Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75605.t1 | XP_003601790.1 | 89.7 | 203 | 19 | 1 | 1 | 201 | 1 | 203 | 6.20E-99 | 370.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75605.t1 | P92792 | 58.9 | 192 | 78 | 1 | 5 | 195 | 4 | 195 | 1.2e-58 | 227.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75605.t1 | G7JBZ8 | 89.7 | 203 | 19 | 1 | 1 | 201 | 1 | 203 | 4.5e-99 | 370.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene75605 | 0.826408 | 2.76E-54 | -1.69E-46 |
| MS.gene049159 | MS.gene75605 | 0.836036 | 1.18E-56 | -1.69E-46 |
| MS.gene049166 | MS.gene75605 | 0.81228 | 4.59E-51 | -1.69E-46 |
| MS.gene049255 | MS.gene75605 | 0.803749 | 3.00E-49 | -1.69E-46 |
| MS.gene049368 | MS.gene75605 | 0.80933 | 2.00E-50 | -1.69E-46 |
| MS.gene049756 | MS.gene75605 | 0.811849 | 5.70E-51 | -1.69E-46 |
| MS.gene050085 | MS.gene75605 | 0.82643 | 2.72E-54 | -1.69E-46 |
| MS.gene050114 | MS.gene75605 | 0.806353 | 8.57E-50 | -1.69E-46 |
| MS.gene050277 | MS.gene75605 | 0.822838 | 1.91E-53 | -1.69E-46 |
| MS.gene050317 | MS.gene75605 | 0.812269 | 4.62E-51 | -1.69E-46 |
| MS.gene050654 | MS.gene75605 | 0.8135 | 2.48E-51 | -1.69E-46 |
| MS.gene050689 | MS.gene75605 | 0.829672 | 4.51E-55 | -1.69E-46 |
| MS.gene050724 | MS.gene75605 | 0.806677 | 7.32E-50 | -1.69E-46 |
| MS.gene050941 | MS.gene75605 | 0.811211 | 7.84E-51 | -1.69E-46 |
| MS.gene051003 | MS.gene75605 | 0.846807 | 1.72E-59 | -1.69E-46 |
| MS.gene051243 | MS.gene75605 | 0.813242 | 2.83E-51 | -1.69E-46 |
| MS.gene051245 | MS.gene75605 | 0.80351 | 3.37E-49 | -1.69E-46 |
| MS.gene051328 | MS.gene75605 | 0.811335 | 7.37E-51 | -1.69E-46 |
| MS.gene051343 | MS.gene75605 | 0.828958 | 6.73E-55 | -1.69E-46 |
| MS.gene05134 | MS.gene75605 | 0.824663 | 7.14E-54 | -1.69E-46 |
| MS.gene051452 | MS.gene75605 | 0.81849 | 1.91E-52 | -1.69E-46 |
| MS.gene051757 | MS.gene75605 | 0.823479 | 1.35E-53 | -1.69E-46 |
| MS.gene05188 | MS.gene75605 | 0.856513 | 3.06E-62 | -1.69E-46 |
| MS.gene051975 | MS.gene75605 | 0.865665 | 5.01E-65 | -1.69E-46 |
| MS.gene052012 | MS.gene75605 | 0.826368 | 2.82E-54 | -1.69E-46 |
| MS.gene052434 | MS.gene75605 | 0.855484 | 6.12E-62 | -1.69E-46 |
| MS.gene052889 | MS.gene75605 | 0.803791 | 2.95E-49 | -1.69E-46 |
| MS.gene052954 | MS.gene75605 | 0.81851 | 1.89E-52 | -1.69E-46 |
| MS.gene053008 | MS.gene75605 | 0.832487 | 9.19E-56 | -1.69E-46 |
| MS.gene053058 | MS.gene75605 | 0.851847 | 6.80E-61 | -1.69E-46 |
| MS.gene053226 | MS.gene75605 | 0.815641 | 8.33E-52 | -1.69E-46 |
| MS.gene053381 | MS.gene75605 | 0.826927 | 2.07E-54 | -1.69E-46 |
| MS.gene054657 | MS.gene75605 | 0.815853 | 7.47E-52 | -1.69E-46 |
| MS.gene054658 | MS.gene75605 | 0.818484 | 1.91E-52 | -1.69E-46 |
| MS.gene054823 | MS.gene75605 | 0.805167 | 1.52E-49 | -1.69E-46 |
| MS.gene05517 | MS.gene75605 | 0.872087 | 4.16E-67 | -1.69E-46 |
| MS.gene055222 | MS.gene75605 | 0.802951 | 4.40E-49 | -1.69E-46 |
| MS.gene055311 | MS.gene75605 | 0.828575 | 8.33E-55 | -1.69E-46 |
| MS.gene055313 | MS.gene75605 | 0.820733 | 5.87E-53 | -1.69E-46 |
| MS.gene055314 | MS.gene75605 | 0.805497 | 1.30E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene75605 | 0.817978 | 2.49E-52 | -1.69E-46 |
| MS.gene055603 | MS.gene75605 | 0.834253 | 3.33E-56 | -1.69E-46 |
| MS.gene055623 | MS.gene75605 | 0.842804 | 2.07E-58 | -1.69E-46 |
| MS.gene056181 | MS.gene75605 | 0.835063 | 2.09E-56 | -1.69E-46 |
| MS.gene056403 | MS.gene75605 | 0.829725 | 4.38E-55 | -1.69E-46 |
| MS.gene056605 | MS.gene75605 | 0.820745 | 5.83E-53 | -1.69E-46 |
| MS.gene056631 | MS.gene75605 | 0.826052 | 3.35E-54 | -1.69E-46 |
| MS.gene056699 | MS.gene75605 | 0.801867 | 7.35E-49 | -1.69E-46 |
