Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013946.01.T01 | YP_009141651.1 | 98.034 | 356 | 1 | 1 | 1 | 356 | 1529 | 1878 | 0 | 718 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013946.01.T01 | Q0ZIV6 | 75.207 | 363 | 73 | 7 | 1 | 356 | 1939 | 2291 | 2.75E-164 | 511 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013946.01.T01 | A0A0F6NLP8 | 98.034 | 356 | 1 | 1 | 1 | 356 | 1529 | 1878 | 0.0 | 718 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048059.01 | MsG0380013946.01 | 0.802294 | 6.005712e-49 | 2.931261e-46 |
| MsG0080048560.01 | MsG0380013946.01 | 0.823325 | 1.471778e-53 | 1.263145e-50 |
| MsG0080048690.01 | MsG0380013946.01 | 0.823302 | 1.490390e-53 | 1.278308e-50 |
| MsG0080048691.01 | MsG0380013946.01 | 0.802820 | 4.679305e-49 | 2.314705e-46 |
| MsG0080048692.01 | MsG0380013946.01 | 0.809954 | 1.465419e-50 | 8.722419e-48 |
| MsG0080048697.01 | MsG0380013946.01 | 0.805936 | 1.049367e-49 | 5.623242e-47 |
| MsG0080049133.01 | MsG0380013946.01 | 0.812578 | 3.950730e-51 | 2.521243e-48 |
| MsG0180001925.01 | MsG0380013946.01 | 0.809767 | 1.608010e-50 | 9.524474e-48 |
| MsG0180002214.01 | MsG0380013946.01 | 0.805070 | 1.593883e-49 | 8.353441e-47 |
| MsG0180003605.01 | MsG0380013946.01 | 0.810307 | 1.229992e-50 | 7.388455e-48 |
| MsG0180003757.01 | MsG0380013946.01 | 0.812053 | 5.144557e-51 | 3.236995e-48 |
| MsG0180004301.01 | MsG0380013946.01 | 0.819082 | 1.399773e-52 | 1.066580e-49 |
| MsG0180004502.01 | MsG0380013946.01 | 0.800838 | 1.194213e-48 | 5.617488e-46 |
| MsG0180004553.01 | MsG0380013946.01 | 0.807747 | 4.346570e-50 | 2.440544e-47 |
| MsG0180005791.01 | MsG0380013946.01 | 0.805252 | 1.460384e-49 | 7.689006e-47 |
| MsG0280011301.01 | MsG0380013946.01 | 0.808830 | 2.554122e-50 | 1.475400e-47 |
| MsG0380012065.01 | MsG0380013946.01 | 0.801078 | 1.067058e-48 | 5.050023e-46 |
| MsG0380013114.01 | MsG0380013946.01 | 0.804104 | 2.535081e-49 | 1.295942e-46 |
| MsG0380013448.01 | MsG0380013946.01 | 0.808786 | 2.610093e-50 | 1.505954e-47 |
| MsG0380013914.01 | MsG0380013946.01 | 0.936228 | 2.426429e-97 | 2.045831e-92 |
| MsG0380013926.01 | MsG0380013946.01 | 0.803617 | 3.200370e-49 | 1.615677e-46 |
| MsG0380013928.01 | MsG0380013946.01 | 0.807334 | 5.318957e-50 | 2.954591e-47 |
| MsG0380013929.01 | MsG0380013946.01 | 0.803020 | 4.253987e-49 | 2.114815e-46 |
| MsG0380013941.01 | MsG0380013946.01 | 0.805958 | 1.038006e-49 | 5.565675e-47 |
| MsG0380013943.01 | MsG0380013946.01 | 0.819648 | 1.040068e-52 | 8.050555e-50 |
| MsG0380013945.01 | MsG0380013946.01 | 0.816772 | 4.653857e-52 | 3.327951e-49 |
| MsG0380013946.01 | MsG0380013951.01 | 0.801476 | 8.845482e-49 | 4.228352e-46 |
| MsG0380013946.01 | MsG0380013956.01 | 0.814729 | 1.328000e-51 | 8.981220e-49 |
| MsG0380013946.01 | MsG0380013968.01 | 0.802241 | 6.158201e-49 | 3.001535e-46 |
| MsG0380013946.01 | MsG0380013971.01 | 0.817499 | 3.194798e-52 | 2.330567e-49 |
| MsG0380013946.01 | MsG0380013975.01 | 0.824399 | 8.245563e-54 | 7.294832e-51 |
| MsG0380013946.01 | MsG0380013977.01 | 0.806336 | 8.643092e-50 | 4.679017e-47 |
| MsG0380013946.01 | MsG0380013999.01 | 0.804856 | 1.766918e-49 | 9.209807e-47 |
| MsG0380013946.01 | MsG0380014005.01 | 0.822900 | 1.849384e-53 | 1.568425e-50 |
| MsG0380013946.01 | MsG0380014017.01 | 0.803580 | 3.256855e-49 | 1.642753e-46 |
