AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280009518.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009518.01.T01 MTR_2g064370 94.757 267 11 1 1 264 1 267 2.96e-179 494
MsG0280009518.01.T01 MTR_8g046460 72.441 254 64 3 14 264 18 268 1.85e-134 380
MsG0280009518.01.T01 MTR_8g028425 57.792 154 63 1 75 226 92 245 1.17e-64 202
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009518.01.T01 AT1G79510 65.704 277 80 8 1 264 1 275 2.42e-120 345
MsG0280009518.01.T01 AT1G79510 65.704 277 80 8 1 264 1 275 2.42e-120 345
MsG0280009518.01.T01 AT1G16320 59.854 274 99 6 1 264 1 273 3.31e-111 322
MsG0280009518.01.T01 AT2G46220 55.414 157 68 1 72 226 81 237 5.74e-65 203

Find 80 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTACAACTTAAAATTTC+TGG 0.110838 2:+53492535 None:intergenic
AAAAGTACAAATTGATCTTC+TGG 0.216595 2:-53492994 MsG0280009518.01.T01:CDS
GACCCTTTGAACACATTTAC+TGG 0.221962 2:-53493022 MsG0280009518.01.T01:CDS
AGGCACTTCAAAGTATAAAT+TGG 0.231544 2:-53492825 MsG0280009518.01.T01:CDS
AAAACCATTGAAGCATTAAA+AGG 0.244066 2:-53493862 MsG0280009518.01.T01:five_prime_UTR
TATTAAACCAGTTTCAGTTT+TGG 0.296641 2:-53492741 MsG0280009518.01.T01:CDS
ATTGAAGCATTAAAAGGTTA+TGG 0.297451 2:-53493856 MsG0280009518.01.T01:exon
TTATAAGAGTGTATATAAAT+AGG 0.322094 2:-53492300 MsG0280009518.01.T01:three_prime_UTR
TTCATGGATAACTTTATATA+AGG 0.327641 2:-53492648 MsG0280009518.01.T01:CDS
TTCTGGGCATTGAGGTTTCA+TGG 0.332313 2:-53492977 MsG0280009518.01.T01:CDS
TAACTTTATATAAGGCAGTT+AGG 0.342291 2:-53492640 MsG0280009518.01.T01:CDS
TGTATAGAATCAAGCTTAAT+AGG 0.349089 2:-53492370 MsG0280009518.01.T01:three_prime_UTR
AGGGCGTGCCGCGTGTCCCT+TGG 0.359335 2:-53492868 MsG0280009518.01.T01:CDS
TTGGTGAAGAGGTTTGTCTT+TGG 0.362955 2:+53493785 None:intergenic
GAGTTGGGAGATAAGGTTGT+AGG 0.369415 2:+53493817 None:intergenic
AGAAAATGTGAAGTGGGTTT+TGG 0.372710 2:+53493750 None:intergenic
ACAAAATCCAAAACTGAAAC+TGG 0.373146 2:+53492734 None:intergenic
GGGAGATAAGGTTGTAGGTT+TGG 0.374951 2:+53493822 None:intergenic
ATCCATATCACATTCTTTGA+AGG 0.378380 2:+53492905 None:intergenic
GGGCGTGCCGCGTGTCCCTT+GGG 0.391041 2:-53492867 MsG0280009518.01.T01:CDS
AACCTTCAAAGAATGTGATA+TGG 0.392294 2:-53492907 MsG0280009518.01.T01:CDS
TTTGATTGAGTTGGGAGATA+AGG 0.392649 2:+53493810 None:intergenic
CAAAGAATGTGATATGGATT+AGG 0.401184 2:-53492901 MsG0280009518.01.T01:CDS
ATGGATTAGGTGGAACCTTA+AGG 0.407766 2:-53492888 MsG0280009518.01.T01:CDS
