AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040047.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040047.01.T01 MTR_7g083660 99.029 103 1 0 1 103 1 103 2.83e-66 209
MsG0780040047.01.T01 MTR_5g026350 68.932 103 32 0 1 103 1 103 1.95e-44 152
MsG0780040047.01.T01 MTR_8g071920 63.366 101 37 0 1 101 42 142 1.25e-41 144
MsG0780040047.01.T01 MTR_3g466040 54.348 92 42 0 7 98 7 98 1.23e-30 114
MsG0780040047.01.T01 MTR_3g466110 51.020 98 48 0 1 98 1 98 1.15e-29 111
MsG0780040047.01.T01 MTR_4g073690 48.039 102 52 1 2 102 10 111 1.16e-27 104
MsG0780040047.01.T01 MTR_4g073690 48.515 101 51 1 2 101 10 110 3.24e-27 104
MsG0780040047.01.T01 MTR_5g022380 47.000 100 52 1 5 103 11 110 1.91e-25 99.8
MsG0780040047.01.T01 MTR_2g450710 41.176 102 59 1 3 103 8 109 1.09e-18 80.5
MsG0780040047.01.T01 MTR_4g116210 37.500 104 62 1 3 103 7 110 4.20e-15 70.5
MsG0780040047.01.T01 MTR_7g029015 36.842 95 59 1 7 100 15 109 1.99e-14 68.6
MsG0780040047.01.T01 MTR_3g099150 33.929 112 68 2 6 111 14 125 7.34e-14 66.6
MsG0780040047.01.T01 MTR_1g059080 36.170 94 60 0 7 100 24 117 4.51e-11 58.9
MsG0780040047.01.T01 MTR_1g111510 36.170 94 60 0 7 100 26 119 5.70e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040047.01.T01 AT4G19450 69.307 101 31 0 1 101 1 101 2.15e-46 154
MsG0780040047.01.T01 AT4G19450 69.307 101 31 0 1 101 1 101 1.41e-45 155
MsG0780040047.01.T01 AT5G45275 66.990 103 34 0 1 103 1 103 2.53e-44 151
MsG0780040047.01.T01 AT1G31470 66.019 103 35 0 1 103 37 139 7.53e-40 139
MsG0780040047.01.T01 AT3G01630 60.204 98 39 0 6 103 22 119 8.01e-35 125
MsG0780040047.01.T01 AT3G01630 60.204 98 39 0 6 103 40 137 9.00e-35 125
MsG0780040047.01.T01 AT4G34950 46.875 96 50 1 7 101 16 111 8.45e-25 97.8
MsG0780040047.01.T01 AT2G16660 45.833 96 51 1 7 101 14 109 1.38e-18 80.5
MsG0780040047.01.T01 AT2G16660 45.833 96 51 1 7 101 14 109 1.54e-18 79.7
MsG0780040047.01.T01 AT2G30300 47.917 96 47 1 5 97 2 97 1.01e-17 77.8
MsG0780040047.01.T01 AT5G14120 37.113 97 60 1 5 100 14 110 3.26e-15 70.9
MsG0780040047.01.T01 AT3G01930 37.113 97 60 1 5 100 14 110 4.45e-15 70.5
MsG0780040047.01.T01 AT3G01930 37.113 97 60 1 5 100 14 110 5.23e-15 70.1
MsG0780040047.01.T01 AT1G80530 36.275 102 64 1 3 103 9 110 9.40e-13 63.5
MsG0780040047.01.T01 AT5G50520 35.714 98 61 2 5 100 14 111 1.46e-11 60.1
MsG0780040047.01.T01 AT5G50630 35.714 98 61 2 5 100 14 111 1.46e-11 60.1

Find 38 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGATCATGTCTGCTTTCT+TGG 0.152653 7:+72425568 MsG0780040047.01.T01:CDS
TCTGCTTTCTTGGGGCTTCT+TGG 0.215288 7:+72425578 MsG0780040047.01.T01:CDS
AAAGCATTTGGTTGGTGTTC+TGG 0.217744 7:+72425512 MsG0780040047.01.T01:CDS
TTCTTGGGGCTTCTTGGTTA+TGG 0.251188 7:+72425584 MsG0780040047.01.T01:CDS
GCATGACAATCAATATCTTT+TGG 0.256549 7:+72423036 MsG0780040047.01.T01:five_prime_UTR
CATTACTTTGCCTTATTATC+TGG 0.258977 7:+72425634 MsG0780040047.01.T01:CDS
TTGATCATGTCTGCTTTCTT+GGG 0.259108 7:+72425569 MsG0780040047.01.T01:CDS
TCTTTCAGTTGCATCAGATA+TGG 0.286301 7:+72425487 MsG0780040047.01.T01:CDS
CTTCCAACCACCAAGAAAAT+AGG 0.307063 7:-72425284 None:intergenic
TTCAGAAGGAACCCTCAAAA+TGG 0.310065 7:+72422965 MsG0780040047.01.T01:five_prime_UTR
TTCTGAACCATGGTGTTTGA+TGG 0.341845 7:-72422949 None:intergenic
CTTTCAGTTGCATCAGATAT+GGG 0.368180 7:+72425488 MsG0780040047.01.T01:CDS
TGAAAACTGACCAGATAATA+AGG 0.370421 7:-72425644 None:intergenic
TGGTGCTAATAGCAACAATT+TGG 0.381055 7:+72425372 MsG0780040047.01.T01:CDS
TCAGATATGGGGAAAGCATT+TGG 0.385904 7:+72425500 MsG0780040047.01.T01:CDS