| MsG0380013946.01 | MsG0380014020.01 | 0.807991 | 3.857470e-50 | 2.179767e-47 |
| MsG0380013946.01 | MsG0380014023.01 | 0.809681 | 1.677601e-50 | 9.913927e-48 |
| MsG0380013946.01 | MsG0380014024.01 | 0.810400 | 1.174744e-50 | 7.073708e-48 |
| MsG0380013946.01 | MsG0380014026.01 | 0.813985 | 1.939410e-51 | 1.285380e-48 |
| MsG0380013946.01 | MsG0380014029.01 | 0.803964 | 2.710596e-49 | 1.380728e-46 |
| MsG0380013946.01 | MsG0380014032.01 | 0.818026 | 2.430171e-52 | 1.798467e-49 |
| MsG0380013946.01 | MsG0380014033.01 | 0.820231 | 7.651431e-53 | 6.019442e-50 |
| MsG0380013946.01 | MsG0380015200.01 | 0.809490 | 1.844170e-50 | 1.084248e-47 |
| MsG0380013946.01 | MsG0380015201.01 | 0.814328 | 1.629392e-51 | 1.090063e-48 |
| MsG0380013946.01 | MsG0380015348.01 | 0.816813 | 4.557972e-52 | 3.262944e-49 |
| MsG0380013946.01 | MsG0380016424.01 | 0.805090 | 1.578485e-49 | 8.276809e-47 |
| MsG0380013946.01 | MsG0380016790.01 | 0.813988 | 1.937183e-51 | 1.284013e-48 |
| MsG0380013946.01 | MsG0380016931.01 | 0.800161 | 1.641226e-48 | 7.588083e-46 |
| MsG0380013946.01 | MsG0380017007.01 | 0.800730 | 1.256582e-48 | 5.894455e-46 |
| MsG0380013946.01 | MsG0380017405.01 | 0.824234 | 9.015884e-54 | 7.939397e-51 |
| MsG0380013946.01 | MsG0380017406.01 | 0.807172 | 5.754207e-50 | 3.182938e-47 |
| MsG0380013946.01 | MsG0380017962.01 | 0.811984 | 5.326543e-51 | 3.345257e-48 |
| MsG0380013946.01 | MsG0480018201.01 | 0.805420 | 1.346266e-49 | 7.119232e-47 |
| MsG0380013946.01 | MsG0480018202.01 | 0.800328 | 1.517334e-48 | 7.045713e-46 |
| MsG0380013946.01 | MsG0480018203.01 | 0.804957 | 1.683306e-49 | 8.796738e-47 |
| MsG0380013946.01 | MsG0480018296.01 | 0.825247 | 5.201648e-54 | 4.715593e-51 |
| MsG0380013946.01 | MsG0480018494.01 | 0.806063 | 9.867881e-50 | 5.305145e-47 |
| MsG0380013946.01 | MsG0480019861.01 | 0.806107 | 9.659332e-50 | 5.198802e-47 |
| MsG0380013946.01 | MsG0480021327.01 | 0.820456 | 6.792786e-53 | 5.377757e-50 |
| MsG0380013946.01 | MsG0480021331.01 | 0.815876 | 7.385982e-52 | 5.153494e-49 |
| MsG0380013946.01 | MsG0480022296.01 | 0.807486 | 4.937486e-50 | 2.753587e-47 |
| MsG0380013946.01 | MsG0480022591.01 | 0.815684 | 8.148733e-52 | 5.656361e-49 |
| MsG0380013946.01 | MsG0580024493.01 | 0.810271 | 1.252490e-50 | 7.516578e-48 |
| MsG0380013946.01 | MsG0580027677.01 | 0.822298 | 2.553248e-53 | 2.128607e-50 |
| MsG0380013946.01 | MsG0580030197.01 | 0.812307 | 4.527361e-51 | 2.868491e-48 |
| MsG0380013946.01 | MsG0680030439.01 | 0.812120 | 4.973337e-51 | 3.135077e-48 |
| MsG0380013946.01 | MsG0680034229.01 | 0.805354 | 1.390342e-49 | 7.339782e-47 |
| MsG0380013946.01 | MsG0780037698.01 | 0.802258 | 6.111319e-49 | 2.979905e-46 |
| MsG0380013946.01 | MsG0780038047.01 | 0.813091 | 3.050695e-51 | 1.973366e-48 |
| MsG0380013946.01 | MsG0780038108.01 | 0.802618 | 5.150007e-49 | 2.534345e-46 |
| MsG0380013946.01 | MsG0780038197.01 | 0.817668 | 2.925952e-52 | 2.144344e-49 |
| MsG0380013946.01 | MsG0780039839.01 | 0.815262 | 1.011541e-51 | 6.940334e-49 |
| MsG0380013946.01 | MsG0780040121.01 | 0.811743 | 6.009336e-51 | 3.749892e-48 |
| MsG0380013946.01 | MsG0780040321.01 | 0.805085 | 1.582321e-49 | 8.295904e-47 |
| MsG0380013946.01 | MsG0780041254.01 | 0.809027 | 2.318163e-50 | 1.346158e-47 |
| MsG0380013946.01 | MsG0780041720.01 | 0.810499 | 1.118369e-50 | 6.752171e-48 |
