Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87264.t1 | XP_003596575.2 | 96.3 | 188 | 7 | 0 | 1 | 188 | 68 | 255 | 5.80E-107 | 396.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87264.t1 | Q9FIT9 | 59.6 | 178 | 67 | 3 | 7 | 179 | 9 | 186 | 7.3e-58 | 224.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87264.t1 | G7IHD0 | 96.3 | 188 | 7 | 0 | 1 | 188 | 1 | 188 | 4.2e-107 | 396.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene87264 | 0.802802 | 4.72E-49 | -1.69E-46 |
| MS.gene049159 | MS.gene87264 | 0.824853 | 6.44E-54 | -1.69E-46 |
| MS.gene049233 | MS.gene87264 | 0.802221 | 6.22E-49 | -1.69E-46 |
| MS.gene049378 | MS.gene87264 | 0.837554 | 4.86E-57 | -1.69E-46 |
| MS.gene049382 | MS.gene87264 | 0.80652 | 7.90E-50 | -1.69E-46 |
| MS.gene049435 | MS.gene87264 | 0.80285 | 4.61E-49 | -1.69E-46 |
| MS.gene04984 | MS.gene87264 | 0.82344 | 1.38E-53 | -1.69E-46 |
| MS.gene049919 | MS.gene87264 | 0.808718 | 2.70E-50 | -1.69E-46 |
| MS.gene050226 | MS.gene87264 | 0.837016 | 6.67E-57 | -1.69E-46 |
| MS.gene050227 | MS.gene87264 | 0.822648 | 2.12E-53 | -1.69E-46 |
| MS.gene050228 | MS.gene87264 | 0.831299 | 1.81E-55 | -1.69E-46 |
| MS.gene050438 | MS.gene87264 | 0.805712 | 1.17E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene87264 | 0.844839 | 5.89E-59 | -1.69E-46 |
| MS.gene050623 | MS.gene87264 | -0.800574 | 1.35E-48 | -1.69E-46 |
| MS.gene050680 | MS.gene87264 | 0.82365 | 1.24E-53 | -1.69E-46 |
| MS.gene050719 | MS.gene87264 | 0.815567 | 8.65E-52 | -1.69E-46 |
| MS.gene050721 | MS.gene87264 | 0.814008 | 1.92E-51 | -1.69E-46 |
| MS.gene050724 | MS.gene87264 | 0.820503 | 6.63E-53 | -1.69E-46 |
| MS.gene050762 | MS.gene87264 | 0.844587 | 6.89E-59 | -1.69E-46 |
| MS.gene050763 | MS.gene87264 | 0.845036 | 5.22E-59 | -1.69E-46 |
| MS.gene050780 | MS.gene87264 | 0.833953 | 3.97E-56 | -1.69E-46 |
| MS.gene050807 | MS.gene87264 | 0.834873 | 2.33E-56 | -1.69E-46 |
| MS.gene050808 | MS.gene87264 | 0.812589 | 3.93E-51 | -1.69E-46 |
| MS.gene050826 | MS.gene87264 | 0.835346 | 1.77E-56 | -1.69E-46 |
| MS.gene050987 | MS.gene87264 | 0.809728 | 1.64E-50 | -1.69E-46 |
| MS.gene051180 | MS.gene87264 | 0.820691 | 6.00E-53 | -1.69E-46 |
| MS.gene051210 | MS.gene87264 | 0.808634 | 2.81E-50 | -1.69E-46 |
| MS.gene051265 | MS.gene87264 | 0.805111 | 1.56E-49 | -1.69E-46 |
| MS.gene051800 | MS.gene87264 | 0.801667 | 8.08E-49 | -1.69E-46 |
| MS.gene052020 | MS.gene87264 | 0.808722 | 2.69E-50 | -1.69E-46 |
| MS.gene052176 | MS.gene87264 | 0.825453 | 4.65E-54 | -1.69E-46 |
| MS.gene052426 | MS.gene87264 | 0.835677 | 1.46E-56 | -1.69E-46 |
| MS.gene052665 | MS.gene87264 | 0.819374 | 1.20E-52 | -1.69E-46 |
| MS.gene052896 | MS.gene87264 | 0.810724 | 1.00E-50 | -1.69E-46 |
| MS.gene053166 | MS.gene87264 | 0.817431 | 3.31E-52 | -1.69E-46 |
| MS.gene053184 | MS.gene87264 | 0.832988 | 6.90E-56 | -1.69E-46 |
| MS.gene053494 | MS.gene87264 | 0.813224 | 2.85E-51 | -1.69E-46 |
| MS.gene053811 | MS.gene87264 | 0.827082 | 1.90E-54 | -1.69E-46 |
| MS.gene05417 | MS.gene87264 | 0.802745 | 4.85E-49 | -1.69E-46 |
| MS.gene054236 | MS.gene87264 | 0.807926 | 3.98E-50 | -1.69E-46 |
