AlfalfaGEDB | MsG0380013946.01

M. sativa cultivar ZhongmuNo.1 / MsG0380013946.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013946.01.T01	YP_009141651.1	98.034	356	1	1	1	356	1529	1878	0	718

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013946.01.T01	Q0ZIV6	75.207	363	73	7	1	356	1939	2291	2.75E-164	511

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013946.01.T01	A0A0F6NLP8	98.034	356	1	1	1	356	1529	1878	0.0	718

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048059.01	MsG0380013946.01	0.802294	6.005712e-49	2.931261e-46
MsG0080048560.01	MsG0380013946.01	0.823325	1.471778e-53	1.263145e-50
MsG0080048690.01	MsG0380013946.01	0.823302	1.490390e-53	1.278308e-50
MsG0080048691.01	MsG0380013946.01	0.802820	4.679305e-49	2.314705e-46
MsG0080048692.01	MsG0380013946.01	0.809954	1.465419e-50	8.722419e-48
MsG0080048697.01	MsG0380013946.01	0.805936	1.049367e-49	5.623242e-47
MsG0080049133.01	MsG0380013946.01	0.812578	3.950730e-51	2.521243e-48
MsG0180001925.01	MsG0380013946.01	0.809767	1.608010e-50	9.524474e-48
MsG0180002214.01	MsG0380013946.01	0.805070	1.593883e-49	8.353441e-47
MsG0180003605.01	MsG0380013946.01	0.810307	1.229992e-50	7.388455e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013946.01.T01	MTR_3g035670	92.416	356	21	1	1	356	1	350	0.0	662
MsG0380013946.01.T01	MTR_4g051435	92.748	262	19	0	1	262	1131	1392	6.16e-169	510
MsG0380013946.01.T01	MTR_0055s0010	79.021	286	25	1	1	286	287	537	5.36e-158	455
MsG0380013946.01.T01	MTR_0055s0010	81.250	64	6	1	292	355	13	70	3.69e-21	95.1
MsG0380013946.01.T01	MTR_0052s0190	79.021	286	25	1	1	286	290	540	7.12e-158	454
MsG0380013946.01.T01	MTR_0052s0190	81.250	64	6	1	292	355	16	73	3.82e-21	95.1
MsG0380013946.01.T01	MTR_0689s0010	74.368	277	62	4	1	270	620	894	9.28e-126	383
MsG0380013946.01.T01	MTR_8g087850	76.000	50	10	1	110	157	1	50	4.28e-17	75.1
MsG0380013946.01.T01	MTR_3g101000	53.521	71	20	3	51	119	27	86	6.28e-13	64.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380013946.01.T01	ATCG01280	70.799	363	89	6	1	356	1933	2285	7.92e-147	459
MsG0380013946.01.T01	ATCG00860	70.799	363	89	6	1	356	1933	2285	7.92e-147	459

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Find 87 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGGACTTCCTGTCTGTG+AGG	0.680047	3:-48489361	None:intergenic
AAATCCTCCTCTAGCGGGTC+GGG	0.367895	3:-48489525	None:intergenic
AACAATTCGAAATTCTGTTC+TGG	0.421823	3:-48489972	None:intergenic
AAGAAGAAATCATGTAACGT+GGG	0.593439	3:+48489114	MsG0380013946.01.T01:CDS
AAGACATTGTTGAGAAAAGA+TGG	0.431036	3:+48490131	MsG0380013946.01.T01:CDS
AATAGATCTTTCAAAGAACA+AGG	0.632821	3:+48489753	MsG0380013946.01.T01:CDS
AATCCTCCTCTAGCGGGTCG+GGG	0.553571	3:-48489524	None:intergenic
AATGATTCTGATCTAGTTCA+TGG	0.304121	3:+48489306	MsG0380013946.01.T01:CDS
AGAAGAAATCATGTAACGTG+GGG	0.629137	3:+48489115	MsG0380013946.01.T01:CDS
AGAAGTAGAAGGTGCTCTGC+TGG	0.419978	3:+48489335	MsG0380013946.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAATTCGAAATTCTGTTC+TGG	-	Chr3:48489975-48489994	None:intergenic	30.0%
AAGAAGAAATCATGTAACGT+GGG	+	Chr3:48489114-48489133	MsG0380013946.01.T01:CDS	30.0%
AAGACATTGTTGAGAAAAGA+TGG	+	Chr3:48490131-48490150	MsG0380013946.01.T01:CDS	30.0%
ATCATATTTATGGGATTCCT+TGG	-	Chr3:48489423-48489442	None:intergenic	30.0%
ATGGAGTAACATTTCTTCTT+AGG	+	Chr3:48489391-48489410	MsG0380013946.01.T01:CDS	30.0%
CAGATCATTTATGATGAAGA+GGG	+	Chr3:48489669-48489688	MsG0380013946.01.T01:CDS	30.0%
CATAGAGAAATCTATGATCA+AGG	-	Chr3:48489467-48489486	None:intergenic	30.0%
CATCAAATAGAAATTCCCAA+GGG	-	Chr3:48489587-48489606	None:intergenic	30.0%
CTTTGTAATTTGAGCCAATA+GGG	-	Chr3:48490114-48490133	None:intergenic	30.0%
GGAAATATCTAAATAAACGC+TGG	+	Chr3:48489934-48489953	MsG0380013946.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	48489111	48490214	48489111	ID=MsG0380013946.01;Name=MsG0380013946.01
Chr3	mRNA	48489111	48490214	48489111	ID=MsG0380013946.01.T01;Parent=MsG0380013946.01;Name=MsG0380013946.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|367
Chr3	exon	48489111	48490214	48489111	ID=MsG0380013946.01.T01:exon:8509;Parent=MsG0380013946.01.T01
Chr3	CDS	48489111	48490214	48489111	ID=MsG0380013946.01.T01:cds;Parent=MsG0380013946.01.T01

