AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene68940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68940.t1 MTR_4g132300 97.712 437 10 0 1 437 1 437 0.0 884
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene68940.t1 AT1G11800 56.027 448 160 6 2 437 19 441 9.84e-169 481

Find 100 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAACATCTGATCCCATTT+TGG 0.157885 8.2:+1755077 None:intergenic
ATCATTTAGCAACTCTATAA+TGG 0.245684 8.2:-1755192 MS.gene68940:CDS
CATGATTTGCAGGACCATTT+TGG 0.249570 8.2:+1756510 None:intergenic
TAAAACGATCTAATCGCTTT+TGG 0.250022 8.2:+1754838 None:intergenic
CTTGTCCGGCCCCTCCAAAA+TGG 0.302988 8.2:-1755091 MS.gene68940:CDS
CCACTAGAGAGGGTTGATTC+TGG 0.306873 8.2:-1756171 MS.gene68940:CDS
TATAGAGTTGCTAAATGATT+TGG 0.312140 8.2:+1755196 None:intergenic
TGTTTGGTTTCGTGAGGATT+TGG 0.325697 8.2:-1756112 MS.gene68940:CDS
CGTCTTCGTCTTCTCCAAAA+TGG 0.334576 8.2:-1756524 MS.gene68940:CDS
TAATGATCACTGGGCAAAAC+AGG 0.337034 8.2:+1754696 None:intergenic
ACCTGAAAACAGATAAAATC+AGG 0.375798 8.2:+1756039 None:intergenic
TACGATTGCCTGTCAACATT+TGG 0.378788 8.2:+1754865 None:intergenic
GAAGAGTGTGCATGATTTGC+AGG 0.387844 8.2:+1756500 None:intergenic
AGTAGCCAAGGAATCCAAAA+AGG 0.402774 8.2:-1756298 MS.gene68940:CDS
ATTTACCAGCATACAATAGT+AGG 0.405645 8.2:+1755642 None:intergenic
TATGTCCAACCAGCTTCATT+TGG 0.412262 8.2:+1754903 None:intergenic
TGGTTTCGCAAAATGTTCAT+AGG 0.413386 8.2:+1756191 None:intergenic
TATGAACTGGGATGACAAAA+AGG 0.414590 8.2:-1754979 MS.gene68940:CDS
ATAAGCAATATTGACATGAT+TGG 0.417745 8.2:-1754792 MS.gene68940:CDS
CACTAGAGAGGGTTGATTCT+GGG 0.428324 8.2:-1756170 MS.gene68940:CDS
TTGTCCGGCCCCTCCAAAAT+GGG 0.431518 8.2:-1755090 MS.gene68940:CDS
TCATTTAGCAACTCTATAAT+GGG 0.436917 8.2:-1755191 MS.gene68940:CDS
TAAGCAATATTGACATGATT+GGG 0.440110 8.2:-1754791 MS.gene68940:CDS
CCGGTTGAACAGAATCTTCA+AGG 0.440963 8.2:+1756322 None:intergenic
CCTTGAAGATTCTGTTCAAC+CGG 0.441964 8.2:-1756322 MS.gene68940:CDS
AACAAAGAGAAGAAAGTAAG+AGG 0.444004 8.2:-1754741 MS.gene68940:CDS
ATCGATGATGATTCTTCCGT+TGG 0.444069 8.2:-1756393 MS.gene68940:CDS
TTGGATTCCTTGGCTACTAC+CGG 0.444756 8.2:+1756303 None:intergenic
CAGCAAGGAACGGGTGGAGC+AGG 0.457345 8.2:-1755057 MS.gene68940:CDS
GATATCGTTGAAGCTGGAAA+TGG 0.464894 8.2:+1756422 None:intergenic
AGAAGAGGGGTGTGGAGGTG+AGG 0.465331 8.2:+1756563 None:intergenic
AAGACGGGTGGCTTGATGCT+TGG 0.467239 8.2:-1754938 MS.gene68940:CDS
AATGGAAAGAACGGTGTTAC+GGG 0.468166 8.2:+1756440 None:intergenic
AGAACTTTGCATTGCTGAAG+TGG 0.472526 8.2:-1755165 MS.gene68940:CDS
GAGAAGAGGATGAAAGCTAT+TGG 0.477567 8.2:-1756084 MS.gene68940:CDS
TCAGATGTTCAGCAAGGAAC+GGG 0.477713 8.2:-1755066 MS.gene68940:CDS