| MS.gene056760 | MS.gene75605 | 0.808412 | 3.14E-50 | -1.69E-46 |
| MS.gene056787 | MS.gene75605 | 0.840791 | 7.03E-58 | -1.69E-46 |
| MS.gene056831 | MS.gene75605 | 0.805123 | 1.55E-49 | -1.69E-46 |
| MS.gene056901 | MS.gene75605 | 0.810773 | 9.76E-51 | -1.69E-46 |
| MS.gene056986 | MS.gene75605 | 0.858463 | 8.10E-63 | -1.69E-46 |
| MS.gene057034 | MS.gene75605 | 0.820529 | 6.54E-53 | -1.69E-46 |
| MS.gene057140 | MS.gene75605 | 0.857807 | 1.27E-62 | -1.69E-46 |
| MS.gene057208 | MS.gene75605 | 0.803627 | 3.19E-49 | -1.69E-46 |
| MS.gene057360 | MS.gene75605 | 0.833603 | 4.85E-56 | -1.69E-46 |
| MS.gene057693 | MS.gene75605 | 0.805567 | 1.25E-49 | -1.69E-46 |
| MS.gene05781 | MS.gene75605 | 0.80106 | 1.08E-48 | -1.69E-46 |
| MS.gene057915 | MS.gene75605 | 0.817565 | 3.09E-52 | -1.69E-46 |
| MS.gene058084 | MS.gene75605 | 0.815569 | 8.64E-52 | -1.69E-46 |
| MS.gene058126 | MS.gene75605 | 0.817544 | 3.12E-52 | -1.69E-46 |
| MS.gene058238 | MS.gene75605 | 0.824591 | 7.43E-54 | -1.69E-46 |
| MS.gene058292 | MS.gene75605 | 0.81889 | 1.55E-52 | -1.69E-46 |
| MS.gene058595 | MS.gene75605 | 0.803812 | 2.92E-49 | -1.69E-46 |
| MS.gene058646 | MS.gene75605 | 0.822433 | 2.38E-53 | -1.69E-46 |
| MS.gene058654 | MS.gene75605 | 0.810317 | 1.22E-50 | -1.69E-46 |
| MS.gene058906 | MS.gene75605 | 0.819128 | 1.37E-52 | -1.69E-46 |
| MS.gene058976 | MS.gene75605 | 0.856965 | 2.25E-62 | -1.69E-46 |
| MS.gene059146 | MS.gene75605 | 0.829718 | 4.40E-55 | -1.69E-46 |
| MS.gene059249 | MS.gene75605 | 0.815803 | 7.67E-52 | -1.69E-46 |
| MS.gene059360 | MS.gene75605 | 0.821217 | 4.54E-53 | -1.69E-46 |
| MS.gene059725 | MS.gene75605 | 0.804725 | 1.88E-49 | -1.69E-46 |
| MS.gene05978 | MS.gene75605 | 0.8107 | 1.01E-50 | -1.69E-46 |
| MS.gene059830 | MS.gene75605 | 0.823421 | 1.40E-53 | -1.69E-46 |
| MS.gene059842 | MS.gene75605 | 0.820505 | 6.62E-53 | -1.69E-46 |
| MS.gene06010 | MS.gene75605 | 0.833592 | 4.88E-56 | -1.69E-46 |
| MS.gene06011 | MS.gene75605 | 0.835394 | 1.72E-56 | -1.69E-46 |
| MS.gene060296 | MS.gene75605 | 0.832048 | 1.18E-55 | -1.69E-46 |
| MS.gene060429 | MS.gene75605 | 0.839629 | 1.41E-57 | -1.69E-46 |
| MS.gene060586 | MS.gene75605 | 0.811964 | 5.38E-51 | -1.69E-46 |
| MS.gene060637 | MS.gene75605 | 0.802064 | 6.70E-49 | -1.69E-46 |
| MS.gene060763 | MS.gene75605 | 0.810193 | 1.30E-50 | -1.69E-46 |
| MS.gene060803 | MS.gene75605 | 0.81634 | 5.82E-52 | -1.69E-46 |
| MS.gene060830 | MS.gene75605 | 0.805546 | 1.27E-49 | -1.69E-46 |
| MS.gene060907 | MS.gene75605 | 0.808937 | 2.42E-50 | -1.69E-46 |
| MS.gene060935 | MS.gene75605 | 0.812526 | 4.06E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75605.t1 | MTR_3g085410 | 95.567 | 203 | 7 | 1 | 1 | 201 | 1 | 203 | 3.00e-145 | 402 |
| MS.gene75605.t1 | MTR_6g024140 | 58.883 | 197 | 79 | 1 | 1 | 195 | 1 | 197 | 1.62e-81 | 241 |
| MS.gene75605.t1 | MTR_3g085420 | 46.617 | 133 | 43 | 4 | 1 | 130 | 6 | 113 | 1.33e-27 | 105 |
| MS.gene75605.t1 | MTR_6g044560 | 41.259 | 143 | 83 | 1 | 21 | 162 | 21 | 163 | 3.52e-25 | 102 |
| MS.gene75605.t1 | MTR_6g012540 | 38.760 | 129 | 70 | 3 | 7 | 132 | 6 | 128 | 4.89e-21 | 87.4 |
| MS.gene75605.t1 | MTR_6g016250 | 36.486 | 148 | 79 | 3 | 21 | 165 | 8 | 143 | 4.27e-18 | 78.2 |
| MS.gene75605.t1 | MTR_7g099160 | 36.420 | 162 | 97 | 4 | 1 | 159 | 3 | 161 | 1.67e-17 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75605.t1 | AT1G27390 | 51.415 | 212 | 86 | 2 | 1 | 199 | 1 | 208 | 3.06e-67 | 205 |
| MS.gene75605.t1 | AT3G27080 | 50.000 | 200 | 96 | 2 | 4 | 200 | 3 | 201 | 1.08e-65 | 201 |
| MS.gene75605.t1 | AT5G40930 | 49.735 | 189 | 83 | 3 | 10 | 198 | 9 | 185 | 2.68e-56 | 176 |
| MS.gene75605.t1 | AT3G27070 | 49.189 | 185 | 91 | 2 | 10 | 192 | 3 | 186 | 6.07e-52 | 166 |