| MS.gene054379 | MS.gene87264 | 0.858656 | 7.09E-63 | -1.69E-46 |
| MS.gene054467 | MS.gene87264 | 0.850862 | 1.29E-60 | -1.69E-46 |
| MS.gene054468 | MS.gene87264 | 0.851081 | 1.12E-60 | -1.69E-46 |
| MS.gene054472 | MS.gene87264 | 0.819057 | 1.42E-52 | -1.69E-46 |
| MS.gene054542 | MS.gene87264 | 0.816904 | 4.35E-52 | -1.69E-46 |
| MS.gene05468 | MS.gene87264 | 0.820465 | 6.76E-53 | -1.69E-46 |
| MS.gene054930 | MS.gene87264 | 0.847709 | 9.74E-60 | -1.69E-46 |
| MS.gene05510 | MS.gene87264 | 0.820146 | 8.00E-53 | -1.69E-46 |
| MS.gene055356 | MS.gene87264 | 0.822362 | 2.47E-53 | -1.69E-46 |
| MS.gene055358 | MS.gene87264 | 0.812567 | 3.97E-51 | -1.69E-46 |
| MS.gene055701 | MS.gene87264 | 0.839028 | 2.02E-57 | -1.69E-46 |
| MS.gene055818 | MS.gene87264 | 0.803395 | 3.56E-49 | -1.69E-46 |
| MS.gene055926 | MS.gene87264 | 0.829494 | 4.99E-55 | -1.69E-46 |
| MS.gene05604 | MS.gene87264 | 0.837832 | 4.12E-57 | -1.69E-46 |
| MS.gene056506 | MS.gene87264 | 0.802834 | 4.65E-49 | -1.69E-46 |
| MS.gene056760 | MS.gene87264 | 0.808698 | 2.73E-50 | -1.69E-46 |
| MS.gene056873 | MS.gene87264 | 0.801435 | 9.02E-49 | -1.69E-46 |
| MS.gene057194 | MS.gene87264 | 0.801298 | 9.62E-49 | -1.69E-46 |
| MS.gene057394 | MS.gene87264 | 0.820373 | 7.10E-53 | -1.69E-46 |
| MS.gene057395 | MS.gene87264 | 0.820585 | 6.35E-53 | -1.69E-46 |
| MS.gene057469 | MS.gene87264 | 0.816801 | 4.58E-52 | -1.69E-46 |
| MS.gene05761 | MS.gene87264 | 0.833933 | 4.01E-56 | -1.69E-46 |
| MS.gene057750 | MS.gene87264 | 0.827363 | 1.63E-54 | -1.69E-46 |
| MS.gene057869 | MS.gene87264 | 0.822757 | 2.00E-53 | -1.69E-46 |
| MS.gene057929 | MS.gene87264 | 0.815897 | 7.31E-52 | -1.69E-46 |
| MS.gene058146 | MS.gene87264 | 0.833506 | 5.13E-56 | -1.69E-46 |
| MS.gene059124 | MS.gene87264 | 0.813668 | 2.28E-51 | -1.69E-46 |
| MS.gene059128 | MS.gene87264 | 0.839704 | 1.35E-57 | -1.69E-46 |
| MS.gene059713 | MS.gene87264 | 0.851519 | 8.42E-61 | -1.69E-46 |
| MS.gene059725 | MS.gene87264 | 0.815159 | 1.07E-51 | -1.69E-46 |
| MS.gene05973 | MS.gene87264 | 0.806882 | 6.63E-50 | -1.69E-46 |
| MS.gene060167 | MS.gene87264 | 0.830453 | 2.91E-55 | -1.69E-46 |
| MS.gene060322 | MS.gene87264 | 0.858786 | 6.49E-63 | -1.69E-46 |
| MS.gene06052 | MS.gene87264 | 0.830546 | 2.76E-55 | -1.69E-46 |
| MS.gene060683 | MS.gene87264 | 0.85068 | 1.45E-60 | -1.69E-46 |
| MS.gene060685 | MS.gene87264 | 0.846479 | 2.12E-59 | -1.69E-46 |
| MS.gene060802 | MS.gene87264 | 0.830411 | 2.98E-55 | -1.69E-46 |
| MS.gene060803 | MS.gene87264 | 0.815387 | 9.49E-52 | -1.69E-46 |
| MS.gene060998 | MS.gene87264 | 0.868644 | 5.60E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87264.t1 | MTR_2g082180 | 96.277 | 188 | 7 | 0 | 1 | 188 | 1 | 188 | 1.01e-136 | 379 |
| MS.gene87264.t1 | MTR_0769s0020 | 96.512 | 86 | 3 | 0 | 103 | 188 | 5 | 90 | 2.07e-58 | 178 |
| MS.gene87264.t1 | MTR_4g091590 | 28.431 | 102 | 67 | 1 | 85 | 180 | 52 | 153 | 1.13e-13 | 65.9 |
| MS.gene87264.t1 | MTR_6g061940 | 28.244 | 131 | 82 | 3 | 60 | 180 | 25 | 153 | 1.37e-13 | 65.5 |
