AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene96230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96230.t1 MTR_2g019530 96.671 781 24 2 1 780 1 780 0.0 1562
MS.gene96230.t1 MTR_8g446430 57.510 779 246 7 1 779 1 694 0.0 866
MS.gene96230.t1 MTR_4g113530 62.218 487 179 3 16 500 11 494 0.0 622
MS.gene96230.t1 MTR_4g113530 26.246 301 171 9 511 772 582 870 5.28e-14 76.6
MS.gene96230.t1 MTR_2g006870 41.396 831 391 17 16 776 25 829 0.0 579
MS.gene96230.t1 MTR_1g011755 39.906 847 379 21 24 770 21 837 0.0 559
MS.gene96230.t1 MTR_3g107720 52.092 478 220 5 34 506 47 520 6.58e-166 502
MS.gene96230.t1 MTR_3g107720 57.143 70 22 3 702 770 820 882 3.27e-12 70.9
MS.gene96230.t1 MTR_3g108320 47.529 526 270 5 29 549 21 545 1.89e-158 474
MS.gene96230.t1 MTR_3g108320 50.313 479 233 4 29 503 21 498 2.25e-158 471
MS.gene96230.t1 MTR_3g108320 50.313 479 233 4 29 503 21 498 2.40e-158 471
MS.gene96230.t1 MTR_8g046440 72.982 285 76 1 223 507 11 294 2.48e-150 442
MS.gene96230.t1 MTR_5g077770 35.174 489 303 6 16 495 46 529 3.07e-94 313
MS.gene96230.t1 MTR_1g040590 31.010 287 180 4 183 466 11 282 3.27e-37 141
MS.gene96230.t1 MTR_4g113370 30.508 236 157 3 273 504 5 237 1.64e-30 120
MS.gene96230.t1 MTR_0279s0030 31.474 251 158 5 50 299 2 239 2.19e-26 112
MS.gene96230.t1 MTR_4g113390 33.493 209 131 5 48 251 16 221 7.10e-22 95.5
MS.gene96230.t1 MTR_4g020720 56.338 71 29 2 430 500 12 80 1.06e-14 75.5
MS.gene96230.t1 MTR_0279s0030 32.558 129 82 2 171 299 51 174 2.79e-12 68.9
MS.gene96230.t1 MTR_4g113290 25.214 234 107 8 69 299 1 169 4.75e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96230.t1 AT5G46240 71.571 503 142 1 1 503 1 502 0.0 788
MS.gene96230.t1 AT5G46240 50.538 93 37 2 681 770 588 674 1.23e-17 88.2
MS.gene96230.t1 AT4G18290 54.557 779 259 13 1 771 12 703 0.0 782
MS.gene96230.t1 AT4G18290 54.557 779 259 13 1 771 1 692 0.0 781
MS.gene96230.t1 AT4G32500 43.539 859 359 19 21 771 37 877 0.0 642
MS.gene96230.t1 AT2G25600 42.874 849 366 18 29 770 48 884 0.0 627
MS.gene96230.t1 AT2G26650 61.680 488 178 4 16 500 13 494 0.0 621
MS.gene96230.t1 AT2G26650 29.461 241 130 11 554 768 625 851 2.27e-13 74.7
MS.gene96230.t1 AT4G22200 40.886 790 393 21 29 775 43 801 0.0 548
MS.gene96230.t1 AT2G26650 63.544 395 136 3 108 500 1 389 1.03e-172 515
MS.gene96230.t1 AT2G26650 29.339 242 131 11 554 769 520 747 2.96e-13 73.9
MS.gene96230.t1 AT4G22200 51.975 481 225 5 29 505 43 521 5.64e-172 508
MS.gene96230.t1 AT4G32650 49.372 478 231 6 29 499 55 528 3.19e-140 426
MS.gene96230.t1 AT4G32650 49.372 478 231 6 29 499 55 528 5.04e-140 428
MS.gene96230.t1 AT4G32650 49.372 478 231 6 29 499 55 528 5.57e-140 428
MS.gene96230.t1 AT3G02850 30.350 771 472 20 48 770 71 824 2.85e-104 339
MS.gene96230.t1 AT3G02850 36.383 470 278 8 48 502 71 534 9.21e-99 318
MS.gene96230.t1 AT5G37500 29.253 776 491 22 49 777 55 819 4.95e-98 322
MS.gene96230.t1 AT3G02850 33.953 592 338 15 48 624 71 624 9.80e-98 320
MS.gene96230.t1 AT5G37500 36.481 466 278 8 49 505 55 511 2.52e-92 305
MS.gene96230.t1 AT5G37500 36.481 466 278 8 49 505 55 511 1.87e-91 305
MS.gene96230.t1 AT5G37500 35.965 456 274 8 59 505 11 457 6.45e-88 295
MS.gene96230.t1 AT2G23980 19.676 432 257 10 94 444 158 580 5.65e-14 76.3
MS.gene96230.t1 AT2G23980 19.676 432 257 10 94 444 158 580 5.65e-14 76.3
MS.gene96230.t1 AT2G23980 19.676 432 257 10 94 444 158 580 5.65e-14 76.3
MS.gene96230.t1 AT2G23980 19.676 432 257 10 94 444 158 580 5.65e-14 76.3
MS.gene96230.t1 AT2G23980 19.676 432 257 10 94 444 158 580 5.65e-14 76.3
MS.gene96230.t1 AT2G23980 19.676 432 257 10 94 444 131 553 6.59e-14 76.3

Find 147 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACTTTGTTCTTTAAAATT+TGG 0.068175 2.2:-65178320 None:intergenic
TGAAAGTACTTACAAAATTT+TGG 0.084247 2.2:-65178532 None:intergenic
ACCGTCCTGTTTACTGTTTC+GGG 0.161405 2.2:-65180410 None:intergenic
TTCTTAACATGTTGCGATTA+TGG 0.172049 2.2:+65177912 MS.gene96230:CDS
TGTGTCCACCCTATGGTATT+TGG 0.174885 2.2:-65180253 None:intergenic
GACATTTATGTACTGGTTTC+AGG 0.188389 2.2:+65179344 MS.gene96230:CDS
TCCTCAGGTATCATGTTATT+AGG 0.219587 2.2:-65180133 None:intergenic
TACCGTCCTGTTTACTGTTT+CGG 0.226231 2.2:-65180411 None:intergenic
ATATCTTAATTACCATTAAA+AGG 0.234087 2.2:-65179796 None:intergenic
GTTCTCTCCTTCATGCATTA+AGG 0.253490 2.2:-65180050 None:intergenic
GACTTTGTTCTTTAAAATTT+GGG 0.262231 2.2:-65178319 None:intergenic
TTGCCTGTAAAACATTCATT+AGG 0.266733 2.2:-65179742 None:intergenic
AAAACTTCTTCCAGAGGTTC+TGG 0.278730 2.2:+65177261 MS.gene96230:CDS
ACATTCGCTTCAATTACTTC+TGG 0.279463 2.2:+65178087 MS.gene96230:CDS
GGTGATCACCTCTTTCTTAT+TGG 0.280995 2.2:+65180975 MS.gene96230:CDS
CATGTCCACCTGGTTTGTTT+TGG 0.299573 2.2:+65177814 MS.gene96230:CDS
ACAATCAAAATTTCTTGAAT+TGG 0.300844 2.2:-65180476 None:intergenic
ATGGATTGTTACCCTCTTCT+TGG 0.304577 2.2:-65180527 None:intergenic
GTGTCCACCCTATGGTATTT+GGG 0.305489 2.2:-65180252 None:intergenic
GTCTGGTTTCCTGGTTTGTT+CGG 0.314225 2.2:-65177358 None:intergenic
CTATATCTGACAGAGATTAA+AGG 0.329489 2.2:+65179907 MS.gene96230:intron
TGCTTTCACAATACATTGTA+TGG 0.333962 2.2:-65180318 None:intergenic
TGCAGTATCACATCTTCCTT+TGG 0.337846 2.2:-65179305 None:intergenic