| MsG0380013946.01 | MsG0780041783.01 | 0.822752 | 2.002727e-53 | 1.691408e-50 |
| MsG0380013946.01 | MsG0880041835.01 | 0.800066 | 1.715442e-48 | 7.912563e-46 |
| MsG0380013946.01 | MsG0880042858.01 | 0.808288 | 3.333328e-50 | 1.898494e-47 |
| MsG0380013946.01 | MsG0880045188.01 | 0.801128 | 1.042044e-48 | 4.937876e-46 |
| MsG0380013946.01 | MsG0880045369.01 | 0.812855 | 3.435849e-51 | 2.208577e-48 |
| MsG0380013946.01 | MsG0880045385.01 | 0.823320 | 1.475516e-53 | 1.266195e-50 |
| MsG0380013946.01 | MsG0880046469.01 | 0.821279 | 4.393864e-53 | 3.558696e-50 |
| MsG0380013946.01 | MsG0880047318.01 | 0.808479 | 3.035601e-50 | 1.737579e-47 |
| MsG0280009518.01 | MsG0380013946.01 | 0.803311 | 3.704513e-49 | 1.855436e-46 |
| MsG0280009742.01 | MsG0380013946.01 | 0.811327 | 7.398618e-51 | 4.566151e-48 |
| MsG0280010137.01 | MsG0380013946.01 | 0.825592 | 4.308833e-54 | 3.944753e-51 |
| MsG0280010142.01 | MsG0380013946.01 | 0.802596 | 5.204199e-49 | 2.559598e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013946.01.T01 | MTR_3g035670 | 92.416 | 356 | 21 | 1 | 1 | 356 | 1 | 350 | 0.0 | 662 |
| MsG0380013946.01.T01 | MTR_4g051435 | 92.748 | 262 | 19 | 0 | 1 | 262 | 1131 | 1392 | 6.16e-169 | 510 |
| MsG0380013946.01.T01 | MTR_0055s0010 | 79.021 | 286 | 25 | 1 | 1 | 286 | 287 | 537 | 5.36e-158 | 455 |
| MsG0380013946.01.T01 | MTR_0055s0010 | 81.250 | 64 | 6 | 1 | 292 | 355 | 13 | 70 | 3.69e-21 | 95.1 |
| MsG0380013946.01.T01 | MTR_0052s0190 | 79.021 | 286 | 25 | 1 | 1 | 286 | 290 | 540 | 7.12e-158 | 454 |
| MsG0380013946.01.T01 | MTR_0052s0190 | 81.250 | 64 | 6 | 1 | 292 | 355 | 16 | 73 | 3.82e-21 | 95.1 |
| MsG0380013946.01.T01 | MTR_0689s0010 | 74.368 | 277 | 62 | 4 | 1 | 270 | 620 | 894 | 9.28e-126 | 383 |
| MsG0380013946.01.T01 | MTR_8g087850 | 76.000 | 50 | 10 | 1 | 110 | 157 | 1 | 50 | 4.28e-17 | 75.1 |
| MsG0380013946.01.T01 | MTR_3g101000 | 53.521 | 71 | 20 | 3 | 51 | 119 | 27 | 86 | 6.28e-13 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380013946.01.T01 | ATCG01280 | 70.799 | 363 | 89 | 6 | 1 | 356 | 1933 | 2285 | 7.92e-147 | 459 |
| MsG0380013946.01.T01 | ATCG00860 | 70.799 | 363 | 89 | 6 | 1 | 356 | 1933 | 2285 | 7.92e-147 | 459 |
Find 87 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTATTGGGAAAGGTCATTT+TGG | 0.170817 | 3:+48489640 | MsG0380013946.01.T01:CDS |
| ATGGAGTAACATTTCTTCTT+AGG | 0.232828 | 3:+48489391 | MsG0380013946.01.T01:CDS |
| TTAAACCAATCATTCGTTAT+TGG | 0.237825 | 3:-48490188 | None:intergenic |
| AGAGAATGATTCGGAGTTCT+TGG | 0.255304 | 3:+48489701 | MsG0380013946.01.T01:CDS |
| ATGAATTCGGATTTCCCTAT+TGG | 0.265519 | 3:+48489625 | MsG0380013946.01.T01:CDS |
| ATTTATTCAATCACATAGTT+TGG | 0.269815 | 3:+48489544 | MsG0380013946.01.T01:CDS |
| TCAAATCTGTTCCTATCTAA+TGG | 0.278868 | 3:+48490086 | MsG0380013946.01.T01:CDS |
| TTCGAATAAGCCAATTCATT+TGG | 0.284732 | 3:+48489781 | MsG0380013946.01.T01:CDS |
| CCCATAAATATGATTCAAAA+TGG | 0.288488 | 3:+48489429 | MsG0380013946.01.T01:CDS |
| GGGAATTTCTATTTGATGAT+TGG | 0.291072 | 3:+48489589 | MsG0380013946.01.T01:CDS |
| AATGATTCTGATCTAGTTCA+TGG | 0.304121 | 3:+48489306 | MsG0380013946.01.T01:CDS |
| TTCATTTGATAATGAACTAT+TGG | 0.304214 | 3:-48490021 | None:intergenic |
| CTGTTCCAATAACGAATGAT+TGG | 0.344240 | 3:+48490183 | MsG0380013946.01.T01:CDS |