AAAGTACAAATTGATCTTCT+GGG 0.411012 2:-53492993 MsG0280009518.01.T01:CDS
TGGATGTCTACTCTTCTTCA+TGG 0.415651 2:-53492664 MsG0280009518.01.T01:CDS
ACTCGTATATATAAAGTTGT+AGG 0.417731 2:-53492508 MsG0280009518.01.T01:three_prime_UTR
GGACACGCGGCACGCCCTTA+AGG 0.419205 2:+53492873 None:intergenic
TGTTTATCTTGAACACTTGA+TGG 0.420634 2:+53493654 None:intergenic
AATGTAGGGTTTGGACTAGC+AGG 0.427331 2:+53492701 None:intergenic
TTTACATAGAATTCATCCTT+TGG 0.428640 2:+53493627 None:intergenic
AACTTTATATAAGGCAGTTA+GGG 0.433549 2:-53492639 MsG0280009518.01.T01:CDS
AGGTCTTTGATGAAGATCAT+AGG 0.436047 2:+53493567 None:intergenic
GAAGTTGCTCATTCTGTTGT+TGG 0.439021 2:-53492259 MsG0280009518.01.T01:three_prime_UTR
TGAACATAAAGTTGATAACT+TGG 0.441163 2:-53492783 MsG0280009518.01.T01:CDS
TTTGATTCTTCTTCTCCCTT+AGG 0.456018 2:-53493711 MsG0280009518.01.T01:CDS
ATTCCAGTAAATGTGTTCAA+AGG 0.467787 2:+53493019 None:intergenic
TGGATTAGGTGGAACCTTAA+GGG 0.470608 2:-53492887 MsG0280009518.01.T01:CDS
TTCCAGTAAATGTGTTCAAA+GGG 0.481927 2:+53493020 None:intergenic
ACCTCAATTATGATATCTAT+AGG 0.485916 2:-53493548 MsG0280009518.01.T01:intron
AGGGAGACTTTGAAACAAGA+AGG 0.486403 2:-53492620 MsG0280009518.01.T01:CDS
CATAGAATTCATCCTTTGGA+AGG 0.493982 2:+53493631 None:intergenic
AGAAGAAGAATCAAATGAAG+TGG 0.495466 2:+53493719 None:intergenic
TTATATATATTGTTATACAT+TGG 0.498168 2:+53492436 None:intergenic
GGTGTGTTAACTTGTGAAGT+TGG 0.498670 2:+53493675 None:intergenic
GGTCAGATATAATGAATTTG+TGG 0.498813 2:-53492349 MsG0280009518.01.T01:three_prime_UTR
TGGAGTTTGAAGGTTGCCTA+AGG 0.503173 2:+53493695 None:intergenic
AATTGATCTTCTGGGCATTG+AGG 0.508643 2:-53492985 MsG0280009518.01.T01:CDS
GAAGCTAAAGGAGAATTTCA+AGG 0.512138 2:-53492845 MsG0280009518.01.T01:CDS
AAGTATAAATTGGACAAGAA+TGG 0.514460 2:-53492815 MsG0280009518.01.T01:CDS
ATTTGTGGCATAGCATGAAA+TGG 0.514904 2:-53492334 MsG0280009518.01.T01:three_prime_UTR
GATACAAGAAAATGTGAAGT+GGG 0.517635 2:+53493744 None:intergenic
GATGAATTCTATGTAAACCT+TGG 0.522285 2:-53493621 MsG0280009518.01.T01:CDS
AATATTGAGTTTCTCGATGT+CGG 0.527023 2:-53492410 MsG0280009518.01.T01:three_prime_UTR
ACCTATAGATATCATAATTG+AGG 0.529058 2:+53493547 None:intergenic
CGTGTCCCTTGGGAAGCTAA+AGG 0.549445 2:-53492857 MsG0280009518.01.T01:CDS
AATTCTCCTTTAGCTTCCCA+AGG 0.554730 2:+53492851 None:intergenic
TCATATCAATCATCAAACAT+AGG 0.555067 2:+53492222 None:intergenic
CTTGTGAAGTTGGAGTTTGA+AGG 0.555695 2:+53493685 None:intergenic
GAGTTCTCACAGCAAGTCCA+AGG 0.562493 2:+53493604 None:intergenic