| MS.gene75605.t1 | AT1G27390 | 51.923 | 156 | 58 | 2 | 57 | 199 | 1 | 152 | 3.54e-47 | 152 |
| MS.gene75605.t1 | AT5G40930 | 50.000 | 148 | 63 | 2 | 10 | 157 | 9 | 145 | 8.02e-41 | 136 |
| MS.gene75605.t1 | AT3G27070 | 45.522 | 134 | 70 | 2 | 61 | 192 | 114 | 246 | 1.42e-29 | 110 |
Find 55 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACCACGTCCACGGCTTTC+TGG | 0.157506 | 3.3:+71318060 | None:intergenic |
| TATACCTTCAATCATCTTCT+TGG | 0.230166 | 3.3:+71318358 | None:intergenic |
| TGGATCTCCATGTGTAGTTC+TGG | 0.244886 | 3.3:+71317146 | None:intergenic |
| CAACTAAGCATTACACTCTT+TGG | 0.293381 | 3.3:-71318172 | MS.gene75605:CDS |
| CATTACACTCTTTGGTGCTT+GGG | 0.335731 | 3.3:-71318164 | MS.gene75605:CDS |
| GTCCTTGAAAGTTGCTCTTA+AGG | 0.339410 | 3.3:-71317927 | MS.gene75605:intron |
| AAATTGTAGGATCCTGAAAA+TGG | 0.394779 | 3.3:-71317962 | MS.gene75605:intron |
| GCATTACACTCTTTGGTGCT+TGG | 0.415611 | 3.3:-71318165 | MS.gene75605:CDS |
| CTCTACTTCTTCAAAAGAAA+AGG | 0.419549 | 3.3:-71317087 | MS.gene75605:intron |
| GGATCTCCATGTGTAGTTCT+GGG | 0.432237 | 3.3:+71317147 | None:intergenic |
| TGTCGTCATGTCAAAATCCT+AGG | 0.435595 | 3.3:-71318385 | MS.gene75605:CDS |
| TACCTTAAGAGCAACTTTCA+AGG | 0.440828 | 3.3:+71317925 | None:intergenic |
| CCCTTTGCATCATTGAGATC+AGG | 0.441257 | 3.3:+71318110 | None:intergenic |
| CAAAGAGTGTAATGCTTAGT+TGG | 0.443652 | 3.3:+71318173 | None:intergenic |
| GGGAATGCCCTTACGTCTTG+TGG | 0.446978 | 3.3:-71318143 | MS.gene75605:CDS |
| ATTGGTCAGATGGGTGTTGG+AGG | 0.453286 | 3.3:-71317113 | MS.gene75605:CDS |
| GGGATTGGTCAGATGGGTGT+TGG | 0.463649 | 3.3:-71317116 | MS.gene75605:CDS |
| TGATGGTGGAATGTGAGATT+TGG | 0.471722 | 3.3:+71315946 | None:intergenic |
| AGATGCACGTACTAAGTTAG+AGG | 0.484397 | 3.3:-71318213 | MS.gene75605:CDS |
| GGCTTTCTGGAAATACTCAT+AGG | 0.488748 | 3.3:+71318073 | None:intergenic |
| TTTGTTTAACTAGGAGGTGA+TGG | 0.492447 | 3.3:+71315929 | None:intergenic |
| GGATGGGCTATTCTTGCAGC+AGG | 0.494623 | 3.3:-71315992 | MS.gene75605:CDS |
| TACATATGACTTGCTTGGAT+GGG | 0.500290 | 3.3:-71316008 | MS.gene75605:CDS |
| TCCTGATCTCAATGATGCAA+AGG | 0.503029 | 3.3:-71318111 | MS.gene75605:CDS |
| ACGAAATTTGTTTAACTAGG+AGG | 0.515471 | 3.3:+71315923 | None:intergenic |
| ATGACGAAATTTGTTTAACT+AGG | 0.517588 | 3.3:+71315920 | None:intergenic |
| TTAGAAATCCACAAGACGTA+AGG | 0.523225 | 3.3:+71318135 | None:intergenic |
| TATCAAAGCTTCTCCCCACT+TGG | 0.532053 | 3.3:+71318412 | None:intergenic |
| CCTGATCTCAATGATGCAAA+GGG | 0.533792 | 3.3:-71318110 | MS.gene75605:CDS |
| TTACATATGACTTGCTTGGA+TGG | 0.537551 | 3.3:-71316009 | MS.gene75605:CDS |
| ATTACACTCTTTGGTGCTTG+GGG | 0.538997 | 3.3:-71318163 | MS.gene75605:CDS |
| TTGCAGCAGGTATAGTAGCA+TGG | 0.555539 | 3.3:-71315979 | MS.gene75605:CDS |
| TTGGTCAGATGGGTGTTGGA+GGG | 0.555646 | 3.3:-71317112 | MS.gene75605:CDS |
| GAGTTTACATATGACTTGCT+TGG | 0.556692 | 3.3:-71316013 | MS.gene75605:CDS |
| GAGTTTACAGAAGAGGACTT+TGG | 0.558515 | 3.3:-71319112 | MS.gene75605:CDS |
| TATACAGAATTTGACCAAGT+GGG | 0.558546 | 3.3:-71318426 | MS.gene75605:intron |
| TGCAGCAGGTATAGTAGCAT+GGG | 0.559855 | 3.3:-71315978 | MS.gene75605:CDS |
| TTTCCAGAAAGCCGTGGACG+TGG | 0.560267 | 3.3:-71318063 | MS.gene75605:intron |
| GATTCCAAGAAGATGATTGA+AGG | 0.565529 | 3.3:-71318362 | MS.gene75605:intron |
| ATCATCTTCTTGGAATCCCT+AGG | 0.572172 | 3.3:+71318368 | None:intergenic |
| GTCGTCATGTCAAAATCCTA+GGG | 0.579581 | 3.3:-71318384 | MS.gene75605:CDS |
| TTACAGAAGAGGACTTTGGT+AGG | 0.589326 | 3.3:-71319108 | MS.gene75605:CDS |
| ATACAGAATTTGACCAAGTG+GGG | 0.589820 | 3.3:-71318425 | MS.gene75605:intron |
| GTTTAACTAGGAGGTGATGG+TGG | 0.591003 | 3.3:+71315932 | None:intergenic |