| TGAATTCGGATTTCCCTATT+GGG | 0.346409 | 3:+48489626 | MsG0380013946.01.T01:CDS |
| CCAAAATGACCTTTCCCAAT+AGG | 0.349297 | 3:-48489640 | None:intergenic |
| TCCCAAGGGCGCCATATTCT+AGG | 0.351352 | 3:-48489570 | None:intergenic |
| TTTATGGGATTCCTTGGTTC+GGG | 0.355835 | 3:-48489414 | None:intergenic |
| CTTTGTAATTTGAGCCAATA+GGG | 0.367342 | 3:-48490111 | None:intergenic |
| AAATCCTCCTCTAGCGGGTC+GGG | 0.367895 | 3:-48489525 | None:intergenic |
| TAGTTTGGGCTCCTAGAATA+TGG | 0.369050 | 3:+48489559 | MsG0380013946.01.T01:CDS |
| TACAAATGGTACTTGGAACT+TGG | 0.369649 | 3:+48489150 | MsG0380013946.01.T01:CDS |
| TTTATTCAATCACATAGTTT+GGG | 0.370059 | 3:+48489545 | MsG0380013946.01.T01:CDS |
| TCGAATAAGCCAATTCATTT+GGG | 0.375476 | 3:+48489782 | MsG0380013946.01.T01:CDS |
| GAGCACCTTCTACTTCTAAT+AGG | 0.384914 | 3:-48489329 | None:intergenic |
| CTCCTAGAATATGGCGCCCT+TGG | 0.387700 | 3:+48489568 | MsG0380013946.01.T01:CDS |
| ATTTATGGGATTCCTTGGTT+CGG | 0.392730 | 3:-48489415 | None:intergenic |
| GATCCGTTGCTCAAAACCTT+TGG | 0.396938 | 3:+48489226 | MsG0380013946.01.T01:CDS |
| ATCTAAATAAACGCTGGTTT+AGG | 0.398191 | 3:+48489940 | MsG0380013946.01.T01:CDS |
| CTAGATCAGAATCATTATAA+AGG | 0.398205 | 3:-48489299 | None:intergenic |
| CCTATCTAATGGAACCCTAT+TGG | 0.403904 | 3:+48490097 | MsG0380013946.01.T01:CDS |
| ATCATATTTATGGGATTCCT+TGG | 0.407279 | 3:-48489420 | None:intergenic |
| CCGCGGGGTCCCAAATGAAT+TGG | 0.407857 | 3:-48489791 | None:intergenic |
| ATCGAAAGGTCCAATGAATT+CGG | 0.416225 | 3:+48489612 | MsG0380013946.01.T01:CDS |
| TGATTTGTACAAATGGTACT+TGG | 0.419738 | 3:+48489143 | MsG0380013946.01.T01:CDS |
| AGAAGTAGAAGGTGCTCTGC+TGG | 0.419978 | 3:+48489335 | MsG0380013946.01.T01:CDS |
| AACAATTCGAAATTCTGTTC+TGG | 0.421823 | 3:-48489972 | None:intergenic |
| CAAAATGACCTTTCCCAATA+GGG | 0.426571 | 3:-48489639 | None:intergenic |
| AAGACATTGTTGAGAAAAGA+TGG | 0.431036 | 3:+48490131 | MsG0380013946.01.T01:CDS |
| TCCTAGAATATGGCGCCCTT+GGG | 0.447151 | 3:+48489569 | MsG0380013946.01.T01:CDS |
| TCTTTGTAATTTGAGCCAAT+AGG | 0.449364 | 3:-48490112 | None:intergenic |
| CAAAACCTTTGGTCTCTAAC+CGG | 0.457591 | 3:+48489237 | MsG0380013946.01.T01:CDS |
| CCAATAGGGTTCCATTAGAT+AGG | 0.460858 | 3:-48490097 | None:intergenic |
| CATAGAGAAATCTATGATCA+AGG | 0.469687 | 3:-48489464 | None:intergenic |
| GGGATTCTGATTTGTACAAA+TGG | 0.473172 | 3:+48489136 | MsG0380013946.01.T01:CDS |
| CATGGCCTATTAGAAGTAGA+AGG | 0.479089 | 3:+48489324 | MsG0380013946.01.T01:CDS |
| ATAGGGAAATCCGAATTCAT+TGG | 0.479507 | 3:-48489622 | None:intergenic |
| GGAAGTCCGTTTGATAATGA+TGG | 0.490436 | 3:+48489372 | MsG0380013946.01.T01:CDS |
| CAGATACAAAAGGATCATCT+TGG | 0.493426 | 3:-48489833 | None:intergenic |
| ATAGTAACAACCATCTCCTC+CGG | 0.504498 | 3:-48490160 | None:intergenic |
| TATGAATCGGGGTTCGAAGA+AGG | 0.513475 | 3:+48489492 | MsG0380013946.01.T01:CDS |
| GATTCGGAGTTCTTGGAGGA+TGG | 0.514704 | 3:+48489708 | MsG0380013946.01.T01:CDS |
| TGTGAAAACACAGATACAAA+AGG | 0.517955 | 3:-48489843 | None:intergenic |
| TGAATAAATCCTCCTCTAGC+GGG | 0.519418 | 3:-48489530 | None:intergenic |
| TGATAAATATTGATAACTCT+CGG | 0.522505 | 3:-48490066 | None:intergenic |
| GTTACTCCATCATTATCAAA+CGG | 0.537400 | 3:-48489378 | None:intergenic |
| TCGGATTTCCCTATTGGGAA+AGG | 0.537936 | 3:+48489631 | MsG0380013946.01.T01:CDS |
| TTGAATAAATCCTCCTCTAG+CGG | 0.541747 | 3:-48489531 | None:intergenic |