TGGTGGTTGGAAGAAGGAAT+TGG 0.397433 7:+72425294 MsG0780040047.01.T01:five_prime_UTR
CTCTTTAGGTACAATTATCA+TGG 0.421594 7:+72425112 MsG0780040047.01.T01:intron
TCAGAAGGAACCCTCAAAAT+GGG 0.424901 7:+72422966 MsG0780040047.01.T01:five_prime_UTR
TGATCATGTCTGCTTTCTTG+GGG 0.484019 7:+72425570 MsG0780040047.01.T01:CDS
TTGCAGGGTGTAGCATCTGC+TGG 0.486473 7:+72427233 MsG0780040047.01.T01:intron
GATCTCTCAAGGCTCAAGCT+TGG 0.512290 7:+72423063 MsG0780040047.01.T01:five_prime_UTR
ATTTGGATACAAGCATTCAC+AGG 0.516938 7:+72425389 MsG0780040047.01.T01:CDS
TCAATCAACTTTGTTGGTGA+AGG 0.535209 7:+72422925 None:intergenic
GTTCAAGGTGAATTTGGTGA+TGG 0.537582 7:-72425233 None:intergenic
TGGTTGGAGAATCAAGAAAG+TGG 0.541955 7:+72425348 MsG0780040047.01.T01:CDS
TGAGGGTTCCTTCTGAACCA+TGG 0.550066 7:-72422959 None:intergenic
ATCAAACACCATGGTTCAGA+AGG 0.563426 7:+72422951 MsG0780040047.01.T01:five_prime_UTR
ATATGGGGAAAGCATTTGGT+TGG 0.569888 7:+72425504 MsG0780040047.01.T01:CDS
TATGCATAATACATAGCAGA+CGG 0.594003 7:-72427263 None:intergenic
TTTCAGTTGCATCAGATATG+GGG 0.597227 7:+72425489 MsG0780040047.01.T01:CDS
CAGAAGGAACCCTCAAAATG+GGG 0.600187 7:+72422967 MsG0780040047.01.T01:five_prime_UTR
GGTTGGAGAATCAAGAAAGT+GGG 0.601920 7:+72425349 MsG0780040047.01.T01:CDS
ATGATCAAAACCACCCACAA+AGG 0.629769 7:-72425554 None:intergenic
TTTGGATACAAGCATTCACA+GGG 0.664994 7:+72425390 MsG0780040047.01.T01:CDS
AGTTTAACATGTCTGAACCA+TGG 0.676378 7:-72422995 None:intergenic
AGAAGGAACCCTCAAAATGG+GGG 0.681843 7:+72422968 MsG0780040047.01.T01:five_prime_UTR
TGAAGGACCATCAAACACCA+TGG 0.713257 7:+72422942 MsG0780040047.01.T01:five_prime_UTR
TGGAGAATCAAGAAAGTGGG+TGG 0.726199 7:+72425352 MsG0780040047.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+GGG - Chr7:72423644-72423625 None:intergenic 0.0%
!! TATATATATATATATAAATA+AGG + Chr7:72423634-72423653 MsG0780040047.01.T01:intron 0.0%
!! TATATATATATATATATATA+TGG - Chr7:72423645-72423626 None:intergenic 0.0%
!! AATAAAAAAAATAGGAAATT+GGG - Chr7:72424782-72424801 None:intergenic 10.0%
!!! GTTTAAAAAATATTACTTTT+TGG + Chr7:72426827-72426846 MsG0780040047.01.T01:intron 10.0%
!!! TAATTATTGTCTTTTTAAAT+TGG - Chr7:72426518-72426537 None:intergenic 10.0%
!! AACTTAATTAAGTTAAAGTT+AGG - Chr7:72424574-72424593 None:intergenic 15.0%
!! CAATAAAAAAAATAGGAAAT+TGG - Chr7:72424783-72424802 None:intergenic 15.0%
!! TACTTATATATTACTTAAAG+AGG - Chr7:72426340-72426359 None:intergenic 15.0%
!! TCGAATTTATGTAATAATTA+AGG - Chr7:72423488-72423507 None:intergenic 15.0%
!!! AAAGAAATTTTAGAGTTAAA+AGG - Chr7:72424245-72424264 None:intergenic 15.0%
!!! AAATTAAATACGAATTTTGT+TGG + Chr7:72426310-72426329 MsG0780040047.01.T01:intron 15.0%
!!! AAGAAATTTTAGAGTTAAAA+GGG - Chr7:72424244-72424263 None:intergenic 15.0%
!!! AATTAAATACGAATTTTGTT+GGG + Chr7:72426311-72426330 MsG0780040047.01.T01:intron 15.0%
!!! ACTATGTTTATATGTTTTAA+TGG - Chr7:72423586-72423605 None:intergenic 15.0%
!!! ATAATTGATTTTGACATATT+TGG + Chr7:72424439-72424458 MsG0780040047.01.T01:intron 15.0%
!!! ATTTTTCTATTTTTGACTAT+TGG - Chr7:72425168-72425187 None:intergenic 15.0%
!!! CAATTTCCTATTTTTTTTAT+TGG + Chr7:72424781-72424800 MsG0780040047.01.T01:intron 15.0%
!!! GTGTAATTTTTTATTTCAAT+TGG + Chr7:72423160-72423179 MsG0780040047.01.T01:intron 15.0%
!!! TATTTAATTTTCAAAGGTTA+AGG + Chr7:72426180-72426199 MsG0780040047.01.T01:intron 15.0%
!!! TTTTACTAAACAACTTAATT+AGG + Chr7:72424525-72424544 MsG0780040047.01.T01:intron 15.0%
!! AAAAAAAGGAAAATGTTAAC+CGG + Chr7:72426731-72426750 MsG0780040047.01.T01:intron 20.0%