ATAGATAATACTTACGAGCA+TGG 0.565339 2:+53492569 None:intergenic
AGAATGTGATATGGATTAGG+TGG 0.569695 2:-53492898 MsG0280009518.01.T01:CDS
GTTTCTCGATGTCGGCTAAG+TGG 0.570441 2:-53492402 MsG0280009518.01.T01:three_prime_UTR
GTTGCTCATTCTGTTGTTGG+AGG 0.574208 2:-53492256 MsG0280009518.01.T01:three_prime_UTR
AGCTTGATTCTATACACGGT+CGG 0.576831 2:+53492377 None:intergenic
GAAGAAGAGTAGACATCCAC+AGG 0.583593 2:+53492668 None:intergenic
AGATACAAGAAAATGTGAAG+TGG 0.591521 2:+53493743 None:intergenic
ATGTACAGTTTAGTACATGT+TGG 0.594159 2:-53492464 MsG0280009518.01.T01:three_prime_UTR
GGAGTTTGAAGGTTGCCTAA+GGG 0.594338 2:+53493696 None:intergenic
GGGAGACTTTGAAACAAGAA+GGG 0.595464 2:-53492619 MsG0280009518.01.T01:CDS
GATGAAAGAGTTTGGTGAAG+AGG 0.606204 2:+53493774 None:intergenic
AGAGTGTATATAAATAGGCA+AGG 0.608791 2:-53492295 MsG0280009518.01.T01:three_prime_UTR
GGGAGTTTGCTACCACAAGA+TGG 0.611323 2:-53492599 MsG0280009518.01.T01:CDS
ATTCTCCTTTAGCTTCCCAA+GGG 0.617667 2:+53492852 None:intergenic
ATGTAGGGTTTGGACTAGCA+GGG 0.639151 2:+53492702 None:intergenic
ATTAAGCTTGATTCTATACA+CGG 0.641949 2:+53492373 None:intergenic
TTAGCTTCCCAAGGGACACG+CGG 0.642123 2:+53492860 None:intergenic
CACTTGATGTATATAGAGTG+TGG 0.642892 2:-53492931 MsG0280009518.01.T01:CDS
TCAAGATAAACACCTTCCAA+AGG 0.652143 2:-53493643 MsG0280009518.01.T01:CDS
CATGGAGCTAGACCATCTTG+TGG 0.685164 2:+53492587 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATATATTGTTATACAT+TGG + Chr2:53493620-53493639 None:intergenic 10.0%
!! AAAAAGAAAGTTATAAGAAA+TGG + Chr2:53492559-53492578 None:intergenic 15.0%
!! CTTATAAATAGTGTTAAATA+GGG + Chr2:53492623-53492642 None:intergenic 15.0%
!!! TTATAAGAGTGTATATAAAT+AGG - Chr2:53493753-53493772 MsG0280009518.01.T01:CDS 15.0%
!! GCTTATAAATAGTGTTAAAT+AGG + Chr2:53492624-53492643 None:intergenic 20.0%
!! TTCATGGATAACTTTATATA+AGG - Chr2:53493405-53493424 MsG0280009518.01.T01:intron 20.0%
!!! GAAACTGGTTTAATATTTTT+GGG + Chr2:53493307-53493326 None:intergenic 20.0%
!!! TAGATTTTCTTTGACTTTTA+TGG - Chr2:53493902-53493921 MsG0280009518.01.T01:five_prime_UTR 20.0%
!!! TGAAACTGGTTTAATATTTT+TGG + Chr2:53493308-53493327 None:intergenic 20.0%
!!! TTATTAGGTTGTGAATTTTA+AGG - Chr2:53492955-53492974 MsG0280009518.01.T01:CDS 20.0%
! AAAGTACAAATTGATCTTCT+GGG - Chr2:53493060-53493079 MsG0280009518.01.T01:intron 25.0%
! AACTTTATATAAGGCAGTTA+GGG - Chr2:53493414-53493433 MsG0280009518.01.T01:intron 25.0%
! AAGTATAAATTGGACAAGAA+TGG - Chr2:53493238-53493257 MsG0280009518.01.T01:intron 25.0%