| TATAGTAGCATGGGTAGCAA+TGG | 0.598058 | 3.3:-71315969 | MS.gene75605:CDS |
| GATCTCCATGTGTAGTTCTG+GGG | 0.602901 | 3.3:+71317148 | None:intergenic |
| GAATATGGAGTTTACAGAAG+AGG | 0.610061 | 3.3:-71319119 | None:intergenic |
| TAGAAATCCACAAGACGTAA+GGG | 0.618493 | 3.3:+71318136 | None:intergenic |
| ATACGTACATCAGCGTCAAG+AGG | 0.633313 | 3.3:+71319031 | None:intergenic |
| CAAATACATTACCACGTCCA+CGG | 0.637087 | 3.3:+71318052 | None:intergenic |
| GAACAATCGCAAAACAGCTG+AGG | 0.642911 | 3.3:-71319071 | MS.gene75605:CDS |
| TGAGTATTTCCAGAAAGCCG+TGG | 0.652801 | 3.3:-71318069 | MS.gene75605:CDS |
| TGCACGTACTAAGTTAGAGG+AGG | 0.671211 | 3.3:-71318210 | MS.gene75605:CDS |
| TTATACAGAATTTGACCAAG+TGG | 0.672936 | 3.3:-71318427 | MS.gene75605:intron |
| ATAGGCCCCAGAACTACACA+TGG | 0.676465 | 3.3:-71317153 | MS.gene75605:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAAAACTAAATAAATTATT+AGG | - | chr3.3:71317468-71317487 | MS.gene75605:intron | 10.0% |
| !! | TTAGTTAAAAAATGAATTTA+AGG | + | chr3.3:71316410-71316429 | None:intergenic | 10.0% |
| !!! | TTTTTTAACTAAATTCAATT+CGG | - | chr3.3:71316418-71316437 | MS.gene75605:intron | 10.0% |
| !! | AAGGTAAAATAATTTATGTT+TGG | + | chr3.3:71316391-71316410 | None:intergenic | 15.0% |
| !! | ATAAATCATTCTACTTAAAT+AGG | + | chr3.3:71316521-71316540 | None:intergenic | 15.0% |
| !! | ATGATTTATGCATAAATAAT+AGG | + | chr3.3:71318183-71318202 | None:intergenic | 15.0% |
| !! | CAATATTTATAGAAAGTTCA+AGG | + | chr3.3:71317815-71317834 | None:intergenic | 20.0% |
| !! | CTTATAAAGCATGTTAATAA+TGG | + | chr3.3:71317705-71317724 | None:intergenic | 20.0% |
| !! | GAAAAGTTTAAGTGATATTA+AGG | - | chr3.3:71317573-71317592 | MS.gene75605:intron | 20.0% |
| !! | GTGCTAATATTTAATCTAAT+GGG | - | chr3.3:71318301-71318320 | MS.gene75605:intron | 20.0% |
| !! | TAATATTTAATCTAATGGGA+AGG | - | chr3.3:71318305-71318324 | MS.gene75605:intron | 20.0% |
| !! | TTAAAATGCTAAAACTCAAA+TGG | - | chr3.3:71318095-71318114 | MS.gene75605:CDS | 20.0% |
| !! | TTATTTATGCATAAATCATG+CGG | - | chr3.3:71318184-71318203 | MS.gene75605:CDS | 20.0% |
| !! | TTCTTGAAGTTTATTAATTG+CGG | - | chr3.3:71317058-71317077 | MS.gene75605:intron | 20.0% |
| !!! | ATTAAAAGCATATTTACCAA+CGG | + | chr3.3:71316214-71316233 | None:intergenic | 20.0% |
| !!! | TGAGTTTTAGCATTTTAAAA+TGG | + | chr3.3:71318093-71318112 | None:intergenic | 20.0% |
| ! | ACAGAAGGAGAATAATTATT+AGG | + | chr3.3:71318663-71318682 | None:intergenic | 25.0% |
| ! | AGAAGATGAATTAAACTTGT+TGG | + | chr3.3:71317359-71317378 | None:intergenic | 25.0% |
| ! | ATCAAATTCTAATAAACCTG+AGG | + | chr3.3:71316259-71316278 | None:intergenic | 25.0% |
| ! | CAAAAAAAATTAAGTCTGCT+AGG | + | chr3.3:71318834-71318853 | None:intergenic | 25.0% |
| ! | CAGATACAATTTCAAAACAA+TGG | + | chr3.3:71317170-71317189 | None:intergenic | 25.0% |
| ! | CATGAAATCTAAAAAACAGA+AGG | + | chr3.3:71318678-71318697 | None:intergenic | 25.0% |
| ! | CGTGCTAATATTTAATCTAA+TGG | - | chr3.3:71318300-71318319 | MS.gene75605:intron | 25.0% |
| ! | GTTTGTTCTATAAATCACAA+CGG | - | chr3.3:71317493-71317512 | MS.gene75605:intron | 25.0% |
| ! | TCATTATAGATAGAGATGAT+TGG | + | chr3.3:71318915-71318934 | None:intergenic | 25.0% |
| ! | TTCATCTTCTATTTACTACA+TGG | - | chr3.3:71317369-71317388 | MS.gene75605:intron | 25.0% |
| !! | ACATGCTTTATAAGTTTTTC+TGG | - | chr3.3:71317711-71317730 | MS.gene75605:intron | 25.0% |
| !! | TTCAAAGTACTATCACAATT+TGG | - | chr3.3:71318529-71318548 | MS.gene75605:intron | 25.0% |
| !!! | AGGTTTATTCTAAAACTACA+AGG | + | chr3.3:71316239-71316258 | None:intergenic | 25.0% |
| !!! | AGTTATTTTCTCTTTTGTGA+AGG | - | chr3.3:71316746-71316765 | MS.gene75605:intron | 25.0% |