TGCTGTGCCGCCTGTGCATA+AGG 0.340331 2.2:+65180177 MS.gene96230:CDS
ATCCTTAACTTTGGCAAGAA+TGG 0.340508 2.2:+65180382 MS.gene96230:CDS
TCTGTGTACACTTTCTCTAT+TGG 0.344185 2.2:-65180451 None:intergenic
TCTGGTTTCCTGGTTTGTTC+GGG 0.349964 2.2:-65177357 None:intergenic
AGCAGCTCTTCTAATGAATC+AGG 0.350428 2.2:-65180607 None:intergenic
CACTTACATGCTGTTCAACT+TGG 0.353116 2.2:+65178448 MS.gene96230:CDS
TTTCTGACGTATAAGCAAAA+TGG 0.358263 2.2:+65177569 MS.gene96230:CDS
GTGGAAGCATTTGGAGAGAT+TGG 0.359303 2.2:+65179641 MS.gene96230:CDS
TATAATTTATTACAGGCTTT+GGG 0.364885 2.2:+65177487 MS.gene96230:intron
TGCCTGTAAAACATTCATTA+GGG 0.373671 2.2:-65179741 None:intergenic
GCTTCAATTACTTCTGGGTT+AGG 0.376145 2.2:+65178093 MS.gene96230:CDS
CCTCAGGTATCATGTTATTA+GGG 0.384210 2.2:-65180132 None:intergenic
GAGGTTCTGGTTGGACGAAA+TGG 0.387098 2.2:+65177274 MS.gene96230:CDS
GATATCAAATAACATCTCTA+TGG 0.391859 2.2:-65178426 None:intergenic
GGTTTAACAGCATACATCAT+TGG 0.392948 2.2:+65178470 MS.gene96230:CDS
ATGCTTGACCGAATCGCCTT+TGG 0.394681 2.2:-65179048 None:intergenic
GAAGAGCTGCTCAAAATTGC+TGG 0.396916 2.2:+65180619 MS.gene96230:CDS
AGCCATTCTTGCCAAAGTTA+AGG 0.398518 2.2:-65180384 None:intergenic
CTGGTTGGACGAAATGGAAA+TGG 0.400490 2.2:+65177280 MS.gene96230:CDS
ATCACAATCTGTGCATCTCC+TGG 0.408539 2.2:-65179767 None:intergenic
CATTCGCTTCAATTACTTCT+GGG 0.411241 2.2:+65178088 MS.gene96230:CDS
CACCTATACTGAGGATTGAA+TGG 0.411860 2.2:-65177401 None:intergenic
AATCTCGTTCACTGCATTGA+TGG 0.422427 2.2:+65179479 MS.gene96230:CDS
GCAACTGCAGTGGAAGCATT+TGG 0.423214 2.2:+65179632 MS.gene96230:CDS
AATGATATAGGTTTCAGAAA+TGG 0.426448 2.2:+65179265 MS.gene96230:intron
TTGCCAAAGTTAAGGATTTG+TGG 0.428936 2.2:-65180376 None:intergenic
AGTAGTGAAGAGGAGACTAA+TGG 0.429345 2.2:-65177864 None:intergenic
ACCTATACTGAGGATTGAAT+GGG 0.438329 2.2:-65177400 None:intergenic
GATACGTAACTTCAATATAC+TGG 0.441167 2.2:+65178351 MS.gene96230:CDS
CTTGCCATTTCTATGTCACT+TGG 0.444479 2.2:-65180499 None:intergenic
TCCTACAGACATTTATGTAC+TGG 0.448321 2.2:+65179337 MS.gene96230:CDS
GTCAGAAAGGCAAACTCAAA+GGG 0.457107 2.2:-65177554 None:intergenic
GAGCCACAAATCCTTAACTT+TGG 0.459120 2.2:+65180373 MS.gene96230:CDS
TTCTAGTCATATACTCAGCT+TGG 0.460135 2.2:+65177525 MS.gene96230:CDS
GCTGTGCCGCCTGTGCATAA+GGG 0.461101 2.2:+65180178 MS.gene96230:CDS
GCTATGTTTCAGACTCGAAA+AGG 0.469567 2.2:+65178064 MS.gene96230:intron
ATAATAGACAACATTGTCAA+TGG 0.473596 2.2:+65177599 MS.gene96230:CDS
ATGATCTTCCAAAGGCGATT+CGG 0.475082 2.2:+65179040 MS.gene96230:CDS
GGAAGTCATTGGAGACTCCT+TGG 0.475455 2.2:-65179116 None:intergenic
TTCTCCATCCACTTGGCGAA+TGG 0.477586 2.2:-65180546 None:intergenic
ACTACTTATGACAGTGAGCT+TGG 0.480046 2.2:+65177881 MS.gene96230:CDS
CTCAACCCGAAACAGTAAAC+AGG 0.480735 2.2:+65180405 MS.gene96230:CDS
AGTGATCTTCTACCATCTCT+TGG 0.481192 2.2:+65177332 MS.gene96230:CDS
GTAGTGAAGAGGAGACTAAT+GGG 0.481646 2.2:-65177863 None:intergenic
TTGTCCAAGTGACATAGAAA+TGG 0.483298 2.2:+65180495 MS.gene96230:CDS
GAATATCCACACACAGATCA+TGG 0.487220 2.2:+65179950 MS.gene96230:CDS
TGTTGGCACACATTTGTTTG+AGG 0.487645 2.2:+65178980 MS.gene96230:CDS
ACAGAGAACTGACTCGTCTC+AGG 0.489086 2.2:-65177937 None:intergenic
ACCCTGATTCTAAAAGAACT+TGG 0.492607 2.2:+65178282 MS.gene96230:CDS
TTTCGTCCAACCAGAACCTC+TGG 0.495129 2.2:-65177271 None:intergenic
TTCCTTTGGTGGGAAATACT+CGG 0.496198 2.2:-65179291 None:intergenic
AGTATCACATCTTCCTTTGG+TGG 0.498761 2.2:-65179302 None:intergenic
AGGTAGACCTTCTGCACGAC+AGG 0.500630 2.2:-65179090 None:intergenic
CTTCTTCCAGAGGTTCTGGT+TGG 0.501625 2.2:+65177265 MS.gene96230:CDS
CCCCATTCAATCCTCAGTAT+AGG 0.503381 2.2:+65177399 MS.gene96230:CDS
GATCACCTCTTTCTTATTGG+CGG 0.505634 2.2:+65180978 MS.gene96230:CDS
TGACTAACCTTGTAGTTCAC+TGG 0.508132 2.2:+65178498 MS.gene96230:CDS
CTCCTTCATGCATTAAGGAA+TGG 0.509079 2.2:-65180045 None:intergenic
CAATCCATTCGCCAAGTGGA+TGG 0.515545 2.2:+65180542 MS.gene96230:CDS
ATCTCGTTCACTGCATTGAT+GGG 0.518997 2.2:+65179480 MS.gene96230:CDS
TTGGTTCTATATAAATTGCT+AGG 0.520308 2.2:+65179974 MS.gene96230:CDS
TTGTTTGCAGTGCACTGTGC+AGG 0.521813 2.2:+65178230 MS.gene96230:CDS
TTTGTTCGGGCGCCAAGAGA+TGG 0.523096 2.2:-65177344 None:intergenic
ATCGTCACGCTTACTACCAC+TGG 0.523432 2.2:+65178377 MS.gene96230:CDS
CGTCAGAAAGGCAAACTCAA+AGG 0.525022 2.2:-65177555 None:intergenic
CTGTGCCGCCTGTGCATAAG+GGG 0.526636 2.2:+65180179 MS.gene96230:CDS
CACTGTCATAAGTAGTGAAG+AGG 0.536117 2.2:-65177874 None:intergenic
CAGTTGGAAAAGGAAGTCAT+TGG 0.537816 2.2:-65179127 None:intergenic
TATCACCGCCAATAAGAAAG+AGG 0.541259 2.2:-65180983 None:intergenic
TCTAGTTTCCCCTTATGCAC+AGG 0.542156 2.2:-65180187 None:intergenic
GCACAGGCGGCACAGCAGCA+TGG 0.543026 2.2:-65180171 None:intergenic
ACTTACATGCTGTTCAACTT+GGG 0.543072 2.2:+65178449 MS.gene96230:CDS
TCTGTAGTTCGAACTGTGAA+AGG 0.543170 2.2:-65179686 None:intergenic
GAGTCAGTTCTCTGTTTGCA+AGG 0.546900 2.2:+65177945 MS.gene96230:CDS
GGGGTATTACCAGTTGGAAA+AGG 0.546901 2.2:-65179137 None:intergenic
TGGTTGGACGAAATGGAAAT+GGG 0.547226 2.2:+65177281 MS.gene96230:CDS
GACATTGATGTCATTAGAGA+TGG 0.549773 2.2:+65180954 MS.gene96230:CDS
TGCACAGTGCACTGCAAACA+AGG 0.552915 2.2:-65178228 None:intergenic
