Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023396.01.T01 | XP_003630135.2 | 71.277 | 94 | 21 | 1 | 4 | 97 | 58 | 145 | 9.68E-35 | 126 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023396.01.T01 | Q9LFA5 | 41.053 | 95 | 49 | 2 | 4 | 97 | 68 | 156 | 2.45E-14 | 67.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023396.01.T01 | G7LBD1 | 71.277 | 94 | 21 | 1 | 4 | 97 | 58 | 145 | 4.62e-35 | 126 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048383.01 | MsG0480023396.01 | 0.803725 | 3.039480e-49 | 1.538708e-46 |
| MsG0080048843.01 | MsG0480023396.01 | 0.801751 | 7.765419e-49 | 3.737838e-46 |
| MsG0080048968.01 | MsG0480023396.01 | 0.820471 | 6.741054e-53 | 5.338828e-50 |
| MsG0080049135.01 | MsG0480023396.01 | 0.805625 | 1.219437e-49 | 6.482617e-47 |
| MsG0180000055.01 | MsG0480023396.01 | 0.804950 | 1.688544e-49 | 8.822598e-47 |
| MsG0180000611.01 | MsG0480023396.01 | 0.846345 | 2.302150e-59 | 3.950518e-56 |
| MsG0180001043.01 | MsG0480023396.01 | 0.810999 | 8.715931e-51 | 5.333796e-48 |
| MsG0180001599.01 | MsG0480023396.01 | 0.814278 | 1.671281e-51 | 1.116579e-48 |
| MsG0180002283.01 | MsG0480023396.01 | 0.806517 | 7.915327e-50 | 4.304939e-47 |
| MsG0180003567.01 | MsG0480023396.01 | 0.804015 | 2.646166e-49 | 1.349647e-46 |
| MsG0180004016.01 | MsG0480023396.01 | 0.829007 | 6.547074e-55 | 6.615912e-52 |
| MsG0180004128.01 | MsG0480023396.01 | 0.833683 | 4.633471e-56 | 5.374957e-53 |
| MsG0180004130.01 | MsG0480023396.01 | 0.812767 | 3.592764e-51 | 2.304142e-48 |
| MsG0180004767.01 | MsG0480023396.01 | 0.810807 | 9.592934e-51 | 5.839744e-48 |
| MsG0180005268.01 | MsG0480023396.01 | 0.834856 | 2.352371e-56 | 2.826787e-53 |
| MsG0180005944.01 | MsG0480023396.01 | 0.801108 | 1.051997e-48 | 4.982545e-46 |
| MsG0180006046.01 | MsG0480023396.01 | 0.800377 | 1.482799e-48 | 6.893897e-46 |
| MsG0280006302.01 | MsG0480023396.01 | -0.805325 | 1.410025e-49 | 7.438046e-47 |
| MsG0280010776.01 | MsG0480023396.01 | 0.801790 | 7.626439e-49 | 3.674629e-46 |
| MsG0380011614.01 | MsG0480023396.01 | 0.825972 | 3.501439e-54 | 3.240619e-51 |
| MsG0380011704.01 | MsG0480023396.01 | 0.837900 | 3.955279e-57 | 5.211385e-54 |
| MsG0380013085.01 | MsG0480023396.01 | 0.814799 | 1.281366e-51 | 8.682169e-49 |
| MsG0380014885.01 | MsG0480023396.01 | 0.802688 | 4.981111e-49 | 2.455621e-46 |
| MsG0480019785.01 | MsG0480023396.01 | 0.806036 | 9.994834e-50 | 5.369745e-47 |
| MsG0480021041.01 | MsG0480023396.01 | 0.816085 | 6.630865e-52 | 4.653595e-49 |