AAATGGAAAGAACGGTGTTA+CGG 0.481769 8.2:+1756439 None:intergenic
GCAGAAGAAGAAGAGGGGTG+TGG 0.485783 8.2:+1756555 None:intergenic
GTCAATATCCTTTACAAGAC+GGG 0.488031 8.2:-1754953 MS.gene68940:CDS
GTTTCGTGAGGATTTGGAGT+TGG 0.489308 8.2:-1756106 MS.gene68940:CDS
AAGAGGCGAGATCAAACAAC+TGG 0.492477 8.2:-1754724 MS.gene68940:CDS
TTCAATCATCTCCAATGTCT+TGG 0.494355 8.2:-1756650 None:intergenic
AGGCTCTGAACATCCTCAAA+AGG 0.495956 8.2:-1755028 MS.gene68940:CDS
GTCGTTGATATCGTTGAAGC+TGG 0.496356 8.2:+1756416 None:intergenic
AGAGTTGCTAAATGATTTGG+TGG 0.498698 8.2:+1755199 None:intergenic
TACCGCAGAGGTGGCAAGTA+GGG 0.499776 8.2:+1756463 None:intergenic
TAAAAGCCAAGGATTCCAAA+AGG 0.500787 8.2:-1756233 MS.gene68940:CDS
AAGGAGACCATAATGATCAC+TGG 0.506006 8.2:+1754686 None:intergenic
CATTCAGATATTTGAGAAGG+TGG 0.508281 8.2:+1756600 None:intergenic
TTATCTCGAAATCACGTAAA+CGG 0.510151 8.2:+1754811 None:intergenic
AGGATTTGGAGTTGGAGAAG+AGG 0.513052 8.2:-1756098 MS.gene68940:CDS
GAAGAAGAAGAGGGGTGTGG+AGG 0.513948 8.2:+1756558 None:intergenic
CATTGCTGAAGTGGAGGATG+TGG 0.520787 8.2:-1755156 MS.gene68940:CDS
TGATCAACCATTAAAAGCCA+AGG 0.522361 8.2:-1756244 MS.gene68940:CDS
ACTTGCTAGAAAGTGTCAAA+AGG 0.527755 8.2:+1754667 None:intergenic
TCAAGCCACCCGTCTTGTAA+AGG 0.536203 8.2:+1754945 None:intergenic
ACGGGTGGAGCAGGCTAATG+AGG 0.537306 8.2:-1755048 MS.gene68940:CDS
TGTCAACATTTGGTTTGACT+TGG 0.538956 8.2:+1754875 None:intergenic
AAAAGCCAAGGATTCCAAAA+GGG 0.544672 8.2:-1756232 MS.gene68940:CDS
AGAAGTAGCAGAAGAAGAAG+AGG 0.546857 8.2:+1756548 None:intergenic
AAAAGCCTACTATTGTATGC+TGG 0.550331 8.2:-1755647 MS.gene68940:intron
AAGTCAAACCAAATGTTGAC+AGG 0.552513 8.2:-1754873 MS.gene68940:CDS
GTACTAAGACCAAATGAAGC+TGG 0.556624 8.2:-1754912 MS.gene68940:CDS
ATCAGATGTTCAGCAAGGAA+CGG 0.564097 8.2:-1755067 MS.gene68940:CDS
AGGCCAGAAAACAGAACCAA+CGG 0.565090 8.2:+1756377 None:intergenic
CCAGAATCAACCCTCTCTAG+TGG 0.566252 8.2:+1756171 None:intergenic
GAGAGGGTTGATTCTGGGAA+AGG 0.569735 8.2:-1756165 MS.gene68940:CDS
TCGCATTCAGATATTTGAGA+AGG 0.574572 8.2:+1756597 None:intergenic
CCATCTTGAGAGTCCTTGTC+CGG 0.575865 8.2:-1755105 MS.gene68940:CDS
CCTGAAAACAGATAAAATCA+GGG 0.584071 8.2:+1756040 None:intergenic
TTACAATGTTTGGTTTCGTG+AGG 0.584583 8.2:-1756118 MS.gene68940:CDS
GGCCTCTTCGATCGTGCAAG+AGG 0.587087 8.2:-1756359 MS.gene68940:CDS
GAAGTAGCAGAAGAAGAAGA+GGG 0.593335 8.2:+1756549 None:intergenic
CAATATTGACATGATTGGGA+TGG 0.597431 8.2:-1754787 MS.gene68940:CDS
CCGGACAAGGACTCTCAAGA+TGG 0.597814 8.2:+1755105 None:intergenic
GTACCGCAGAGGTGGCAAGT+AGG 0.598105 8.2:+1756462 None:intergenic
TGTTCAACCGGTAGTAGCCA+AGG 0.605044 8.2:-1756310 MS.gene68940:CDS
TAAGACCAAATGAAGCTGGT+TGG 0.607408 8.2:-1754908 MS.gene68940:CDS