| MS.gene87264.t1 | MTR_4g088490 | 28.431 | 102 | 67 | 1 | 85 | 180 | 54 | 155 | 3.04e-13 | 64.7 |
| MS.gene87264.t1 | MTR_6g061850 | 27.481 | 131 | 83 | 3 | 60 | 180 | 25 | 153 | 6.00e-13 | 63.9 |
| MS.gene87264.t1 | MTR_4g088475 | 27.632 | 152 | 94 | 5 | 52 | 188 | 5 | 155 | 3.71e-12 | 63.2 |
| MS.gene87264.t1 | MTR_5g081530 | 26.271 | 118 | 79 | 2 | 60 | 177 | 25 | 134 | 6.68e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87264.t1 | AT5G54660 | 59.551 | 178 | 67 | 3 | 7 | 179 | 9 | 186 | 1.34e-73 | 220 |
| MS.gene87264.t1 | AT1G53540 | 27.273 | 121 | 87 | 1 | 59 | 179 | 24 | 143 | 1.26e-14 | 68.6 |
| MS.gene87264.t1 | AT1G07400 | 25.850 | 147 | 96 | 4 | 52 | 187 | 5 | 149 | 2.38e-12 | 62.4 |
| MS.gene87264.t1 | AT1G59860 | 27.723 | 101 | 72 | 1 | 87 | 187 | 48 | 147 | 2.49e-12 | 62.4 |
| MS.gene87264.t1 | AT4G10250 | 30.000 | 140 | 81 | 6 | 47 | 179 | 35 | 164 | 5.32e-12 | 62.0 |
Find 41 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGAAACACACCATTTATT+TGG | 0.108653 | 2.2:+14470543 | None:intergenic |
| CTTCTGATGCATTTCCTCTA+TGG | 0.258229 | 2.2:-14470410 | MS.gene87264:CDS |
| TGTGGTCATTGGTGGGAAAA+TGG | 0.259017 | 2.2:-14468806 | MS.gene87264:CDS |
| ATTCAAGTCCATGTTGATAA+AGG | 0.284747 | 2.2:-14468893 | MS.gene87264:CDS |
| TAAAATGCCAAAGATCAAAA+AGG | 0.291755 | 2.2:-14468699 | MS.gene87264:CDS |
| ATGATCAAACTCCAAATAAA+TGG | 0.295652 | 2.2:-14470554 | MS.gene87264:CDS |
| AATAAATGGTGTGTTTCATT+AGG | 0.320504 | 2.2:-14470540 | MS.gene87264:CDS |
| TTCTGATGCATTTCCTCTAT+GGG | 0.421633 | 2.2:-14470409 | MS.gene87264:CDS |
| TTCAAGTCCATGTTGATAAA+GGG | 0.436330 | 2.2:-14468892 | MS.gene87264:CDS |
| GAGACTCGAAGACAAATGAT+TGG | 0.456799 | 2.2:-14468832 | MS.gene87264:CDS |
| TTCTTCCAATCTGCATCCTC+TGG | 0.460108 | 2.2:+14468761 | None:intergenic |
| GATGCCAATCCACAGTGGTT+TGG | 0.466039 | 2.2:+14470343 | None:intergenic |
| AAGAATTTCCCAAACAACAT+TGG | 0.483083 | 2.2:+14470438 | None:intergenic |
| AGATGCCAGAGGATGCAGAT+TGG | 0.502624 | 2.2:-14468766 | MS.gene87264:CDS |
| GTTGAGAAGAAATTAATGGC+TGG | 0.515593 | 2.2:-14470606 | None:intergenic |
| GGGAAAATGGATATGTAAGA+AGG | 0.521141 | 2.2:-14468793 | MS.gene87264:CDS |
| ATTGGAGGTGTGGTCATTGG+TGG | 0.523846 | 2.2:-14468814 | MS.gene87264:CDS |
| AATGGCTGGTTCTAACAAGA+AGG | 0.530014 | 2.2:-14470592 | MS.gene87264:CDS |
| CCAATCCACAGTGGTTTGGT+TGG | 0.532581 | 2.2:+14470347 | None:intergenic |
| CCAACCAAACCACTGTGGAT+TGG | 0.534059 | 2.2:-14470347 | MS.gene87264:CDS |
| ATGATTGGAGGTGTGGTCAT+TGG | 0.535519 | 2.2:-14468817 | MS.gene87264:CDS |
| CCACCTTCCCTTTATCAACA+TGG | 0.538491 | 2.2:+14468885 | None:intergenic |
| AAGGGTTCTGATCATGCTCA+AGG | 0.575715 | 2.2:-14468680 | MS.gene87264:CDS |
| TGGTTCTAACAAGAAGGTTG+AGG | 0.580733 | 2.2:-14470586 | MS.gene87264:CDS |
| CATAGAGGAAATGCATCAGA+AGG | 0.582851 | 2.2:+14470411 | None:intergenic |
| TCTGACTCAAACTCCCATAG+AGG | 0.584106 | 2.2:+14470396 | None:intergenic |
| TTGGAGGTGTGGTCATTGGT+GGG | 0.595589 | 2.2:-14468813 | MS.gene87264:CDS |
| ATGTTAAAAGCTGAAATACC+AGG | 0.596563 | 2.2:-14470303 | MS.gene87264:intron |
| GACTAATCCAACAGTTCACA+AGG | 0.599483 | 2.2:-14470487 | MS.gene87264:CDS |