| MsG0480021190.01 | MsG0480023396.01 | 0.805817 | 1.111486e-49 | 5.938085e-47 |
| MsG0480021832.01 | MsG0480023396.01 | 0.813297 | 2.748927e-51 | 1.788265e-48 |
| MsG0480022035.01 | MsG0480023396.01 | 0.815714 | 8.025361e-52 | 5.575318e-49 |
| MsG0480022292.01 | MsG0480023396.01 | 0.833618 | 4.807840e-56 | 5.566539e-53 |
| MsG0480022678.01 | MsG0480023396.01 | 0.809063 | 2.277396e-50 | 1.323797e-47 |
| MsG0480023032.01 | MsG0480023396.01 | 0.820402 | 6.992304e-53 | 5.527338e-50 |
| MsG0480023055.01 | MsG0480023396.01 | 0.816934 | 4.280317e-52 | 3.074625e-49 |
| MsG0480023143.01 | MsG0480023396.01 | 0.804881 | 1.745787e-49 | 9.105809e-47 |
| MsG0480023378.01 | MsG0480023396.01 | 0.817687 | 2.897206e-52 | 2.124383e-49 |
| MsG0480023387.01 | MsG0480023396.01 | 0.824963 | 6.069490e-54 | 5.458284e-51 |
| MsG0480023396.01 | MsG0580024084.01 | 0.802303 | 5.980869e-49 | 2.919854e-46 |
| MsG0480023396.01 | MsG0580024536.01 | 0.807157 | 5.797410e-50 | 3.205547e-47 |
| MsG0480023396.01 | MsG0580025400.01 | 0.814656 | 1.378896e-51 | 9.306706e-49 |
| MsG0480023396.01 | MsG0580025986.01 | 0.820995 | 5.108583e-53 | 4.105662e-50 |
| MsG0480023396.01 | MsG0580027034.01 | 0.801841 | 7.444009e-49 | 3.591494e-46 |
| MsG0480023396.01 | MsG0580028597.01 | 0.811430 | 7.030688e-51 | 4.351169e-48 |
| MsG0480023396.01 | MsG0580029283.01 | 0.833945 | 3.984767e-56 | 4.659836e-53 |
| MsG0480023396.01 | MsG0580029628.01 | 0.803324 | 3.681263e-49 | 1.844437e-46 |
| MsG0480023396.01 | MsG0580029629.01 | 0.804939 | 1.697783e-49 | 8.868333e-47 |
| MsG0480023396.01 | MsG0580029783.01 | 0.811504 | 6.774574e-51 | 4.200956e-48 |
| MsG0480023396.01 | MsG0580030003.01 | 0.818527 | 1.870697e-52 | 1.403800e-49 |
| MsG0480023396.01 | MsG0580030204.01 | 0.803683 | 3.100458e-49 | 1.567880e-46 |
| MsG0480023396.01 | MsG0680031000.01 | 0.808408 | 3.143396e-50 | 1.795940e-47 |
| MsG0480023396.01 | MsG0680031051.01 | 0.801661 | 8.104385e-49 | 3.892123e-46 |
| MsG0480023396.01 | MsG0680031699.01 | 0.815967 | 7.047002e-52 | 4.929526e-49 |
| MsG0480023396.01 | MsG0680032075.01 | 0.839770 | 1.298580e-57 | 1.811632e-54 |
| MsG0480023396.01 | MsG0680034476.01 | 0.823772 | 1.157014e-53 | 1.005794e-50 |
| MsG0480023396.01 | MsG0680035306.01 | 0.820837 | 5.553003e-53 | 4.442984e-50 |
| MsG0480023396.01 | MsG0680035854.01 | 0.827349 | 1.643433e-54 | 1.582685e-51 |
| MsG0480023396.01 | MsG0780036240.01 | 0.827228 | 1.756793e-54 | 1.685647e-51 |
| MsG0480023396.01 | MsG0780036696.01 | 0.803278 | 3.762182e-49 | 1.882801e-46 |