!! ATAAAGTGTAAGTATATGTT+TGG + Chr7:72424377-72424396 MsG0780040047.01.T01:intron 20.0%
!! CAATTTAACTCATATTAGAA+AGG - Chr7:72427074-72427093 None:intergenic 20.0%
!! TCTCATTTATTTACCTTAAT+CGG - Chr7:72426973-72426992 None:intergenic 20.0%
!! TGTATTTAGTGTTTCAAAAA+TGG - Chr7:72424304-72424323 None:intergenic 20.0%
!! TTCAAAAAATGGATAACTTA+TGG - Chr7:72423974-72423993 None:intergenic 20.0%
!!! ATTAAATACGAATTTTGTTG+GGG + Chr7:72426312-72426331 MsG0780040047.01.T01:intron 20.0%
!!! CTAATACCATCTTAAAATTT+TGG + Chr7:72425936-72425955 MsG0780040047.01.T01:intron 20.0%
!!! GTTTGAAATGAGTTTATAAA+GGG - Chr7:72426012-72426031 None:intergenic 20.0%
!!! TACATGTTCATAAATCTTTT+AGG + Chr7:72427134-72427153 MsG0780040047.01.T01:intron 20.0%
!!! TTTTCCTTTTTTTTTTAGAG+AGG - Chr7:72426724-72426743 None:intergenic 20.0%
! AACATAGTAGAAATGTAAAG+AGG - Chr7:72425710-72425729 None:intergenic 25.0%
! AAGAAATCAAATCTTTCTTC+TGG - Chr7:72426627-72426646 None:intergenic 25.0%
! ACATAGTAGAAATGTAAAGA+GGG - Chr7:72425709-72425728 None:intergenic 25.0%
! ACATTACAATAGGTAAAGAT+TGG - Chr7:72427013-72427032 None:intergenic 25.0%
! AGGAAAAAAAAAAGATGCTT+AGG + Chr7:72423394-72423413 MsG0780040047.01.T01:intron 25.0%
! ATATTCTTGTATTATACTGC+AGG + Chr7:72427193-72427212 MsG0780040047.01.T01:intron 25.0%
! ATTACAATAGGTAAAGATTG+GGG - Chr7:72427011-72427030 None:intergenic 25.0%
! CATTACAATAGGTAAAGATT+GGG - Chr7:72427012-72427031 None:intergenic 25.0%
! GAAAGCTACATCATTTAAAT+GGG - Chr7:72424929-72424948 None:intergenic 25.0%
! GACTCTCCAATAAAAAAAAT+AGG - Chr7:72424790-72424809 None:intergenic 25.0%
! GGCATATTATGTGTATTATT+TGG - Chr7:72426258-72426277 None:intergenic 25.0%
! TAGAGTCTATTCATATTCAT+TGG - Chr7:72425919-72425938 None:intergenic 25.0%
! TGAAAGCTACATCATTTAAA+TGG - Chr7:72424930-72424949 None:intergenic 25.0%
! TGGAAAAAAAAAAAAGCGAA+GGG - Chr7:72423844-72423863 None:intergenic 25.0%
! TTAAAAGGGAATACATGATA+TGG - Chr7:72424230-72424249 None:intergenic 25.0%
! TTACAATGCATAAACATTAG+TGG + Chr7:72425003-72425022 MsG0780040047.01.T01:intron 25.0%
! TTCTTGACATATACCTAATT+AGG + Chr7:72426070-72426089 MsG0780040047.01.T01:intron 25.0%
! TTGGAAAAAAAAAAAAGCGA+AGG - Chr7:72423845-72423864 None:intergenic 25.0%
!! AATTGATTCTACTTAAAGCT+AGG + Chr7:72424494-72424513 MsG0780040047.01.T01:intron 25.0%
!! ACAATCAATATCTTTTGGAT+TGG + Chr7:72423041-72423060 MsG0780040047.01.T01:five_prime_UTR 25.0%
!! AGATTATGATACGTTAGTTT+AGG - Chr7:72426667-72426686 None:intergenic 25.0%
!! CAACTTAATTAGGATTTGTT+TGG + Chr7:72424535-72424554 MsG0780040047.01.T01:intron 25.0%
!! CATACTTATATTGATGGTAT+GGG - Chr7:72423450-72423469 None:intergenic 25.0%
!! CTAATTTTAAATTAGGCAAG+AGG - Chr7:72426900-72426919 None:intergenic 25.0%
!! GGTTTGAAATGAGTTTATAA+AGG - Chr7:72426013-72426032 None:intergenic 25.0%
!! TAATACATCTCCTATTTTCT+TGG + Chr7:72425274-72425293 MsG0780040047.01.T01:five_prime_UTR 25.0%
!! TCTACATTCTTAAAGTATCA+GGG + Chr7:72423723-72423742 MsG0780040047.01.T01:intron 25.0%
!! TGCAAGTTTTACAAAGTTAA+GGG + Chr7:72424815-72424834 MsG0780040047.01.T01:intron 25.0%
!! TTCATGTTTTGTAGCTATTT+TGG + Chr7:72423091-72423110 MsG0780040047.01.T01:five_prime_UTR 25.0%
!! TTCTACATTCTTAAAGTATC+AGG + Chr7:72423722-72423741 MsG0780040047.01.T01:intron 25.0%
!! TTGCAAGTTTTACAAAGTTA+AGG + Chr7:72424814-72424833 MsG0780040047.01.T01:intron 25.0%
!! TTGGAACGTTTTGTAAAATT+AGG + Chr7:72424753-72424772 MsG0780040047.01.T01:intron 25.0%
!! TTTGAAACATAAGTACACTA+GGG + Chr7:72426157-72426176 MsG0780040047.01.T01:intron 25.0%
!! TTTTAAATTGGTCAATGTCA+TGG - Chr7:72426506-72426525 None:intergenic 25.0%