Gene Sequence

>MsG0380013946.01.T01

ATGAAGAAGAAATCATGTAACGTGGGGGATTCTGATTTGTACAAATGGTACTTGGAACTTGGAACAAGCATGAAGAAATTAACGATACTTCTTTATCTTTTGAGTTGTTCTGCCGGATCCGTTGCTCAAAACCTTTGGTCTCTAACCGGACCTAATGAAAAAAATGATGGGATCACTTCTTATAGACTCCTTTATAATGATTCTGATCTAGTTCATGGCCTATTAGAAGTAGAAGGTGCTCTGCTGGGATCCTCACAGACAGGAAGTCCGTTTGATAATGATGGAGTAACATTTCTTCTTAGGCCCGAACCAAGGAATCCCATAAATATGATTCAAAATGGATCTCGTTCTATCCTTGATCATAGATTTCTCTATGAAAAATATGAATCGGGGTTCGAAGAAGGGGAAGGAGGCCCCGACCCGCTAGAGGAGGATTTATTCAATCACATAGTTTGGGCTCCTAGAATATGGCGCCCTTGGGAATTTCTATTTGATGATTGGATCGAAAGGTCCAATGAATTCGGATTTCCCTATTGGGAAAGGTCATTTTGGGACAAGCAGATCATTTATGATGAAGAGGGTGAGCTTAAAGAGAATGATTCGGAGTTCTTGGAGGATGGAACCATGGAGTACCAGACACAAAATAGATCTTTCAAAGAACAAGGCGTTTTTCGAATAAGCCAATTCATTTGGGACCCCGCGGATCCACTCTTTTTGCTATTCCAAGATGATCCTTTTGTATCTGTGTTTTCACATCGAGAATTGCTTACAGATGAGGAGATGTCAAATAGACTTTTGACTTGCCAAACAAAAAAAATTTATTGGAAATATCTAAATAAACGCTGGTTTAGGAAGAATATGCCAGAACAGAATTTCGAATTGTTGATTGATCGACAGAGACAGTTTAGAACCAATAGTTCATTATCAAATGAATTGTTTCGTTCTAATACTCTATCCGAGAGTTATCAATATTTATCAAATCTGTTCCTATCTAATGGAACCCTATTGGCTCAAATTACAAAGACATTGTTGAGAAAAGATGGCTTTTCCCGGAGGAGATGGTTGTTACTATCTGTTCCAATAACGAATGATTGGTTTAACTGA

Protein sequence

>MsG0380013946.01.T01

MKKKSCNVGDSDLYKWYLELGTSMKKLTILLYLLSCSAGSVAQNLWSLTGPNEKNDGITSYRLLYNDSDLVHGLLEVEGALLGSSQTGSPFDNDGVTFLLRPEPRNPINMIQNGSRSILDHRFLYEKYESGFEEGEGGPDPLEEDLFNHIVWAPRIWRPWEFLFDDWIERSNEFGFPYWERSFWDKQIIYDEEGELKENDSEFLEDGTMEYQTQNRSFKEQGVFRISQFIWDPADPLFLLFQDDPFVSVFSHRELLTDEEMSNRLLTCQTKKIYWKYLNKRWFRKNMPEQNFELLIDRQRQFRTNSSLSNELFRSNTLSESYQYLSNLFLSNGTLLAQITKTLLRKDGFSRRRWLLLSVPITNDWFN*