AlfalfaGEDB | MS.gene79884

M. sativa cultivar XinJiangDaYe / MS.gene79884

KEGG: K13113
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00240.26

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79884.t1	XP_003601666.1	100	73	0	0	1	73	1	73	5.70E-34	152.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79884.t1	Q9FGZ9	94.5	73	4	0	1	73	1	73	3.7e-34	144.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79884.t1	G7JAQ0	100.0	73	0	0	1	73	1	73	4.1e-34	152.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene79884	0.862711	4.18E-64	-1.69E-46
MS.gene049255	MS.gene79884	0.815013	1.15E-51	-1.69E-46
MS.gene049378	MS.gene79884	0.808105	3.65E-50	-1.69E-46
MS.gene049382	MS.gene79884	0.832767	7.84E-56	-1.69E-46
MS.gene049424	MS.gene79884	0.825778	3.89E-54	-1.69E-46
MS.gene049653	MS.gene79884	0.806754	7.05E-50	-1.69E-46
MS.gene049756	MS.gene79884	0.814788	1.29E-51	-1.69E-46
MS.gene04984	MS.gene79884	0.800625	1.32E-48	-1.69E-46
MS.gene050277	MS.gene79884	0.814813	1.27E-51	-1.69E-46
MS.gene050605	MS.gene79884	0.805114	1.56E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene028709	MS.gene79884	PPI
MS.gene074354	MS.gene79884	PPI
MS.gene75680	MS.gene79884	PPI
MS.gene79884	MS.gene045369	PPI
MS.gene79884	MS.gene028709	PPI
MS.gene79884	MS.gene31284	PPI
MS.gene79884	MS.gene028711	PPI
MS.gene79884	MS.gene058936	PPI
MS.gene79884	MS.gene77522	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79884.t1	MTR_3g084140	100.000	73	0	0	1	73	1	73	6.86e-49	148

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene79884.t1	AT5G42300	94.521	73	4	1	73	1	73	1.07e-45	140
MS.gene79884.t1	AT3G45180	90.411	73	7	1	73	1	73	2.19e-44	137
MS.gene79884.t1	AT3G45180	90.411	73	7	1	73	1	73	2.19e-44	137

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Find 22 sgRNAs with CRISPR-Local

Find 21 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCTGGTGGCTGCTCAGAC+CGG	0.532945	3.1:-65492461	MS.gene79884:CDS
AATTCGGATCTTGTCAGCCC+TGG	0.475569	3.1:+65492436	None:intergenic
ACAAGATCCGAATTCAGAAG+TGG	0.640248	3.1:-65492427	MS.gene79884:CDS
AGTGATGTGATCCTTGTAGA+TGG	0.540415	3.1:+65492400	None:intergenic
CGGTGATTTGAAGAAGCTGG+TGG	0.708874	3.1:-65492474	MS.gene79884:CDS
CTACGCTACGAAGATGATTG+AGG	0.594624	3.1:-65492558	None:intergenic
GAACGATCGATTGGGGAAGA+AGG	0.524636	3.1:-65492528	MS.gene79884:CDS
GAAGTGGTACACCATCTACA+AGG	0.616793	3.1:-65492411	MS.gene79884:CDS
GATCGGTGATTTGAAGAAGC+TGG	0.556890	3.1:-65492477	MS.gene79884:CDS
GATCTTGTCAGCCCTGGTTC+CGG	0.386948	3.1:+65492442	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAAGATCCGAATTCAGAAG+TGG	-	chr3.1:65492464-65492483	MS.gene79884:CDS	40.0%
AGTGATGTGATCCTTGTAGA+TGG	+	chr3.1:65492494-65492513	None:intergenic	40.0%
TACAAGGATCACATCACTCT+CGG	-	chr3.1:65492496-65492515	MS.gene79884:CDS	40.0%
TGGTGTACCACTTCTGAATT+CGG	+	chr3.1:65492474-65492493	None:intergenic	40.0%
GAAGTGGTACACCATCTACA+AGG	-	chr3.1:65492480-65492499	MS.gene79884:CDS	45.0%
GATCGGTGATTTGAAGAAGC+TGG	-	chr3.1:65492414-65492433	MS.gene79884:CDS	45.0%
GGTGATTACGAGATCCATGA+TGG	-	chr3.1:65492517-65492536	MS.gene79884:CDS	45.0%
TACGAGATCCATGATGGCAT+GGG	-	chr3.1:65492523-65492542	MS.gene79884:CDS	45.0%
TGCAACTCAGATGACACGAT+CGG	-	chr3.1:65492397-65492416	MS.gene79884:CDS	45.0%
TTACGAGATCCATGATGGCA+TGG	-	chr3.1:65492522-65492541	MS.gene79884:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	65492346	65492567	65492346	ID=MS.gene79884
chr3.1	mRNA	65492346	65492567	65492346	ID=MS.gene79884.t1;Parent=MS.gene79884
chr3.1	exon	65492346	65492567	65492346	ID=MS.gene79884.t1.exon1;Parent=MS.gene79884.t1
chr3.1	CDS	65492346	65492567	65492346	ID=cds.MS.gene79884.t1;Parent=MS.gene79884.t1

Gene Sequence	>MS.gene79884 ATGATTGAGGTTGTTCTGAACGATCGATTGGGGAAGAAGGTTCGCGTGAAGTGCAACTCAGATGACACGATCGGTGATTTGAAGAAGCTGGTGGCTGCTCAGACCGGAACCAGGGCTGACAAGATCCGAATTCAGAAGTGGTACACCATCTACAAGGATCACATCACTCTCGGTGATTACGAGATCCATGATGGCATGGGTCTTGAACTCTACTACAACTAA
Protein sequence	>MS.gene79884.t1 MIEVVLNDRLGKKVRVKCNSDDTIGDLKKLVAAQTGTRADKIRIQKWYTIYKDHITLGDYEIHDGMGLELYYN