| GAATGATTCGGAGTTCTTGG+AGG | 0.544713 | 3:+48489704 | MsG0380013946.01.T01:CDS |
| ATGAATCGGGGTTCGAAGAA+GGG | 0.548025 | 3:+48489493 | MsG0380013946.01.T01:CDS |
| GCAGATCATTTATGATGAAG+AGG | 0.548388 | 3:+48489668 | MsG0380013946.01.T01:CDS |
| AATCCTCCTCTAGCGGGTCG+GGG | 0.553571 | 3:-48489524 | None:intergenic |
| GGAAATATCTAAATAAACGC+TGG | 0.554838 | 3:+48489934 | MsG0380013946.01.T01:CDS |
| CTGCTGGGATCCTCACAGAC+AGG | 0.554884 | 3:+48489351 | MsG0380013946.01.T01:CDS |
| TGAGCTTAAAGAGAATGATT+CGG | 0.559223 | 3:+48489692 | MsG0380013946.01.T01:CDS |
| GGGTTCGAAGAAGGGGAAGG+AGG | 0.562946 | 3:+48489501 | MsG0380013946.01.T01:CDS |
| GAAGTAGAAGGTGCTCTGCT+GGG | 0.567953 | 3:+48489336 | MsG0380013946.01.T01:CDS |
| TATTTGATGATTGGATCGAA+AGG | 0.571806 | 3:+48489598 | MsG0380013946.01.T01:CDS |
| TAAATCCTCCTCTAGCGGGT+CGG | 0.574866 | 3:-48489526 | None:intergenic |
| AGGAGGCCCCGACCCGCTAG+AGG | 0.576148 | 3:+48489518 | MsG0380013946.01.T01:CDS |
| AGGCCCCGACCCGCTAGAGG+AGG | 0.576654 | 3:+48489521 | MsG0380013946.01.T01:CDS |
| TCGAGAATTGCTTACAGATG+AGG | 0.581646 | 3:+48489866 | MsG0380013946.01.T01:CDS |
| TCGGGGTTCGAAGAAGGGGA+AGG | 0.588070 | 3:+48489498 | MsG0380013946.01.T01:CDS |
| TAGGTCCGGTTAGAGACCAA+AGG | 0.589149 | 3:-48489242 | None:intergenic |
| AAGAAGAAATCATGTAACGT+GGG | 0.593439 | 3:+48489114 | MsG0380013946.01.T01:CDS |
| TAGTAACAACCATCTCCTCC+GGG | 0.594904 | 3:-48490159 | None:intergenic |
| CAGATCATTTATGATGAAGA+GGG | 0.600306 | 3:+48489669 | MsG0380013946.01.T01:CDS |
| TGAATCGGGGTTCGAAGAAG+GGG | 0.601862 | 3:+48489494 | MsG0380013946.01.T01:CDS |
| TTCTTCTTAGGCCCGAACCA+AGG | 0.620003 | 3:+48489403 | MsG0380013946.01.T01:CDS |
| AGAAGAAATCATGTAACGTG+GGG | 0.629137 | 3:+48489115 | MsG0380013946.01.T01:CDS |
| AATAGATCTTTCAAAGAACA+AGG | 0.632821 | 3:+48489753 | MsG0380013946.01.T01:CDS |
| TCATCAAATAGAAATTCCCA+AGG | 0.640259 | 3:-48489585 | None:intergenic |
| GTTCTTGGAGGATGGAACCA+TGG | 0.662640 | 3:+48489716 | MsG0380013946.01.T01:CDS |
| CCAATTCATTTGGGACCCCG+CGG | 0.662894 | 3:+48489791 | MsG0380013946.01.T01:CDS |
| GAAGAAGAAATCATGTAACG+TGG | 0.668764 | 3:+48489113 | MsG0380013946.01.T01:CDS |
| AAACGGACTTCCTGTCTGTG+AGG | 0.680047 | 3:-48489361 | None:intergenic |
| GAAGAAATCATGTAACGTGG+GGG | 0.684006 | 3:+48489116 | MsG0380013946.01.T01:CDS |
| CATCAAATAGAAATTCCCAA+GGG | 0.721804 | 3:-48489584 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCCAATAAATTTTTTTTGTT+TGG | - | Chr3:48489917-48489936 | None:intergenic | 15.0% |
| !! | ATTTATTCAATCACATAGTT+TGG | + | Chr3:48489544-48489563 | MsG0380013946.01.T01:CDS | 20.0% |
| !! | GCCAAACAAAAAAAATTTAT+TGG | + | Chr3:48489913-48489932 | MsG0380013946.01.T01:CDS | 20.0% |
| !! | TCTCTATGAAAAATATGAAT+CGG | + | Chr3:48489479-48489498 | MsG0380013946.01.T01:CDS | 20.0% |
| !! | TTTATTCAATCACATAGTTT+GGG | + | Chr3:48489545-48489564 | MsG0380013946.01.T01:CDS | 20.0% |
| !!! | CCATTTTGAATCATATTTAT+GGG | - | Chr3:48489432-48489451 | None:intergenic | 20.0% |
| !!! | TCCATTTTGAATCATATTTA+TGG | - | Chr3:48489433-48489452 | None:intergenic | 20.0% |
| !!! | TGATAAATATTGATAACTCT+CGG | - | Chr3:48490069-48490088 | None:intergenic | 20.0% |
| !!! | TTCATTTGATAATGAACTAT+TGG | - | Chr3:48490024-48490043 | None:intergenic | 20.0% |
