AlfalfaGEDB | MS.gene87264

M. sativa cultivar XinJiangDaYe / MS.gene87264

KEGG: -
GO: -
PFAM: PF00011.24

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87264.t1	XP_003596575.2	96.3	188	7	0	1	188	68	255	5.80E-107	396.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87264.t1	Q9FIT9	59.6	178	67	3	7	179	9	186	7.3e-58	224.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87264.t1	G7IHD0	96.3	188	7	0	1	188	1	188	4.2e-107	396.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049150	MS.gene87264	0.802802	4.72E-49	-1.69E-46
MS.gene049159	MS.gene87264	0.824853	6.44E-54	-1.69E-46
MS.gene049233	MS.gene87264	0.802221	6.22E-49	-1.69E-46
MS.gene049378	MS.gene87264	0.837554	4.86E-57	-1.69E-46
MS.gene049382	MS.gene87264	0.80652	7.90E-50	-1.69E-46
MS.gene049435	MS.gene87264	0.80285	4.61E-49	-1.69E-46
MS.gene04984	MS.gene87264	0.82344	1.38E-53	-1.69E-46
MS.gene049919	MS.gene87264	0.808718	2.70E-50	-1.69E-46
MS.gene050226	MS.gene87264	0.837016	6.67E-57	-1.69E-46
MS.gene050227	MS.gene87264	0.822648	2.12E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87264.t1	MTR_2g082180	96.277	188	7	0	1	188	1	188	1.01e-136	379
MS.gene87264.t1	MTR_0769s0020	96.512	86	3	0	103	188	5	90	2.07e-58	178
MS.gene87264.t1	MTR_4g091590	28.431	102	67	1	85	180	52	153	1.13e-13	65.9
MS.gene87264.t1	MTR_6g061940	28.244	131	82	3	60	180	25	153	1.37e-13	65.5
MS.gene87264.t1	MTR_4g088490	28.431	102	67	1	85	180	54	155	3.04e-13	64.7
MS.gene87264.t1	MTR_6g061850	27.481	131	83	3	60	180	25	153	6.00e-13	63.9
MS.gene87264.t1	MTR_4g088475	27.632	152	94	5	52	188	5	155	3.71e-12	63.2
MS.gene87264.t1	MTR_5g081530	26.271	118	79	2	60	177	25	134	6.68e-12	60.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87264.t1	AT5G54660	59.551	178	67	3	7	179	9	186	1.34e-73	220
MS.gene87264.t1	AT1G53540	27.273	121	87	1	59	179	24	143	1.26e-14	68.6
MS.gene87264.t1	AT1G07400	25.850	147	96	4	52	187	5	149	2.38e-12	62.4
MS.gene87264.t1	AT1G59860	27.723	101	72	1	87	187	48	147	2.49e-12	62.4
MS.gene87264.t1	AT4G10250	30.000	140	81	6	47	179	35	164	5.32e-12	62.0

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Find 41 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAAGGCTTGAGATGCCAG+AGG	0.727204	2.2:-14468777	MS.gene87264:CDS
AAGAATTTCCCAAACAACAT+TGG	0.483083	2.2:+14470438	None:intergenic
AAGACAAATGATTGGAGGTG+TGG	0.600642	2.2:-14468824	MS.gene87264:CDS
AAGGGTTCTGATCATGCTCA+AGG	0.575715	2.2:-14468680	MS.gene87264:CDS
AAGTTCCAACCAAACCACTG+TGG	0.744020	2.2:-14470352	MS.gene87264:CDS
AATAAATGGTGTGTTTCATT+AGG	0.320504	2.2:-14470540	MS.gene87264:CDS
AATGAAACACACCATTTATT+TGG	0.108653	2.2:+14470543	None:intergenic
AATGGCTGGTTCTAACAAGA+AGG	0.530014	2.2:-14470592	MS.gene87264:CDS
ACTCGAAGACAAATGATTGG+AGG	0.612468	2.2:-14468829	MS.gene87264:CDS
AGATGCCAGAGGATGCAGAT+TGG	0.502624	2.2:-14468766	MS.gene87264:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAATTTCCCAAACAACAT+TGG	+	chr2.2:14468832-14468851	None:intergenic	30.0%
ATGAGGCAATTGAAAATACT+AGG	+	chr2.2:14470284-14470303	None:intergenic	30.0%
ATGAGGTAATGTAATTTCAG+AGG	-	chr2.2:14469517-14469536	MS.gene87264:intron	30.0%
ATGTTAAAAGCTGAAATACC+AGG	-	chr2.2:14468964-14468983	MS.gene87264:intron	30.0%
CAAAATTTAGCTAGTGTGTT+TGG	-	chr2.2:14469481-14469500	MS.gene87264:intron	30.0%
TGATAAGTATCCAAGAACTT+GGG	+	chr2.2:14470034-14470053	None:intergenic	30.0%
AAAAATGGCAATACCTACGA+AGG	-	chr2.2:14469819-14469838	MS.gene87264:intron	35.0%
AAAATGGCAATACCTACGAA+GGG	-	chr2.2:14469820-14469839	MS.gene87264:intron	35.0%
ATACTATTCCATGTGGGATT+TGG	+	chr2.2:14469720-14469739	None:intergenic	35.0%
ATAGGGACTTCAGTATTATG+GGG	-	chr2.2:14469919-14469938	MS.gene87264:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	14468676	14470613	14468676	ID=MS.gene87264
chr2.2	mRNA	14468676	14470613	14468676	ID=MS.gene87264.t1;Parent=MS.gene87264
chr2.2	exon	14470304	14470613	14470304	ID=MS.gene87264.t1.exon1;Parent=MS.gene87264.t1
chr2.2	CDS	14470304	14470613	14470304	ID=cds.MS.gene87264.t1;Parent=MS.gene87264.t1
chr2.2	exon	14468676	14468932	14468676	ID=MS.gene87264.t1.exon2;Parent=MS.gene87264.t1
chr2.2	CDS	14468676	14468932	14468676	ID=cds.MS.gene87264.t1;Parent=MS.gene87264.t1

