AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015111.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015111.01.T01 MTR_3g062930 93.925 214 9 2 1 210 1 214 6.82e-136 386
MsG0380015111.01.T01 MTR_3g062920 98.582 141 2 0 222 362 76 216 2.43e-101 298
MsG0380015111.01.T01 MTR_3g095900 44.144 111 62 0 100 210 3 113 2.42e-27 106
MsG0380015111.01.T01 MTR_8g103900 44.144 111 62 0 100 210 3 113 5.77e-27 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015111.01.T01 AT3G54210 69.767 215 56 4 1 210 1 211 3.10e-94 280
MsG0380015111.01.T01 AT5G58250 76.923 143 33 0 217 359 66 208 1.01e-75 233
MsG0380015111.01.T01 AT5G09770 45.946 111 60 0 100 210 3 113 5.05e-28 107
MsG0380015111.01.T01 AT5G64650 45.045 111 61 0 100 210 3 113 1.83e-27 106

Find 127 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCATCCAGATTCATATTT+AGG 0.173330 3:+65372666 None:intergenic
TCTTGATGCGGCCATATTTA+AGG 0.180492 3:+65376554 None:intergenic
GACTTCAAAGATGAGATATT+TGG 0.199811 3:-65372303 MsG0380015111.01.T01:three_prime_UTR
GGAAGTAGGGATTTGGATTT+GGG 0.255031 3:+65377677 None:intergenic
TGGGAAACTTTCTTGCCTTC+TGG 0.255591 3:-65372645 MsG0380015111.01.T01:CDS
GGGAAGTAGGGATTTGGATT+TGG 0.260301 3:+65377676 None:intergenic
TGTCATTGAGCCTAAATTCT+TGG 0.289570 3:-65373662 MsG0380015111.01.T01:CDS
AGCAGGCCTCCGCAGTTTCT+TGG 0.307372 3:+65373621 None:intergenic
TTTGAACGCCGTCGCTACTA+TGG 0.311898 3:-65373715 MsG0380015111.01.T01:CDS
AAGATGGTTCTCTACATAAA+AGG 0.312212 3:-65376471 MsG0380015111.01.T01:CDS
GGAAAACTATCCAAGAATTT+AGG 0.316224 3:+65373652 None:intergenic
GGCGTTCAAATAGTTGTTCT+TGG 0.330758 3:+65373728 None:intergenic
TCCCATTCTGTTTCAGTAAC+CGG 0.331475 3:-65372587 MsG0380015111.01.T01:three_prime_UTR
TTCATCTTCAAGGGTGAAAC+TGG 0.333089 3:-65375725 MsG0380015111.01.T01:intron
TGGATTTGGGTCTGGAAATT+CGG 0.343491 3:+65377690 None:intergenic
AGAAATGGATCTACAAATTC+CGG 0.347964 3:+65372568 None:intergenic
GAAAGAGGGAAGTAGGGATT+TGG 0.355365 3:+65377670 None:intergenic
GTCCTTAGGATCTAAGTTCT+AGG 0.357771 3:-65372438 MsG0380015111.01.T01:three_prime_UTR
TTTCTTTCGCCATAACGTTC+TGG 0.358503 3:+65376388 None:intergenic
ACAACACAGCTCCTTAAATA+TGG 0.358835 3:-65376565 MsG0380015111.01.T01:CDS
ATTTAAGGAGCTGTGTTGTT+AGG 0.359978 3:+65376569 None:intergenic
GGGCAAGAGCCAGTGCAATT+AGG 0.362008 3:-65376525 MsG0380015111.01.T01:CDS
CGTTCGCCATTGTTGCTTGA+AGG 0.364170 3:+65377852 None:intergenic