| ! | AATAGATCTTTCAAAGAACA+AGG | + | Chr3:48489753-48489772 | MsG0380013946.01.T01:CDS | 25.0% |
| ! | CCCATAAATATGATTCAAAA+TGG | + | Chr3:48489429-48489448 | MsG0380013946.01.T01:CDS | 25.0% |
| ! | CTAGATCAGAATCATTATAA+AGG | - | Chr3:48489302-48489321 | None:intergenic | 25.0% |
| ! | CTCTATGAAAAATATGAATC+GGG | + | Chr3:48489480-48489499 | MsG0380013946.01.T01:CDS | 25.0% |
| ! | GACCTAATGAAAAAAATGAT+GGG | + | Chr3:48489259-48489278 | MsG0380013946.01.T01:CDS | 25.0% |
| ! | TCTATGAAAAATATGAATCG+GGG | + | Chr3:48489481-48489500 | MsG0380013946.01.T01:CDS | 25.0% |
| ! | TTAAACCAATCATTCGTTAT+TGG | - | Chr3:48490191-48490210 | None:intergenic | 25.0% |
| !!! | ATCATTTTTTTCATTAGGTC+CGG | - | Chr3:48489259-48489278 | None:intergenic | 25.0% |
| !!! | ATCCCATCATTTTTTTCATT+AGG | - | Chr3:48489264-48489283 | None:intergenic | 25.0% |
| AACAATTCGAAATTCTGTTC+TGG | - | Chr3:48489975-48489994 | None:intergenic | 30.0% | |
| AAGAAGAAATCATGTAACGT+GGG | + | Chr3:48489114-48489133 | MsG0380013946.01.T01:CDS | 30.0% | |
| AAGACATTGTTGAGAAAAGA+TGG | + | Chr3:48490131-48490150 | MsG0380013946.01.T01:CDS | 30.0% | |
| ATCATATTTATGGGATTCCT+TGG | - | Chr3:48489423-48489442 | None:intergenic | 30.0% | |
| ATGGAGTAACATTTCTTCTT+AGG | + | Chr3:48489391-48489410 | MsG0380013946.01.T01:CDS | 30.0% | |
| CAGATCATTTATGATGAAGA+GGG | + | Chr3:48489669-48489688 | MsG0380013946.01.T01:CDS | 30.0% | |
| CATAGAGAAATCTATGATCA+AGG | - | Chr3:48489467-48489486 | None:intergenic | 30.0% | |
| CATCAAATAGAAATTCCCAA+GGG | - | Chr3:48489587-48489606 | None:intergenic | 30.0% | |
| CTTTGTAATTTGAGCCAATA+GGG | - | Chr3:48490114-48490133 | None:intergenic | 30.0% | |
| GGAAATATCTAAATAAACGC+TGG | + | Chr3:48489934-48489953 | MsG0380013946.01.T01:CDS | 30.0% | |
| GGACCTAATGAAAAAAATGA+TGG | + | Chr3:48489258-48489277 | MsG0380013946.01.T01:CDS | 30.0% | |
| GTTACTCCATCATTATCAAA+CGG | - | Chr3:48489381-48489400 | None:intergenic | 30.0% | |
| TCAAATCTGTTCCTATCTAA+TGG | + | Chr3:48490086-48490105 | MsG0380013946.01.T01:CDS | 30.0% | |
| TCATCAAATAGAAATTCCCA+AGG | - | Chr3:48489588-48489607 | None:intergenic | 30.0% | |
| TCGAATAAGCCAATTCATTT+GGG | + | Chr3:48489782-48489801 | MsG0380013946.01.T01:CDS | 30.0% | |
| TCTTTGTAATTTGAGCCAAT+AGG | - | Chr3:48490115-48490134 | None:intergenic | 30.0% | |
| TGAGCTTAAAGAGAATGATT+CGG | + | Chr3:48489692-48489711 | MsG0380013946.01.T01:CDS | 30.0% | |
| TGTGAAAACACAGATACAAA+AGG | - | Chr3:48489846-48489865 | None:intergenic | 30.0% | |
| TTCGAATAAGCCAATTCATT+TGG | + | Chr3:48489781-48489800 | MsG0380013946.01.T01:CDS | 30.0% | |
| ! | AATGATTCTGATCTAGTTCA+TGG | + | Chr3:48489306-48489325 | MsG0380013946.01.T01:CDS | 30.0% |
| ! | GGGAATTTCTATTTGATGAT+TGG | + | Chr3:48489589-48489608 | MsG0380013946.01.T01:CDS | 30.0% |
| ! | TATTTGATGATTGGATCGAA+AGG | + | Chr3:48489598-48489617 | MsG0380013946.01.T01:CDS | 30.0% |
| ! | TGAAAGATCTATTTTGTGTC+TGG | - | Chr3:48489746-48489765 | None:intergenic | 30.0% |
| ! | TGATTTGTACAAATGGTACT+TGG | + | Chr3:48489143-48489162 | MsG0380013946.01.T01:CDS | 30.0% |
| !! | ATCTAAATAAACGCTGGTTT+AGG | + | Chr3:48489940-48489959 | MsG0380013946.01.T01:CDS | 30.0% |
| AGAAGAAATCATGTAACGTG+GGG | + | Chr3:48489115-48489134 | MsG0380013946.01.T01:CDS | 35.0% | |
| ATAGGGAAATCCGAATTCAT+TGG | - | Chr3:48489625-48489644 | None:intergenic | 35.0% | |