Gene Sequence

>MS.gene87264

ATGGCTGGTTCTAACAAGAAGGTTGAGGTGATTTTAGATGATCAAACTCCAAATAAATGGTGTGTTTCATTAGGAGATGAAACTTTCAAAAGATTCTTCAGCATGACTAATCCAACAGTTCACAAGGTTTTTGGTGATGGATCACTTTTTAGTCCAATGTTGTTTGGGAAATTCTTTGATCCTTCTGATGCATTTCCTCTATGGGAGTTTGAGTCAGATGTTTTGTTATCTCATCTAAGAAGTTCCAACCAAACCACTGTGGATTGGCATCACACAGATGAGGGCTATATGTTAAAAGCTGAAATACCAGGTAACAAATATTACAATGCATTTATTTTTCATATTTTCTGATTTAATTTTCACTTAACCTAATAAAATAAGAGAAATTAAAGTTTTTTTTTAGGGAAAGAGAAATAAAAGTTGAAACCATTCATCTGTATGATGTTAAATGTTAATCATCACACAGATGAAGGCTTTATGAAAATTGAAAATGTTTTCAGAAAGTAAACAAGCCCTTAACTTTACATTGTCAATTTCTCACTTCACATACTCTATGTAAACTGAACTTGTGCTAAACAAAACTGAAATGATCAAATTGCATCATCATTTTTAAATCCTGGAAAAAAAAAGAGTAAGTAAAATATATCTCAAAATTGGAGGAACTATTTATTAAATTTGCAGGCACAAAATTATTTGAAACAAGGGAGAAGACATCAAGTTTTCTTTACTAGCTGTTATTATTACATATAAACAGGTACCTTGTTATATAGTGAATCTTTCAATAGAACCATAGAAGTGCATGAGGCAAAATTTAGCTAGTGTGTTTGGATAAGGAAATTTTATGAGGTAATGTAATTTCAGAGGATAATTCATATGTTTAAATATGGATTATTACTTTGTTTTGATAATAAATTTGGAGAATTTTCAAAATAAAGAGATTTTATGAGGTTTTGTGAACACGAAATTTAGAGAATTTCAAATACTACCTAAAACCTAAGAATTTGAATTTCCTTACCATAGGGATTTGGTAGTATGGGGTGCCCAAATCCCACATGGAATAGTATAAGATATTTGCTGGAAGTAGCTTGGTTCTTCCCCCTTAATAGCTAGTTTTTAAAGGAGTATTCCCCATGTCGATGACTCAAAAATGGCAATACCTACGAAGGGGCTGACTAAAAAAGCCCAAGTATAGCACCGTAGAGTATCAGCCGTCGGGATGTTGCTTCTCAGAGACGTTGCTAGGATAGGGACTTCAGTATTATGGGGTGTCAAAGTCCCACATCAAGTAGTATGGGATGTTCGGTGAAAGTAGCTTGGTTCTTCCCCGTTGATAACTAGCTTCTAAGGGAGGGTTCCCCAAGTTCTTGGATACTTATCACCTTCCGTATCATATAAAATGTGAATGTGAATCTCAAATTAGTACTTGTTTTTTTTTATAAAATTTTGTAGATTAGTCCTTATATATATTTAAAGGGTCATGCTAACAAAAATTAGTCCTTAACAAGTGCCCTTTCCATATTTAAAAACTTGCACACATGTCCCTATTTAATTTTTCAAATTTTACAGATTGATGATCCCTATAATTTTGCTTAGAATTCTCAATTTCCTAGTATTTTCAATTGCCTCATCCAAACACACTCTTAGTGGAAATTTCTATGACACCAGTTATTTTTCAAAACAGGAACTGGGAAAAACAACATTCAAGTCCATGTTGATAAAGGGAAGGTGGTGGAAATCAGTGGACAATGGAAGCAGCAAAGAGACTCGAAGACAAATGATTGGAGGTGTGGTCATTGGTGGGAAAATGGATATGTAAGAAGGCTTGAGATGCCAGAGGATGCAGATTGGAAGAATATACAAGCATTCATATATAATGACATATTCTTAGAAATTAAAATGCCAAAGATCAAAAAGGGTTCTGATCATGCTCAAGGATAA

Protein sequence

>MS.gene87264.t1

MAGSNKKVEVILDDQTPNKWCVSLGDETFKRFFSMTNPTVHKVFGDGSLFSPMLFGKFFDPSDAFPLWEFESDVLLSHLRSSNQTTVDWHHTDEGYMLKAEIPGTGKNNIQVHVDKGKVVEISGQWKQQRDSKTNDWRCGHWWENGYVRRLEMPEDADWKNIQAFIYNDIFLEIKMPKIKKGSDHAQG