GTAATAAAGAACAGGATTAC+TGG 0.370944 3:-65373687 MsG0380015111.01.T01:CDS
CCCTATCCTAAATATGAATC+TGG 0.374851 3:-65372672 MsG0380015111.01.T01:CDS
TCAGGAGGCCTGTTGAGTTT+CGG 0.384959 3:+65376616 None:intergenic
CATTATCACCCCGCCTTGGT+AGG 0.385376 3:+65376338 None:intergenic
TAGGGATTTGGATTTGGGTC+TGG 0.392228 3:+65377682 None:intergenic
ATCTATATTTCACTCATTTG+AGG 0.401260 3:+65372402 None:intergenic
CCTGATGGAGGAGCGAAGAT+TGG 0.401689 3:+65377629 None:intergenic
AATTGCACTGGCTCTTGCCC+TGG 0.404316 3:+65376528 None:intergenic
TATAAAGTTTGTGTAAAGGC+TGG 0.408888 3:-65372276 MsG0380015111.01.T01:three_prime_UTR
AATGGCGAACGTGGCAGTTA+TGG 0.410731 3:-65377840 MsG0380015111.01.T01:CDS
CGCAGTTTCTTGGTAAAGTC+AGG 0.410742 3:+65373631 None:intergenic
AAAGTTGAACTGTTGTCCTT+AGG 0.410946 3:-65372452 MsG0380015111.01.T01:three_prime_UTR
TCGACCACCATTGTCAATAA+TGG 0.413683 3:+65376669 None:intergenic
GCTGGTGGTGGTAGAGTTGT+TGG 0.418991 3:+65377808 None:intergenic
TTCTCAAATTCCAGCTTAGT+AGG 0.423773 3:+65372714 None:intergenic
GCAGAGGTTCCAGAACGTTA+TGG 0.426513 3:-65376397 MsG0380015111.01.T01:CDS
CTTGCCTTCTGGACAGAAAG+AGG 0.426855 3:-65372634 MsG0380015111.01.T01:CDS
AAATTCCAGCTTAGTAGGAT+TGG 0.428131 3:+65372719 None:intergenic
GTTGCTTGAAGGAGAGGAAC+TGG 0.431371 3:+65377863 None:intergenic
CCAATCTTCGCTCCTCCATC+AGG 0.435435 3:-65377629 MsG0380015111.01.T01:intron
ACAATATCTAACACGCAGTC+GGG 0.440620 3:+65372342 None:intergenic
AATTTGAGAAGCCTGCAAAA+TGG 0.444037 3:-65372701 MsG0380015111.01.T01:CDS
TGCAAATGCAAAATTTATGC+TGG 0.444095 3:-65373767 MsG0380015111.01.T01:CDS
ATGAGTGCCTTACGCTGATC+AGG 0.446324 3:+65376598 None:intergenic
GGAAAGTGCCGAAACTCAAC+AGG 0.455724 3:-65376624 MsG0380015111.01.T01:CDS
CCAGATTCATATTTAGGATA+GGG 0.459432 3:+65372672 None:intergenic
TGCAACAATAAAATAATACT+TGG 0.464259 3:+65373786 None:intergenic
GCGGAAGTAGGAGGAATTGA+AGG 0.464667 3:+65377752 None:intergenic
GAACGTTATGGCGAAAGAAA+TGG 0.468052 3:-65376385 MsG0380015111.01.T01:CDS
TATAAGAACCCTACCAAGGC+GGG 0.471140 3:-65376347 MsG0380015111.01.T01:CDS
CAGATTCATGAAATTAAGAC+TGG 0.474576 3:-65372796 MsG0380015111.01.T01:CDS
CTGATGGAGGAGCGAAGATT+GGG 0.477070 3:+65377630 None:intergenic
GGTGGTAGAGTTGTTGGTGG+TGG 0.477771 3:+65377814 None:intergenic
TGGAGAGCGTAATAAAGAAC+AGG 0.479792 3:-65373695 MsG0380015111.01.T01:CDS
TTCCGGTTACTGAAACAGAA+TGG 0.483865 3:+65372585 None:intergenic