! ACCTATAGATATCATAATTG+AGG + Chr2:53492509-53492528 None:intergenic 25.0%
! ACCTCAATTATGATATCTAT+AGG - Chr2:53492505-53492524 MsG0280009518.01.T01:three_prime_UTR 25.0%
! ACTCGTATATATAAAGTTGT+AGG - Chr2:53493545-53493564 MsG0280009518.01.T01:intron 25.0%
! ATTAAGCTTGATTCTATACA+CGG + Chr2:53493683-53493702 None:intergenic 25.0%
! GTACACATTAAGTGTTAAAT+AGG + Chr2:53492646-53492665 None:intergenic 25.0%
! GTTTGTAAAATGAGCTTATT+AGG - Chr2:53492940-53492959 MsG0280009518.01.T01:CDS 25.0%
! TAACTTTATATAAGGCAGTT+AGG - Chr2:53493413-53493432 MsG0280009518.01.T01:intron 25.0%
! TCATATCAATCATCAAACAT+AGG + Chr2:53493834-53493853 None:intergenic 25.0%
! TGTATAGAATCAAGCTTAAT+AGG - Chr2:53493683-53493702 MsG0280009518.01.T01:CDS 25.0%
! TTATAAGAAATGGTCAAATG+AGG + Chr2:53492549-53492568 None:intergenic 25.0%
! TTTACATAGAATTCATCCTT+TGG + Chr2:53492429-53492448 None:intergenic 25.0%
!! AAAACCATTGAAGCATTAAA+AGG - Chr2:53492191-53492210 MsG0280009518.01.T01:three_prime_UTR 25.0%
!! AAAAGTACAAATTGATCTTC+TGG - Chr2:53493059-53493078 MsG0280009518.01.T01:intron 25.0%
!! ATAACCTTTTAATGCTTCAA+TGG + Chr2:53492198-53492217 None:intergenic 25.0%
!! ATTGAAGCATTAAAAGGTTA+TGG - Chr2:53492197-53492216 MsG0280009518.01.T01:three_prime_UTR 25.0%
!! CAGAGATGATATAACATTTT+TGG - Chr2:53493009-53493028 MsG0280009518.01.T01:CDS 25.0%
!! TATTAAACCAGTTTCAGTTT+TGG - Chr2:53493312-53493331 MsG0280009518.01.T01:intron 25.0%
!!! TGAACATAAAGTTGATAACT+TGG - Chr2:53493270-53493289 MsG0280009518.01.T01:intron 25.0%
AACCTTCAAAGAATGTGATA+TGG - Chr2:53493146-53493165 MsG0280009518.01.T01:intron 30.0%
AAGCATCAAAAAACTTGTCA+TGG + Chr2:53492738-53492757 None:intergenic 30.0%
AATATTGAGTTTCTCGATGT+CGG - Chr2:53493643-53493662 MsG0280009518.01.T01:CDS 30.0%
ACAAAATCCAAAACTGAAAC+TGG + Chr2:53493322-53493341 None:intergenic 30.0%
AGAAGAAGAATCAAATGAAG+TGG + Chr2:53492337-53492356 None:intergenic 30.0%
AGAGTGTATATAAATAGGCA+AGG - Chr2:53493758-53493777 MsG0280009518.01.T01:CDS 30.0%
AGATACAAGAAAATGTGAAG+TGG + Chr2:53492313-53492332 None:intergenic 30.0%
AGGCACTTCAAAGTATAAAT+TGG - Chr2:53493228-53493247 MsG0280009518.01.T01:intron 30.0%
ATAGATAATACTTACGAGCA+TGG + Chr2:53493487-53493506 None:intergenic 30.0%
ATCCATATCACATTCTTTGA+AGG + Chr2:53493151-53493170 None:intergenic 30.0%
ATGTACAGTTTAGTACATGT+TGG - Chr2:53493589-53493608 MsG0280009518.01.T01:CDS 30.0%
ATTCCAGTAAATGTGTTCAA+AGG + Chr2:53493037-53493056 None:intergenic 30.0%