| AAGACAAATGATTGGAGGTG+TGG | 0.600642 | 2.2:-14468824 | MS.gene87264:CDS |
| ACTCGAAGACAAATGATTGG+AGG | 0.612468 | 2.2:-14468829 | MS.gene87264:CDS |
| GATTGGCATCACACAGATGA+GGG | 0.616017 | 2.2:-14470330 | MS.gene87264:CDS |
| GGGAAGGTGGTGGAAATCAG+TGG | 0.621675 | 2.2:-14468872 | MS.gene87264:CDS |
| TGTTGATAAAGGGAAGGTGG+TGG | 0.624580 | 2.2:-14468882 | MS.gene87264:CDS |
| CCATGTTGATAAAGGGAAGG+TGG | 0.624798 | 2.2:-14468885 | MS.gene87264:CDS |
| GGATTGGCATCACACAGATG+AGG | 0.649591 | 2.2:-14470331 | MS.gene87264:CDS |
| TGGTGGAAATCAGTGGACAA+TGG | 0.653289 | 2.2:-14468865 | MS.gene87264:CDS |
| AGTCCATGTTGATAAAGGGA+AGG | 0.656983 | 2.2:-14468888 | MS.gene87264:CDS |
| AAGAAGGCTTGAGATGCCAG+AGG | 0.727204 | 2.2:-14468777 | MS.gene87264:CDS |
| AAGTTCCAACCAAACCACTG+TGG | 0.744020 | 2.2:-14470352 | MS.gene87264:CDS |
| TGTGTGATGCCAATCCACAG+TGG | 0.796798 | 2.2:+14470338 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTCATATGTTTAAATA+TGG | - | chr2.2:14469540-14469559 | MS.gene87264:intron | 10.0% |
| !!! | AGAAATTAAAGTTTTTTTTT+AGG | - | chr2.2:14469057-14469076 | MS.gene87264:intron | 10.0% |
| !!! | GAAATTAAAGTTTTTTTTTA+GGG | - | chr2.2:14469058-14469077 | MS.gene87264:intron | 10.0% |
| !!! | TTAATTTCTCTTATTTTATT+AGG | + | chr2.2:14469046-14469065 | None:intergenic | 10.0% |
| !! | AGTAAAATATATCTCAAAAT+TGG | - | chr2.2:14469310-14469329 | MS.gene87264:intron | 15.0% |
| !! | AGTCCTTATATATATTTAAA+GGG | - | chr2.2:14470128-14470147 | MS.gene87264:intron | 15.0% |
| !! | TAGTCCTTATATATATTTAA+AGG | - | chr2.2:14470127-14470146 | MS.gene87264:intron | 15.0% |
| !! | TGTTATTATTACATATAAAC+AGG | - | chr2.2:14469408-14469427 | MS.gene87264:intron | 15.0% |
| !!! | CTTTGTTTTGATAATAAATT+TGG | - | chr2.2:14469570-14469589 | MS.gene87264:intron | 15.0% |
| !! | AAAATATATCTCAAAATTGG+AGG | - | chr2.2:14469313-14469332 | MS.gene87264:intron | 20.0% |
| !! | AAATTGACAATGTAAAGTTA+AGG | + | chr2.2:14469192-14469211 | None:intergenic | 20.0% |
| !! | AATTGACAATGTAAAGTTAA+GGG | + | chr2.2:14469191-14469210 | None:intergenic | 20.0% |
| !! | AGAATTCTAAGCAAAATTAT+AGG | + | chr2.2:14470255-14470274 | None:intergenic | 20.0% |
| !! | GAACTATTTATTAAATTTGC+AGG | - | chr2.2:14469335-14469354 | MS.gene87264:intron | 20.0% |
| !! | GAATTCTAAGCAAAATTATA+GGG | + | chr2.2:14470254-14470273 | None:intergenic | 20.0% |
| !! | TGACCCTTTAAATATATATA+AGG | + | chr2.2:14470134-14470153 | None:intergenic | 20.0% |
| !! | TTTAAAAACTAGCTATTAAG+GGG | + | chr2.2:14469774-14469793 | None:intergenic | 20.0% |
| !!! | AATTCAAATTCTTAGGTTTT+AGG | + | chr2.2:14469664-14469683 | None:intergenic | 20.0% |
| !!! | CAAAATAAAGAGATTTTATG+AGG | - | chr2.2:14469601-14469620 | MS.gene87264:intron | 20.0% |
| !!! | CAAGTTTTTAAATATGGAAA+GGG | + | chr2.2:14470186-14470205 | None:intergenic | 20.0% |
| !!! | CACAAAATTATTTGAAACAA+GGG | - | chr2.2:14469358-14469377 | MS.gene87264:intron | 20.0% |
| !!! | CATTCACATTTTATATGATA+CGG | + | chr2.2:14470061-14470080 | None:intergenic | 20.0% |
| !!! | CTTTAAAAACTAGCTATTAA+GGG | + | chr2.2:14469775-14469794 | None:intergenic | 20.0% |