TCCCTACTTCCCTCTTTCAC+CGG 0.488108 3:-65377665 MsG0380015111.01.T01:CDS
TGCAAAATTTATGCTGGATG+AGG 0.488625 3:-65373761 MsG0380015111.01.T01:CDS
TCCGGTTACTGAAACAGAAT+GGG 0.490312 3:+65372586 None:intergenic
GATTGGGAGAGGACGAAGTC+CGG 0.490357 3:+65377646 None:intergenic
ATGATCACTCTTGCAAAAGA+TGG 0.491383 3:-65376487 MsG0380015111.01.T01:CDS
AGAAGACATGTTCCATCTGC+TGG 0.493548 3:+65377790 None:intergenic
ATTATATAAAGTTTGTGTAA+AGG 0.494941 3:-65372280 MsG0380015111.01.T01:three_prime_UTR
TAGTGTCAACCAACGGTCCA+TGG 0.496162 3:-65373591 MsG0380015111.01.T01:CDS
ATTTGAGAAGCCTGCAAAAT+GGG 0.501452 3:-65372700 MsG0380015111.01.T01:CDS
TTCCAGCTTAGTAGGATTGG+AGG 0.503729 3:+65372722 None:intergenic
AGTAGGAGGAATTGAAGGTA+AGG 0.505266 3:+65377757 None:intergenic
GCGGGGTGATAATGCACCTA+TGG 0.509687 3:-65376329 MsG0380015111.01.T01:CDS
AGGACGAAGTCCGGTGAAAG+AGG 0.511134 3:+65377655 None:intergenic
GCCATTGTTGCTTGAAGGAG+AGG 0.511420 3:+65377857 None:intergenic
TCCAGATTCATATTTAGGAT+AGG 0.511889 3:+65372671 None:intergenic
AGCCTCCAATCCTACTAAGC+TGG 0.514208 3:-65372724 MsG0380015111.01.T01:CDS
TAAATATGAATCTGGATGGT+GGG 0.520478 3:-65372664 MsG0380015111.01.T01:CDS
TACCTAGAACTTAGATCCTA+AGG 0.520854 3:+65372436 None:intergenic
GTCCGGTGAAAGAGGGAAGT+AGG 0.521063 3:+65377663 None:intergenic
CACAATATCTAACACGCAGT+CGG 0.529076 3:+65372341 None:intergenic
CTGGAAATTCGGAGTGTGGT+TGG 0.530465 3:+65377701 None:intergenic
TCATGTTCTTACGTGATCCA+TGG 0.536324 3:+65373574 None:intergenic
GGTGGTGGTAGAGTTGTTGG+TGG 0.546934 3:+65377811 None:intergenic
CAGCGTAAGGCACTCATTCG+AGG 0.548108 3:-65376592 MsG0380015111.01.T01:CDS
CATAAAAGGAGACAAGCTCT+TGG 0.549777 3:-65376457 MsG0380015111.01.T01:CDS
CGAGTCTATGCTATGAGACA+TGG 0.549900 3:-65376649 MsG0380015111.01.T01:CDS
ATTATCACCCCGCCTTGGTA+GGG 0.549919 3:+65376339 None:intergenic
AACATACTTCCTAATTGCAC+TGG 0.550604 3:+65376516 None:intergenic
TTCACCTCTTTCTGTCCAGA+AGG 0.552493 3:+65372630 None:intergenic
TCCGGTGAAAGAGGGAAGTA+GGG 0.554379 3:+65377664 None:intergenic
CGCAATGAAGAAGCGGAAGT+AGG 0.554403 3:+65377740 None:intergenic
TGTTCATGCTTTATTTGCAG+AGG 0.556642 3:-65376413 MsG0380015111.01.T01:CDS
TTACGTGATCCATGGACCGT+TGG 0.559376 3:+65373582 None:intergenic
CTAAATATGAATCTGGATGG+TGG 0.563124 3:-65372665 MsG0380015111.01.T01:CDS
AAAATTTATGCTGGATGAGG+AGG 0.565968 3:-65373758 MsG0380015111.01.T01:CDS
AGTTTCACCATTATTGACAA+TGG 0.570374 3:-65376676 MsG0380015111.01.T01:CDS