!!! ATTTTTTAGAATCCGTTTGA+TGG - Chr7:72426294-72426313 None:intergenic 25.0%
!!! CAAAATACTCTGTTTCTAAA+TGG - Chr7:72426141-72426160 None:intergenic 25.0%
!!! CTAGGGTATTTAATTTTCAA+AGG + Chr7:72426174-72426193 MsG0780040047.01.T01:intron 25.0%
!!! GATCAACCAAAATTTTAAGA+TGG - Chr7:72425945-72425964 None:intergenic 25.0%
!!! TATGTTGTTATTGCAAGTTT+TGG + Chr7:72425724-72425743 MsG0780040047.01.T01:intron 25.0%
!!! TGATTCTATAGAATCGATTT+TGG - Chr7:72424688-72424707 None:intergenic 25.0%
!!! TTCTATTTTTGACTATTGGT+TGG - Chr7:72425164-72425183 None:intergenic 25.0%
!!! TTTTGAAACATAAGTACACT+AGG + Chr7:72426156-72426175 MsG0780040047.01.T01:intron 25.0%
AAATGGATGATGATCAAATG+TGG + Chr7:72425862-72425881 MsG0780040047.01.T01:intron 30.0%
AAGAATGTAGAAGAATCTGT+GGG - Chr7:72423714-72423733 None:intergenic 30.0%
AATAGTGACACAAATGTTCT+TGG - Chr7:72423341-72423360 None:intergenic 30.0%
AATCACACCACTTAACTAAT+TGG + Chr7:72426095-72426114 MsG0780040047.01.T01:intron 30.0%
AATGGATGATGATCAAATGT+GGG + Chr7:72425863-72425882 MsG0780040047.01.T01:intron 30.0%
AGCTAGCATACTTATATTGA+TGG - Chr7:72423456-72423475 None:intergenic 30.0%
AGCTTTACCAATTAGTTAAG+TGG - Chr7:72426105-72426124 None:intergenic 30.0%
ATAAAAACACATGTTAACCG+TGG + Chr7:72426574-72426593 MsG0780040047.01.T01:intron 30.0%
ATAGTGACACAAATGTTCTT+GGG - Chr7:72423340-72423359 None:intergenic 30.0%
ATGCATTGTAAGTACTTTCT+TGG - Chr7:72424994-72425013 None:intergenic 30.0%
ATGTAGCTTTCACAATTATG+TGG + Chr7:72424938-72424957 MsG0780040047.01.T01:intron 30.0%
CAACTAGCAACAAGTAATTT+GGG + Chr7:72425823-72425842 MsG0780040047.01.T01:intron 30.0%
CATAGTAGAAATGTAAAGAG+GGG - Chr7:72425708-72425727 None:intergenic 30.0%
CTCTATTCAATGTAAGACTT+GGG + Chr7:72426040-72426059 MsG0780040047.01.T01:intron 30.0%
CTCTTTAGGTACAATTATCA+TGG + Chr7:72425112-72425131 MsG0780040047.01.T01:intron 30.0%
CTTCAAAATTATGCACGTAT+GGG - Chr7:72423376-72423395 None:intergenic 30.0%
GGAAGGTTAACTTCAAAAAA+TGG - Chr7:72423985-72424004 None:intergenic 30.0%
GTTGGTATGAACATTACAAT+AGG - Chr7:72427023-72427042 None:intergenic 30.0%
TAAAAACACATGTTAACCGT+GGG + Chr7:72426575-72426594 MsG0780040047.01.T01:intron 30.0%
TAACTCTTATGACCATCAAA+CGG + Chr7:72426279-72426298 MsG0780040047.01.T01:intron 30.0%
TAAGAATGTAGAAGAATCTG+TGG - Chr7:72423715-72423734 None:intergenic 30.0%
TAAGTATGCTAGCTAATACA+CGG + Chr7:72423462-72423481 MsG0780040047.01.T01:intron 30.0%
TACATTGAATAGAGATAACG+TGG - Chr7:72426034-72426053 None:intergenic 30.0%
TATGCATAATACATAGCAGA+CGG - Chr7:72427266-72427285 None:intergenic 30.0%
TCCAAGACAAGTAACAATAA+GGG + Chr7:72426402-72426421 MsG0780040047.01.T01:intron 30.0%
TCTCTATTCAATGTAAGACT+TGG + Chr7:72426039-72426058 MsG0780040047.01.T01:intron 30.0%
TGAAAACTGACCAGATAATA+AGG - Chr7:72425647-72425666 None:intergenic 30.0%
TGGAGAAAAAATCTTCAAGA+GGG + Chr7:72425314-72425333 MsG0780040047.01.T01:five_prime_UTR 30.0%
TGTCAACAAAAAGTAAGTCA+TGG - Chr7:72423194-72423213 None:intergenic 30.0%
TTAAATACTAGTGCCAAGTA+GGG + Chr7:72424859-72424878 MsG0780040047.01.T01:intron 30.0%
TTGGAGAAAAAATCTTCAAG+AGG + Chr7:72425313-72425332 MsG0780040047.01.T01:five_prime_UTR 30.0%
TTGTAAGTACTTTCTTGGAT+TGG - Chr7:72424989-72425008 None:intergenic 30.0%
TTGTTTCATTAACCAATGTC+CGG - Chr7:72426762-72426781 None:intergenic 30.0%
TTTCAACTATATACCCTACT+TGG - Chr7:72424875-72424894 None:intergenic 30.0%
TTTGATGAAGCTCAATAACA+AGG + Chr7:72424116-72424135 MsG0780040047.01.T01:intron 30.0%
! ACTCATGTATTTTCCTTTGT+GGG + Chr7:72425541-72425560 MsG0780040047.01.T01:CDS 30.0%