| ! | AAAATGCCAAAGATCAAAAA+GGG | - | chr2.2:14470569-14470588 | MS.gene87264:CDS | 25.0% |
| ! | AATAAATGGTGTGTTTCATT+AGG | - | chr2.2:14468727-14468746 | MS.gene87264:CDS | 25.0% |
| ! | AATGAAACACACCATTTATT+TGG | + | chr2.2:14468727-14468746 | None:intergenic | 25.0% |
| ! | AATTTGAATTTCCTTACCAT+AGG | - | chr2.2:14469674-14469693 | MS.gene87264:intron | 25.0% |
| ! | ATATCTTATACTATTCCATG+TGG | + | chr2.2:14469727-14469746 | None:intergenic | 25.0% |
| ! | ATGATCAAACTCCAAATAAA+TGG | - | chr2.2:14468713-14468732 | MS.gene87264:CDS | 25.0% |
| ! | ATTTGAATTTCCTTACCATA+GGG | - | chr2.2:14469675-14469694 | MS.gene87264:intron | 25.0% |
| ! | GAAAGATTCACTATATAACA+AGG | + | chr2.2:14469436-14469455 | None:intergenic | 25.0% |
| ! | GAATAGTATAAGATATTTGC+TGG | - | chr2.2:14469731-14469750 | MS.gene87264:intron | 25.0% |
| ! | GTAAGGAAATTCAAATTCTT+AGG | + | chr2.2:14469671-14469690 | None:intergenic | 25.0% |
| ! | TAAAATGCCAAAGATCAAAA+AGG | - | chr2.2:14470568-14470587 | MS.gene87264:CDS | 25.0% |
| ! | TATCTTATACTATTCCATGT+GGG | + | chr2.2:14469726-14469745 | None:intergenic | 25.0% |
| ! | TTAAAAACTAGCTATTAAGG+GGG | + | chr2.2:14469773-14469792 | None:intergenic | 25.0% |
| ! | TTTAACATCATACAGATGAA+TGG | + | chr2.2:14469105-14469124 | None:intergenic | 25.0% |
| !! | CCTTTAAAAACTAGCTATTA+AGG | + | chr2.2:14469776-14469795 | None:intergenic | 25.0% |
| !! | GCAAGTTTTTAAATATGGAA+AGG | + | chr2.2:14470187-14470206 | None:intergenic | 25.0% |
| !! | GCACAAAATTATTTGAAACA+AGG | - | chr2.2:14469357-14469376 | MS.gene87264:intron | 25.0% |
| !! | TGTGTGCAAGTTTTTAAATA+TGG | + | chr2.2:14470192-14470211 | None:intergenic | 25.0% |
| !! | TTGGATAAGGAAATTTTATG+AGG | - | chr2.2:14469500-14469519 | MS.gene87264:intron | 25.0% |
| !!! | CCTTAATAGCTAGTTTTTAA+AGG | - | chr2.2:14469773-14469792 | MS.gene87264:intron | 25.0% |
| !!! | TACTTACTCTTTTTTTTTCC+AGG | + | chr2.2:14469294-14469313 | None:intergenic | 25.0% |
| !!! | TATTTTTCAAAACAGGAACT+GGG | - | chr2.2:14470342-14470361 | MS.gene87264:CDS | 25.0% |
| !!! | TTATTTTTCAAAACAGGAAC+TGG | - | chr2.2:14470341-14470360 | MS.gene87264:CDS | 25.0% |
| !!! | TTCCTGTTTTGAAAAATAAC+TGG | + | chr2.2:14470340-14470359 | None:intergenic | 25.0% |
| !!! | TTTTTAGTCCAATGTTGTTT+GGG | - | chr2.2:14468821-14468840 | MS.gene87264:CDS | 25.0% |
| AAGAATTTCCCAAACAACAT+TGG | + | chr2.2:14468832-14468851 | None:intergenic | 30.0% | |
| ATGAGGCAATTGAAAATACT+AGG | + | chr2.2:14470284-14470303 | None:intergenic | 30.0% | |
| ATGAGGTAATGTAATTTCAG+AGG | - | chr2.2:14469517-14469536 | MS.gene87264:intron | 30.0% | |
| ATGTTAAAAGCTGAAATACC+AGG | - | chr2.2:14468964-14468983 | MS.gene87264:intron | 30.0% | |
| CAAAATTTAGCTAGTGTGTT+TGG | - | chr2.2:14469481-14469500 | MS.gene87264:intron | 30.0% | |
| TGATAAGTATCCAAGAACTT+GGG | + | chr2.2:14470034-14470053 | None:intergenic | 30.0% | |
| ! | ATTCAAGTCCATGTTGATAA+AGG | - | chr2.2:14470374-14470393 | MS.gene87264:CDS | 30.0% |
| ! | CACATTTTATATGATACGGA+AGG | + | chr2.2:14470057-14470076 | None:intergenic | 30.0% |
| ! | GCATTGTAATATTTGTTACC+TGG | + | chr2.2:14468985-14469004 | None:intergenic | 30.0% |