ACGCTTACTACCACTGGCTA+TGG 0.553126 2.2:+65178383 MS.gene96230:CDS
GCACAGAACCCAAATACCAT+AGG 0.553388 2.2:+65180244 MS.gene96230:CDS
GAACGTAAGCACGATGTCGA+TGG 0.554490 2.2:-65177630 None:intergenic
CATGTAGTTACATGTCCACC+TGG 0.555978 2.2:+65177804 MS.gene96230:intron
TCTTGGCGCCCGAACAAACC+AGG 0.556962 2.2:+65177349 MS.gene96230:CDS
GTATCACATCTTCCTTTGGT+GGG 0.558039 2.2:-65179301 None:intergenic
TGTTTGAGGTTTAAAACAGA+AGG 0.561867 2.2:+65178994 MS.gene96230:CDS
GATTCTAAAAGAACTTGGAT+AGG 0.564438 2.2:+65178287 MS.gene96230:CDS
CATTGGAGACTCCTTGGAAG+AGG 0.567411 2.2:-65179110 None:intergenic
GGCCATTCCTTAATGCATGA+AGG 0.576044 2.2:+65180043 MS.gene96230:CDS
AGGAGACTAATGGGCTCAAG+TGG 0.586925 2.2:-65177854 None:intergenic
GAGTCTACAAATAATTTACA+TGG 0.590590 2.2:+65180022 MS.gene96230:CDS
CAGAAGGTCTACCTCTTCCA+AGG 0.591913 2.2:+65179099 MS.gene96230:CDS
CACAGAACCCAAATACCATA+GGG 0.592525 2.2:+65180245 MS.gene96230:CDS
GGCAAGGTTCACCAAGAAGA+GGG 0.593694 2.2:+65180516 MS.gene96230:CDS
TCCACACACAGATCATGGAT+TGG 0.597717 2.2:+65179955 MS.gene96230:CDS
GGATGGAGAAGTAGCTCACA+TGG 0.605702 2.2:+65180559 MS.gene96230:CDS
AGCATTAAATGATCTTCCAA+AGG 0.608942 2.2:+65179032 MS.gene96230:CDS
GAGCTACTTCTCCATCCACT+TGG 0.609891 2.2:-65180553 None:intergenic
AGCCGAGTATTTCCCACCAA+AGG 0.611493 2.2:+65179289 MS.gene96230:CDS
TGGCAAGGTTCACCAAGAAG+AGG 0.615773 2.2:+65180515 MS.gene96230:CDS
TCGCGTACACAATCAAATGT+TGG 0.618917 2.2:+65178963 MS.gene96230:CDS
CAGAGATTAAAGGAGCGTGA+AGG 0.621845 2.2:+65179917 MS.gene96230:intron
ATTTGATTGTGTACGCGACG+TGG 0.622706 2.2:-65178958 None:intergenic
TGTACTGGTTTCAGGCGCAG+TGG 0.622748 2.2:+65179352 MS.gene96230:CDS
GTTCGAACTGTGAAAGGCTG+TGG 0.623207 2.2:-65179680 None:intergenic
GACTGGTCCAGTGAACTACA+AGG 0.630276 2.2:-65178505 None:intergenic
AGTAGCTCACATGGACAGCA+CGG 0.633141 2.2:+65180568 MS.gene96230:CDS
CAAGTGACATAGAAATGGCA+AGG 0.635277 2.2:+65180500 MS.gene96230:CDS
AGTTTCCCCTTATGCACAGG+CGG 0.636356 2.2:-65180184 None:intergenic
AATAACATGATACCTGAGGA+TGG 0.636817 2.2:+65180136 MS.gene96230:CDS
ATCCAAAGAAAATTGCAACC+AGG 0.642767 2.2:+65177696 MS.gene96230:CDS
ACCAGTACATAAATGTCTGT+AGG 0.647308 2.2:-65179338 None:intergenic
GCTCTTCTAATGAATCAGGT+AGG 0.648781 2.2:-65180603 None:intergenic
GTAACAATCCATTCGCCAAG+TGG 0.651845 2.2:+65180538 MS.gene96230:CDS
CCCTAATAACATGATACCTG+AGG 0.670461 2.2:+65180132 MS.gene96230:CDS
ACCAATCCATGATCTGTGTG+TGG 0.672562 2.2:-65179956 None:intergenic
GCAGATATCCAAAACAAACC+AGG 0.680140 2.2:-65177822 None:intergenic
AGAACCCAAATACCATAGGG+TGG 0.680575 2.2:+65180248 MS.gene96230:CDS
ATGTAAATCTCCATAGCCAG+TGG 0.680944 2.2:-65178393 None:intergenic
TCAGAAAGGCAAACTCAAAG+GGG 0.689808 2.2:-65177553 None:intergenic
CCTATACTGAGGATTGAATG+GGG 0.693402 2.2:-65177399 None:intergenic
ACCCGAAACAGTAAACAGGA+CGG 0.696148 2.2:+65180409 MS.gene96230:CDS
AAAGGTCATCACCTATACTG+AGG 0.699640 2.2:-65177410 None:intergenic
GAAGAGAAGAATGACTATCG+TGG 0.704476 2.2:-65177664 None:intergenic
GATATCCAAAACAAACCAGG+TGG 0.711945 2.2:-65177819 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATCATAAAAATAAAAAAG+GGG - chr2.2:65180752-65180771 None:intergenic 10.0%
!! AAATAAAATAAAAAGACATG+TGG - chr2.2:65179161-65179180 None:intergenic 15.0%
!! AATAAAATAAAAAGACATGT+GGG - chr2.2:65179160-65179179 None:intergenic 15.0%
!! AATCATAAAAATAAAAAAGG+GGG - chr2.2:65180751-65180770 None:intergenic 15.0%
!! ATATCTTAATTACCATTAAA+AGG - chr2.2:65179799-65179818 None:intergenic 15.0%
!! TATAAAATTATTATAGCATG+TGG - chr2.2:65178600-65178619 None:intergenic 15.0%
!! TTATATTTATCAATCATAGT+AGG + chr2.2:65179860-65179879 MS.gene96230:intron 15.0%
!! TTTCATGTATAATTTATTAC+AGG + chr2.2:65177480-65177499 MS.gene96230:intron 15.0%
!!! ATTTTATATTATACATGTGT+TGG + chr2.2:65178612-65178631 MS.gene96230:intron 15.0%
!!! CTCTTTATTAATTATTTTTG+TGG - chr2.2:65180919-65180938 None:intergenic 15.0%
!! ACAATCAAAATTTCTTGAAT+TGG - chr2.2:65180479-65180498 None:intergenic 20.0%
!! AGAAATTTGAAAAGTAAGTA+GGG - chr2.2:65177778-65177797 None:intergenic 20.0%
!! ATAAAATAAAAAGACATGTG+GGG - chr2.2:65179159-65179178 None:intergenic 20.0%
!! ATCATAAAAATAAAAAAGGG+GGG - chr2.2:65180750-65180769 None:intergenic 20.0%
!! TAGAAATTTGAAAAGTAAGT+AGG - chr2.2:65177779-65177798 None:intergenic 20.0%
!! TATAATTTATTACAGGCTTT+GGG + chr2.2:65177487-65177506 MS.gene96230:intron 20.0%
!! TTATATCTATATATATCACC+TGG - chr2.2:65177717-65177736 None:intergenic 20.0%
!!! AGACTTTGTTCTTTAAAATT+TGG - chr2.2:65178323-65178342 None:intergenic 20.0%
!!! ATTTTAAAGAACAAAGTCTT+TGG + chr2.2:65178324-65178343 MS.gene96230:CDS 20.0%
!!! ATTTTTATGATTTTTGCTGA+GGG + chr2.2:65180759-65180778 MS.gene96230:intron 20.0%
!!! CATTCTTTAAGATTCATTTA+TGG - chr2.2:65179409-65179428 None:intergenic 20.0%
!!! GAAAGTACTTACAAAATTTT+GGG - chr2.2:65178534-65178553 None:intergenic 20.0%
!!! GACTTTGTTCTTTAAAATTT+GGG - chr2.2:65178322-65178341 None:intergenic 20.0%
!!! TATTTTTATGATTTTTGCTG+AGG + chr2.2:65180758-65180777 MS.gene96230:intron 20.0%
!!! TGAAAGTACTTACAAAATTT+TGG - chr2.2:65178535-65178554 None:intergenic 20.0%
!!! TTTTAAAGAACAAAGTCTTT+GGG + chr2.2:65178325-65178344 MS.gene96230:CDS 20.0%
! AAGAATTGTGACTATGTAAA+AGG - chr2.2:65177431-65177450 None:intergenic 25.0%