| ATCGAAAGGTCCAATGAATT+CGG | + | Chr3:48489612-48489631 | MsG0380013946.01.T01:CDS | 35.0% | |
| ATGAATTCGGATTTCCCTAT+TGG | + | Chr3:48489625-48489644 | MsG0380013946.01.T01:CDS | 35.0% | |
| ATTTATGGGATTCCTTGGTT+CGG | - | Chr3:48489418-48489437 | None:intergenic | 35.0% | |
| CAAAATGACCTTTCCCAATA+GGG | - | Chr3:48489642-48489661 | None:intergenic | 35.0% | |
| CAGATACAAAAGGATCATCT+TGG | - | Chr3:48489836-48489855 | None:intergenic | 35.0% | |
| CTGTTCCAATAACGAATGAT+TGG | + | Chr3:48490183-48490202 | MsG0380013946.01.T01:CDS | 35.0% | |
| GAAGAAGAAATCATGTAACG+TGG | + | Chr3:48489113-48489132 | MsG0380013946.01.T01:CDS | 35.0% | |
| GCAGATCATTTATGATGAAG+AGG | + | Chr3:48489668-48489687 | MsG0380013946.01.T01:CDS | 35.0% | |
| TACAAATGGTACTTGGAACT+TGG | + | Chr3:48489150-48489169 | MsG0380013946.01.T01:CDS | 35.0% | |
| TCTTGGAATAGCAAAAAGAG+TGG | - | Chr3:48489819-48489838 | None:intergenic | 35.0% | |
| TGAATTCGGATTTCCCTATT+GGG | + | Chr3:48489626-48489645 | MsG0380013946.01.T01:CDS | 35.0% | |
| TTGAATAAATCCTCCTCTAG+CGG | - | Chr3:48489534-48489553 | None:intergenic | 35.0% | |
| ! | GGGATTCTGATTTGTACAAA+TGG | + | Chr3:48489136-48489155 | MsG0380013946.01.T01:CDS | 35.0% |
| !! | CTATTGGGAAAGGTCATTTT+GGG | + | Chr3:48489641-48489660 | MsG0380013946.01.T01:CDS | 35.0% |
| !!! | TATCTTTTGAGTTGTTCTGC+CGG | + | Chr3:48489204-48489223 | MsG0380013946.01.T01:CDS | 35.0% |
| ATAGTAACAACCATCTCCTC+CGG | - | Chr3:48490163-48490182 | None:intergenic | 40.0% | |
| CAAAACCTTTGGTCTCTAAC+CGG | + | Chr3:48489237-48489256 | MsG0380013946.01.T01:CDS | 40.0% | |
| CATGGCCTATTAGAAGTAGA+AGG | + | Chr3:48489324-48489343 | MsG0380013946.01.T01:CDS | 40.0% | |
| CCAAAATGACCTTTCCCAAT+AGG | - | Chr3:48489643-48489662 | None:intergenic | 40.0% | |
| CCAATAGGGTTCCATTAGAT+AGG | - | Chr3:48490100-48490119 | None:intergenic | 40.0% | |
| CCTATCTAATGGAACCCTAT+TGG | + | Chr3:48490097-48490116 | MsG0380013946.01.T01:CDS | 40.0% | |
| GAAGAAATCATGTAACGTGG+GGG | + | Chr3:48489116-48489135 | MsG0380013946.01.T01:CDS | 40.0% | |
| GAGCACCTTCTACTTCTAAT+AGG | - | Chr3:48489332-48489351 | None:intergenic | 40.0% | |
| TAGTTTGGGCTCCTAGAATA+TGG | + | Chr3:48489559-48489578 | MsG0380013946.01.T01:CDS | 40.0% | |
| TCGAGAATTGCTTACAGATG+AGG | + | Chr3:48489866-48489885 | MsG0380013946.01.T01:CDS | 40.0% | |
| TGAATAAATCCTCCTCTAGC+GGG | - | Chr3:48489533-48489552 | None:intergenic | 40.0% | |
| TTTATGGGATTCCTTGGTTC+GGG | - | Chr3:48489417-48489436 | None:intergenic | 40.0% | |
| ! | AGAGAATGATTCGGAGTTCT+TGG | + | Chr3:48489701-48489720 | MsG0380013946.01.T01:CDS | 40.0% |
| ! | ATTTTGTGTCTGGTACTCCA+TGG | - | Chr3:48489736-48489755 | None:intergenic | 40.0% |
| ! | CCTATTGGGAAAGGTCATTT+TGG | + | Chr3:48489640-48489659 | MsG0380013946.01.T01:CDS | 40.0% |
| ! | TGAGAAAAGATGGCTTTTCC+CGG | + | Chr3:48490141-48490160 | MsG0380013946.01.T01:CDS | 40.0% |
| !! | GGAAGTCCGTTTGATAATGA+TGG | + | Chr3:48489372-48489391 | MsG0380013946.01.T01:CDS | 40.0% |
| !!! | AGACCAAAGGTTTTGAGCAA+CGG | - | Chr3:48489232-48489251 | None:intergenic | 40.0% |
| ATGAATCGGGGTTCGAAGAA+GGG | + | Chr3:48489493-48489512 | MsG0380013946.01.T01:CDS | 45.0% | |
| GATCCGTTGCTCAAAACCTT+TGG | + | Chr3:48489226-48489245 | MsG0380013946.01.T01:CDS | 45.0% | |
| TAGCAAAAAGAGTGGATCCG+CGG | - | Chr3:48489811-48489830 | None:intergenic | 45.0% | |