CAAAGAATGTGATATGGATT+AGG - Chr2:53493152-53493171 MsG0280009518.01.T01:intron 30.0%
CCTCTACAACTTAAAATTTC+TGG + Chr2:53493521-53493540 None:intergenic 30.0%
GATACAAGAAAATGTGAAGT+GGG + Chr2:53492312-53492331 None:intergenic 30.0%
GATGAATTCTATGTAAACCT+TGG - Chr2:53492432-53492451 MsG0280009518.01.T01:three_prime_UTR 30.0%
GGTCAGATATAATGAATTTG+TGG - Chr2:53493704-53493723 MsG0280009518.01.T01:CDS 30.0%
TGTTTATCTTGAACACTTGA+TGG + Chr2:53492402-53492421 None:intergenic 30.0%
TTCCAGTAAATGTGTTCAAA+GGG + Chr2:53493036-53493055 None:intergenic 30.0%
!!! CCAGAAATTTTAAGTTGTAG+AGG - Chr2:53493518-53493537 MsG0280009518.01.T01:intron 30.0%
!!! CTTTGGATTTTGATTGAGTT+GGG + Chr2:53492254-53492273 None:intergenic 30.0%
!!! TCTTTGGATTTTGATTGAGT+TGG + Chr2:53492255-53492274 None:intergenic 30.0%
!!! TGACAAGTTTTTTGATGCTT+AGG - Chr2:53492738-53492757 MsG0280009518.01.T01:CDS 30.0%
AGGTCTTTGATGAAGATCAT+AGG + Chr2:53492489-53492508 None:intergenic 35.0%
ATTTGTGGCATAGCATGAAA+TGG - Chr2:53493719-53493738 MsG0280009518.01.T01:CDS 35.0%
CACTTGATGTATATAGAGTG+TGG - Chr2:53493122-53493141 MsG0280009518.01.T01:intron 35.0%
CATAGAATTCATCCTTTGGA+AGG + Chr2:53492425-53492444 None:intergenic 35.0%
GAAGCTAAAGGAGAATTTCA+AGG - Chr2:53493208-53493227 MsG0280009518.01.T01:intron 35.0%
TCAAGATAAACACCTTCCAA+AGG - Chr2:53492410-53492429 MsG0280009518.01.T01:three_prime_UTR 35.0%
TTTGATTCTTCTTCTCCCTT+AGG - Chr2:53492342-53492361 MsG0280009518.01.T01:three_prime_UTR 35.0%
! TCCAAACCCTACATTTTTGT+GGG - Chr2:53493360-53493379 MsG0280009518.01.T01:intron 35.0%
!! AGAAAATGTGAAGTGGGTTT+TGG + Chr2:53492306-53492325 None:intergenic 35.0%
!! AGAATGTGATATGGATTAGG+TGG - Chr2:53493155-53493174 MsG0280009518.01.T01:intron 35.0%
!! TTTGATTGAGTTGGGAGATA+AGG + Chr2:53492246-53492265 None:intergenic 35.0%
!!! GTTTTGGTGATGAAAGAGTT+TGG + Chr2:53492290-53492309 None:intergenic 35.0%
AGCTTGATTCTATACACGGT+CGG + Chr2:53493679-53493698 None:intergenic 40.0%
CTTGTGAAGTTGGAGTTTGA+AGG + Chr2:53492371-53492390 None:intergenic 40.0%
GAAGTTGCTCATTCTGTTGT+TGG - Chr2:53493794-53493813 MsG0280009518.01.T01:CDS 40.0%
GACCCTTTGAACACATTTAC+TGG - Chr2:53493031-53493050 MsG0280009518.01.T01:CDS 40.0%
TGATGCTTAGGAGTTGAACT+TGG - Chr2:53492750-53492769 MsG0280009518.01.T01:CDS 40.0%
TGGATGTCTACTCTTCTTCA+TGG - Chr2:53493389-53493408 MsG0280009518.01.T01:intron 40.0%
TTGGTGAAGAGGTTTGTCTT+TGG + Chr2:53492271-53492290 None:intergenic 40.0%
! AATTCTCCTTTAGCTTCCCA+AGG + Chr2:53493205-53493224 None:intergenic 40.0%