! AGAGCATCCACTTTATAAAA+TGG + Chr7:72426220-72426239 MsG0780040047.01.T01:intron 30.0%
! AGTCAAAATTTCACCGATTA+AGG + Chr7:72426957-72426976 MsG0780040047.01.T01:intron 30.0%
! ATTCCTTTAAACTAGTCTCA+CGG + Chr7:72423921-72423940 MsG0780040047.01.T01:intron 30.0%
! ATTTTTCTGTGCTTAATTGC+AGG + Chr7:72427217-72427236 MsG0780040047.01.T01:intron 30.0%
! CAATCCTCCATTTTATAAAG+TGG - Chr7:72426230-72426249 None:intergenic 30.0%
! CATTACTTTGCCTTATTATC+TGG + Chr7:72425634-72425653 MsG0780040047.01.T01:CDS 30.0%
! GCATACTTATATTGATGGTA+TGG - Chr7:72423451-72423470 None:intergenic 30.0%
! GCATGACAATCAATATCTTT+TGG + Chr7:72423036-72423055 MsG0780040047.01.T01:five_prime_UTR 30.0%
! GTTGACTATGTTATGACTTT+TGG + Chr7:72425800-72425819 MsG0780040047.01.T01:intron 30.0%
! TAATTTTCACTTGTACCTGT+TGG - Chr7:72423864-72423883 None:intergenic 30.0%
! TGCTCCTCTCTAAAAAAAAA+AGG + Chr7:72426717-72426736 MsG0780040047.01.T01:intron 30.0%
! TTCTTGGTTATGGTTTTCAA+TGG + Chr7:72425594-72425613 MsG0780040047.01.T01:CDS 30.0%
! TTTGATGGTCATAAGAGTTA+TGG - Chr7:72426279-72426298 None:intergenic 30.0%
! TTTGTAGAGTGATGAAGTTT+TGG + Chr7:72426373-72426392 MsG0780040047.01.T01:intron 30.0%
! TTTTCTGTTCAAGGTGAATT+TGG - Chr7:72425242-72425261 None:intergenic 30.0%
! TTTTTCTGTGCTTAATTGCA+GGG + Chr7:72427218-72427237 MsG0780040047.01.T01:intron 30.0%
!! GATTTTGACATATTTGGTTG+CGG + Chr7:72424445-72424464 MsG0780040047.01.T01:intron 30.0%
!!! CGCTTTTTTTTTTTTCCAAC+AGG + Chr7:72423846-72423865 MsG0780040047.01.T01:intron 30.0%
ACAATTTCGGCGATTCAAAA+AGG + Chr7:72423767-72423786 MsG0780040047.01.T01:intron 35.0%
AGAATGTAGAAGAATCTGTG+GGG - Chr7:72423713-72423732 None:intergenic 35.0%
AGTTTAACATGTCTGAACCA+TGG - Chr7:72422998-72423017 None:intergenic 35.0%
ATTGTACCTAAAGAGAGAGA+AGG - Chr7:72425107-72425126 None:intergenic 35.0%
ATTTGGATACAAGCATTCAC+AGG + Chr7:72425389-72425408 MsG0780040047.01.T01:CDS 35.0%
CAAATATAGTAACATCGCGT+TGG + Chr7:72426779-72426798 MsG0780040047.01.T01:intron 35.0%
CCTTCAAAATTATGCACGTA+TGG - Chr7:72423377-72423396 None:intergenic 35.0%
CTCCAAGACAAGTAACAATA+AGG + Chr7:72426401-72426420 MsG0780040047.01.T01:intron 35.0%
CTTAAATACTAGTGCCAAGT+AGG + Chr7:72424858-72424877 MsG0780040047.01.T01:intron 35.0%
CTTAGCTCATGTTATGTTTG+TGG + Chr7:72425767-72425786 MsG0780040047.01.T01:intron 35.0%
CTTTCAGTTGCATCAGATAT+GGG + Chr7:72425488-72425507 MsG0780040047.01.T01:CDS 35.0%
GAATCTATAGACATCGTAGT+TGG + Chr7:72424265-72424284 MsG0780040047.01.T01:intron 35.0%
GCAACTAGCAACAAGTAATT+TGG + Chr7:72425822-72425841 MsG0780040047.01.T01:intron 35.0%
GCATCCACTTTATAAAATGG+AGG + Chr7:72426223-72426242 MsG0780040047.01.T01:intron 35.0%
GTGAAAATTATATCCCCTAG+CGG + Chr7:72423874-72423893 MsG0780040047.01.T01:intron 35.0%
GTTTGATGCGCGAATATAAT+TGG + Chr7:72425885-72425904 MsG0780040047.01.T01:intron 35.0%
TAAATTGGTCAATGTCATGG+TGG - Chr7:72426503-72426522 None:intergenic 35.0%
TAATAGATAGAGCTTTGCAG+AGG - Chr7:72423684-72423703 None:intergenic 35.0%
TAATGTGAAGTTCAACTGTG+AGG + Chr7:72424029-72424048 MsG0780040047.01.T01:intron 35.0%
TACCAACTAAGCTATGTTCT+CGG + Chr7:72427036-72427055 MsG0780040047.01.T01:intron 35.0%
TCAAGAGGGTAGAAGAAAAA+TGG + Chr7:72425328-72425347 MsG0780040047.01.T01:exon 35.0%
TCTTTCAGTTGCATCAGATA+TGG + Chr7:72425487-72425506 MsG0780040047.01.T01:CDS 35.0%
TGAAAAACATGCACATCACA+TGG + Chr7:72424890-72424909 MsG0780040047.01.T01:intron 35.0%
TGTTTCATTAACCAATGTCC+GGG - Chr7:72426761-72426780 None:intergenic 35.0%
TTCACAATTATGTGGCACAA+TGG + Chr7:72424946-72424965 MsG0780040047.01.T01:intron 35.0%