| MsG0480023396.01 | MsG0780039340.01 | 0.824232 | 9.022442e-54 | 7.944955e-51 |
| MsG0480023396.01 | MsG0780039943.01 | 0.824924 | 6.199654e-54 | 5.569284e-51 |
| MsG0480023396.01 | MsG0780040070.01 | 0.815260 | 1.012442e-51 | 6.946077e-49 |
| MsG0480023396.01 | MsG0780040125.01 | 0.829320 | 5.499188e-55 | 5.609842e-52 |
| MsG0480023396.01 | MsG0780040519.01 | 0.815082 | 1.109419e-51 | 7.574394e-49 |
| MsG0480023396.01 | MsG0780040856.01 | 0.813521 | 2.454111e-51 | 1.606308e-48 |
| MsG0480023396.01 | MsG0780041127.01 | 0.804492 | 2.104782e-49 | 1.086714e-46 |
| MsG0480023396.01 | MsG0780041210.01 | 0.810486 | 1.125581e-50 | 6.793408e-48 |
| MsG0480023396.01 | MsG0780041258.01 | 0.835736 | 1.410195e-56 | 1.740006e-53 |
| MsG0480023396.01 | MsG0780041390.01 | 0.800508 | 1.394435e-48 | 6.504325e-46 |
| MsG0480023396.01 | MsG0880042033.01 | 0.818446 | 1.952361e-52 | 1.461907e-49 |
| MsG0480023396.01 | MsG0880043163.01 | 0.805117 | 1.558618e-49 | 8.178240e-47 |
| MsG0480023396.01 | MsG0880043532.01 | 0.803076 | 4.141821e-49 | 2.062006e-46 |
| MsG0480023396.01 | MsG0880045656.01 | 0.826025 | 3.401247e-54 | 3.152513e-51 |
| MsG0480023396.01 | MsG0880045684.01 | 0.805705 | 1.173407e-49 | 6.251154e-47 |
| MsG0480023396.01 | MsG0880046091.01 | 0.824664 | 7.139635e-54 | 6.366253e-51 |
| MsG0480023396.01 | MsG0880047428.01 | 0.823323 | 1.473291e-53 | 1.264380e-50 |
| MsG0380015220.01 | MsG0480023396.01 | 0.809444 | 1.886576e-50 | 1.107832e-47 |
| MsG0380015607.01 | MsG0480023396.01 | 0.801681 | 8.028563e-49 | 3.857600e-46 |
| MsG0380015818.01 | MsG0480023396.01 | 0.823152 | 1.615200e-53 | 1.379604e-50 |
| MsG0380016905.01 | MsG0480023396.01 | 0.813627 | 2.326058e-51 | 1.526829e-48 |
| MsG0380017279.01 | MsG0480023396.01 | 0.801738 | 7.816426e-49 | 3.761050e-46 |
| MsG0380017476.01 | MsG0480023396.01 | 0.801078 | 1.067075e-48 | 5.050083e-46 |
| MsG0380017511.01 | MsG0480023396.01 | 0.804271 | 2.340795e-49 | 1.201713e-46 |
| MsG0480018235.01 | MsG0480023396.01 | 0.829078 | 6.294427e-55 | 6.374043e-52 |
| MsG0480018292.01 | MsG0480023396.01 | 0.824732 | 6.881881e-54 | 6.148104e-51 |
| MsG0280006852.01 | MsG0480023396.01 | 0.816129 | 6.482206e-52 | 4.554592e-49 |
| MsG0280006892.01 | MsG0480023396.01 | 0.812874 | 3.403960e-51 | 2.189168e-48 |
| MsG0280007440.01 | MsG0480023396.01 | 0.817665 | 2.931518e-52 | 2.148228e-49 |
| MsG0280007441.01 | MsG0480023396.01 | 0.830451 | 2.915564e-55 | 3.072660e-52 |
| MsG0280009141.01 | MsG0480023396.01 | 0.808435 | 3.101085e-50 | 1.773082e-47 |