| ! | TTCAAGTCCATGTTGATAAA+GGG | - | chr2.2:14470375-14470394 | MS.gene87264:CDS | 30.0% |
| !! | CTTTTTAGTCCAATGTTGTT+TGG | - | chr2.2:14468820-14468839 | MS.gene87264:CDS | 30.0% |
| !! | GCATCATCATTTTTAAATCC+TGG | - | chr2.2:14469273-14469292 | MS.gene87264:intron | 30.0% |
| !!! | CACCAGTTATTTTTCAAAAC+AGG | - | chr2.2:14470335-14470354 | MS.gene87264:CDS | 30.0% |
| AAAAATGGCAATACCTACGA+AGG | - | chr2.2:14469819-14469838 | MS.gene87264:intron | 35.0% | |
| AAAATGGCAATACCTACGAA+GGG | - | chr2.2:14469820-14469839 | MS.gene87264:intron | 35.0% | |
| ATACTATTCCATGTGGGATT+TGG | + | chr2.2:14469720-14469739 | None:intergenic | 35.0% | |
| ATAGGGACTTCAGTATTATG+GGG | - | chr2.2:14469919-14469938 | MS.gene87264:intron | 35.0% | |
| ATCAAGTAGTATGGGATGTT+CGG | - | chr2.2:14469956-14469975 | MS.gene87264:intron | 35.0% | |
| ATTTCCTTACCATAGGGATT+TGG | - | chr2.2:14469681-14469700 | MS.gene87264:intron | 35.0% | |
| CCTTAGAAGCTAGTTATCAA+CGG | + | chr2.2:14470003-14470022 | None:intergenic | 35.0% | |
| CTTAGAAGCTAGTTATCAAC+GGG | + | chr2.2:14470002-14470021 | None:intergenic | 35.0% | |
| GATAAGTATCCAAGAACTTG+GGG | + | chr2.2:14470033-14470052 | None:intergenic | 35.0% | |
| GATAGGGACTTCAGTATTAT+GGG | - | chr2.2:14469918-14469937 | MS.gene87264:intron | 35.0% | |
| GGGAAAATGGATATGTAAGA+AGG | - | chr2.2:14470474-14470493 | MS.gene87264:CDS | 35.0% | |
| GTGATAAGTATCCAAGAACT+TGG | + | chr2.2:14470035-14470054 | None:intergenic | 35.0% | |
| GTTAATCATCACACAGATGA+AGG | - | chr2.2:14469126-14469145 | MS.gene87264:intron | 35.0% | |
| TACTATTCCATGTGGGATTT+GGG | + | chr2.2:14469719-14469738 | None:intergenic | 35.0% | |
| TTAGAAGCTAGTTATCAACG+GGG | + | chr2.2:14470001-14470020 | None:intergenic | 35.0% | |
| TTAGCTAGTGTGTTTGGATA+AGG | - | chr2.2:14469487-14469506 | MS.gene87264:intron | 35.0% | |
| TTCTGATGCATTTCCTCTAT+GGG | - | chr2.2:14468858-14468877 | MS.gene87264:CDS | 35.0% | |
| ! | ATTTCCACTAAGAGTGTGTT+TGG | + | chr2.2:14470307-14470326 | None:intergenic | 35.0% |
| ! | TCAGAACCCTTTTTGATCTT+TGG | + | chr2.2:14470578-14470597 | None:intergenic | 35.0% |
| !! | CGTTGATAACTAGCTTCTAA+GGG | - | chr2.2:14470001-14470020 | MS.gene87264:intron | 35.0% |
| !!! | ATTTTTGAGTCATCGACATG+GGG | + | chr2.2:14469805-14469824 | None:intergenic | 35.0% |
| !!! | CATTTTTGAGTCATCGACAT+GGG | + | chr2.2:14469806-14469825 | None:intergenic | 35.0% |
| AAATGGCAATACCTACGAAG+GGG | - | chr2.2:14469821-14469840 | MS.gene87264:intron | 40.0% | |
| AAGACAAATGATTGGAGGTG+TGG | - | chr2.2:14470443-14470462 | MS.gene87264:CDS | 40.0% | |
| AAGTCCCACATCAAGTAGTA+TGG | - | chr2.2:14469947-14469966 | MS.gene87264:intron | 40.0% | |
| ACATCCCATACTACTTGATG+TGG | + | chr2.2:14469955-14469974 | None:intergenic | 40.0% | |
| ACTACCAAATCCCTATGGTA+AGG | + | chr2.2:14469688-14469707 | None:intergenic | 40.0% | |
| ACTCGAAGACAAATGATTGG+AGG | - | chr2.2:14470438-14470457 | MS.gene87264:CDS | 40.0% | |
| AGTCCCACATCAAGTAGTAT+GGG | - | chr2.2:14469948-14469967 | MS.gene87264:intron | 40.0% | |
| CATAGAGGAAATGCATCAGA+AGG | + | chr2.2:14468859-14468878 | None:intergenic | 40.0% | |