| !!! | TGATTATTGTGTGTTTTGAT+GGG | - | chr3.3:71316790-71316809 | MS.gene75605:intron | 25.0% |
| !!! | TGTTTTTTAGATTTCATGTG+CGG | - | chr3.3:71318680-71318699 | MS.gene75605:intron | 25.0% |
| !!! | TTGATTATTGTGTGTTTTGA+TGG | - | chr3.3:71316789-71316808 | MS.gene75605:intron | 25.0% |
| !!! | TTTATAAGTTTTTCTGGTCA+AGG | - | chr3.3:71317717-71317736 | MS.gene75605:intron | 25.0% |
| !!! | TTTTCTTTTGAAGAAGTAGA+GGG | + | chr3.3:71317963-71317982 | None:intergenic | 25.0% |
| AAAAGAAATCCTCACGAATT+CGG | + | chr3.3:71316108-71316127 | None:intergenic | 30.0% | |
| AAATTGTAGGATCCTGAAAA+TGG | - | chr3.3:71317087-71317106 | MS.gene75605:intron | 30.0% | |
| AATTAGACAACATGTTCTAG+AGG | - | chr3.3:71318405-71318424 | MS.gene75605:CDS | 30.0% | |
| ACTAAATTCAATTCGGTAGT+TGG | - | chr3.3:71316425-71316444 | MS.gene75605:intron | 30.0% | |
| ACTTCTTCAAAAGAAAAGGT+TGG | - | chr3.3:71317966-71317985 | MS.gene75605:intron | 30.0% | |
| AGAAGAGTAGTATAGTTCAA+AGG | + | chr3.3:71318765-71318784 | None:intergenic | 30.0% | |
| AGCCATAAAAAAAGTCGTTT+AGG | - | chr3.3:71316491-71316510 | MS.gene75605:intron | 30.0% | |
| ATGATACTGCAGTTAGAATT+GGG | - | chr3.3:71318570-71318589 | MS.gene75605:intron | 30.0% | |
| CTCTACTTCTTCAAAAGAAA+AGG | - | chr3.3:71317962-71317981 | MS.gene75605:intron | 30.0% | |
| GTCTTTGTCTCATTACAATA+CGG | - | chr3.3:71316180-71316199 | MS.gene75605:intron | 30.0% | |
| TAGAGGGATAAAATGATGTT+AGG | - | chr3.3:71318422-71318441 | MS.gene75605:CDS | 30.0% | |
| TATACAGAATTTGACCAAGT+GGG | - | chr3.3:71316623-71316642 | MS.gene75605:intron | 30.0% | |
| TATACCTTCAATCATCTTCT+TGG | + | chr3.3:71316694-71316713 | None:intergenic | 30.0% | |
| TATCTGTTAACAGCATTGTT+TGG | - | chr3.3:71318979-71318998 | MS.gene75605:intron | 30.0% | |
| TATGATACTGCAGTTAGAAT+TGG | - | chr3.3:71318569-71318588 | MS.gene75605:intron | 30.0% | |
| TCAAACAATTTAAGTCTGCT+AGG | + | chr3.3:71318863-71318882 | None:intergenic | 30.0% | |
| TCACAAATACTAACTGTAAC+TGG | - | chr3.3:71318032-71318051 | MS.gene75605:intron | 30.0% | |
| TTATACAGAATTTGACCAAG+TGG | - | chr3.3:71316622-71316641 | MS.gene75605:intron | 30.0% | |
| TTGGACCTGCATATAATTTA+CGG | + | chr3.3:71318503-71318522 | None:intergenic | 30.0% | |
| TTTACTACATGGTTTATCTG+AGG | - | chr3.3:71317380-71317399 | MS.gene75605:intron | 30.0% | |
| ! | ATTAGACAACATGTTCTAGA+GGG | - | chr3.3:71318406-71318425 | MS.gene75605:CDS | 30.0% |
| ! | GGAATTGATTTAGTTCACAA+AGG | - | chr3.3:71317655-71317674 | MS.gene75605:intron | 30.0% |
| ! | TTGATTTAGTTCACAAAGGT+TGG | - | chr3.3:71317659-71317678 | MS.gene75605:intron | 30.0% |
| !! | ATGCGTTTTGTTCAGTTTTA+TGG | + | chr3.3:71316569-71316588 | None:intergenic | 30.0% |
| !! | CTTTTCTTTTGAAGAAGTAG+AGG | + | chr3.3:71317964-71317983 | None:intergenic | 30.0% |
| !! | TGGTTTATCTGAGGTTTTAA+TGG | - | chr3.3:71317389-71317408 | MS.gene75605:intron | 30.0% |
| !!! | GACCTAAACGACTTTTTTTA+TGG | + | chr3.3:71316496-71316515 | None:intergenic | 30.0% |
| !!! | GTAGTTTTAGAATAAACCTC+AGG | - | chr3.3:71316240-71316259 | MS.gene75605:intron | 30.0% |
| !!! | TTGGCACTTCTTTTTTATCT+TGG | - | chr3.3:71318232-71318251 | MS.gene75605:intron | 30.0% |
| AAATGCTATTCCAAATGGGA+AGG | + | chr3.3:71318214-71318233 | None:intergenic | 35.0% | |
| ACATGGAGATCCACAAAAAT+GGG | - | chr3.3:71317913-71317932 | MS.gene75605:intron | 35.0% | |
| ATACAGAATTTGACCAAGTG+GGG | - | chr3.3:71316624-71316643 | MS.gene75605:intron | 35.0% | |
| ATAGTACTTTGAACGACACT+TGG | + | chr3.3:71318522-71318541 | None:intergenic | 35.0% | |
| CAACTAAGCATTACACTCTT+TGG | - | chr3.3:71316877-71316896 | MS.gene75605:intron | 35.0% | |
| GATTCCAAGAAGATGATTGA+AGG | - | chr3.3:71316687-71316706 | MS.gene75605:intron | 35.0% | |