! AATGATATAGGTTTCAGAAA+TGG + chr2.2:65179265-65179284 MS.gene96230:intron 25.0%
! ATAATAGACAACATTGTCAA+TGG + chr2.2:65177599-65177618 MS.gene96230:CDS 25.0%
! CTATATCATTAGAGTTACTT+GGG - chr2.2:65179255-65179274 None:intergenic 25.0%
! GAGTCTACAAATAATTTACA+TGG + chr2.2:65180022-65180041 MS.gene96230:CDS 25.0%
! GATATCAAATAACATCTCTA+TGG - chr2.2:65178429-65178448 None:intergenic 25.0%
! GTATAATTTATTACAGGCTT+TGG + chr2.2:65177486-65177505 MS.gene96230:intron 25.0%
! TAGCTGACAAAAATAACTTA+TGG - chr2.2:65178801-65178820 None:intergenic 25.0%
! TATATCATTAGAGTTACTTG+GGG - chr2.2:65179254-65179273 None:intergenic 25.0%
! TATCCTTACATTAACAATTC+AGG + chr2.2:65179595-65179614 MS.gene96230:intron 25.0%
! TGAAATTAAATTTGACATGC+TGG - chr2.2:65177975-65177994 None:intergenic 25.0%
! TGAATTGTTAATGTAAGGAT+AGG - chr2.2:65179596-65179615 None:intergenic 25.0%
! TTCCTCTTTCAAAAAATTTC+AGG + chr2.2:65178202-65178221 MS.gene96230:intron 25.0%
! TTGAAATTGTATAGGAAGTA+GGG - chr2.2:65178162-65178181 None:intergenic 25.0%
!! CAAATTTAATTTCATGGTTC+AGG + chr2.2:65177981-65178000 MS.gene96230:intron 25.0%
!! GCATGTCAAATTTAATTTCA+TGG + chr2.2:65177975-65177994 MS.gene96230:intron 25.0%
!! GTAACTAACTTTTTGAACAT+TGG - chr2.2:65178688-65178707 None:intergenic 25.0%
!! TAATAAGAGAGGATTCATTT+TGG + chr2.2:65178881-65178900 MS.gene96230:intron 25.0%
!! TATTATGTATTTTCGTAGTC+TGG - chr2.2:65177378-65177397 None:intergenic 25.0%
!! TGTGATGAATAACCTTTTAA+TGG + chr2.2:65179784-65179803 MS.gene96230:CDS 25.0%
!!! CAGATTATTGCATTTGATTT+TGG - chr2.2:65180803-65180822 None:intergenic 25.0%
!!! GACATTCATTTTAGTTTCTA+AGG - chr2.2:65177749-65177768 None:intergenic 25.0%
!!! TAACTTTTTGAACATTGGTT+TGG - chr2.2:65178683-65178702 None:intergenic 25.0%
!!! TACCTGAAATTTTTTGAAAG+AGG - chr2.2:65178207-65178226 None:intergenic 25.0%
!!! TTGGTTCTATATAAATTGCT+AGG + chr2.2:65179974-65179993 MS.gene96230:CDS 25.0%
AAAAATAAAAAAGGGGGGTT+GGG - chr2.2:65180745-65180764 None:intergenic 30.0%
AAAACTGCAGGTGAAAAATT+TGG + chr2.2:65180882-65180901 MS.gene96230:intron 30.0%
AAAGCTTCTAAACTCAACAT+GGG + chr2.2:65179821-65179840 MS.gene96230:intron 30.0%
AAATTATTATAGCATGTGGC+TGG - chr2.2:65178596-65178615 None:intergenic 30.0%
AACTAATGTTCCTCAGTTAT+AGG - chr2.2:65180657-65180676 None:intergenic 30.0%
ACTAATGTTCCTCAGTTATA+GGG - chr2.2:65180656-65180675 None:intergenic 30.0%
AGATATACTTGACAATTGTG+GGG - chr2.2:65178731-65178750 None:intergenic 30.0%
AGCATTAAATGATCTTCCAA+AGG + chr2.2:65179032-65179051 MS.gene96230:CDS 30.0%
ATGAATCCTCTCTTATTAAG+AGG - chr2.2:65178879-65178898 None:intergenic 30.0%
CAGATATACTTGACAATTGT+GGG - chr2.2:65178732-65178751 None:intergenic 30.0%
CCAAGTAACTCTAATGATAT+AGG + chr2.2:65179253-65179272 MS.gene96230:intron 30.0%
CCTATATCATTAGAGTTACT+TGG - chr2.2:65179256-65179275 None:intergenic 30.0%
CTACTTCCTATACAATTTCA+AGG + chr2.2:65178161-65178180 MS.gene96230:intron 30.0%
CTATATCTGACAGAGATTAA+AGG + chr2.2:65179907-65179926 MS.gene96230:intron 30.0%
CTTGAAATTGTATAGGAAGT+AGG - chr2.2:65178163-65178182 None:intergenic 30.0%
GATACGTAACTTCAATATAC+TGG + chr2.2:65178351-65178370 MS.gene96230:CDS 30.0%
GATATAGATCACACATGATT+AGG - chr2.2:65179894-65179913 None:intergenic 30.0%
GTTAGTTACAAATACAGTGT+AGG + chr2.2:65178699-65178718 MS.gene96230:intron 30.0%
TAAAAATAAAAAAGGGGGGT+TGG - chr2.2:65180746-65180765 None:intergenic 30.0%
TCAGATATACTTGACAATTG+TGG - chr2.2:65178733-65178752 None:intergenic 30.0%
TGAAATTGTATAGGAAGTAG+GGG - chr2.2:65178161-65178180 None:intergenic 30.0%
TGAATCCTCTCTTATTAAGA+GGG - chr2.2:65178878-65178897 None:intergenic 30.0%
TGCCTGTAAAACATTCATTA+GGG - chr2.2:65179744-65179763 None:intergenic 30.0%
TGCTTTCACAATACATTGTA+TGG - chr2.2:65180321-65180340 None:intergenic 30.0%
TTCTTAACATGTTGCGATTA+TGG + chr2.2:65177912-65177931 MS.gene96230:CDS 30.0%
TTGCCTGTAAAACATTCATT+AGG - chr2.2:65179745-65179764 None:intergenic 30.0%
TTTCTGACGTATAAGCAAAA+TGG + chr2.2:65177569-65177588 MS.gene96230:CDS 30.0%
! ATCCCTAATGAATGTTTTAC+AGG + chr2.2:65179739-65179758 MS.gene96230:CDS 30.0%
! ATTTTGCTTATACGTCAGAA+AGG - chr2.2:65177570-65177589 None:intergenic 30.0%
! GATTCTAAAAGAACTTGGAT+AGG + chr2.2:65178287-65178306 MS.gene96230:CDS 30.0%
! TGTTTGAGGTTTAAAACAGA+AGG + chr2.2:65178994-65179013 MS.gene96230:CDS 30.0%
!! GTTTGGATAATAGCTTTGAA+GGG - chr2.2:65178666-65178685 None:intergenic 30.0%
!!! ATCCAAGTTCTTTTAGAATC+AGG - chr2.2:65178287-65178306 None:intergenic 30.0%
!!! TCCAAGTTCTTTTAGAATCA+GGG - chr2.2:65178286-65178305 None:intergenic 30.0%
AAAATAAAAAAGGGGGGTTG+GGG - chr2.2:65180744-65180763 None:intergenic 35.0%
AACTTAACATGAAACTCGAG+AGG - chr2.2:65178776-65178795 None:intergenic 35.0%
AAGCTTCTAAACTCAACATG+GGG + chr2.2:65179822-65179841 MS.gene96230:intron 35.0%
AATAACATGATACCTGAGGA+TGG + chr2.2:65180136-65180155 MS.gene96230:CDS 35.0%
ACATTCGCTTCAATTACTTC+TGG + chr2.2:65178087-65178106 MS.gene96230:CDS 35.0%
ACCAGTACATAAATGTCTGT+AGG - chr2.2:65179341-65179360 None:intergenic 35.0%
ACCTATACTGAGGATTGAAT+GGG - chr2.2:65177403-65177422 None:intergenic 35.0%
ACTTACATGCTGTTCAACTT+GGG + chr2.2:65178449-65178468 MS.gene96230:CDS 35.0%
