGTTTAGGGTGCCGTTCTGG+TGG | + | chr5.4:13680799-13680818 | MS.gene59469:intron | 55.0% |
| ATAGACGCTCCCGACAGACG+GGG | + | chr5.4:13684217-13684236 | MS.gene59469:CDS | 60.0% | |
| GATGAATTCCCGGTGAGGGC+AGG | - | chr5.4:13682325-13682344 | None:intergenic | 60.0% | |
| CGTGCTCTTCCTGCCCTCAC+CGG | + | chr5.4:13682313-13682332 | MS.gene59469:intron | 65.0% | |
| GTGCTCTTCCTGCCCTCACC+GGG | + | chr5.4:13682314-13682333 | MS.gene59469:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 13679766 | 13684254 | 13679766 | ID=MS.gene59469 |
| chr5.4 | mRNA | 13679766 | 13684254 | 13679766 | ID=MS.gene59469.t1;Parent=MS.gene59469 |
| chr5.4 | exon | 13679766 | 13680465 | 13679766 | ID=MS.gene59469.t1.exon1;Parent=MS.gene59469.t1 |
| chr5.4 | CDS | 13679766 | 13680465 | 13679766 | ID=cds.MS.gene59469.t1;Parent=MS.gene59469.t1 |
| chr5.4 | exon | 13681575 | 13681651 | 13681575 | ID=MS.gene59469.t1.exon2;Parent=MS.gene59469.t1 |
| chr5.4 | CDS | 13681575 | 13681651 | 13681575 | ID=cds.MS.gene59469.t1;Parent=MS.gene59469.t1 |
| chr5.4 | exon | 13681942 | 13682040 | 13681942 | ID=MS.gene59469.t1.exon3;Parent=MS.gene59469.t1 |
| chr5.4 | CDS | 13681942 | 13682040 | 13681942 | ID=cds.MS.gene59469.t1;Parent=MS.gene59469.t1 |
| chr5.4 | exon | 13682127 | 13682225 | 13682127 | ID=MS.gene59469.t1.exon4;Parent=MS.gene59469.t1 |
| chr5.4 | CDS | 13682127 | 13682225 | 13682127 | ID=cds.MS.gene59469.t1;Parent=MS.gene59469.t1 |
| chr5.4 | exon | 13682711 | 13682809 | 13682711 | ID=MS.gene59469.t1.exon5;Parent=MS.gene59469.t1 |
| chr5.4 | CDS | 13682711 | 13682809 | 13682711 | ID=cds.MS.gene59469.t1;Parent=MS.gene59469.t1 |
| chr5.4 | exon | 13682901 | 13682999 | 13682901 | ID=MS.gene59469.t1.exon6;Parent=MS.gene59469.t1 |
| chr5.4 | CDS | 13682901 | 13682999 | 13682901 | ID=cds.MS.gene59469.t1;Parent=MS.gene59469.t1 |
| chr5.4 | exon | 13684132 | 13684254 | 13684132 | ID=MS.gene59469.t1.exon7;Parent=MS.gene59469.t1 |
| chr5.4 | CDS | 13684132 | 13684254 | 13684132 | ID=cds.MS.gene59469.t1;Parent=MS.gene59469.t1 |
| Gene Sequence |
| Protein sequence |