| MsG0280009441.01 | MsG0480023396.01 | 0.807115 | 5.918578e-50 | 3.268838e-47 |
| MsG0280009554.01 | MsG0480023396.01 | 0.816333 | 5.836612e-52 | 4.124093e-49 |
| MsG0280009575.01 | MsG0480023396.01 | 0.841406 | 4.845823e-58 | 7.113619e-55 |
| MsG0280010205.01 | MsG0480023396.01 | 0.818927 | 1.517795e-52 | 1.151738e-49 |
| MsG0280010411.01 | MsG0480023396.01 | 0.823612 | 1.261226e-53 | 1.091325e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023396.01.T01 | MTR_8g092180 | 71.277 | 94 | 21 | 1 | 4 | 97 | 58 | 145 | 1.17e-38 | 126 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480023396.01.T01 | AT3G52860 | 41.053 | 95 | 49 | 2 | 4 | 97 | 68 | 156 | 2.49e-15 | 67.4 |
Find 18 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAATAAAGTTGAAGTTTCT+TGG | 0.235328 | 4:+84667301 | None:intergenic |
| AAAACAAGAACATTTGATTC+AGG | 0.280242 | 4:-84667086 | MsG0480023396.01.T01:CDS |
| AACACAATATTGAGTTGAAC+AGG | 0.311642 | 4:-84667030 | MsG0480023396.01.T01:CDS |
| CAAGCAGGAGATTGCTCTTA+TGG | 0.318355 | 4:-84667143 | MsG0480023396.01.T01:intron |
| ATTTGAAGTTACTCATTTGA+TGG | 0.388894 | 4:+84668903 | None:intergenic |
| TGATGGGAAGGGTGGGGAAA+CGG | 0.441112 | 4:+84668920 | None:intergenic |
| AAAAGAGCTGTCAGATCAGT+TGG | 0.445481 | 4:-84667056 | MsG0480023396.01.T01:CDS |
| CTCATTTGATGGGAAGGGTG+GGG | 0.499240 | 4:+84668914 | None:intergenic |
| AAAAGCTGAAATGCTTAGAA+AGG | 0.503198 | 4:-84667250 | MsG0480023396.01.T01:intron |
| TACTCATTTGATGGGAAGGG+TGG | 0.509595 | 4:+84668912 | None:intergenic |
| AAGTTACTCATTTGATGGGA+AGG | 0.511231 | 4:+84668908 | None:intergenic |
| TTTGAAGTTACTCATTTGAT+GGG | 0.525355 | 4:+84668904 | None:intergenic |
| ACTCATTTGATGGGAAGGGT+GGG | 0.531539 | 4:+84668913 | None:intergenic |
| AGTTACTCATTTGATGGGAA+GGG | 0.563207 | 4:+84668909 | None:intergenic |
| ATTTATTAGTCTGCAACGTG+AGG | 0.597216 | 4:-84667283 | MsG0480023396.01.T01:CDS |
| GCTCCATAAAATCTCTAGCA+TGG | 0.606048 | 4:+84667326 | None:intergenic |
| AAGAACATTTGATTCAGGAG+TGG | 0.607764 | 4:-84667081 | MsG0480023396.01.T01:CDS |
| ACACAATATTGAGTTGAACA+GGG | 0.651621 | 4:-84667029 | MsG0480023396.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATATATTTTTATATTAAT+TGG | - | Chr4:84667155-84667174 | MsG0480023396.01.T01:intron | 0.0% |
| !!! | AATAATTATTGATTAACATA+TGG | + | Chr4:84668112-84668131 | None:intergenic | 10.0% |
| !!! | TAAACAGATTTTAATATATT+TGG | - | Chr4:84668555-84668574 | MsG0480023396.01.T01:intron | 10.0% |
| !! | AAAAAGAATATATATGTACA+AGG | + | Chr4:84667688-84667707 | None:intergenic | 15.0% |