TTCTTGGGTTCTTATGACAT+TGG - Chr7:72423325-72423344 None:intergenic 35.0%
TTGATCATGTCTGCTTTCTT+GGG + Chr7:72425569-72425588 MsG0780040047.01.T01:CDS 35.0%
TTTCAGTTGCATCAGATATG+GGG + Chr7:72425489-72425508 MsG0780040047.01.T01:CDS 35.0%
TTTGATCATGTCTGCTTTCT+TGG + Chr7:72425568-72425587 MsG0780040047.01.T01:CDS 35.0%
TTTGGATACAAGCATTCACA+GGG + Chr7:72425390-72425409 MsG0780040047.01.T01:CDS 35.0%
! AGAGTTCTTCCTCTGAAAAT+CGG - Chr7:72424006-72424025 None:intergenic 35.0%
! CACTCATGTATTTTCCTTTG+TGG + Chr7:72425540-72425559 MsG0780040047.01.T01:CDS 35.0%
! CAGCTTTTCTTTTCTGTTCA+AGG - Chr7:72425251-72425270 None:intergenic 35.0%
! CCATACGTGCATAATTTTGA+AGG + Chr7:72423374-72423393 MsG0780040047.01.T01:intron 35.0%
! CTTATTGTTACTTGTCTTGG+AGG - Chr7:72426403-72426422 None:intergenic 35.0%
! GTGGTGTGATTTTCCTAATT+AGG - Chr7:72426086-72426105 None:intergenic 35.0%
! GTTTTGTGCGCGAATATAAA+TGG + Chr7:72425845-72425864 MsG0780040047.01.T01:intron 35.0%
! TACATCTCCTATTTTCTTGG+TGG + Chr7:72425277-72425296 MsG0780040047.01.T01:five_prime_UTR 35.0%
! TCCCTTATTGTTACTTGTCT+TGG - Chr7:72426406-72426425 None:intergenic 35.0%
! TGGTGCTAATAGCAACAATT+TGG + Chr7:72425372-72425391 MsG0780040047.01.T01:CDS 35.0%
!! ATGTTTGGTTCCACTTTTAG+AGG + Chr7:72424392-72424411 MsG0780040047.01.T01:intron 35.0%
!! GTGTTGCTTTCACAAGATAA+TGG + Chr7:72423526-72423545 MsG0780040047.01.T01:intron 35.0%
!! TGTTTGGTTCCACTTTTAGA+GGG + Chr7:72424393-72424412 MsG0780040047.01.T01:intron 35.0%
!!! TGACATCTTTTTCGAAGGTT+TGG + Chr7:72424734-72424753 MsG0780040047.01.T01:intron 35.0%
!!! TTTTGACTATTGGTTGGTAG+AGG - Chr7:72425158-72425177 None:intergenic 35.0%
AATCCACCTTCTCTCTCTTT+AGG + Chr7:72425098-72425117 MsG0780040047.01.T01:intron 40.0%
ACCAACTAAGCTATGTTCTC+GGG + Chr7:72427037-72427056 MsG0780040047.01.T01:intron 40.0%
ATCAAACACCATGGTTCAGA+AGG + Chr7:72422951-72422970 MsG0780040047.01.T01:five_prime_UTR 40.0%
ATGATCAAAACCACCCACAA+AGG - Chr7:72425557-72425576 None:intergenic 40.0%
CTGGAACAGTCGTACAATTT+CGG + Chr7:72423754-72423773 MsG0780040047.01.T01:intron 40.0%
CTTCCAACCACCAAGAAAAT+AGG - Chr7:72425287-72425306 None:intergenic 40.0%
GAATGTAGAAGAATCTGTGG+GGG - Chr7:72423712-72423731 None:intergenic 40.0%
GAGGGTAGAAGAAAAATGGT+TGG + Chr7:72425332-72425351 MsG0780040047.01.T01:exon 40.0%
GCTTCATCAAAGAACGAGTT+TGG - Chr7:72424107-72424126 None:intergenic 40.0%
GGTTGGAGAATCAAGAAAGT+GGG + Chr7:72425349-72425368 MsG0780040047.01.T01:CDS 40.0%
GTCTATAGCATGACTACGAA+TGG - Chr7:72425055-72425074 None:intergenic 40.0%
GTTTCATTAACCAATGTCCG+GGG - Chr7:72426760-72426779 None:intergenic 40.0%
TAAGGGATAGGAAAGGAAAG+AGG - Chr7:72426871-72426890 None:intergenic 40.0%
TCAGAAGGAACCCTCAAAAT+GGG + Chr7:72422966-72422985 MsG0780040047.01.T01:five_prime_UTR 40.0%
TGATCATGTCTGCTTTCTTG+GGG + Chr7:72425570-72425589 MsG0780040047.01.T01:CDS 40.0%
TGATGCGCGAATATAATTGG+AGG + Chr7:72425888-72425907 MsG0780040047.01.T01:intron 40.0%
TGGTTGGAGAATCAAGAAAG+TGG + Chr7:72425348-72425367 MsG0780040047.01.T01:CDS 40.0%
TTCAGAAGGAACCCTCAAAA+TGG + Chr7:72422965-72422984 MsG0780040047.01.T01:five_prime_UTR 40.0%
TTCTGAACCATGGTGTTTGA+TGG - Chr7:72422952-72422971 None:intergenic 40.0%
TTGTTGCGGAGGATAAGAAT+TGG - Chr7:72426476-72426495 None:intergenic 40.0%
TTTCATTAACCAATGTCCGG+GGG - Chr7:72426759-72426778 None:intergenic 40.0%
! AAAGCATTTGGTTGGTGTTC+TGG + Chr7:72425512-72425531 MsG0780040047.01.T01:CDS 40.0%
! AGTTCTAACCCCTCTAAAAG+TGG - Chr7:72424405-72424424 None:intergenic 40.0%
! ATCTTACGAGCTCGTTTTGT+AGG - Chr7:72425979-72425998 None:intergenic 40.0%