| GGGTTTGTATTTGCAAACAA+GGG | - | chr3.3:71318590-71318609 | MS.gene75605:intron | 35.0% | |
| GTTTGTAAACCATGTCTCAT+AGG | - | chr3.3:71317878-71317897 | MS.gene75605:intron | 35.0% | |
| TAAAACTACCTTGTCTACTC+TGG | - | chr3.3:71317245-71317264 | MS.gene75605:intron | 35.0% | |
| TAAATAAAACCCGCAGTATC+TGG | + | chr3.3:71317528-71317547 | None:intergenic | 35.0% | |
| TACCTTAAGAGCAACTTTCA+AGG | + | chr3.3:71317127-71317146 | None:intergenic | 35.0% | |
| TAGAAATCCACAAGACGTAA+GGG | + | chr3.3:71316916-71316935 | None:intergenic | 35.0% | |
| TCTTGTTCTGTGGATGTAAA+TGG | - | chr3.3:71318121-71318140 | MS.gene75605:CDS | 35.0% | |
| TGCCAAATGCTATTCCAAAT+GGG | + | chr3.3:71318218-71318237 | None:intergenic | 35.0% | |
| TGGGTTTGTATTTGCAAACA+AGG | - | chr3.3:71318589-71318608 | MS.gene75605:intron | 35.0% | |
| TGTAAATGGTTGTTGCCATT+AGG | - | chr3.3:71318135-71318154 | MS.gene75605:CDS | 35.0% | |
| TTAGAAATCCACAAGACGTA+AGG | + | chr3.3:71316917-71316936 | None:intergenic | 35.0% | |
| ! | AGCATTGTTTGGTTCATTTC+AGG | - | chr3.3:71318990-71319009 | MS.gene75605:intron | 35.0% |
| ! | CAAAGAGTGTAATGCTTAGT+TGG | + | chr3.3:71316879-71316898 | None:intergenic | 35.0% |
| ! | CATGTCATGTTTTCGGATAT+TGG | - | chr3.3:71318792-71318811 | MS.gene75605:intron | 35.0% |
| ! | TGCACGTGATTTTATTCTCA+TGG | - | chr3.3:71317188-71317207 | MS.gene75605:intron | 35.0% |
| ! | TTCCCATTTGGAATAGCATT+TGG | - | chr3.3:71318213-71318232 | MS.gene75605:CDS | 35.0% |
| !! | AAAAATGGGATTGGTCAGAT+GGG | - | chr3.3:71317927-71317946 | MS.gene75605:intron | 35.0% |
| !! | ATGTTATTTCCGAATTCGTG+AGG | - | chr3.3:71316096-71316115 | MS.gene75605:intron | 35.0% |
| !! | ATTGCGGATTCTGAAATTGT+AGG | - | chr3.3:71317074-71317093 | MS.gene75605:intron | 35.0% |
| !! | GAGTTTACATATGACTTGCT+TGG | - | chr3.3:71319036-71319055 | MS.gene75605:intron | 35.0% |
| !! | TACATATGACTTGCTTGGAT+GGG | - | chr3.3:71319041-71319060 | MS.gene75605:CDS | 35.0% |
| !! | TCACAAAGGTTGGTGAAAAT+TGG | - | chr3.3:71317669-71317688 | MS.gene75605:intron | 35.0% |
| !! | TTACATATGACTTGCTTGGA+TGG | - | chr3.3:71319040-71319059 | MS.gene75605:CDS | 35.0% |
| !!! | AATTGGAAGTGTTGACCTTT+TGG | - | chr3.3:71317279-71317298 | MS.gene75605:intron | 35.0% |
| !!! | CTCTGGTTTTTAGCTGAAAT+TGG | - | chr3.3:71317262-71317281 | MS.gene75605:intron | 35.0% |
| !!! | GATACTGCGGGTTTTATTTA+TGG | - | chr3.3:71317528-71317547 | MS.gene75605:intron | 35.0% |
| AGATGCACGTACTAAGTTAG+AGG | - | chr3.3:71316836-71316855 | MS.gene75605:intron | 40.0% | |
| ATCATCTTCTTGGAATCCCT+AGG | + | chr3.3:71316684-71316703 | None:intergenic | 40.0% | |
| ATTCCAGCAATGCATGATGA+TGG | + | chr3.3:71317640-71317659 | None:intergenic | 40.0% | |
| CAAATACATTACCACGTCCA+CGG | + | chr3.3:71317000-71317019 | None:intergenic | 40.0% | |
| CAAATGGAGTTCTTGTTCTG+TGG | - | chr3.3:71318111-71318130 | MS.gene75605:CDS | 40.0% | |
| CAATACGGAAATTTCACCGT+TGG | - | chr3.3:71316195-71316214 | MS.gene75605:intron | 40.0% | |
| CACATGGAGATCCACAAAAA+TGG | - | chr3.3:71317912-71317931 | MS.gene75605:intron | 40.0% | |
| CCTGATCTCAATGATGCAAA+GGG | - | chr3.3:71316939-71316958 | MS.gene75605:intron | 40.0% | |
| CTGTGACTCTATCAACCAAA+AGG | + | chr3.3:71317297-71317316 | None:intergenic | 40.0% | |
| GAGATCCACAAAAATGGGAT+TGG | - | chr3.3:71317918-71317937 | MS.gene75605:intron | 40.0% | |
| GAGTTTACAGAAGAGGACTT+TGG | - | chr3.3:71315937-71315956 | MS.gene75605:CDS | 40.0% | |
| GCCTCAAATTTGGATGTACA+AGG | - | chr3.3:71318157-71318176 | MS.gene75605:CDS | 40.0% | |
| GCCTTGTACATCCAAATTTG+AGG | + | chr3.3:71318161-71318180 | None:intergenic | 40.0% | |
| GCTAAAAACCAGAGTAGACA+AGG | + | chr3.3:71317256-71317275 | None:intergenic | 40.0% | |
| GGTCATGTCAGTCAAGTATA+AGG | - | chr3.3:71318053-71318072 | MS.gene75605:intron | 40.0% | |