! AATTGATCTTCTGGGCATTG+AGG - Chr2:53493068-53493087 MsG0280009518.01.T01:intron 40.0%
! ATTCTCCTTTAGCTTCCCAA+GGG + Chr2:53493204-53493223 None:intergenic 40.0%
! CCAAACCCTACATTTTTGTG+GGG - Chr2:53493361-53493380 MsG0280009518.01.T01:intron 40.0%
! GATGAAAGAGTTTGGTGAAG+AGG + Chr2:53492282-53492301 None:intergenic 40.0%
! GTCCAAACCCTACATTTTTG+TGG - Chr2:53493359-53493378 MsG0280009518.01.T01:intron 40.0%
! TGGATTAGGTGGAACCTTAA+GGG - Chr2:53493166-53493185 MsG0280009518.01.T01:intron 40.0%
!! AGGGAGACTTTGAAACAAGA+AGG - Chr2:53493433-53493452 MsG0280009518.01.T01:intron 40.0%
!! ATGGATTAGGTGGAACCTTA+AGG - Chr2:53493165-53493184 MsG0280009518.01.T01:intron 40.0%
!! GGGAGACTTTGAAACAAGAA+GGG - Chr2:53493434-53493453 MsG0280009518.01.T01:intron 40.0%
!! GGTGTGTTAACTTGTGAAGT+TGG + Chr2:53492381-53492400 None:intergenic 40.0%
ACAGGACCCCACAAAAATGT+AGG + Chr2:53493370-53493389 None:intergenic 45.0%
CAGGACCCCACAAAAATGTA+GGG + Chr2:53493369-53493388 None:intergenic 45.0%
CCCCACAAAAATGTAGGGTT+TGG + Chr2:53493364-53493383 None:intergenic 45.0%
CTATTGAAGTCTAGCGCAAG+TGG + Chr2:53492831-53492850 None:intergenic 45.0%
GAAGAAGAGTAGACATCCAC+AGG + Chr2:53493388-53493407 None:intergenic 45.0%
GAGTTGGGAGATAAGGTTGT+AGG + Chr2:53492239-53492258 None:intergenic 45.0%
GGAGTTTGAAGGTTGCCTAA+GGG + Chr2:53492360-53492379 None:intergenic 45.0%
GGGAGATAAGGTTGTAGGTT+TGG + Chr2:53492234-53492253 None:intergenic 45.0%
GTTGCTCATTCTGTTGTTGG+AGG - Chr2:53493797-53493816 MsG0280009518.01.T01:CDS 45.0%
TGGAGTTTGAAGGTTGCCTA+AGG + Chr2:53492361-53492380 None:intergenic 45.0%
! GGTTGGTACATATGGTGTGT+CGG + Chr2:53492810-53492829 None:intergenic 45.0%
! TACATTTTTGTGGGGTCCTG+TGG - Chr2:53493369-53493388 MsG0280009518.01.T01:intron 45.0%
!! AATGTAGGGTTTGGACTAGC+AGG + Chr2:53493355-53493374 None:intergenic 45.0%
!! ATGTAGGGTTTGGACTAGCA+GGG + Chr2:53493354-53493373 None:intergenic 45.0%
!! TTCTGGGCATTGAGGTTTCA+TGG - Chr2:53493076-53493095 MsG0280009518.01.T01:intron 45.0%
CATGGAGCTAGACCATCTTG+TGG + Chr2:53493469-53493488 None:intergenic 50.0%
GAGTTCTCACAGCAAGTCCA+AGG + Chr2:53492452-53492471 None:intergenic 50.0%
TGAAGTCTAGCGCAAGTGGT+TGG + Chr2:53492827-53492846 None:intergenic 50.0%
! GCGCAAGTGGTTGGTACATA+TGG + Chr2:53492818-53492837 None:intergenic 50.0%
! GTTTCTCGATGTCGGCTAAG+TGG - Chr2:53493651-53493670 MsG0280009518.01.T01:CDS 50.0%
!! GGGAGTTTGCTACCACAAGA+TGG - Chr2:53493454-53493473 MsG0280009518.01.T01:intron 50.0%