| !! | TTCTAAACTTTAACATAAAA+AGG | + | Chr4:84667926-84667945 | None:intergenic | 15.0% |
| !!! | AAGTCAAATGATAATTATTT+TGG | - | Chr4:84667327-84667346 | MsG0480023396.01.T01:CDS | 15.0% |
| !!! | ATTTTGGTTATTTAAGTTTA+AGG | - | Chr4:84667343-84667362 | MsG0480023396.01.T01:CDS | 15.0% |
| !! | ATTTGGAAAATATCTTAAGT+TGG | - | Chr4:84668572-84668591 | MsG0480023396.01.T01:intron | 20.0% |
| !! | TAAATAAAGTTGAAGTTTCT+TGG | + | Chr4:84668649-84668668 | None:intergenic | 20.0% |
| !! | TTATTAGCAAACATAGAAAA+TGG | - | Chr4:84668515-84668534 | MsG0480023396.01.T01:intron | 20.0% |
| !! | TTTGGAAAATATCTTAAGTT+GGG | - | Chr4:84668573-84668592 | MsG0480023396.01.T01:intron | 20.0% |
| !!! | AATCTTTCAAATCTTGATTT+TGG | - | Chr4:84667064-84667083 | MsG0480023396.01.T01:CDS | 20.0% |
| !!! | TTTTTTATTTCACACGTTTT+AGG | - | Chr4:84668235-84668254 | MsG0480023396.01.T01:intron | 20.0% |
| ! | AAAAAATGCTGTTCCTTAAT+GGG | - | Chr4:84667708-84667727 | MsG0480023396.01.T01:intron | 25.0% |
| ! | AAAACAAGAACATTTGATTC+AGG | - | Chr4:84668861-84668880 | MsG0480023396.01.T01:intron | 25.0% |
| ! | AGTTAGATAAGAACATTACA+AGG | + | Chr4:84668765-84668784 | None:intergenic | 25.0% |
| ! | TAAAAAATGCTGTTCCTTAA+TGG | - | Chr4:84667707-84667726 | MsG0480023396.01.T01:intron | 25.0% |
| ! | TGATAGATACTAGAAGTTAT+GGG | - | Chr4:84667570-84667589 | MsG0480023396.01.T01:intron | 25.0% |
| ! | TGTATCTAATTAATGACACA+CGG | + | Chr4:84667422-84667441 | None:intergenic | 25.0% |
| !! | ATTTGAAGTTACTCATTTGA+TGG | + | Chr4:84667047-84667066 | None:intergenic | 25.0% |
| !! | TTTGAAGTTACTCATTTGAT+GGG | + | Chr4:84667046-84667065 | None:intergenic | 25.0% |
| !!! | AAATTGCGTTTTGATTGAAA+TGG | - | Chr4:84667499-84667518 | MsG0480023396.01.T01:intron | 25.0% |
| AAAAGCTGAAATGCTTAGAA+AGG | - | Chr4:84668697-84668716 | MsG0480023396.01.T01:intron | 30.0% | |
| AAAGCACAAGTGTATGATAT+GGG | - | Chr4:84667747-84667766 | MsG0480023396.01.T01:intron | 30.0% | |
| AATTAGCTGTGAAGTCAAAT+AGG | - | Chr4:84668388-84668407 | MsG0480023396.01.T01:intron | 30.0% | |
| ATAAATGCAAGTACAACCTA+TGG | + | Chr4:84668269-84668288 | None:intergenic | 30.0% | |
| ATGCTAACATAACATATGTG+AGG | - | Chr4:84667379-84667398 | MsG0480023396.01.T01:intron | 30.0% | |
| CAATCAAAACGCAATTTACA+TGG | + | Chr4:84667496-84667515 | None:intergenic | 30.0% | |
| CAATCAACTCAATTATCACA+TGG | + | Chr4:84667879-84667898 | None:intergenic | 30.0% | |
| CCACACAATTATTACTGAAA+TGG | + | Chr4:84667527-84667546 | None:intergenic | 30.0% | |