TCCTCTCCTTCAAGCAACAA+TGG 0.581546 3:-65377858 MsG0380015111.01.T01:exon
GGACGAAGTCCGGTGAAAGA+GGG 0.581835 3:+65377656 None:intergenic
AAAATTGAAAATCGAGACAC+TGG 0.587500 3:-65377894 MsG0380015111.01.T01:five_prime_UTR
ACTCTACCACCACCAGCAGA+TGG 0.589372 3:-65377802 MsG0380015111.01.T01:CDS
CATGTTCCATCTGCTGGTGG+TGG 0.591711 3:+65377796 None:intergenic
GGAGGAGCGAAGATTGGGAG+AGG 0.593002 3:+65377635 None:intergenic
ACAAGTTCAATGTATGCCAT+AGG 0.593731 3:+65376313 None:intergenic
GGGTCTGGAAATTCGGAGTG+TGG 0.595280 3:+65377697 None:intergenic
TTCACCATTATTGACAATGG+TGG 0.599206 3:-65376673 MsG0380015111.01.T01:CDS
TCAAGCAACAATGGCGAACG+TGG 0.602438 3:-65377849 MsG0380015111.01.T01:exon
GGTGCATTATCACCCCGCCT+TGG 0.608519 3:+65376334 None:intergenic
CAGGCCTCCTGATCAGCGTA+AGG 0.609293 3:-65376605 MsG0380015111.01.T01:CDS
ATCCTAAATATGAATCTGGA+TGG 0.610093 3:-65372668 MsG0380015111.01.T01:CDS
TTGCCCTGGTTGTCTTGATG+CGG 0.610798 3:+65376542 None:intergenic
TACGCTCTCCATAGTAGCGA+CGG 0.620144 3:+65373707 None:intergenic
ATGGCCGCATCAAGACAACC+AGG 0.621297 3:-65376546 MsG0380015111.01.T01:CDS
AATGAAGAAGCGGAAGTAGG+AGG 0.624583 3:+65377743 None:intergenic
CGTTATGGCGAAAGAAATGG+TGG 0.626402 3:-65376382 MsG0380015111.01.T01:CDS
CAATATCTAACACGCAGTCG+GGG 0.629805 3:+65372343 None:intergenic
AGTGAAGCGCAATGAAGAAG+CGG 0.636897 3:+65377733 None:intergenic
GTTGACACTAGAGCAACAGC+AGG 0.644010 3:+65373604 None:intergenic
TGAGAAGCCTGCAAAATGGG+TGG 0.654553 3:-65372697 MsG0380015111.01.T01:CDS
AGTGCCTTACGCTGATCAGG+AGG 0.656273 3:+65376601 None:intergenic
AGACATGTTCCATCTGCTGG+TGG 0.669585 3:+65377793 None:intergenic
GTTGCTCTAGTGTCAACCAA+CGG 0.671470 3:-65373598 MsG0380015111.01.T01:CDS
ATAAGAACCCTACCAAGGCG+GGG 0.673186 3:-65376346 MsG0380015111.01.T01:CDS
CTGACTTTACCAAGAAACTG+CGG 0.676341 3:-65373630 MsG0380015111.01.T01:CDS
AATGAAGGTATACCTGATGG+AGG 0.679743 3:+65377617 None:intergenic
GAATTATAAGAACCCTACCA+AGG 0.696668 3:-65376351 MsG0380015111.01.T01:CDS
ACTTTACCAAGAAACTGCGG+AGG 0.707976 3:-65373627 MsG0380015111.01.T01:CDS
TCTATGCTATGAGACATGGA+AGG 0.721858 3:-65376645 MsG0380015111.01.T01:CDS
TGGCCGCATCAAGACAACCA+GGG 0.726099 3:-65376545 MsG0380015111.01.T01:CDS
TTATAAGAACCCTACCAAGG+CGG 0.735151 3:-65376348 MsG0380015111.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAATTGTAAGAAATA+AGG - Chr3:65377205-65377224 MsG0380015111.01.T01:intron 10.0%