AAGTAGCAGAAGAAGAAGAG+GGG 0.612744 8.2:+1756550 None:intergenic
GATGTTCAGCAAGGAACGGG+TGG 0.615438 8.2:-1755063 MS.gene68940:CDS
GGGCGGCAAGTCGTTTGTTG+TGG 0.616815 8.2:-1755135 MS.gene68940:CDS
AGGAGACCATAATGATCACT+GGG 0.618098 8.2:+1754687 None:intergenic
TTCCTCTTGCACGATCGAAG+AGG 0.618164 8.2:+1756357 None:intergenic
GGTCAATATCCTTTACAAGA+CGG 0.623069 8.2:-1754954 MS.gene68940:CDS
GAAGCTGGAAATGGAAAGAA+CGG 0.626576 8.2:+1756431 None:intergenic
CGGTTGAACAGAATCTTCAA+GGG 0.636842 8.2:+1756323 None:intergenic
AATGATCACTGGGCAAAACA+GGG 0.638417 8.2:+1754697 None:intergenic
TTGGTGGAGAAAGATTTCAC+TGG 0.638514 8.2:+1755215 None:intergenic
TGTTACGGGTACCGCAGAGG+TGG 0.642287 8.2:+1756454 None:intergenic
AGGACTCTCAAGATGGCTAG+TGG 0.647661 8.2:+1755112 None:intergenic
AATATCCTTTACAAGACGGG+TGG 0.648584 8.2:-1754950 MS.gene68940:CDS
AACCCTACTTGCCACCTCTG+CGG 0.653604 8.2:-1756465 MS.gene68940:CDS
TCTTTGTTGTATGAAACACC+AGG 0.659730 8.2:+1754756 None:intergenic
CTGAAAACAGATAAAATCAG+GGG 0.668394 8.2:+1756041 None:intergenic
ATTGCTGAAGTGGAGGATGT+GGG 0.669653 8.2:-1755155 MS.gene68940:CDS
ACTTTGCATTGCTGAAGTGG+AGG 0.670157 8.2:-1755162 MS.gene68940:CDS
ATGGGATCAGATGTTCAGCA+AGG 0.672446 8.2:-1755072 MS.gene68940:CDS
CGGTGTTACGGGTACCGCAG+AGG 0.672506 8.2:+1756451 None:intergenic
ATTGGGATGGATGAATTACC+TGG 0.700985 8.2:-1754774 MS.gene68940:CDS
GCTGAAGTGGAGGATGTGGG+CGG 0.736984 8.2:-1755152 MS.gene68940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAAAATGCAAAAAAAA+AGG + chr8.2:1755507-1755526 None:intergenic 10.0%
!!! TCAATTTTCTAAATAATTAC+CGG - chr8.2:1755407-1755426 MS.gene68940:intron 15.0%
!! ACATTACAGAATGATAAAAA+AGG + chr8.2:1755692-1755711 None:intergenic 20.0%
!!! ATTTTTTAGACCGTTTTATT+TGG - chr8.2:1756000-1756019 MS.gene68940:intron 20.0%
!!! TCATAGTTTTTGTATATGAT+TGG - chr8.2:1755802-1755821 MS.gene68940:intron 20.0%
!!! TTTTGCATTTTATATTTGTG+TGG - chr8.2:1755511-1755530 MS.gene68940:intron 20.0%
!!! TTTTTTAGACCGTTTTATTT+GGG - chr8.2:1756001-1756020 MS.gene68940:intron 20.0%
! AAAAATACTTCAAGCAAAAC+AGG + chr8.2:1755986-1756005 None:intergenic 25.0%
! ATAAGCAATATTGACATGAT+TGG - chr8.2:1756509-1756528 MS.gene68940:CDS 25.0%
! ATCATTTAGCAACTCTATAA+TGG - chr8.2:1756109-1756128 MS.gene68940:CDS 25.0%
! ATTGTTGTCAATTGTAAAAC+TGG + chr8.2:1755760-1755779 None:intergenic 25.0%
! CATAGATATTAGCATAACAT+TGG + chr8.2:1755929-1755948 None:intergenic 25.0%
! TAAGCAATATTGACATGATT+GGG - chr8.2:1756510-1756529 MS.gene68940:CDS 25.0%
! TATAGAGTTGCTAAATGATT+TGG + chr8.2:1756108-1756127 None:intergenic 25.0%
! TCATTTAGCAACTCTATAAT+GGG - chr8.2:1756110-1756129 MS.gene68940:CDS 25.0%
!! AAAAATATCAATAGCCCTTT+TGG + chr8.2:1755086-1755105 None:intergenic 25.0%