| CCATTTCAGTAATAATTGTG+TGG | - | Chr4:84667524-84667543 | MsG0480023396.01.T01:intron | 30.0% | |
| CTGATAGATACTAGAAGTTA+TGG | - | Chr4:84667569-84667588 | MsG0480023396.01.T01:intron | 30.0% | |
| ! | AAGTGCTGCAAAACTTTATA+AGG | + | Chr4:84668439-84668458 | None:intergenic | 30.0% |
| !! | AACACAATATTGAGTTGAAC+AGG | - | Chr4:84668917-84668936 | MsG0480023396.01.T01:CDS | 30.0% |
| !! | ACACAATATTGAGTTGAACA+GGG | - | Chr4:84668918-84668937 | MsG0480023396.01.T01:CDS | 30.0% |
| !! | CATGTGATAATTGAGTTGAT+TGG | - | Chr4:84667877-84667896 | MsG0480023396.01.T01:intron | 30.0% |
| AACCACAGAAATGAGTGAAA+TGG | - | Chr4:84668147-84668166 | MsG0480023396.01.T01:intron | 35.0% | |
| AAGAACATTTGATTCAGGAG+TGG | - | Chr4:84668866-84668885 | MsG0480023396.01.T01:intron | 35.0% | |
| AAGTTACTCATTTGATGGGA+AGG | + | Chr4:84667042-84667061 | None:intergenic | 35.0% | |
| ACCACAGAAATGAGTGAAAT+GGG | - | Chr4:84668148-84668167 | MsG0480023396.01.T01:intron | 35.0% | |
| ACTACAAGCTGTGACTAAAT+AGG | - | Chr4:84667290-84667309 | MsG0480023396.01.T01:CDS | 35.0% | |
| AGACATAACTAGAGCAGAAT+AGG | + | Chr4:84668491-84668510 | None:intergenic | 35.0% | |
| AGTTACTCATTTGATGGGAA+GGG | + | Chr4:84667041-84667060 | None:intergenic | 35.0% | |
| ATTTAGTCACAGCTTGTAGT+AGG | + | Chr4:84667290-84667309 | None:intergenic | 35.0% | |
| GACATAACTAGAGCAGAATA+GGG | + | Chr4:84668490-84668509 | None:intergenic | 35.0% | |
| TCAACAACTGAATTCCACAA+GGG | + | Chr4:84667971-84667990 | None:intergenic | 35.0% | |
| ! | ATTTAGACCTTTCTAGCCTT+AGG | - | Chr4:84668287-84668306 | MsG0480023396.01.T01:intron | 35.0% |
| ! | ATTTATTAGTCTGCAACGTG+AGG | - | Chr4:84668664-84668683 | MsG0480023396.01.T01:intron | 35.0% |
| ! | CTAAGCATTTCAGCTTTTGT+TGG | + | Chr4:84668695-84668714 | None:intergenic | 35.0% |
| ! | GAAAGCACAAGTGTATGATA+TGG | - | Chr4:84667746-84667765 | MsG0480023396.01.T01:intron | 35.0% |
| ! | GAGACATTTTGTGTGATCAA+TGG | - | Chr4:84667839-84667858 | MsG0480023396.01.T01:intron | 35.0% |
| !! | ATTGAGTTGAACAGGGTTTA+GGG | - | Chr4:84668925-84668944 | MsG0480023396.01.T01:CDS | 35.0% |
| !! | TATTGAGTTGAACAGGGTTT+AGG | - | Chr4:84668924-84668943 | MsG0480023396.01.T01:CDS | 35.0% |
| !! | TTTAGACCTTTCTAGCCTTA+GGG | - | Chr4:84668288-84668307 | MsG0480023396.01.T01:intron | 35.0% |
| AAAAGAGCTGTCAGATCAGT+TGG | - | Chr4:84668891-84668910 | MsG0480023396.01.T01:intron | 40.0% | |
| AACAACTGAATTCCACAAGG+GGG | + | Chr4:84667969-84667988 | None:intergenic | 40.0% | |