! CATGTATTTTCCTTTGTGGG+TGG + Chr7:72425544-72425563 MsG0780040047.01.T01:CDS 40.0%
! GTTAACCTTCCGATTTTCAG+AGG + Chr7:72423994-72424013 MsG0780040047.01.T01:intron 40.0%
! GTTCAAGGTGAATTTGGTGA+TGG - Chr7:72425236-72425255 None:intergenic 40.0%
! TCTTACGAGCTCGTTTTGTA+GGG - Chr7:72425978-72425997 None:intergenic 40.0%
! TTCTTCCTCTGAAAATCGGA+AGG - Chr7:72424002-72424021 None:intergenic 40.0%
!! AGACCGTGAGACTAGTTTAA+AGG - Chr7:72423927-72423946 None:intergenic 40.0%
!! ATATGGGGAAAGCATTTGGT+TGG + Chr7:72425504-72425523 MsG0780040047.01.T01:CDS 40.0%
!! CTTGGATTGGCATAAAGTTG+CGG - Chr7:72424976-72424995 None:intergenic 40.0%
!! CTTTTGGATTGGATCTCTCA+AGG + Chr7:72423052-72423071 MsG0780040047.01.T01:five_prime_UTR 40.0%
!! GTTTGGTTCCACTTTTAGAG+GGG + Chr7:72424394-72424413 MsG0780040047.01.T01:intron 40.0%
!! TCAGATATGGGGAAAGCATT+TGG + Chr7:72425500-72425519 MsG0780040047.01.T01:CDS 40.0%
!! TCTCCTATTTTCTTGGTGGT+TGG + Chr7:72425281-72425300 MsG0780040047.01.T01:five_prime_UTR 40.0%
!! TTTTCTTGGTGGTTGGAAGA+AGG + Chr7:72425288-72425307 MsG0780040047.01.T01:five_prime_UTR 40.0%
!!! ACACGTGACATCTTTTTCGA+AGG + Chr7:72424729-72424748 MsG0780040047.01.T01:intron 40.0%
AAACACATGTTAACCGTGGG+TGG + Chr7:72426578-72426597 MsG0780040047.01.T01:intron 45.0%
AACACATGTTAACCGTGGGT+GGG + Chr7:72426579-72426598 MsG0780040047.01.T01:intron 45.0%
ACCCGAGAACATAGCTTAGT+TGG - Chr7:72427041-72427060 None:intergenic 45.0%
AGAAGGAACCCTCAAAATGG+GGG + Chr7:72422968-72422987 MsG0780040047.01.T01:five_prime_UTR 45.0%
AGGGAAGTGGAAAGACACTA+AGG - Chr7:72423807-72423826 None:intergenic 45.0%
CAGAAGGAACCCTCAAAATG+GGG + Chr7:72422967-72422986 MsG0780040047.01.T01:five_prime_UTR 45.0%
CGAAATTGTACGACTGTTCC+AGG - Chr7:72423756-72423775 None:intergenic 45.0%
GGAAGAAGAGAATCCAGTTC+TGG + Chr7:72426423-72426442 MsG0780040047.01.T01:intron 45.0%
GGGAAGTGGAAAGACACTAA+GGG - Chr7:72423806-72423825 None:intergenic 45.0%
GTACCTAAAGAGAGAGAAGG+TGG - Chr7:72425104-72425123 None:intergenic 45.0%
TGAAGGACCATCAAACACCA+TGG + Chr7:72422942-72422961 MsG0780040047.01.T01:five_prime_UTR 45.0%
TGGAAAGACACTAAGGGAGA+GGG - Chr7:72423800-72423819 None:intergenic 45.0%
TGGAGAATCAAGAAAGTGGG+TGG + Chr7:72425352-72425371 MsG0780040047.01.T01:CDS 45.0%
TGGTGGTTGGAAGAAGGAAT+TGG + Chr7:72425294-72425313 MsG0780040047.01.T01:five_prime_UTR 45.0%
TTCTTGGGGCTTCTTGGTTA+TGG + Chr7:72425584-72425603 MsG0780040047.01.T01:CDS 45.0%
TTGCGGAGGATAAGAATTGG+TGG - Chr7:72426473-72426492 None:intergenic 45.0%
! AAGGGTTTGTTCCTGAACGA+GGG - Chr7:72423826-72423845 None:intergenic 45.0%
! ATGGTGTTCCCCCATTTTGA+GGG - Chr7:72422979-72422998 None:intergenic 45.0%
! TCGAGATTTGCTCTAGCAGA+AGG + Chr7:72423504-72423523 MsG0780040047.01.T01:intron 45.0%
!! GTCATGGTGGAGATTTGTTG+CGG - Chr7:72426490-72426509 None:intergenic 45.0%
!!! ATTTAATCTAATTTTAAATT+AGG - Chr7:72426907-72426926 None:intergenic 5.0%
AAAATGTTAACCGGTGCCCC+CGG + Chr7:72426740-72426759 MsG0780040047.01.T01:intron 50.0%
CTCAAAATGGGGGAACACCA+TGG + Chr7:72422978-72422997 MsG0780040047.01.T01:five_prime_UTR 50.0%
GATCTCTCAAGGCTCAAGCT+TGG + Chr7:72423063-72423082 MsG0780040047.01.T01:five_prime_UTR 50.0%
GTACGCGTAAGGGATAGGAA+AGG - Chr7:72426878-72426897 None:intergenic 50.0%
GTGGAAAGACACTAAGGGAG+AGG - Chr7:72423801-72423820 None:intergenic 50.0%
TCACGGTCTCACAAAGCAAG+TGG + Chr7:72423938-72423957 MsG0780040047.01.T01:intron 50.0%
TCTGCTTTCTTGGGGCTTCT+TGG + Chr7:72425578-72425597 MsG0780040047.01.T01:CDS 50.0%
TCTTTCCACTTCCCTCGTTC+AGG + Chr7:72423812-72423831 MsG0780040047.01.T01:intron 50.0%