!!! ACTTTTTCTATCAGAAATGT+CGG + chr8.2:1755327-1755346 None:intergenic 25.0%
!!! AGATTTTGAGTTACAATGTT+TGG - chr8.2:1755173-1755192 MS.gene68940:CDS 25.0%
AACAAAGAGAAGAAAGTAAG+AGG - chr8.2:1756560-1756579 MS.gene68940:CDS 30.0%
ACCTGAAAACAGATAAAATC+AGG + chr8.2:1755265-1755284 None:intergenic 30.0%
ATTTACCAGCATACAATAGT+AGG + chr8.2:1755662-1755681 None:intergenic 30.0%
CCTGAAAACAGATAAAATCA+GGG + chr8.2:1755264-1755283 None:intergenic 30.0%
CTGAAAACAGATAAAATCAG+GGG + chr8.2:1755263-1755282 None:intergenic 30.0%
TTATCTCGAAATCACGTAAA+CGG + chr8.2:1756493-1756512 None:intergenic 30.0%
! AACGAAATCAATAGCCTTTT+TGG + chr8.2:1755020-1755039 None:intergenic 30.0%
! TAAAACGATCTAATCGCTTT+TGG + chr8.2:1756466-1756485 None:intergenic 30.0%
! TCTGTCATTTCATATGTGAT+TGG - chr8.2:1755829-1755848 MS.gene68940:intron 30.0%
AAAAGCCAAGGATTCCAAAA+GGG - chr8.2:1755069-1755088 MS.gene68940:CDS 35.0%
AAAAGCCTACTATTGTATGC+TGG - chr8.2:1755654-1755673 MS.gene68940:CDS 35.0%
AAGTCAAACCAAATGTTGAC+AGG - chr8.2:1756428-1756447 MS.gene68940:CDS 35.0%
ACCCTCTTTCCCAAATAAAA+CGG + chr8.2:1756013-1756032 None:intergenic 35.0%
CAATATTGACATGATTGGGA+TGG - chr8.2:1756514-1756533 MS.gene68940:CDS 35.0%
CATTCAGATATTTGAGAAGG+TGG + chr8.2:1754704-1754723 None:intergenic 35.0%
GATCACTGTGACAGTATTAT+GGG - chr8.2:1755948-1755967 MS.gene68940:intron 35.0%
GGTCAATATCCTTTACAAGA+CGG - chr8.2:1756347-1756366 MS.gene68940:CDS 35.0%
GTCAATATCCTTTACAAGAC+GGG - chr8.2:1756348-1756367 MS.gene68940:CDS 35.0%
GTTGCACATATGACTATATC+AGG + chr8.2:1755721-1755740 None:intergenic 35.0%
TAAAAGCCAAGGATTCCAAA+AGG - chr8.2:1755068-1755087 MS.gene68940:CDS 35.0%
TATGAACTGGGATGACAAAA+AGG - chr8.2:1756322-1756341 MS.gene68940:CDS 35.0%
TCGCATTCAGATATTTGAGA+AGG + chr8.2:1754707-1754726 None:intergenic 35.0%
TGATCAACCATTAAAAGCCA+AGG - chr8.2:1755057-1755076 MS.gene68940:CDS 35.0%
TGATCACTGTGACAGTATTA+TGG - chr8.2:1755947-1755966 MS.gene68940:intron 35.0%
TGGTTTCGCAAAATGTTCAT+AGG + chr8.2:1755113-1755132 None:intergenic 35.0%
! AAATGGAAAGAACGGTGTTA+CGG + chr8.2:1754865-1754884 None:intergenic 35.0%
! AATAGCCTTTTTGGATTCCT+TGG + chr8.2:1755011-1755030 None:intergenic 35.0%
! AGAGTTGCTAAATGATTTGG+TGG + chr8.2:1756105-1756124 None:intergenic 35.0%
! ATTTTGTTCACCTGTATCAC+AGG - chr8.2:1755543-1755562 MS.gene68940:intron 35.0%
! CCCTGATTTTATCTGTTTTC+AGG - chr8.2:1755261-1755280 MS.gene68940:intron 35.0%
! TCTTTGTTGTATGAAACACC+AGG + chr8.2:1756548-1756567 None:intergenic 35.0%
! TTACAATGTTTGGTTTCGTG+AGG - chr8.2:1755183-1755202 MS.gene68940:CDS 35.0%
!! ACATTTTCAAGCGATCTACA+TGG - chr8.2:1755587-1755606 MS.gene68940:intron 35.0%
!! ACTTGCTAGAAAGTGTCAAA+AGG + chr8.2:1756637-1756656 None:intergenic 35.0%