| AAGTTCCATACAGCCCATTA+AGG | + | Chr4:84667724-84667743 | None:intergenic | 40.0% | |
| ATTTGACCCTAAGGCTAGAA+AGG | + | Chr4:84668297-84668316 | None:intergenic | 40.0% | |
| CAAAATTGCAGTCAAACCAC+GGG | + | Chr4:84668324-84668343 | None:intergenic | 40.0% | |
| CAACAACTGAATTCCACAAG+GGG | + | Chr4:84667970-84667989 | None:intergenic | 40.0% | |
| CCAAAATTGCAGTCAAACCA+CGG | + | Chr4:84668325-84668344 | None:intergenic | 40.0% | |
| GAGAAAAGAAGGGTGGTAAA+AGG | - | Chr4:84668036-84668055 | MsG0480023396.01.T01:intron | 40.0% | |
| GCTCCATAAAATCTCTAGCA+TGG | + | Chr4:84668624-84668643 | None:intergenic | 40.0% | |
| GTCAACAACTGAATTCCACA+AGG | + | Chr4:84667972-84667991 | None:intergenic | 40.0% | |
| TCCCATTTCACTCATTTCTG+TGG | + | Chr4:84668152-84668171 | None:intergenic | 40.0% | |
| ! | GGTTTTTCTATCAGTCGATG+TGG | - | Chr4:84668594-84668613 | MsG0480023396.01.T01:intron | 40.0% |
| ! | TAAAGTTTTGCAGCACTTGC+AGG | - | Chr4:84668441-84668460 | MsG0480023396.01.T01:intron | 40.0% |
| ! | TCGCCATGCTAGAGATTTTA+TGG | - | Chr4:84668618-84668637 | MsG0480023396.01.T01:intron | 40.0% |
| !! | TTGAGTTGAACAGGGTTTAG+GGG | - | Chr4:84668926-84668945 | MsG0480023396.01.T01:CDS | 40.0% |
| ACAACTGAATTCCACAAGGG+GGG | + | Chr4:84667968-84667987 | None:intergenic | 45.0% | |
| ACGGGTTCTATTTGACCCTA+AGG | + | Chr4:84668306-84668325 | None:intergenic | 45.0% | |
| ACTCATTTGATGGGAAGGGT+GGG | + | Chr4:84667037-84667056 | None:intergenic | 45.0% | |
| AGCAGAATAGGGACATAAGC+GGG | + | Chr4:84668479-84668498 | None:intergenic | 45.0% | |
| ATGAGTGCACCAATCATCCA+TGG | - | Chr4:84668012-84668031 | MsG0480023396.01.T01:intron | 45.0% | |
| CAAGCAGGAGATTGCTCTTA+TGG | - | Chr4:84668804-84668823 | MsG0480023396.01.T01:intron | 45.0% | |
| CATAAGAGCAATCTCCTGCT+TGG | + | Chr4:84668806-84668825 | None:intergenic | 45.0% | |
| CATCCATGGGGAGAAAAGAA+GGG | - | Chr4:84668026-84668045 | MsG0480023396.01.T01:intron | 45.0% | |
| CTGTTATGTGTTGTCCAAGC+AGG | - | Chr4:84668789-84668808 | MsG0480023396.01.T01:intron | 45.0% | |
| GAGCAGAATAGGGACATAAG+CGG | + | Chr4:84668480-84668499 | None:intergenic | 45.0% | |
| TACTCATTTGATGGGAAGGG+TGG | + | Chr4:84667038-84667057 | None:intergenic | 45.0% | |
| TATGATTCCTCACACGCTGA+GGG | + | Chr4:84667781-84667800 | None:intergenic | 45.0% | |
| TCATCCATGGGGAGAAAAGA+AGG | - | Chr4:84668025-84668044 | MsG0480023396.01.T01:intron | 45.0% | |
| TGAGTGCACCAATCATCCAT+GGG | - | Chr4:84668013-84668032 | MsG0480023396.01.T01:intron | 45.0% | |
| TTAGGGTCAAATAGAACCCG+TGG | - | Chr4:84668305-84668324 | MsG0480023396.01.T01:intron | 45.0% | |