TGAGGGTTCCTTCTGAACCA+TGG - Chr7:72422962-72422981 None:intergenic 50.0%
TGATCTGAGAGCTTCCGCTA+GGG - Chr7:72423891-72423910 None:intergenic 50.0%
TTCTGGTGACCCACCATGAT+TGG + Chr7:72426440-72426459 MsG0780040047.01.T01:intron 50.0%
TTGATCTGAGAGCTTCCGCT+AGG - Chr7:72423892-72423911 None:intergenic 50.0%
TTGTTCCTGAACGAGGGAAG+TGG - Chr7:72423820-72423839 None:intergenic 50.0%
! AAGAGGTACGCGTAAGGGAT+AGG - Chr7:72426883-72426902 None:intergenic 50.0%
! CATGGTGTTCCCCCATTTTG+AGG - Chr7:72422980-72422999 None:intergenic 50.0%
! GAAGGGTTTGTTCCTGAACG+AGG - Chr7:72423827-72423846 None:intergenic 50.0%
! TAGGCAAGAGGTACGCGTAA+GGG - Chr7:72426888-72426907 None:intergenic 50.0%
! TTAGGCAAGAGGTACGCGTA+AGG - Chr7:72426889-72426908 None:intergenic 50.0%
!! ATGGTGGAGATTTGTTGCGG+AGG - Chr7:72426487-72426506 None:intergenic 50.0%
AAGTATCAGGGTCGTACGCC+TGG + Chr7:72423735-72423754 MsG0780040047.01.T01:intron 55.0%
ATGTTAACCGTGGGTGGGAG+TGG + Chr7:72426584-72426603 MsG0780040047.01.T01:intron 55.0%
GACCCACCATGATTGGTGAG+AGG + Chr7:72426447-72426466 MsG0780040047.01.T01:intron 55.0%
GATCTGAGAGCTTCCGCTAG+GGG - Chr7:72423890-72423909 None:intergenic 55.0%
GGCCTCTCACCAATCATGGT+GGG - Chr7:72426452-72426471 None:intergenic 55.0%
TGGCCTCTCACCAATCATGG+TGG - Chr7:72426453-72426472 None:intergenic 55.0%
TGGTGGCCTCTCACCAATCA+TGG - Chr7:72426456-72426475 None:intergenic 55.0%
TGTTAACCGTGGGTGGGAGT+GGG + Chr7:72426585-72426604 MsG0780040047.01.T01:intron 55.0%
TTGCAGGGTGTAGCATCTGC+TGG + Chr7:72427233-72427252 MsG0780040047.01.T01:intron 55.0%
!! TCATGGTGGGTCACCAGAAC+TGG - Chr7:72426439-72426458 None:intergenic 55.0%
! TAACCAATGTCCGGGGGCAC+CGG - Chr7:72426753-72426772 None:intergenic 60.0%
TAACCGGTGCCCCCGGACAT+TGG + Chr7:72426747-72426766 MsG0780040047.01.T01:intron 65.0%
TAACCGTGGGTGGGAGTGGG+AGG + Chr7:72426588-72426607 MsG0780040047.01.T01:intron 65.0%
TCTCCTCCCACTCCCACCCA+CGG - Chr7:72426594-72426613 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 72422937 72427286 72422937 ID=MsG0780040047.01;Name=MsG0780040047.01
Chr7 mRNA 72422937 72427286 72422937 ID=MsG0780040047.01.T01;Parent=MsG0780040047.01;Name=MsG0780040047.01.T01;_AED=0.47;_eAED=0.50;_QI=403|0.5|0.66|1|0.5|0.33|3|0|118
Chr7 exon 72422937 72423112 72422937 ID=MsG0780040047.01.T01:exon:9802;Parent=MsG0780040047.01.T01
Chr7 exon 72425120 72425655 72425120 ID=MsG0780040047.01.T01:exon:9803;Parent=MsG0780040047.01.T01
Chr7 exon 72427239 72427286 72427239 ID=MsG0780040047.01.T01:exon:9804;Parent=MsG0780040047.01.T01
Chr7 five_prime_UTR 72422937 72423112 72422937 ID=MsG0780040047.01.T01:five_prime_utr;Parent=MsG0780040047.01.T01
Chr7 five_prime_UTR 72425120 72425346 72425120 ID=MsG0780040047.01.T01:five_prime_utr;Parent=MsG0780040047.01.T01
Chr7 CDS 72425347 72425655 72425347 ID=MsG0780040047.01.T01:cds;Parent=MsG0780040047.01.T01
Chr7 CDS 72427239 72427286 72427239 ID=MsG0780040047.01.T01:cds;Parent=MsG0780040047.01.T01
Gene Sequence

>MsG0780040047.01.T01

ATGGTTGGAGAATCAAGAAAGTGGGTGGTGCTAATAGCAACAATTTGGATACAAGCATTCACAGGGACAAACTTTGACTTCTCATCATATTCATCTGAGATGAAATCAGTTCTTGATATAACTCAGCTTCAGCTGAATTCTCTTTCAGTTGCATCAGATATGGGGAAAGCATTTGGTTGGTGTTCTGGTGTCACACTCATGTATTTTCCTTTGTGGGTGGTTTTGATCATGTCTGCTTTCTTGGGGCTTCTTGGTTATGGTTTTCAATGGCTTTTTATTCAAAGACTCATTACTTTGCCTTATTATCTGGGTGTAGCATCTGCTGGTTCAACACCGTCTGCTATGTATTATGCATAA

Protein sequence

>MsG0780040047.01.T01

MVGESRKWVVLIATIWIQAFTGTNFDFSSYSSEMKSVLDITQLQLNSLSVASDMGKAFGWCSGVTLMYFPLWVVLIMSAFLGLLGYGFQWLFIQRLITLPYYLGVASAGSTPSAMYYA*