!! AATAAGATCAAAATATAAAA+TGG - Chr3:65374959-65374978 MsG0380015111.01.T01:intron 10.0%
!! ATAAAAATTGTAAGAAATAA+GGG - Chr3:65377206-65377225 MsG0380015111.01.T01:intron 10.0%
!! ATAAGATCAAAATATAAAAT+GGG - Chr3:65374960-65374979 MsG0380015111.01.T01:intron 10.0%
!! ATATATTATTAATGTTTGAA+AGG - Chr3:65375665-65375684 MsG0380015111.01.T01:intron 10.0%
!! TAAAATAAAGTAAGAATATA+AGG - Chr3:65375103-65375122 MsG0380015111.01.T01:intron 10.0%
!! TATATTATTAATGTTTGAAA+GGG - Chr3:65375666-65375685 MsG0380015111.01.T01:intron 10.0%
!!! GACTAAATAATATTTTATTA+AGG - Chr3:65374481-65374500 MsG0380015111.01.T01:intron 10.0%
!! ATTATATAAAGTTTGTGTAA+AGG - Chr3:65377848-65377867 MsG0380015111.01.T01:exon 15.0%
!! TAAAAGTTTAAAAACACATA+TGG - Chr3:65375070-65375089 MsG0380015111.01.T01:intron 15.0%
!!! AAATTATGCATTTGTTTTAT+GGG - Chr3:65372570-65372589 MsG0380015111.01.T01:three_prime_UTR 15.0%
!!! TTCAAACTTTTTGAAAATAT+TGG - Chr3:65376757-65376776 MsG0380015111.01.T01:intron 15.0%
!!! TTTATGTTTCTTGAAATTTT+GGG + Chr3:65375465-65375484 None:intergenic 15.0%
!! AAAGATGATTCTTAAAATTC+GGG + Chr3:65372986-65373005 None:intergenic 20.0%
!! AATACAAATACAACTAAACA+TGG + Chr3:65373946-65373965 None:intergenic 20.0%
!! AATTTGTGTAACTCAATAAA+CGG + Chr3:65374667-65374686 None:intergenic 20.0%
!! ATACAAATACAACTAAACAT+GGG + Chr3:65373945-65373964 None:intergenic 20.0%
!! ATTTAATTATTGTATTGCCT+CGG - Chr3:65372709-65372728 MsG0380015111.01.T01:CDS 20.0%
!! CAAAGATGATTCTTAAAATT+CGG + Chr3:65372987-65373006 None:intergenic 20.0%
!! GAAGAAATTGTTAAATATGT+TGG + Chr3:65375050-65375069 None:intergenic 20.0%
!! TAGATAATAATTACGTTTAC+AGG - Chr3:65372764-65372783 MsG0380015111.01.T01:CDS 20.0%
!! TAGATTTAGATAACTAGATA+AGG - Chr3:65375126-65375145 MsG0380015111.01.T01:intron 20.0%
!! TCAATATTTAAACGAGAATT+GGG + Chr3:65374191-65374210 None:intergenic 20.0%
!! TCATATTATACAACTTGAAA+GGG + Chr3:65377186-65377205 None:intergenic 20.0%
!! TGCAACAATAAAATAATACT+TGG + Chr3:65376345-65376364 None:intergenic 20.0%
!! TTCAATATTTAAACGAGAAT+TGG + Chr3:65374192-65374211 None:intergenic 20.0%
!! TTCATATTATACAACTTGAA+AGG + Chr3:65377187-65377206 None:intergenic 20.0%
!! TTTACATTAACAAAAATCGT+TGG + Chr3:65377586-65377605 None:intergenic 20.0%
!!! AAAAACAATTACACTTTTCA+AGG - Chr3:65374459-65374478 MsG0380015111.01.T01:intron 20.0%
!!! AATATTTGTTTTCTACTAAG+TGG - Chr3:65375589-65375608 MsG0380015111.01.T01:intron 20.0%