ATCCAAAGAAAATTGCAACC+AGG + chr2.2:65177696-65177715 MS.gene96230:CDS 35.0%
ATCCTTAACTTTGGCAAGAA+TGG + chr2.2:65180382-65180401 MS.gene96230:CDS 35.0%
CAAAAACTCGTTCAGATAAG+AGG + chr2.2:65178839-65178858 MS.gene96230:intron 35.0%
CAAAGCTTCTAAACTCAACA+TGG + chr2.2:65179820-65179839 MS.gene96230:intron 35.0%
CATTCGCTTCAATTACTTCT+GGG + chr2.2:65178088-65178107 MS.gene96230:CDS 35.0%
CCACCTGAATTGTTAATGTA+AGG - chr2.2:65179601-65179620 None:intergenic 35.0%
CCTCAGGTATCATGTTATTA+GGG - chr2.2:65180135-65180154 None:intergenic 35.0%
CCTTACATTAACAATTCAGG+TGG + chr2.2:65179598-65179617 MS.gene96230:intron 35.0%
GAAAGAGGAAATTCAGTTCT+TGG - chr2.2:65178192-65178211 None:intergenic 35.0%
GACATTGATGTCATTAGAGA+TGG + chr2.2:65180954-65180973 MS.gene96230:CDS 35.0%
GATCACACATGATTAGGATT+AGG - chr2.2:65179888-65179907 None:intergenic 35.0%
GATGTGCCTTGAAATTGTAT+AGG - chr2.2:65178170-65178189 None:intergenic 35.0%
GGTTTAACAGCATACATCAT+TGG + chr2.2:65178470-65178489 MS.gene96230:CDS 35.0%
TACAAATACAGTGTAGGACT+AGG + chr2.2:65178705-65178724 MS.gene96230:intron 35.0%
TCCTACAGACATTTATGTAC+TGG + chr2.2:65179337-65179356 MS.gene96230:CDS 35.0%
TCCTCAGGTATCATGTTATT+AGG - chr2.2:65180136-65180155 None:intergenic 35.0%
TCTGTGTACACTTTCTCTAT+TGG - chr2.2:65180454-65180473 None:intergenic 35.0%
TTCTAGTCATATACTCAGCT+TGG + chr2.2:65177525-65177544 MS.gene96230:CDS 35.0%
TTCTTCCCTCTTAATAAGAG+AGG + chr2.2:65178870-65178889 MS.gene96230:intron 35.0%
TTGCCAAAGTTAAGGATTTG+TGG - chr2.2:65180379-65180398 None:intergenic 35.0%
TTGTCCAAGTGACATAGAAA+TGG + chr2.2:65180495-65180514 MS.gene96230:CDS 35.0%
! AATGTTTTACAGGCAAATCC+AGG + chr2.2:65179749-65179768 MS.gene96230:CDS 35.0%
! ACCCTGATTCTAAAAGAACT+TGG + chr2.2:65178282-65178301 MS.gene96230:CDS 35.0%
! TATGATTTTTGCTGAGGGAA+GGG + chr2.2:65180764-65180783 MS.gene96230:intron 35.0%
! TTATGATTTTTGCTGAGGGA+AGG + chr2.2:65180763-65180782 MS.gene96230:intron 35.0%
!! CTATTAACTTGCAAAACTGC+AGG + chr2.2:65180870-65180889 MS.gene96230:intron 35.0%
!! GACATTTATGTACTGGTTTC+AGG + chr2.2:65179344-65179363 MS.gene96230:CDS 35.0%
!! GGTTTGGATAATAGCTTTGA+AGG - chr2.2:65178667-65178686 None:intergenic 35.0%
!!! CTTCTTGCTTTTAACTTAGC+CGG - chr2.2:65179204-65179223 None:intergenic 35.0%
!!! TTCACTTTTTGTCTCTTCTC+CGG + chr2.2:65179182-65179201 MS.gene96230:intron 35.0%
AAAACTTCTTCCAGAGGTTC+TGG + chr2.2:65177261-65177280 MS.gene96230:CDS 40.0%
AAACTCGAGAGGATTGTACT+AGG - chr2.2:65178765-65178784 None:intergenic 40.0%
AAAGGTCATCACCTATACTG+AGG - chr2.2:65177413-65177432 None:intergenic 40.0%
AAATAAAAAAGGGGGGTTGG+GGG - chr2.2:65180743-65180762 None:intergenic 40.0%
AATCTCGTTCACTGCATTGA+TGG + chr2.2:65179479-65179498 MS.gene96230:CDS 40.0%
ACTACTTATGACAGTGAGCT+TGG + chr2.2:65177881-65177900 MS.gene96230:CDS 40.0%
ACTGCAGGTGAAAAATTTGG+CGG + chr2.2:65180885-65180904 MS.gene96230:intron 40.0%
AGCAGCTCTTCTAATGAATC+AGG - chr2.2:65180610-65180629 None:intergenic 40.0%
AGCCATTCTTGCCAAAGTTA+AGG - chr2.2:65180387-65180406 None:intergenic 40.0%
AGTAGTGAAGAGGAGACTAA+TGG - chr2.2:65177867-65177886 None:intergenic 40.0%
AGTATCACATCTTCCTTTGG+TGG - chr2.2:65179305-65179324 None:intergenic 40.0%
AGTGATCTTCTACCATCTCT+TGG + chr2.2:65177332-65177351 MS.gene96230:CDS 40.0%
ATGATCTTCCAAAGGCGATT+CGG + chr2.2:65179040-65179059 MS.gene96230:CDS 40.0%
ATGTAAATCTCCATAGCCAG+TGG - chr2.2:65178396-65178415 None:intergenic 40.0%
CAAGTGACATAGAAATGGCA+AGG + chr2.2:65180500-65180519 MS.gene96230:CDS 40.0%
CACAGAACCCAAATACCATA+GGG + chr2.2:65180245-65180264 MS.gene96230:CDS 40.0%
CACCTATACTGAGGATTGAA+TGG - chr2.2:65177404-65177423 None:intergenic 40.0%
CACTGTCATAAGTAGTGAAG+AGG - chr2.2:65177877-65177896 None:intergenic 40.0%
CACTTACATGCTGTTCAACT+TGG + chr2.2:65178448-65178467 MS.gene96230:CDS 40.0%
CAGTTGGAAAAGGAAGTCAT+TGG - chr2.2:65179130-65179149 None:intergenic 40.0%
CCCTAATAACATGATACCTG+AGG + chr2.2:65180132-65180151 MS.gene96230:CDS 40.0%
CCTATACTGAGGATTGAATG+GGG - chr2.2:65177402-65177421 None:intergenic 40.0%
CTCCTTCATGCATTAAGGAA+TGG - chr2.2:65180048-65180067 None:intergenic 40.0%
GAAGAGAAGAATGACTATCG+TGG - chr2.2:65177667-65177686 None:intergenic 40.0%
GAATATCCACACACAGATCA+TGG + chr2.2:65179950-65179969 MS.gene96230:CDS 40.0%
GAGCCACAAATCCTTAACTT+TGG + chr2.2:65180373-65180392 MS.gene96230:CDS 40.0%
GATATCCAAAACAAACCAGG+TGG - chr2.2:65177822-65177841 None:intergenic 40.0%
GATCACCTCTTTCTTATTGG+CGG + chr2.2:65180978-65180997 MS.gene96230:CDS 40.0%
GCAGATATCCAAAACAAACC+AGG - chr2.2:65177825-65177844 None:intergenic 40.0%
GCTATGTTTCAGACTCGAAA+AGG + chr2.2:65178064-65178083 MS.gene96230:intron 40.0%
GCTCTTCTAATGAATCAGGT+AGG - chr2.2:65180606-65180625 None:intergenic 40.0%
GCTTCAATTACTTCTGGGTT+AGG + chr2.2:65178093-65178112 MS.gene96230:CDS 40.0%
GGGGAGTTTATGAGGTTTAA+TGG - chr2.2:65178142-65178161 None:intergenic 40.0%
GGGTCAGATGTTGAAACTTT+AGG - chr2.2:65179234-65179253 None:intergenic 40.0%
GGTGATCACCTCTTTCTTAT+TGG + chr2.2:65180975-65180994 MS.gene96230:CDS 40.0%
GTAGTGAAGAGGAGACTAAT+GGG - chr2.2:65177866-65177885 None:intergenic 40.0%
GTATCACATCTTCCTTTGGT+GGG - chr2.2:65179304-65179323 None:intergenic 40.0%
GTCAGAAAGGCAAACTCAAA+GGG - chr2.2:65177557-65177576 None:intergenic 40.0%