CGTGTCCCTTGGGAAGCTAA+AGG - Chr2:53493196-53493215 MsG0280009518.01.T01:intron 55.0%
TTAGCTTCCCAAGGGACACG+CGG + Chr2:53493196-53493215 None:intergenic 55.0%
GGACACGCGGCACGCCCTTA+AGG + Chr2:53493183-53493202 None:intergenic 70.0%
AGGGCGTGCCGCGTGTCCCT+TGG - Chr2:53493185-53493204 MsG0280009518.01.T01:intron 75.0%
GGGCGTGCCGCGTGTCCCTT+GGG - Chr2:53493186-53493205 MsG0280009518.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr2 gene 53492145 53493930 53492145 ID=MsG0280009518.01;Name=MsG0280009518.01
Chr2 mRNA 53492145 53493930 53492145 ID=MsG0280009518.01.T01;Parent=MsG0280009518.01;Name=MsG0280009518.01.T01;_AED=0.16;_eAED=0.16;_QI=71|1|1|1|1|1|2|435|264
Chr2 exon 53493549 53493930 53493549 ID=MsG0280009518.01.T01:exon:18521;Parent=MsG0280009518.01.T01
Chr2 exon 53492145 53493063 53492145 ID=MsG0280009518.01.T01:exon:18522;Parent=MsG0280009518.01.T01
Chr2 five_prime_UTR 53493860 53493930 53493860 ID=MsG0280009518.01.T01:five_prime_utr;Parent=MsG0280009518.01.T01
Chr2 CDS 53493549 53493859 53493549 ID=MsG0280009518.01.T01:cds;Parent=MsG0280009518.01.T01
Chr2 CDS 53492580 53493063 53492580 ID=MsG0280009518.01.T01:cds;Parent=MsG0280009518.01.T01
Chr2 three_prime_UTR 53492145 53492579 53492145 ID=MsG0280009518.01.T01:three_prime_utr;Parent=MsG0280009518.01.T01
Gene Sequence

>MsG0280009518.01.T01

ATGGCTTTTCTTCTACCAAACCTACAACCTTATCTCCCAACTCAATCAAAATCCAAAGACAAACCTCTTCACCAAACTCTTTCATCACCAAAACCCACTTCACATTTTCTTGTATCTTCCACTTCATTTGATTCTTCTTCTCCCTTAGGCAACCTTCAAACTCCAACTTCACAAGTTAACACACCATCAAGTGTTCAAGATAAACACCTTCCAAAGGATGAATTCTATGTAAACCTTGGACTTGCTGTGAGAACTCTTCGTGAAGACATGCCTATGATCTTCATCAAAGACCTCAATTATGATATCTATAGAGATGATATAACATTTTTGGACCCTTTGAACACATTTACTGGAATTGAAAAGTACAAATTGATCTTCTGGGCATTGAGGTTTCATGGTAAGCTCTTGTTTCATGAGATAGCACTTGATGTATATAGAGTGTGGCAACCTTCAAAGAATGTGATATGGATTAGGTGGAACCTTAAGGGCGTGCCGCGTGTCCCTTGGGAAGCTAAAGGAGAATTTCAAGGCACTTCAAAGTATAAATTGGACAAGAATGGCAAAATTTATGAACATAAAGTTGATAACTTGGCATTCAATTTTCCCAAAAATATTAAACCAGTTTCAGTTTTGGATTTTGTTACTTCATGCCCTGCTAGTCCAAACCCTACATTTTTGTGGGGTCCTGTGGATGTCTACTCTTCTTCATGGATAACTTTATATAAGGCAGTTAGGGAGACTTTGAAACAAGAAGGGAGTTTGCTACCACAAGATGGTCTAGCTCCATGCTCGTAA

Protein sequence

>MsG0280009518.01.T01

MAFLLPNLQPYLPTQSKSKDKPLHQTLSSPKPTSHFLVSSTSFDSSSPLGNLQTPTSQVNTPSSVQDKHLPKDEFYVNLGLAVRTLREDMPMIFIKDLNYDIYRDDITFLDPLNTFTGIEKYKLIFWALRFHGKLLFHEIALDVYRVWQPSKNVIWIRWNLKGVPRVPWEAKGEFQGTSKYKLDKNGKIYEHKVDNLAFNFPKNIKPVSVLDFVTSCPASPNPTFLWGPVDVYSSSWITLYKAVRETLKQEGSLLPQDGLAPCS*