| TTATGATTCCTCACACGCTG+AGG | + | Chr4:84667782-84667801 | None:intergenic | 45.0% | |
| ! | CCGTGGTTTGACTGCAATTT+TGG | - | Chr4:84668322-84668341 | MsG0480023396.01.T01:intron | 45.0% |
| ! | CTTTTCTCCCCATGGATGAT+TGG | + | Chr4:84668024-84668043 | None:intergenic | 45.0% |
| !! | CTGTTCCTTAATGGGCTGTA+TGG | - | Chr4:84667716-84667735 | MsG0480023396.01.T01:intron | 45.0% |
| !! | TTCACACGTTTTAGGTCCGA+GGG | - | Chr4:84668243-84668262 | MsG0480023396.01.T01:intron | 45.0% |
| !! | TTTCACACGTTTTAGGTCCG+AGG | - | Chr4:84668242-84668261 | MsG0480023396.01.T01:intron | 45.0% |
| CAAGTACAACCTATGGCCCT+CGG | + | Chr4:84668262-84668281 | None:intergenic | 50.0% | |
| CTCATTTGATGGGAAGGGTG+GGG | + | Chr4:84667036-84667055 | None:intergenic | 50.0% | |
| GAGTGCACCAATCATCCATG+GGG | - | Chr4:84668014-84668033 | MsG0480023396.01.T01:intron | 50.0% | |
| ACAACATTGTGCCCCCCTTG+TGG | - | Chr4:84667954-84667973 | MsG0480023396.01.T01:intron | 55.0% | |
| CCATGGGGAGAAAAGAAGGG+TGG | - | Chr4:84668029-84668048 | MsG0480023396.01.T01:intron | 55.0% | |
| TGATGGGAAGGGTGGGGAAA+CGG | + | Chr4:84667030-84667049 | None:intergenic | 55.0% | |
| ! | CCACCCTTCTTTTCTCCCCA+TGG | + | Chr4:84668032-84668051 | None:intergenic | 55.0% |
| ! | GGGGGCACAATGTTGTTGCA+AGG | + | Chr4:84667950-84667969 | None:intergenic | 55.0% |
| !! | GTTTTAGGTCCGAGGGCCAT+AGG | - | Chr4:84668250-84668269 | MsG0480023396.01.T01:intron | 55.0% |
| GACGATACCCTCAGCGTGTG+AGG | - | Chr4:84667771-84667790 | MsG0480023396.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 84667024 | 84668945 | 84667024 | ID=MsG0480023396.01;Name=MsG0480023396.01 |
| Chr4 | mRNA | 84667024 | 84668945 | 84667024 | ID=MsG0480023396.01.T01;Parent=MsG0480023396.01;Name=MsG0480023396.01.T01;_AED=0.50;_eAED=0.65;_QI=0|0|0|1|0.5|0.33|3|0|97 |
| Chr4 | exon | 84668915 | 84668945 | 84668915 | ID=MsG0480023396.01.T01:exon:6163;Parent=MsG0480023396.01.T01 |
| Chr4 | exon | 84667251 | 84667378 | 84667251 | ID=MsG0480023396.01.T01:exon:6162;Parent=MsG0480023396.01.T01 |
| Chr4 | exon | 84667024 | 84667158 | 84667024 | ID=MsG0480023396.01.T01:exon:6161;Parent=MsG0480023396.01.T01 |
| Chr4 | CDS | 84668915 | 84668945 | 84668915 | ID=MsG0480023396.01.T01:cds;Parent=MsG0480023396.01.T01 |
| Chr4 | CDS | 84667251 | 84667378 | 84667251 | ID=MsG0480023396.01.T01:cds;Parent=MsG0480023396.01.T01 |
| Chr4 | CDS | 84667024 | 84667158 | 84667024 | ID=MsG0480023396.01.T01:cds;Parent=MsG0480023396.01.T01 |
| Gene Sequence |
| Protein sequence |