GTCTCAAAAACTTCTTCCAG+AGG + chr2.2:65177255-65177274 MS.gene96230:CDS 40.0%
GTTCTCTCCTTCATGCATTA+AGG - chr2.2:65180053-65180072 None:intergenic 40.0%
TACCGTCCTGTTTACTGTTT+CGG - chr2.2:65180414-65180433 None:intergenic 40.0%
TATCACCGCCAATAAGAAAG+AGG - chr2.2:65180986-65181005 None:intergenic 40.0%
TCAGAAAGGCAAACTCAAAG+GGG - chr2.2:65177556-65177575 None:intergenic 40.0%
TCGCGTACACAATCAAATGT+TGG + chr2.2:65178963-65178982 MS.gene96230:CDS 40.0%
TCTGTAGTTCGAACTGTGAA+AGG - chr2.2:65179689-65179708 None:intergenic 40.0%
TGACTAACCTTGTAGTTCAC+TGG + chr2.2:65178498-65178517 MS.gene96230:CDS 40.0%
TGCAGTATCACATCTTCCTT+TGG - chr2.2:65179308-65179327 None:intergenic 40.0%
TGGTTGGACGAAATGGAAAT+GGG + chr2.2:65177281-65177300 MS.gene96230:CDS 40.0%
TGTTGGCACACATTTGTTTG+AGG + chr2.2:65178980-65178999 MS.gene96230:CDS 40.0%
TTCCTTTGGTGGGAAATACT+CGG - chr2.2:65179294-65179313 None:intergenic 40.0%
! ACATAGCAAAGGTGCAAGTA+AGG - chr2.2:65178051-65178070 None:intergenic 40.0%
! AGCATTGAACCCTATAACTG+AGG + chr2.2:65180644-65180663 MS.gene96230:intron 40.0%
! ATCTCGTTCACTGCATTGAT+GGG + chr2.2:65179480-65179499 MS.gene96230:CDS 40.0%
! ATGGATTGTTACCCTCTTCT+TGG - chr2.2:65180530-65180549 None:intergenic 40.0%
! CAATGACTTCCTTTTCCAAC+TGG + chr2.2:65179128-65179147 MS.gene96230:CDS 40.0%
! CACCTGGTTGCAATTTTCTT+TGG - chr2.2:65177701-65177720 None:intergenic 40.0%
! CTTGCCATTTCTATGTCACT+TGG - chr2.2:65180502-65180521 None:intergenic 40.0%
! TCGAGTCTGAAACATAGCAA+AGG - chr2.2:65178062-65178081 None:intergenic 40.0%
! TTTTGACAAAGCAACTGCAG+TGG + chr2.2:65179622-65179641 MS.gene96230:CDS 40.0%
!! AGGATTCATTTTGGTCACAG+AGG + chr2.2:65178890-65178909 MS.gene96230:intron 40.0%
!! ATTTTCGTAGTCTGGTTTCC+TGG - chr2.2:65177370-65177389 None:intergenic 40.0%
!! GGATTCATTTTGGTCACAGA+GGG + chr2.2:65178891-65178910 MS.gene96230:intron 40.0%
!! TACAAAATTTTGGGTGCGAC+TGG - chr2.2:65178525-65178544 None:intergenic 40.0%
!!! CTGGAAGAAGTTTTTGAGAC+TGG - chr2.2:65177255-65177274 None:intergenic 40.0%
AATAAAAAAGGGGGGTTGGG+GGG - chr2.2:65180742-65180761 None:intergenic 45.0%
ACCAATCCATGATCTGTGTG+TGG - chr2.2:65179959-65179978 None:intergenic 45.0%
ACCCGAAACAGTAAACAGGA+CGG + chr2.2:65180409-65180428 MS.gene96230:CDS 45.0%
ACCGTCCTGTTTACTGTTTC+GGG - chr2.2:65180413-65180432 None:intergenic 45.0%
AGAACCCAAATACCATAGGG+TGG + chr2.2:65180248-65180267 MS.gene96230:CDS 45.0%
AGGAAGTAGGGGAGTTTATG+AGG - chr2.2:65178150-65178169 None:intergenic 45.0%
ATCACAATCTGTGCATCTCC+TGG - chr2.2:65179770-65179789 None:intergenic 45.0%
ATTTGATTGTGTACGCGACG+TGG - chr2.2:65178961-65178980 None:intergenic 45.0%
CATGTAGTTACATGTCCACC+TGG + chr2.2:65177804-65177823 MS.gene96230:intron 45.0%
CCCCATTCAATCCTCAGTAT+AGG + chr2.2:65177399-65177418 MS.gene96230:CDS 45.0%
CGTCAGAAAGGCAAACTCAA+AGG - chr2.2:65177558-65177577 None:intergenic 45.0%
CTCAACCCGAAACAGTAAAC+AGG + chr2.2:65180405-65180424 MS.gene96230:CDS 45.0%
CTGGTTGGACGAAATGGAAA+TGG + chr2.2:65177280-65177299 MS.gene96230:CDS 45.0%
GAAGAGCTGCTCAAAATTGC+TGG + chr2.2:65180619-65180638 MS.gene96230:CDS 45.0%
GAGTCAGTTCTCTGTTTGCA+AGG + chr2.2:65177945-65177964 MS.gene96230:CDS 45.0%
GCACAGAACCCAAATACCAT+AGG + chr2.2:65180244-65180263 MS.gene96230:CDS 45.0%
GCACGACAGGAAAAAAGAGA+TGG - chr2.2:65179080-65179099 None:intergenic 45.0%
GGCCATTCCTTAATGCATGA+AGG + chr2.2:65180043-65180062 MS.gene96230:CDS 45.0%
GTAACAATCCATTCGCCAAG+TGG + chr2.2:65180538-65180557 MS.gene96230:CDS 45.0%
GTGTCCACCCTATGGTATTT+GGG - chr2.2:65180255-65180274 None:intergenic 45.0%
TCCACACACAGATCATGGAT+TGG + chr2.2:65179955-65179974 MS.gene96230:CDS 45.0%
TGTGTCCACCCTATGGTATT+TGG - chr2.2:65180256-65180275 None:intergenic 45.0%
! ACATGTGGGGTATTACCAGT+TGG - chr2.2:65179146-65179165 None:intergenic 45.0%
! AGATCTCTTTTGCCATCCTC+AGG - chr2.2:65180151-65180170 None:intergenic 45.0%
! AGCTTTTTGTGTCCACCCTA+TGG - chr2.2:65180263-65180282 None:intergenic 45.0%
! CAGAGATTAAAGGAGCGTGA+AGG + chr2.2:65179917-65179936 MS.gene96230:intron 45.0%
! GCAAGTAAGGAAGAAAGCAC+TGG - chr2.2:65178038-65178057 None:intergenic 45.0%
! GGGGTATTACCAGTTGGAAA+AGG - chr2.2:65179140-65179159 None:intergenic 45.0%
! TCTAGTTTCCCCTTATGCAC+AGG - chr2.2:65180190-65180209 None:intergenic 45.0%
!! GTCTGGTTTCCTGGTTTGTT+CGG - chr2.2:65177361-65177380 None:intergenic 45.0%
!! GTGGAAGCATTTGGAGAGAT+TGG + chr2.2:65179641-65179660 MS.gene96230:CDS 45.0%
!! TCTGGTTTCCTGGTTTGTTC+GGG - chr2.2:65177360-65177379 None:intergenic 45.0%
!!! CATGTCCACCTGGTTTGTTT+TGG + chr2.2:65177814-65177833 MS.gene96230:CDS 45.0%
!!! CTTTTTTCCTGTCGTGCAGA+AGG + chr2.2:65179083-65179102 MS.gene96230:CDS 45.0%
!! AAAAATCATAAAAATAAAAA+AGG - chr2.2:65180754-65180773 None:intergenic 5.0%
!! AAAATCATAAAAATAAAAAA+GGG - chr2.2:65180753-65180772 None:intergenic 5.0%
ACACACGCATACACACACGT+GGG + chr2.2:65180679-65180698 MS.gene96230:intron 50.0%
AGCCGAGTATTTCCCACCAA+AGG + chr2.2:65179289-65179308 MS.gene96230:CDS 50.0%
AGTAGCTCACATGGACAGCA+CGG + chr2.2:65180568-65180587 MS.gene96230:CDS 50.0%
AGTTTCCCCTTATGCACAGG+CGG - chr2.2:65180187-65180206 None:intergenic 50.0%
ATAAAAAAGGGGGGTTGGGG+GGG - chr2.2:65180741-65180760 None:intergenic 50.0%