| TAGTAACAACCATCTCCTCC+GGG | - | Chr3:48490162-48490181 | None:intergenic | 45.0% | |
| TATGAATCGGGGTTCGAAGA+AGG | + | Chr3:48489492-48489511 | MsG0380013946.01.T01:CDS | 45.0% | |
| TCGGATTTCCCTATTGGGAA+AGG | + | Chr3:48489631-48489650 | MsG0380013946.01.T01:CDS | 45.0% | |
| ! | GAATGATTCGGAGTTCTTGG+AGG | + | Chr3:48489704-48489723 | MsG0380013946.01.T01:CDS | 45.0% |
| !!! | AAGGTTTTGAGCAACGGATC+CGG | - | Chr3:48489226-48489245 | None:intergenic | 45.0% |
| AGCAAAAAGAGTGGATCCGC+GGG | - | Chr3:48489810-48489829 | None:intergenic | 50.0% | |
| GATTCGGAGTTCTTGGAGGA+TGG | + | Chr3:48489708-48489727 | MsG0380013946.01.T01:CDS | 50.0% | |
| GTTCTTGGAGGATGGAACCA+TGG | + | Chr3:48489716-48489735 | MsG0380013946.01.T01:CDS | 50.0% | |
| TAGGTCCGGTTAGAGACCAA+AGG | - | Chr3:48489245-48489264 | None:intergenic | 50.0% | |
| TCCTAGAATATGGCGCCCTT+GGG | + | Chr3:48489569-48489588 | MsG0380013946.01.T01:CDS | 50.0% | |
| TGAATCGGGGTTCGAAGAAG+GGG | + | Chr3:48489494-48489513 | MsG0380013946.01.T01:CDS | 50.0% | |
| TTCTTCTTAGGCCCGAACCA+AGG | + | Chr3:48489403-48489422 | MsG0380013946.01.T01:CDS | 50.0% | |
| ! | AAACGGACTTCCTGTCTGTG+AGG | - | Chr3:48489364-48489383 | None:intergenic | 50.0% |
| ! | GAAAAGATGGCTTTTCCCGG+AGG | + | Chr3:48490144-48490163 | MsG0380013946.01.T01:CDS | 50.0% |
| ! | TAAATCCTCCTCTAGCGGGT+CGG | - | Chr3:48489529-48489548 | None:intergenic | 50.0% |
| !! | AGAAGTAGAAGGTGCTCTGC+TGG | + | Chr3:48489335-48489354 | MsG0380013946.01.T01:CDS | 50.0% |
| !! | GAAGTAGAAGGTGCTCTGCT+GGG | + | Chr3:48489336-48489355 | MsG0380013946.01.T01:CDS | 50.0% |
| CTCCTAGAATATGGCGCCCT+TGG | + | Chr3:48489568-48489587 | MsG0380013946.01.T01:CDS | 55.0% | |
| GCAAAAAGAGTGGATCCGCG+GGG | - | Chr3:48489809-48489828 | None:intergenic | 55.0% | |
| ! | AAATCCTCCTCTAGCGGGTC+GGG | - | Chr3:48489528-48489547 | None:intergenic | 55.0% |
| ! | ATGGCTTTTCCCGGAGGAGA+TGG | + | Chr3:48490150-48490169 | MsG0380013946.01.T01:CDS | 55.0% |
| ! | CCAATTCATTTGGGACCCCG+CGG | + | Chr3:48489791-48489810 | MsG0380013946.01.T01:CDS | 55.0% |
| !! | TCCCAAGGGCGCCATATTCT+AGG | - | Chr3:48489573-48489592 | None:intergenic | 55.0% |
| CCGCGGGGTCCCAAATGAAT+TGG | - | Chr3:48489794-48489813 | None:intergenic | 60.0% | |
| CTGCTGGGATCCTCACAGAC+AGG | + | Chr3:48489351-48489370 | MsG0380013946.01.T01:CDS | 60.0% | |
| GGGTTCGAAGAAGGGGAAGG+AGG | + | Chr3:48489501-48489520 | MsG0380013946.01.T01:CDS | 60.0% | |
| TCGGGGTTCGAAGAAGGGGA+AGG | + | Chr3:48489498-48489517 | MsG0380013946.01.T01:CDS | 60.0% | |
| ! | AATCCTCCTCTAGCGGGTCG+GGG | - | Chr3:48489527-48489546 | None:intergenic | 60.0% |
| AGGAGGCCCCGACCCGCTAG+AGG | + | Chr3:48489518-48489537 | MsG0380013946.01.T01:CDS | 75.0% | |
| AGGCCCCGACCCGCTAGAGG+AGG | + | Chr3:48489521-48489540 | MsG0380013946.01.T01:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 48489111 | 48490214 | 48489111 | ID=MsG0380013946.01;Name=MsG0380013946.01 |
| Chr3 | mRNA | 48489111 | 48490214 | 48489111 | ID=MsG0380013946.01.T01;Parent=MsG0380013946.01;Name=MsG0380013946.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|367 |
| Chr3 | exon | 48489111 | 48490214 | 48489111 | ID=MsG0380013946.01.T01:exon:8509;Parent=MsG0380013946.01.T01 |
| Chr3 | CDS | 48489111 | 48490214 | 48489111 | ID=MsG0380013946.01.T01:cds;Parent=MsG0380013946.01.T01 |
| Gene Sequence |
| Protein sequence |