!! TGTCAACATTTGGTTTGACT+TGG + chr8.2:1756429-1756448 None:intergenic 35.0%
!! TTGGAATCCTTGGCTTTTAA+TGG + chr8.2:1755067-1755086 None:intergenic 35.0%
!!! ACCGTTTTATTTGGGAAAGA+GGG - chr8.2:1756009-1756028 MS.gene68940:intron 35.0%
AACTGGGATGACAAAAAGGA+TGG - chr8.2:1756326-1756345 MS.gene68940:CDS 40.0%
AAGGAGACCATAATGATCAC+TGG + chr8.2:1756618-1756637 None:intergenic 40.0%
AAGTAGCAGAAGAAGAAGAG+GGG + chr8.2:1754754-1754773 None:intergenic 40.0%
AATATCCTTTACAAGACGGG+TGG - chr8.2:1756351-1756370 MS.gene68940:CDS 40.0%
AATGATCACTGGGCAAAACA+GGG + chr8.2:1756607-1756626 None:intergenic 40.0%
AATTACCGGTATCTACGTGA+CGG - chr8.2:1755421-1755440 MS.gene68940:intron 40.0%
AGAACTTTGCATTGCTGAAG+TGG - chr8.2:1756136-1756155 MS.gene68940:CDS 40.0%
AGAAGTAGCAGAAGAAGAAG+AGG + chr8.2:1754756-1754775 None:intergenic 40.0%
AGGAGACCATAATGATCACT+GGG + chr8.2:1756617-1756636 None:intergenic 40.0%
AGTAGCCAAGGAATCCAAAA+AGG - chr8.2:1755003-1755022 MS.gene68940:CDS 40.0%
ATCAGATGTTCAGCAAGGAA+CGG - chr8.2:1756234-1756253 MS.gene68940:CDS 40.0%
ATCGATGATGATTCTTCCGT+TGG - chr8.2:1754908-1754927 MS.gene68940:CDS 40.0%
ATTGGGATGGATGAATTACC+TGG - chr8.2:1756527-1756546 MS.gene68940:CDS 40.0%
CACCCCCAAAAACAACATTA+GGG + chr8.2:1756301-1756320 None:intergenic 40.0%
CCTTGAAGATTCTGTTCAAC+CGG - chr8.2:1754979-1754998 MS.gene68940:CDS 40.0%
CGGTTGAACAGAATCTTCAA+GGG + chr8.2:1754981-1755000 None:intergenic 40.0%
GAAGCTGGAAATGGAAAGAA+CGG + chr8.2:1754873-1754892 None:intergenic 40.0%
GAAGTAGCAGAAGAAGAAGA+GGG + chr8.2:1754755-1754774 None:intergenic 40.0%
GAGAAGAGGATGAAAGCTAT+TGG - chr8.2:1755217-1755236 MS.gene68940:CDS 40.0%
GATATCGTTGAAGCTGGAAA+TGG + chr8.2:1754882-1754901 None:intergenic 40.0%
GGTAAGTGTTAGTATGTGTC+TGG - chr8.2:1755442-1755461 MS.gene68940:intron 40.0%
GTACTAAGACCAAATGAAGC+TGG - chr8.2:1756389-1756408 MS.gene68940:CDS 40.0%
TAAGACCAAATGAAGCTGGT+TGG - chr8.2:1756393-1756412 MS.gene68940:CDS 40.0%
TAATGATCACTGGGCAAAAC+AGG + chr8.2:1756608-1756627 None:intergenic 40.0%
TACGATTGCCTGTCAACATT+TGG + chr8.2:1756439-1756458 None:intergenic 40.0%
TATGTCCAACCAGCTTCATT+TGG + chr8.2:1756401-1756420 None:intergenic 40.0%
TCACCCCCAAAAACAACATT+AGG + chr8.2:1756302-1756321 None:intergenic 40.0%
TTGGTGGAGAAAGATTTCAC+TGG + chr8.2:1756089-1756108 None:intergenic 40.0%
! AACATCTGATCCCATTTTGG+AGG + chr8.2:1756224-1756243 None:intergenic 40.0%
! ACATCTGATCCCATTTTGGA+GGG + chr8.2:1756223-1756242 None:intergenic 40.0%
! ATTTTGCGAAACCACTAGAG+AGG - chr8.2:1755119-1755138 MS.gene68940:CDS 40.0%
! CTGAACATCTGATCCCATTT+TGG + chr8.2:1756227-1756246 None:intergenic 40.0%
! GTTTTGCCCAGTGATCATTA+TGG - chr8.2:1756608-1756627 MS.gene68940:CDS 40.0%