!!! AATTAGCTTAAAATTATGGA+CGG + Chr3:65374883-65374902 None:intergenic 20.0%
!!! AATTATGCATTTGTTTTATG+GGG - Chr3:65372571-65372590 MsG0380015111.01.T01:three_prime_UTR 20.0%
!!! ATAATTTTAAGCTAATTTGG+AGG - Chr3:65374886-65374905 MsG0380015111.01.T01:intron 20.0%
!!! ATCAAGGATTTTCAATTTTA+TGG + Chr3:65375740-65375759 None:intergenic 20.0%
!!! CTCAAACTTTTTTTCTAATT+AGG - Chr3:65374996-65375015 MsG0380015111.01.T01:intron 20.0%
!!! GAAATTATGCATTTGTTTTA+TGG - Chr3:65372569-65372588 MsG0380015111.01.T01:three_prime_UTR 20.0%
!!! GATTTTTGTTAATGTAAAAC+TGG - Chr3:65377588-65377607 MsG0380015111.01.T01:intron 20.0%
!!! GTTTATGTTTCTTGAAATTT+TGG + Chr3:65375466-65375485 None:intergenic 20.0%
!!! TCAAATTATAGAAGTTGATT+TGG - Chr3:65374280-65374299 MsG0380015111.01.T01:intron 20.0%
!!! TCCAAATTAGCTTAAAATTA+TGG + Chr3:65374887-65374906 None:intergenic 20.0%
!!! TCCATAATTTTAAGCTAATT+TGG - Chr3:65374883-65374902 MsG0380015111.01.T01:intron 20.0%
!!! TTGATTTGGATGATAATATA+AGG - Chr3:65374294-65374313 MsG0380015111.01.T01:intron 20.0%
!!! TTTGTTATACATGATATTCT+TGG - Chr3:65374051-65374070 MsG0380015111.01.T01:intron 20.0%
!!! TTTTCTAATTAGGTAAACAA+TGG - Chr3:65375006-65375025 MsG0380015111.01.T01:intron 20.0%
! AAAAAACAAAATGAAGACTC+TGG + Chr3:65377061-65377080 None:intergenic 25.0%
! AGTTATTGAAGTAGTATAAC+TGG + Chr3:65373143-65373162 None:intergenic 25.0%
! AGTTCATTTACGTATCAAAT+TGG - Chr3:65376143-65376162 MsG0380015111.01.T01:intron 25.0%
! ATAAACTATGACCATTCAAT+TGG - Chr3:65376612-65376631 MsG0380015111.01.T01:CDS 25.0%
! ATAGTTCTCACCTTAAAATT+CGG - Chr3:65372935-65372954 MsG0380015111.01.T01:intron 25.0%
! ATCTATATTTCACTCATTTG+AGG + Chr3:65377729-65377748 None:intergenic 25.0%
! GCTGTCAACATATAATAAAA+TGG - Chr3:65377257-65377276 MsG0380015111.01.T01:intron 25.0%
! TCATTCTCTCTTATCTTTAA+AGG + Chr3:65375922-65375941 None:intergenic 25.0%
! TGAACTTGTGTAATTATTAG+CGG - Chr3:65373829-65373848 MsG0380015111.01.T01:intron 25.0%
! TGCTGAATTTCAAAAGATAA+TGG + Chr3:65373385-65373404 None:intergenic 25.0%
! TTAAAGATAAGAGAGAATGA+TGG - Chr3:65375922-65375941 MsG0380015111.01.T01:intron 25.0%
! TTCATTGTTAGTGCTAATTT+AGG + Chr3:65374699-65374718 None:intergenic 25.0%
!! AATAACTCAGATTTTAAGCT+CGG + Chr3:65376989-65377008 None:intergenic 25.0%
!! ATTGAGATTTTCATCTTCAA+GGG - Chr3:65374394-65374413 MsG0380015111.01.T01:intron 25.0%
!! TAATAGACTTACATCGATTA+TGG + Chr3:65374508-65374527 None:intergenic 25.0%