ATCGTCACGCTTACTACCAC+TGG + chr2.2:65178377-65178396 MS.gene96230:CDS 50.0%
ATGCTTGACCGAATCGCCTT+TGG - chr2.2:65179051-65179070 None:intergenic 50.0%
CAATCCATTCGCCAAGTGGA+TGG + chr2.2:65180542-65180561 MS.gene96230:CDS 50.0%
CAGAAGGTCTACCTCTTCCA+AGG + chr2.2:65179099-65179118 MS.gene96230:CDS 50.0%
CATTGGAGACTCCTTGGAAG+AGG - chr2.2:65179113-65179132 None:intergenic 50.0%
GAACGTAAGCACGATGTCGA+TGG - chr2.2:65177633-65177652 None:intergenic 50.0%
GAGCTACTTCTCCATCCACT+TGG - chr2.2:65180556-65180575 None:intergenic 50.0%
GGAAGTCATTGGAGACTCCT+TGG - chr2.2:65179119-65179138 None:intergenic 50.0%
GGATGGAGAAGTAGCTCACA+TGG + chr2.2:65180559-65180578 MS.gene96230:CDS 50.0%
GGCAAGGTTCACCAAGAAGA+GGG + chr2.2:65180516-65180535 MS.gene96230:CDS 50.0%
GTTCGAACTGTGAAAGGCTG+TGG - chr2.2:65179683-65179702 None:intergenic 50.0%
TACACACACGTGGGAGAGAA+TGG + chr2.2:65180688-65180707 MS.gene96230:intron 50.0%
TGCACAGTGCACTGCAAACA+AGG - chr2.2:65178231-65178250 None:intergenic 50.0%
TGGCAAGGTTCACCAAGAAG+AGG + chr2.2:65180515-65180534 MS.gene96230:CDS 50.0%
TTATAGCATGTGGCTGGCAC+AGG - chr2.2:65178590-65178609 None:intergenic 50.0%
TTCTCCATCCACTTGGCGAA+TGG - chr2.2:65180549-65180568 None:intergenic 50.0%
TTGTTTGCAGTGCACTGTGC+AGG + chr2.2:65178230-65178249 MS.gene96230:CDS 50.0%
TTTCGTCCAACCAGAACCTC+TGG - chr2.2:65177274-65177293 None:intergenic 50.0%
! ACGCTTACTACCACTGGCTA+TGG + chr2.2:65178383-65178402 MS.gene96230:CDS 50.0%
! CTTCTTCCAGAGGTTCTGGT+TGG + chr2.2:65177265-65177284 MS.gene96230:CDS 50.0%
! GACTGGTCCAGTGAACTACA+AGG - chr2.2:65178508-65178527 None:intergenic 50.0%
! GAGGTTCTGGTTGGACGAAA+TGG + chr2.2:65177274-65177293 MS.gene96230:CDS 50.0%
! GTGGTGAGTTGGCTAAAGCA+TGG + chr2.2:65179371-65179390 MS.gene96230:intron 50.0%
!! ACAGAGAACTGACTCGTCTC+AGG - chr2.2:65177940-65177959 None:intergenic 50.0%
!! AGGAGACTAATGGGCTCAAG+TGG - chr2.2:65177857-65177876 None:intergenic 50.0%
!! GCAACTGCAGTGGAAGCATT+TGG + chr2.2:65179632-65179651 MS.gene96230:CDS 50.0%
AGGTAGACCTTCTGCACGAC+AGG - chr2.2:65179093-65179112 None:intergenic 55.0%
GACACACGCATACACACACG+TGG + chr2.2:65180678-65180697 MS.gene96230:intron 55.0%
TAAAAAAGGGGGGTTGGGGG+GGG - chr2.2:65180740-65180759 None:intergenic 55.0%
TTTCAGGCGCAGTGGTGAGT+TGG + chr2.2:65179360-65179379 MS.gene96230:intron 55.0%
TTTGTTCGGGCGCCAAGAGA+TGG - chr2.2:65177347-65177366 None:intergenic 55.0%
!! TGTACTGGTTTCAGGCGCAG+TGG + chr2.2:65179352-65179371 MS.gene96230:CDS 55.0%
AAAAAAGGGGGGTTGGGGGG+GGG - chr2.2:65180739-65180758 None:intergenic 60.0%
CTGTGCCGCCTGTGCATAAG+GGG + chr2.2:65180179-65180198 MS.gene96230:CDS 60.0%
GCTGTGCCGCCTGTGCATAA+GGG + chr2.2:65180178-65180197 MS.gene96230:CDS 60.0%
TCTTGGCGCCCGAACAAACC+AGG + chr2.2:65177349-65177368 MS.gene96230:CDS 60.0%
TGCTGTGCCGCCTGTGCATA+AGG + chr2.2:65180177-65180196 MS.gene96230:CDS 60.0%
AAAAAGGGGGGTTGGGGGGG+GGG - chr2.2:65180738-65180757 None:intergenic 65.0%
AAAAGGGGGGTTGGGGGGGG+GGG - chr2.2:65180737-65180756 None:intergenic 70.0%
GCACAGGCGGCACAGCAGCA+TGG - chr2.2:65180174-65180193 None:intergenic 70.0%
AAAGGGGGGTTGGGGGGGGG+GGG - chr2.2:65180736-65180755 None:intergenic 75.0%
! AAGGGGGGTTGGGGGGGGGG+GGG - chr2.2:65180735-65180754 None:intergenic 80.0%
! AGGGGGGTTGGGGGGGGGGG+GGG - chr2.2:65180734-65180753 None:intergenic 85.0%
! GGGGGGTTGGGGGGGGGGGG+GGG - chr2.2:65180733-65180752 None:intergenic 90.0%
! GGGGGTTGGGGGGGGGGGGG+GGG - chr2.2:65180732-65180751 None:intergenic 90.0%
! GGGGTTGGGGGGGGGGGGGG+GGG - chr2.2:65180731-65180750 None:intergenic 90.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 65177242 65181025 65177242 ID=MS.gene96230
chr2.2 mRNA 65177242 65181025 65177242 ID=MS.gene96230.t1;Parent=MS.gene96230
chr2.2 exon 65177242 65177420 65177242 ID=MS.gene96230.t1.exon1;Parent=MS.gene96230.t1
chr2.2 CDS 65177242 65177420 65177242 ID=cds.MS.gene96230.t1;Parent=MS.gene96230.t1
chr2.2 exon 65177502 65177717 65177502 ID=MS.gene96230.t1.exon2;Parent=MS.gene96230.t1
chr2.2 CDS 65177502 65177717 65177502 ID=cds.MS.gene96230.t1;Parent=MS.gene96230.t1
chr2.2 exon 65177811 65177966 65177811 ID=MS.gene96230.t1.exon3;Parent=MS.gene96230.t1
chr2.2 CDS 65177811 65177966 65177811 ID=cds.MS.gene96230.t1;Parent=MS.gene96230.t1
chr2.2 exon 65178076 65178133 65178076 ID=MS.gene96230.t1.exon4;Parent=MS.gene96230.t1
chr2.2 CDS 65178076 65178133 65178076 ID=cds.MS.gene96230.t1;Parent=MS.gene96230.t1
chr2.2 exon 65178224 65178541 65178224 ID=MS.gene96230.t1.exon5;Parent=MS.gene96230.t1
chr2.2 CDS 65178224 65178541 65178224 ID=cds.MS.gene96230.t1;Parent=MS.gene96230.t1
chr2.2 exon 65178910 65179149 65178910 ID=MS.gene96230.t1.exon6;Parent=MS.gene96230.t1
chr2.2 CDS 65178910 65179149 65178910 ID=cds.MS.gene96230.t1;Parent=MS.gene96230.t1
chr2.2 exon 65179275 65179373 65179275 ID=MS.gene96230.t1.exon7;Parent=MS.gene96230.t1
chr2.2 CDS 65179275 65179373 65179275 ID=cds.MS.gene96230.t1;Parent=MS.gene96230.t1
chr2.2 exon 65179479 65179511 65179479 ID=MS.gene96230.t1.exon8;Parent=MS.gene96230.t1
chr2.2 CDS 65179479 65179511 65179479 ID=cds.MS.gene96230.t1;Parent=MS.gene96230.t1
chr2.2 exon 65179617 65179805 65179617 ID=MS.gene96230.t1.exon9;Parent=MS.gene96230.t1