| GTCAGTCAAGTATAAGGACA+TGG | - | chr3.3:71318059-71318078 | MS.gene75605:intron | 40.0% | |
| GTCCTTGAAAGTTGCTCTTA+AGG | - | chr3.3:71317122-71317141 | MS.gene75605:CDS | 40.0% | |
| GTCGTCATGTCAAAATCCTA+GGG | - | chr3.3:71316665-71316684 | MS.gene75605:intron | 40.0% | |
| GTGCCAAATGCTATTCCAAA+TGG | + | chr3.3:71318219-71318238 | None:intergenic | 40.0% | |
| GTGTGCCGTAAATTATATGC+AGG | - | chr3.3:71318495-71318514 | MS.gene75605:intron | 40.0% | |
| TATAGTAGCATGGGTAGCAA+TGG | - | chr3.3:71319080-71319099 | MS.gene75605:CDS | 40.0% | |
| TATCCGAAAACATGACATGC+TGG | + | chr3.3:71318791-71318810 | None:intergenic | 40.0% | |
| TCCTGATCTCAATGATGCAA+AGG | - | chr3.3:71316938-71316957 | MS.gene75605:intron | 40.0% | |
| TCTAACTTAGTACGTGCATC+TGG | + | chr3.3:71316837-71316856 | None:intergenic | 40.0% | |
| TCTTGTCGATCAACGTTGTA+TGG | - | chr3.3:71318613-71318632 | MS.gene75605:intron | 40.0% | |
| TGGCAGTAGAGAACTACTTT+AGG | + | chr3.3:71317339-71317358 | None:intergenic | 40.0% | |
| TGTCGTCATGTCAAAATCCT+AGG | - | chr3.3:71316664-71316683 | MS.gene75605:intron | 40.0% | |
| TTACAGAAGAGGACTTTGGT+AGG | - | chr3.3:71315941-71315960 | MS.gene75605:CDS | 40.0% | |
| TTGCCATTAGGCCTCAAATT+TGG | - | chr3.3:71318147-71318166 | MS.gene75605:CDS | 40.0% | |
| ! | ACTCCAGCATGTCATGTTTT+CGG | - | chr3.3:71318785-71318804 | MS.gene75605:intron | 40.0% |
| ! | CATCCAAATTTGAGGCCTAA+TGG | + | chr3.3:71318153-71318172 | None:intergenic | 40.0% |
| ! | GGCTTTCTGGAAATACTCAT+AGG | + | chr3.3:71316979-71316998 | None:intergenic | 40.0% |
| ! | TACGTGCATCTGGAATTAGT+TGG | + | chr3.3:71316827-71316846 | None:intergenic | 40.0% |
| ! | TGTCTGTAGAGACCATTTTC+AGG | + | chr3.3:71317102-71317121 | None:intergenic | 40.0% |
| !! | AGCTGTTTTGCGATTGTTCT+CGG | + | chr3.3:71315977-71315996 | None:intergenic | 40.0% |
| !! | ATTACACTCTTTGGTGCTTG+GGG | - | chr3.3:71316886-71316905 | MS.gene75605:intron | 40.0% |
| !! | CAAAAATGGGATTGGTCAGA+TGG | - | chr3.3:71317926-71317945 | MS.gene75605:intron | 40.0% |
| !! | CATTACACTCTTTGGTGCTT+GGG | - | chr3.3:71316885-71316904 | MS.gene75605:intron | 40.0% |
| !! | TCTGACCAATCCCATTTTTG+TGG | + | chr3.3:71317926-71317945 | None:intergenic | 40.0% |
| !! | TGATGGTGGAATGTGAGATT+TGG | + | chr3.3:71319106-71319125 | None:intergenic | 40.0% |
| !! | TGCAAAGGGTCATTTTGACA+AGG | - | chr3.3:71316953-71316972 | MS.gene75605:intron | 40.0% |
| !!! | ACGACTTTTTTTATGGCTCG+TGG | + | chr3.3:71316489-71316508 | None:intergenic | 40.0% |
| AAACCCGCAGTATCTGGTAT+AGG | + | chr3.3:71317522-71317541 | None:intergenic | 45.0% | |
| ATACGTACATCAGCGTCAAG+AGG | + | chr3.3:71316021-71316040 | None:intergenic | 45.0% | |
| CAGTATCATACGCAGCTAGA+TGG | + | chr3.3:71318559-71318578 | None:intergenic | 45.0% | |
| CCCTTTGCATCATTGAGATC+AGG | + | chr3.3:71316942-71316961 | None:intergenic | 45.0% | |
| GAACAATCGCAAAACAGCTG+AGG | - | chr3.3:71315978-71315997 | MS.gene75605:CDS | 45.0% | |
| GGATCTCCATGTGTAGTTCT+GGG | + | chr3.3:71317905-71317924 | None:intergenic | 45.0% | |
| GGCTAATGTGCTACACTGTA+GGG | - | chr3.3:71317549-71317568 | MS.gene75605:intron | 45.0% | |
| TATCAAAGCTTCTCCCCACT+TGG | + | chr3.3:71316640-71316659 | None:intergenic | 45.0% | |
| TGAGTATTTCCAGAAAGCCG+TGG | - | chr3.3:71316980-71316999 | MS.gene75605:intron | 45.0% | |
| TGCACGTACTAAGTTAGAGG+AGG | - | chr3.3:71316839-71316858 | MS.gene75605:intron | 45.0% | |
| TGCAGCAGGTATAGTAGCAT+GGG | - | chr3.3:71319071-71319090 | MS.gene75605:CDS | 45.0% | |
| TGGATCTCCATGTGTAGTTC+TGG | + | chr3.3:71317906-71317925 | None:intergenic | 45.0% | |
| TGGCTAATGTGCTACACTGT+AGG | - | chr3.3:71317548-71317567 | MS.gene75605:intron | 45.0% | |