! TGTTTGGTTTCGTGAGGATT+TGG - chr8.2:1755189-1755208 MS.gene68940:CDS 40.0%
! TTTTGCGAAACCACTAGAGA+GGG - chr8.2:1755120-1755139 MS.gene68940:CDS 40.0%
!! AATGGAAAGAACGGTGTTAC+GGG + chr8.2:1754864-1754883 None:intergenic 40.0%
!! CATGATTTGCAGGACCATTT+TGG + chr8.2:1754794-1754813 None:intergenic 40.0%
!! TTTTCAAGCGATCTACATGG+TGG - chr8.2:1755590-1755609 MS.gene68940:intron 40.0%
!! TTTTGGGGGTGATATGAACT+GGG - chr8.2:1756310-1756329 MS.gene68940:CDS 40.0%
!! TTTTTGGGGGTGATATGAAC+TGG - chr8.2:1756309-1756328 MS.gene68940:CDS 40.0%
!!! AATAGCCCTTTTGGAATCCT+TGG + chr8.2:1755077-1755096 None:intergenic 40.0%
!!! AGGCACCCTAATGTTGTTTT+TGG - chr8.2:1756293-1756312 MS.gene68940:CDS 40.0%
!!! CACCCTAATGTTGTTTTTGG+GGG - chr8.2:1756296-1756315 MS.gene68940:CDS 40.0%
!!! GACCGTTTTATTTGGGAAAG+AGG - chr8.2:1756008-1756027 MS.gene68940:intron 40.0%
!!! GCACCCTAATGTTGTTTTTG+GGG - chr8.2:1756295-1756314 MS.gene68940:CDS 40.0%
!!! GGCACCCTAATGTTGTTTTT+GGG - chr8.2:1756294-1756313 MS.gene68940:CDS 40.0%
AAGAGGCGAGATCAAACAAC+TGG - chr8.2:1756577-1756596 MS.gene68940:CDS 45.0%
ACTTACCGTCACGTAGATAC+CGG + chr8.2:1755429-1755448 None:intergenic 45.0%
ACTTTGCATTGCTGAAGTGG+AGG - chr8.2:1756139-1756158 MS.gene68940:CDS 45.0%
AGGCCAGAAAACAGAACCAA+CGG + chr8.2:1754927-1754946 None:intergenic 45.0%
ATGGGATCAGATGTTCAGCA+AGG - chr8.2:1756229-1756248 MS.gene68940:CDS 45.0%
ATTGCTGAAGTGGAGGATGT+GGG - chr8.2:1756146-1756165 MS.gene68940:CDS 45.0%
CCGGTTGAACAGAATCTTCA+AGG + chr8.2:1754982-1755001 None:intergenic 45.0%
CGTCTTCGTCTTCTCCAAAA+TGG - chr8.2:1754777-1754796 MS.gene68940:CDS 45.0%
CTAGTAACCTCCTGTGATAC+AGG + chr8.2:1755556-1755575 None:intergenic 45.0%
GTCGTTGATATCGTTGAAGC+TGG + chr8.2:1754888-1754907 None:intergenic 45.0%
TCAGATGTTCAGCAAGGAAC+GGG - chr8.2:1756235-1756254 MS.gene68940:CDS 45.0%
TTGGATTCCTTGGCTACTAC+CGG + chr8.2:1755001-1755020 None:intergenic 45.0%
TTGTTCACCTGTATCACAGG+AGG - chr8.2:1755546-1755565 MS.gene68940:intron 45.0%
! AGGATTTGGAGTTGGAGAAG+AGG - chr8.2:1755203-1755222 MS.gene68940:CDS 45.0%
! CACTAGAGAGGGTTGATTCT+GGG - chr8.2:1755131-1755150 MS.gene68940:CDS 45.0%
! GAAGAGTGTGCATGATTTGC+AGG + chr8.2:1754804-1754823 None:intergenic 45.0%
! GTTTCGTGAGGATTTGGAGT+TGG - chr8.2:1755195-1755214 MS.gene68940:CDS 45.0%
!! AGGCTCTGAACATCCTCAAA+AGG - chr8.2:1756273-1756292 MS.gene68940:CDS 45.0%
!! ATCAAGCACTGACGCAGAAT+CGG + chr8.2:1755471-1755490 None:intergenic 45.0%
!! CAACATTAGGGTGCCTTTTG+AGG + chr8.2:1756289-1756308 None:intergenic 45.0%
!! CATCTGATCCCATTTTGGAG+GGG + chr8.2:1756222-1756241 None:intergenic 45.0%
!!! CTTCCGTTGGTTCTGTTTTC+TGG - chr8.2:1754921-1754940 MS.gene68940:CDS 45.0%