chr2.2 CDS 65179617 65179805 65179617 ID=cds.MS.gene96230.t1;Parent=MS.gene96230.t1
chr2.2 exon 65179920 65180640 65179920 ID=MS.gene96230.t1.exon10;Parent=MS.gene96230.t1
chr2.2 CDS 65179920 65180640 65179920 ID=cds.MS.gene96230.t1;Parent=MS.gene96230.t1
chr2.2 exon 65180892 65181025 65180892 ID=MS.gene96230.t1.exon11;Parent=MS.gene96230.t1
chr2.2 CDS 65180892 65181025 65180892 ID=cds.MS.gene96230.t1;Parent=MS.gene96230.t1
Gene Sequence

>MS.gene96230

ATGTCATTTTCCAGTCTCAAAAACTTCTTCCAGAGGTTCTGGTTGGACGAAATGGAAATGGGAAGTTATACACATAGCAGCTTTTTGTCTAGTGATCTTCTACCATCTCTTGGCGCCCGAACAAACCAGGAAACCAGACTACGAAAATACATAATATCCCCATTCAATCCTCAGTATAGGTGATGACCTTTTACATAGTCACAATTCTTATGAATATTGTATCTGCATCTTCTCAAGTTTTCATGTATAATTTATTACAGGCTTTGGGAGTTGTTACTGATTGTTCTAGTCATATACTCAGCTTGGATATGCCCCTTTGAGTTTGCCTTTCTGACGTATAAGCAAAATGGACTATTCATAATAGACAACATTGTCAATGGCTTCTTTGCCATCGACATCGTGCTTACGTTCTTCGTTGCATACCACGATAGTCATTCTTCTCTTCTCATTGATGATCCAAAGAAAATTGCAACCAGGTGATATATATAGATATAAACTTTTCTTCCTTAGAAACTAAAATGAATGTCGAAAATCCCTACTTACTTTTCAAATTTCTACACAACATGTAGTTACATGTCCACCTGGTTTGTTTTGGATATCTGCTCAACAGCACCACTTGAGCCCATTAGTCTCCTCTTCACTACTTATGACAGTGAGCTTGGTTTCAAACTTCTTAACATGTTGCGATTATGGCGCCTGAGACGAGTCAGTTCTCTGTTTGCAAGGTTTGCCAGCATGTCAAATTTAATTTCATGGTTCAGGTTTAATCAATTCTTCTATTTACTAGAATATTCCAGTGCTTTCTTCCTTACTTGCACCTTTGCTATGTTTCAGACTCGAAAAGGACATTCGCTTCAATTACTTCTGGGTTAGGTGTACAAAGCTCACTGCTGTAAGCCATTAAACCTCATAAACTCCCCTACTTCCTATACAATTTCAAGGCACATCCAAGAACTGAATTTCCTCTTTCAAAAAATTTCAGGTAACCTTGTTTGCAGTGCACTGTGCAGGATGCTTTAACTATCTACTTGCAGATATGTACCCTGATTCTAAAAGAACTTGGATAGGTGCTATGTACCCAAATTTTAAAGAACAAAGTCTTTGGGACAGATACGTAACTTCAATATACTGGTCTATCGTCACGCTTACTACCACTGGCTATGGAGATTTACATGCAGAGAACACCATAGAGATGTTATTTGATATCACTTACATGCTGTTCAACTTGGGTTTAACAGCATACATCATTGGAAACATGACTAACCTTGTAGTTCACTGGACCAGTCGCACCCAAAATTTTGTAAGTACTTTCAATCTTAAGCTTCTTCTACTGCTGCTCAATTTTCCTGTGCCAGCCACATGCTATAATAATTTTATATTATACATGTGTTGGACTAAACTCTTATTATCATTCAGCAATGCCCTTCAAAGCTATTATCCAAACCAATGTTCAAAAAGTTAGTTACAAATACAGTGTAGGACTAGGCCCCACAATTGTCAAGTATATCTGAAATAGCACACCTAGTACAATCCTCTCGAGTTTCATGTTAAGTTAACCATAAGTTATTTTTGTCAGCTAATTGTGTCTTTTCTAAAACAAAAACTCGTTCAGATAAGAGGAAATTTATTTCTTCCCTCTTAATAAGAGAGGATTCATTTTGGTCACAGAGGGATACAGTCAAAGCAGCTTCTGAGTTTGCTTCAAGAAATCATCTGCCACGTCGCGTACACAATCAAATGTTGGCACACATTTGTTTGAGGTTTAAAACAGAAGGACTGAAGCAGCAAGAAGCATTAAATGATCTTCCAAAGGCGATTCGGTCAAGCATCGCACACCATCTCTTTTTTCCTGTCGTGCAGAAGGTCTACCTCTTCCAAGGAGTCTCCAATGACTTCCTTTTCCAACTGGTAATACCCCACATGTCTTTTTATTTTATTTTTTCACTTTTTGTCTCTTCTCCGGCTAAGTTAAAAGCAAGAAGATGAAGACCTAAAGTTTCAACATCTGACCCCAAGTAACTCTAATGATATAGGTTTCAGAAATGGAAGCCGAGTATTTCCCACCAAAGGAAGATGTGATACTGCAAAATGAGTCTCCTACAGACATTTATGTACTGGTTTCAGGCGCAGTGGTGAGTTGGCTAAAGCATGGATAGTCTAGTAACCATAAATGAATCTTAAAGAATGTCTACTAATATTTTTTTGTAAAATCTTTTCAAATGACTACTTTGTTGCAGAATCTCGTTCACTGCATTGATGGGAATGATCAAGTATGTCATAACTCATAATACTCAAACAGAACATGTTTTTTCTTTCGTCAAATTATGCAATGAAGCAACTGAATTTAACTTCCTATCCTTACATTAACAATTCAGGTGGTTTTTGACAAAGCAACTGCAGTGGAAGCATTTGGAGAGATTGGAGTTTTATATAATGTACCACAGCCTTTCACAGTTCGAACTACAGAGCTTTCTCAGATTTTAAGAATCAACAGAACATCCCTAATGAATGTTTTACAGGCAAATCCAGGAGATGCACAGATTGTGATGAATAACCTTTTAATGGTAATTAAGATATTCAAAGCTTCTAAACTCAACATGGGGAATATGTTGTATAAATTATATTTATCAATCATAGTAGGTTCCTAATCCTAATCATGTGTGATCTATATCTGACAGAGATTAAAGGAGCGTGAAGGATTCGACTCTGAATATCCACACACAGATCATGGATTGGTTCTATATAAATTGCTAGGTAACACAAAAGAAAGCTCTTCTCAAGAGTCTACAAATAATTTACATGGCCATTCCTTAATGCATGAAGGAGAGAACATAAATATCAGAGACTCACAGAATAATTTGCATATTGTGACTAATGATGTTTATTCAGACCCTAATAACATGATACCTGAGGATGGCAAAAGAGATCTCCATGCTGCTGTGCCGCCTGTGCATAAGGGGAAACTAGACATTGTTGAAATTCTGATTGAAAGAGATGCAAAAGCACAGAACCCAAATACCATAGGGTGGACACAAAAAGCTCTAGTACAACAGTTAAAAAACAAGAGCACTTCTGACCATACAATGTATTGTGAAAGCAAAAAATCAGATGAACATAGAATAGAGATTGTTGAGCCACAAATCCTTAACTTTGGCAAGAATGGCTCAACCCGAAACAGTAAACAGGACGGTATTAGAAATATCAACTTTCCAATAGAGAAAGTGTACACAGACACCAATTCAAGAAATTTTGATTGTCCAAGTGACATAGAAATGGCAAGGTTCACCAAGAAGAGGGTAACAATCCATTCGCCAAGTGGATGGAGAAGTAGCTCACATGGACAGCACGGAAAACTGATAATCCTACCTGATTCATTAGAAGAGCTGCTCAAAATTGCTGGTAAGCATTGAACCCTATAACTGAGGAACATTAGTTTGACACACGCATACACACACGTGGGAGAGAATGGAAAGAGCGATATCAGCTCCCCCCCCCCCCCCCCCAACCCCCCTTTTTTATTTTTATGATTTTTGCTGAGGGAAGGGAAGAGAGATACTGCCAAAATCAAATGCAATAATCTGAACACAGAACAGTAGAACTCTGTACTGCTATTACTTTCAACTTCTAACTATTAACTTGCAAAACTGCAGGTGAAAAATTTGGCGGCTTCAATGCCACAAAAATAATTAATAAAGAGAATGCAGAGATAGACGACATTGATGTCATTAGAGATGGTGATCACCTCTTTCTTATTGGCGGTGATATTGACAATTTGAACTCATGA
Protein sequence

>MS.gene96230.t1

MSFSSLKNFFQRFWLDEMEMGSYTHSSFLSSDLLPSLGARTNQETRLRKYIISPFNPQYRLWELLLIVLVIYSAWICPFEFAFLTYKQNGLFIIDNIVNGFFAIDIVLTFFVAYHDSHSSLLIDDPKKIATSYMSTWFVLDICSTAPLEPISLLFTTYDSELGFKLLNMLRLWRLRRVSSLFARLEKDIRFNYFWVRCTKLTAVTLFAVHCAGCFNYLLADMYPDSKRTWIGAMYPNFKEQSLWDRYVTSIYWSIVTLTTTGYGDLHAENTIEMLFDITYMLFNLGLTAYIIGNMTNLVVHWTSRTQNFRDTVKAASEFASRNHLPRRVHNQMLAHICLRFKTEGLKQQEALNDLPKAIRSSIAHHLFFPVVQKVYLFQGVSNDFLFQLVSEMEAEYFPPKEDVILQNESPTDIYVLVSGAVNLVHCIDGNDQVVFDKATAVEAFGEIGVLYNVPQPFTVRTTELSQILRINRTSLMNVLQANPGDAQIVMNNLLMRLKEREGFDSEYPHTDHGLVLYKLLGNTKESSSQESTNNLHGHSLMHEGENINIRDSQNNLHIVTNDVYSDPNNMIPEDGKRDLHAAVPPVHKGKLDIVEILIERDAKAQNPNTIGWTQKALVQQLKNKSTSDHTMYCESKKSDEHRIEIVEPQILNFGKNGSTRNSKQDGIRNINFPIEKVYTDTNSRNFDCPSDIEMARFTKKRVTIHSPSGWRSSSHGQHGKLIILPDSLEELLKIAGEKFGGFNATKIINKENAEIDDIDVIRDGDHLFLIGGDIDNLNS