| TTGCAGCAGGTATAGTAGCA+TGG | - | chr3.3:71319070-71319089 | MS.gene75605:CDS | 45.0% | |
| TTGCCATCATCATGCATTGC+TGG | - | chr3.3:71317634-71317653 | MS.gene75605:intron | 45.0% | |
| ! | GATCTCCATGTGTAGTTCTG+GGG | + | chr3.3:71317904-71317923 | None:intergenic | 45.0% |
| ! | TTCTAAGAGACACGCTCTTC+AGG | - | chr3.3:71318275-71318294 | MS.gene75605:intron | 45.0% |
| !! | GCATTACACTCTTTGGTGCT+TGG | - | chr3.3:71316884-71316903 | MS.gene75605:intron | 45.0% |
| !! | TAAAAGAAATATAAATAATT+AGG | + | chr3.3:71316066-71316085 | None:intergenic | 5.0% |
| ATAGGCCCCAGAACTACACA+TGG | - | chr3.3:71317896-71317915 | MS.gene75605:intron | 50.0% | |
| CCACCTATACCAGATACTGC+GGG | - | chr3.3:71317516-71317535 | MS.gene75605:intron | 50.0% | |
| GCACACAAACAGACACAACG+CGG | + | chr3.3:71318481-71318500 | None:intergenic | 50.0% | |
| GCCACCTATACCAGATACTG+CGG | - | chr3.3:71317515-71317534 | MS.gene75605:intron | 50.0% | |
| TGGATCCATGCTTCACTAGC+TGG | - | chr3.3:71316445-71316464 | MS.gene75605:intron | 50.0% | |
| ! | ATGCGGATTGCCTTCCCATT+TGG | - | chr3.3:71318201-71318220 | MS.gene75605:CDS | 50.0% |
| !! | ATTGGTCAGATGGGTGTTGG+AGG | - | chr3.3:71317936-71317955 | MS.gene75605:CDS | 50.0% |
| !! | TTGGTCAGATGGGTGTTGGA+GGG | - | chr3.3:71317937-71317956 | MS.gene75605:CDS | 50.0% |
| CCCGCAGTATCTGGTATAGG+TGG | + | chr3.3:71317519-71317538 | None:intergenic | 55.0% | |
| GGGAATGCCCTTACGTCTTG+TGG | - | chr3.3:71316906-71316925 | MS.gene75605:intron | 55.0% | |
| TTACCACGTCCACGGCTTTC+TGG | + | chr3.3:71316992-71317011 | None:intergenic | 55.0% | |
| TTTCCAGAAAGCCGTGGACG+TGG | - | chr3.3:71316986-71317005 | MS.gene75605:intron | 55.0% | |
| !! | GGATGGGCTATTCTTGCAGC+AGG | - | chr3.3:71319057-71319076 | MS.gene75605:CDS | 55.0% |
| !! | GGGATTGGTCAGATGGGTGT+TGG | - | chr3.3:71317933-71317952 | MS.gene75605:CDS | 55.0% |
| !! | GTTCTGGGGCCTATGAGACA+TGG | + | chr3.3:71317890-71317909 | None:intergenic | 55.0% |
| CGACGCCAGCTAGTGAAGCA+TGG | + | chr3.3:71316453-71316472 | None:intergenic | 60.0% | |
| TGCTTCACTAGCTGGCGTCG+CGG | - | chr3.3:71316453-71316472 | MS.gene75605:intron | 60.0% | |
| GCTTCACTAGCTGGCGTCGC+GGG | - | chr3.3:71316454-71316473 | MS.gene75605:intron | 65.0% | |
| CACTAGCTGGCGTCGCGGGA+TGG | - | chr3.3:71316458-71316477 | MS.gene75605:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 71315934 | 71319137 | 71315934 | ID=MS.gene75605 |
| chr3.3 | mRNA | 71315934 | 71319137 | 71315934 | ID=MS.gene75605.t1;Parent=MS.gene75605 |
| chr3.3 | exon | 71319039 | 71319137 | 71319039 | ID=MS.gene75605.t1.exon1;Parent=MS.gene75605.t1 |
| chr3.3 | CDS | 71319039 | 71319137 | 71319039 | ID=cds.MS.gene75605.t1;Parent=MS.gene75605.t1 |
| chr3.3 | exon | 71318363 | 71318441 | 71318363 | ID=MS.gene75605.t1.exon2;Parent=MS.gene75605.t1 |
| chr3.3 | CDS | 71318363 | 71318441 | 71318363 | ID=cds.MS.gene75605.t1;Parent=MS.gene75605.t1 |
| chr3.3 | exon | 71318064 | 71318233 | 71318064 | ID=MS.gene75605.t1.exon3;Parent=MS.gene75605.t1 |
| chr3.3 | CDS | 71318064 | 71318233 | 71318064 | ID=cds.MS.gene75605.t1;Parent=MS.gene75605.t1 |
| chr3.3 | exon | 71317928 | 71317975 | 71317928 | ID=MS.gene75605.t1.exon4;Parent=MS.gene75605.t1 |
| chr3.3 | CDS | 71317928 | 71317975 | 71317928 | ID=cds.MS.gene75605.t1;Parent=MS.gene75605.t1 |
| chr3.3 | exon | 71317088 | 71317171 | 71317088 | ID=MS.gene75605.t1.exon5;Parent=MS.gene75605.t1 |
| chr3.3 | CDS | 71317088 | 71317171 | 71317088 | ID=cds.MS.gene75605.t1;Parent=MS.gene75605.t1 |
| chr3.3 | exon | 71315934 | 71316059 | 71315934 | ID=MS.gene75605.t1.exon6;Parent=MS.gene75605.t1 |
| chr3.3 | CDS | 71315934 | 71316059 | 71315934 | ID=cds.MS.gene75605.t1;Parent=MS.gene75605.t1 |
| Gene Sequence |
| Protein sequence |