AGGACTCTCAAGATGGCTAG+TGG + chr8.2:1756192-1756211 None:intergenic 50.0%
CATTGCTGAAGTGGAGGATG+TGG - chr8.2:1756145-1756164 MS.gene68940:CDS 50.0%
CCAGAATCAACCCTCTCTAG+TGG + chr8.2:1755133-1755152 None:intergenic 50.0%
CCATCTTGAGAGTCCTTGTC+CGG - chr8.2:1756196-1756215 MS.gene68940:CDS 50.0%
GTACGACACTAACACGACAC+TGG - chr8.2:1755360-1755379 MS.gene68940:intron 50.0%
TCAAGCCACCCGTCTTGTAA+AGG + chr8.2:1756359-1756378 None:intergenic 50.0%
TGTTCAACCGGTAGTAGCCA+AGG - chr8.2:1754991-1755010 MS.gene68940:CDS 50.0%
TTCCTCTTGCACGATCGAAG+AGG + chr8.2:1754947-1754966 None:intergenic 50.0%
! CCACTAGAGAGGGTTGATTC+TGG - chr8.2:1755130-1755149 MS.gene68940:CDS 50.0%
! GAGAGGGTTGATTCTGGGAA+AGG - chr8.2:1755136-1755155 MS.gene68940:CDS 50.0%
AACCCTACTTGCCACCTCTG+CGG - chr8.2:1754836-1754855 MS.gene68940:CDS 55.0%
AAGACGGGTGGCTTGATGCT+TGG - chr8.2:1756363-1756382 MS.gene68940:CDS 55.0%
CCGGACAAGGACTCTCAAGA+TGG + chr8.2:1756199-1756218 None:intergenic 55.0%
GATGTTCAGCAAGGAACGGG+TGG - chr8.2:1756238-1756257 MS.gene68940:CDS 55.0%
GCAGAAGAAGAAGAGGGGTG+TGG + chr8.2:1754749-1754768 None:intergenic 55.0%
TACCGCAGAGGTGGCAAGTA+GGG + chr8.2:1754841-1754860 None:intergenic 55.0%
TTGTCCGGCCCCTCCAAAAT+GGG - chr8.2:1756211-1756230 MS.gene68940:CDS 55.0%
! GAAGAAGAAGAGGGGTGTGG+AGG + chr8.2:1754746-1754765 None:intergenic 55.0%
!! TGATCCCATTTTGGAGGGGC+CGG + chr8.2:1756218-1756237 None:intergenic 55.0%
ACGGGTGGAGCAGGCTAATG+AGG - chr8.2:1756253-1756272 MS.gene68940:CDS 60.0%
CTTGTCCGGCCCCTCCAAAA+TGG - chr8.2:1756210-1756229 MS.gene68940:CDS 60.0%
GCTGAAGTGGAGGATGTGGG+CGG - chr8.2:1756149-1756168 MS.gene68940:CDS 60.0%
GGCCTCTTCGATCGTGCAAG+AGG - chr8.2:1754942-1754961 MS.gene68940:CDS 60.0%
GTACCGCAGAGGTGGCAAGT+AGG + chr8.2:1754842-1754861 None:intergenic 60.0%
! AGAAGAGGGGTGTGGAGGTG+AGG + chr8.2:1754741-1754760 None:intergenic 60.0%
! GGGCGGCAAGTCGTTTGTTG+TGG - chr8.2:1756166-1756185 MS.gene68940:CDS 60.0%
! TGTTACGGGTACCGCAGAGG+TGG + chr8.2:1754850-1754869 None:intergenic 60.0%
!! CATTTTGGAGGGGCCGGACA+AGG + chr8.2:1756212-1756231 None:intergenic 60.0%
CAGCAAGGAACGGGTGGAGC+AGG - chr8.2:1756244-1756263 MS.gene68940:CDS 65.0%
!! CGGTGTTACGGGTACCGCAG+AGG + chr8.2:1754853-1754872 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 1754665 1756658 1754665 ID=MS.gene68940
chr8.2 mRNA 1754665 1756658 1754665 ID=MS.gene68940.t1;Parent=MS.gene68940
chr8.2 exon 1756041 1756658 1756041 ID=MS.gene68940.t1.exon1;Parent=MS.gene68940.t1
chr8.2 CDS 1756041 1756658 1756041 ID=cds.MS.gene68940.t1;Parent=MS.gene68940.t1
chr8.2 exon 1755648 1755758 1755648 ID=MS.gene68940.t1.exon2;Parent=MS.gene68940.t1
chr8.2 CDS 1755648 1755758 1755648 ID=cds.MS.gene68940.t1;Parent=MS.gene68940.t1