| CATCCCATACTACTTGATGT+GGG | + | chr2.2:14469954-14469973 | None:intergenic | 40.0% | |
| CCAAAAACCTTGTGAACTGT+TGG | + | chr2.2:14468790-14468809 | None:intergenic | 40.0% | |
| CCATGTCGATGACTCAAAAA+TGG | - | chr2.2:14469804-14469823 | MS.gene87264:intron | 40.0% | |
| CTTCTGATGCATTTCCTCTA+TGG | - | chr2.2:14468857-14468876 | MS.gene87264:CDS | 40.0% | |
| GACTAATCCAACAGTTCACA+AGG | - | chr2.2:14468780-14468799 | MS.gene87264:CDS | 40.0% | |
| GAGACTCGAAGACAAATGAT+TGG | - | chr2.2:14470435-14470454 | MS.gene87264:CDS | 40.0% | |
| GGATAGGGACTTCAGTATTA+TGG | - | chr2.2:14469917-14469936 | MS.gene87264:intron | 40.0% | |
| TCATCCAAACACACTCTTAG+TGG | - | chr2.2:14470300-14470319 | MS.gene87264:intron | 40.0% | |
| ! | ACCATAGGGATTTGGTAGTA+TGG | - | chr2.2:14469689-14469708 | MS.gene87264:intron | 40.0% |
| ! | ACTAAGAGTGTGTTTGGATG+AGG | + | chr2.2:14470301-14470320 | None:intergenic | 40.0% |
| ! | AGTCCATGTTGATAAAGGGA+AGG | - | chr2.2:14470379-14470398 | MS.gene87264:CDS | 40.0% |
| ! | CATAGGGATTTGGTAGTATG+GGG | - | chr2.2:14469691-14469710 | MS.gene87264:intron | 40.0% |
| ! | CCAACAGTTCACAAGGTTTT+TGG | - | chr2.2:14468787-14468806 | MS.gene87264:CDS | 40.0% |
| ! | CCATAGGGATTTGGTAGTAT+GGG | - | chr2.2:14469690-14469709 | MS.gene87264:intron | 40.0% |
| ! | GATAACTAGCTTCTAAGGGA+GGG | - | chr2.2:14470005-14470024 | MS.gene87264:intron | 40.0% |
| ! | GATATTTGCTGGAAGTAGCT+TGG | - | chr2.2:14469742-14469761 | MS.gene87264:intron | 40.0% |
| ! | TAGAACCATAGAAGTGCATG+AGG | - | chr2.2:14469458-14469477 | MS.gene87264:intron | 40.0% |
| ! | TGATAACTAGCTTCTAAGGG+AGG | - | chr2.2:14470004-14470023 | MS.gene87264:intron | 40.0% |
| ! | TTTTGCCTCATGCACTTCTA+TGG | + | chr2.2:14469466-14469485 | None:intergenic | 40.0% |
| !! | ATACTCTACGGTGCTATACT+TGG | + | chr2.2:14469861-14469880 | None:intergenic | 40.0% |
| !! | CCGTTGATAACTAGCTTCTA+AGG | - | chr2.2:14470000-14470019 | MS.gene87264:intron | 40.0% |
| !! | TACTCTACGGTGCTATACTT+GGG | + | chr2.2:14469860-14469879 | None:intergenic | 40.0% |
| !! | TATGGAAAGGGCACTTGTTA+AGG | + | chr2.2:14470174-14470193 | None:intergenic | 40.0% |
| !! | TGGTTCTAACAAGAAGGTTG+AGG | - | chr2.2:14468681-14468700 | MS.gene87264:CDS | 40.0% |
| !!! | CCATTTTTGAGTCATCGACA+TGG | + | chr2.2:14469807-14469826 | None:intergenic | 40.0% |
| !!! | GTTCACAAGGTTTTTGGTGA+TGG | - | chr2.2:14468793-14468812 | MS.gene87264:CDS | 40.0% |
| AAGTTCCAACCAAACCACTG+TGG | - | chr2.2:14468915-14468934 | MS.gene87264:intron | 45.0% | |
| CCACCTTCCCTTTATCAACA+TGG | + | chr2.2:14470385-14470404 | None:intergenic | 45.0% | |
| CCCATACTACCAAATCCCTA+TGG | + | chr2.2:14469693-14469712 | None:intergenic | 45.0% | |
| GATTGGCATCACACAGATGA+GGG | - | chr2.2:14468937-14468956 | MS.gene87264:intron | 45.0% | |
| TCAGAGACGTTGCTAGGATA+GGG | - | chr2.2:14469902-14469921 | MS.gene87264:intron | 45.0% | |
| TCTGACTCAAACTCCCATAG+AGG | + | chr2.2:14468874-14468893 | None:intergenic | 45.0% | |
| TGGTGGAAATCAGTGGACAA+TGG | - | chr2.2:14470402-14470421 | MS.gene87264:CDS | 45.0% | |
| TGTGGTCATTGGTGGGAAAA+TGG | - | chr2.2:14470461-14470480 | MS.gene87264:CDS | 45.0% | |