chr8.2 exon 1754665 1755249 1754665 ID=MS.gene68940.t1.exon3;Parent=MS.gene68940.t1
chr8.2 CDS 1754665 1755249 1754665 ID=cds.MS.gene68940.t1;Parent=MS.gene68940.t1
Gene Sequence

>MS.gene68940

ATGTCTTGGTCATGCAAAAAATGTACTTTCGTCAATCCACCTTCTCAAATATCTGAATGCGAAATTTGTTTCTCCTCACCTCCACACCCCTCTTCTTCTTCTGCTACTTCTTCGTCTTCGTCTTCTCCAAAATGGTCCTGCAAATCATGCACACTCTTCAACTCTTACAAAAACCCTACTTGCCACCTCTGCGGTACCCGTAACACCGTTCTTTCCATTTCCAGCTTCAACGATATCAACGACATCGATGATGATTCTTCCGTTGGTTCTGTTTTCTGGCCTCTTCGATCGTGCAAGAGGAAAGCTGTAGATTCCCTTGAAGATTCTGTTCAACCGGTAGTAGCCAAGGAATCCAAAAAGGCTATTGATTTCGTTGATTTCTCTGAAGATTTTGATCAACCATTAAAAGCCAAGGATTCCAAAAGGGCTATTGATATTTTTGATTCCTATGAACATTTTGCGAAACCACTAGAGAGGGTTGATTCTGGGAAAGGTGTTAGTTCGTTGAAGATTTTGAGTTACAATGTTTGGTTTCGTGAGGATTTGGAGTTGGAGAAGAGGATGAAAGCTATTGGTGATCTTGTTTTGTTGCATTCCCCTGATTTTATCTGTTTTCAGGTTTCATTATATCACATATTATATTTACTATCTTTGCAGCACCGACATTTCTGATAGAAAAAGTGTACAATGTCAATGTACGACACTAACACGACACTGGCACATGTGATTACATTTAATTATGTCAATTTTCTAAATAATTACCGGTATCTACGTGACGGTAAGTGTTAGTATGTGTCTGGTGTCCGATTCTGCGTCAGTGCTTGATAGTTTACAATACACCTTTTTTTTTGCATTTTATATTTGTGTGGCTTTGTTTTATTTTGTTCACCTGTATCACAGGAGGTTACTAGCGATATATATGACATTTTCAAGCGATCTACATGGTGGAATGTATATCATTGTTCAGTTTCTTCTGAGAAAGCTTATTCAAAAGCCTACTATTGTATGCTGGTAAATTTCACAGCCTTTTTTATCATTCTGTAATGTAATCTGCCTGATATAGTCATATGTGCAACAATCTTTCTTTATAATCCAGTTTTACAATTGACAACAATGACGCATTTGTTTTGATTATTATCATAGTTTTTGTATATGATTGGTACATCTGTCATTTCATATGTGATTGGTACATCTGTTATATTGTCTGCTAGCATGAAATCTGTTCAGAAGAGCATCAAGCTTCGTGCTAAATAACTGTATGCCAATGTTATGCTAATATCTATGATCACTGTGACAGTATTATGGGTAAAAAGCTCATCCTGTTTTGCTTGAAGTATTTTTTAGACCGTTTTATTTGGGAAAGAGGGTGTTATTCTTATGTACTGAAATATCTGTCAAATTAATTTCAGTTAAGCAAACTGCCAGTGAAATCTTTCTCCACCAAATCATTTAGCAACTCTATAATGGGAAGAGAACTTTGCATTGCTGAAGTGGAGGATGTGGGCGGCAAGTCGTTTGTTGTGGCCACTAGCCATCTTGAGAGTCCTTGTCCGGCCCCTCCAAAATGGGATCAGATGTTCAGCAAGGAACGGGTGGAGCAGGCTAATGAGGCTCTGAACATCCTCAAAAGGCACCCTAATGTTGTTTTTGGGGGTGATATGAACTGGGATGACAAAAAGGATGGTCAATATCCTTTACAAGACGGGTGGCTTGATGCTTGGTCTGTACTAAGACCAAATGAAGCTGGTTGGACATATGATACCAAGTCAAACCAAATGTTGACAGGCAATCGTACTCTCCAAAAGCGATTAGATCGTTTTATTTGCCGTTTACGTGATTTCGAGATAAGCAATATTGACATGATTGGGATGGATGAATTACCTGGTGTTTCATACAACAAAGAGAAGAAAGTAAGAGGCGAGATCAAACAACTGGTATGCCCTGTTTTGCCCAGTGATCATTATGGTCTCCTTTTGACACTTTCTAGCAAGTAG
Protein sequence

>MS.gene68940.t1

MSWSCKKCTFVNPPSQISECEICFSSPPHPSSSSATSSSSSSPKWSCKSCTLFNSYKNPTCHLCGTRNTVLSISSFNDINDIDDDSSVGSVFWPLRSCKRKAVDSLEDSVQPVVAKESKKAIDFVDFSEDFDQPLKAKDSKRAIDIFDSYEHFAKPLERVDSGKGVSSLKILSYNVWFREDLELEKRMKAIGDLVLLHSPDFICFQEVTSDIYDIFKRSTWWNVYHCSVSSEKAYSKAYYCMLLSKLPVKSFSTKSFSNSIMGRELCIAEVEDVGGKSFVVATSHLESPCPAPPKWDQMFSKERVEQANEALNILKRHPNVVFGGDMNWDDKKDGQYPLQDGWLDAWSVLRPNEAGWTYDTKSNQMLTGNRTLQKRLDRFICRLRDFEISNIDMIGMDELPGVSYNKEKKVRGEIKQLVCPVLPSDHYGLLLTLSSK