| TTCTTCCAATCTGCATCCTC+TGG | + | chr2.2:14470509-14470528 | None:intergenic | 45.0% | |
| ! | AAGGGTTCTGATCATGCTCA+AGG | - | chr2.2:14470587-14470606 | MS.gene87264:CDS | 45.0% |
| ! | ATGATTGGAGGTGTGGTCAT+TGG | - | chr2.2:14470450-14470469 | MS.gene87264:CDS | 45.0% |
| ! | CCATGTTGATAAAGGGAAGG+TGG | - | chr2.2:14470382-14470401 | MS.gene87264:CDS | 45.0% |
| ! | GATGTTCGGTGAAAGTAGCT+TGG | - | chr2.2:14469970-14469989 | MS.gene87264:intron | 45.0% |
| ! | TGTTGATAAAGGGAAGGTGG+TGG | - | chr2.2:14470385-14470404 | MS.gene87264:CDS | 45.0% |
| !! | TTTTTAGTCAGCCCCTTCGT+AGG | + | chr2.2:14469835-14469854 | None:intergenic | 45.0% |
| !! | AAAATTTGAAAAATTAAATA+GGG | + | chr2.2:14470218-14470237 | None:intergenic | 5.0% |
| !! | TAAAATTTGAAAAATTAAAT+AGG | + | chr2.2:14470219-14470238 | None:intergenic | 5.0% |
| AAGAAGGCTTGAGATGCCAG+AGG | - | chr2.2:14470490-14470509 | MS.gene87264:CDS | 50.0% | |
| AGATGCCAGAGGATGCAGAT+TGG | - | chr2.2:14470501-14470520 | MS.gene87264:CDS | 50.0% | |
| CCAACCAAACCACTGTGGAT+TGG | - | chr2.2:14468920-14468939 | MS.gene87264:intron | 50.0% | |
| CTCAGAGACGTTGCTAGGAT+AGG | - | chr2.2:14469901-14469920 | MS.gene87264:intron | 50.0% | |
| GATGCCAATCCACAGTGGTT+TGG | + | chr2.2:14468927-14468946 | None:intergenic | 50.0% | |
| TCTGAGAAGCAACATCCCGA+CGG | + | chr2.2:14469887-14469906 | None:intergenic | 50.0% | |
| TGCTTCTCAGAGACGTTGCT+AGG | - | chr2.2:14469896-14469915 | MS.gene87264:intron | 50.0% | |
| TGTGTGATGCCAATCCACAG+TGG | + | chr2.2:14468932-14468951 | None:intergenic | 50.0% | |
| ! | ATTGGAGGTGTGGTCATTGG+TGG | - | chr2.2:14470453-14470472 | MS.gene87264:CDS | 50.0% |
| ! | GGATTGGCATCACACAGATG+AGG | - | chr2.2:14468936-14468955 | MS.gene87264:intron | 50.0% |
| ! | TTGGAGGTGTGGTCATTGGT+GGG | - | chr2.2:14470454-14470473 | MS.gene87264:CDS | 50.0% |
| !! | CCAATCCACAGTGGTTTGGT+TGG | + | chr2.2:14468923-14468942 | None:intergenic | 50.0% |
| TCCCGACGGCTGATACTCTA+CGG | + | chr2.2:14469873-14469892 | None:intergenic | 55.0% | |
| ! | ACCGTAGAGTATCAGCCGTC+GGG | - | chr2.2:14469869-14469888 | MS.gene87264:intron | 55.0% |
| ! | CACCGTAGAGTATCAGCCGT+CGG | - | chr2.2:14469868-14469887 | MS.gene87264:intron | 55.0% |
| !! | GGGAAGGTGGTGGAAATCAG+TGG | - | chr2.2:14470395-14470414 | MS.gene87264:CDS | 55.0% |
| GGGAGGGTTCCCCAAGTTCT+TGG | - | chr2.2:14470021-14470040 | MS.gene87264:intron | 60.0% | |
| ! | TGGGGTGCCCAAATCCCACA+TGG | - | chr2.2:14469709-14469728 | MS.gene87264:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 14468676 | 14470613 | 14468676 | ID=MS.gene87264 |
| chr2.2 | mRNA | 14468676 | 14470613 | 14468676 | ID=MS.gene87264.t1;Parent=MS.gene87264 |
| chr2.2 | exon | 14470304 | 14470613 | 14470304 | ID=MS.gene87264.t1.exon1;Parent=MS.gene87264.t1 |
| chr2.2 | CDS | 14470304 | 14470613 | 14470304 | ID=cds.MS.gene87264.t1;Parent=MS.gene87264.t1 |
| chr2.2 | exon | 14468676 | 14468932 | 14468676 | ID=MS.gene87264.t1.exon2;Parent=MS.gene87264.t1 |
| chr2.2 | CDS | 14468676 | 14468932 | 14468676 | ID=cds.MS.gene87264.t1;Parent=MS.gene87264.t1 |
| Gene Sequence |
| Protein sequence |