!! TATTTTGCATTTGTGTATAG+AGG - Chr3:65374371-65374390 MsG0380015111.01.T01:intron 25.0%
!! TCAAAAAGTTTGAATTTTCC+CGG + Chr3:65376751-65376770 None:intergenic 25.0%
!! TTTTGTATCAGCTAGAAATA+CGG - Chr3:65372887-65372906 MsG0380015111.01.T01:intron 25.0%
!!! AGACATCTATTTTAGCTATT+AGG + Chr3:65376832-65376851 None:intergenic 25.0%
!!! AGATGGTTCAGATTTTTTAA+TGG + Chr3:65376906-65376925 None:intergenic 25.0%
!!! CAAAAGATAATGGATACTAT+GGG + Chr3:65373375-65373394 None:intergenic 25.0%
!!! GCTTTCAGTTTTGTAATTTT+TGG - Chr3:65377635-65377654 MsG0380015111.01.T01:CDS 25.0%
!!! GTTCAGATTTTTTAATGGTA+GGG + Chr3:65376901-65376920 None:intergenic 25.0%
!!! TCAAAAGATAATGGATACTA+TGG + Chr3:65373376-65373395 None:intergenic 25.0%
!!! TCAGTTTTGTAATTTTTGGA+AGG - Chr3:65377639-65377658 MsG0380015111.01.T01:CDS 25.0%
!!! TCTTTTTTGAGTTGTATGTA+CGG - Chr3:65373978-65373997 MsG0380015111.01.T01:intron 25.0%
!!! TTTTGTTTACTAGTAGCTTT+TGG - Chr3:65372645-65372664 MsG0380015111.01.T01:CDS 25.0%
AAAATTGAAAATCGAGACAC+TGG - Chr3:65372234-65372253 MsG0380015111.01.T01:three_prime_UTR 30.0%
AACAAAAATCGTTGGAGAAA+TGG + Chr3:65377578-65377597 None:intergenic 30.0%
AAGATGGTTCTCTACATAAA+AGG - Chr3:65373657-65373676 MsG0380015111.01.T01:CDS 30.0%
AAGCATCTAATCCAATTGAA+TGG + Chr3:65376626-65376645 None:intergenic 30.0%
AATATAAGGTCATGAAAGAG+AGG - Chr3:65374308-65374327 MsG0380015111.01.T01:intron 30.0%
ACTAAAAGTAGAGATGCAAA+AGG + Chr3:65377137-65377156 None:intergenic 30.0%
AGAAATGGATCTACAAATTC+CGG + Chr3:65377563-65377582 None:intergenic 30.0%
AGTTTCACCATTATTGACAA+TGG - Chr3:65373452-65373471 MsG0380015111.01.T01:intron 30.0%
ATAACTGGATTGAATTTCAG+TGG + Chr3:65373128-65373147 None:intergenic 30.0%
ATCCTAAATATGAATCTGGA+TGG - Chr3:65377460-65377479 MsG0380015111.01.T01:intron 30.0%
ATCGTTGGATTAAAATCAGA+CGG - Chr3:65376676-65376695 MsG0380015111.01.T01:CDS 30.0%
ATGATACCATGTTATAAACC+AGG + Chr3:65373051-65373070 None:intergenic 30.0%
ATGCAAAATAGAACACAATG+AGG + Chr3:65374361-65374380 None:intergenic 30.0%
ATGCAATGGAAATGAAATGA+AGG + Chr3:65372529-65372548 None:intergenic 30.0%
CAGATTCATGAAATTAAGAC+TGG - Chr3:65377332-65377351 MsG0380015111.01.T01:intron 30.0%
CTAAAAGTAGAGATGCAAAA+GGG + Chr3:65377136-65377155 None:intergenic 30.0%
CTAATAATTGCATCCCATAA+GGG + Chr3:65373858-65373877 None:intergenic 30.0%
CTATCATACTGATATTATCG+AGG - Chr3:65374233-65374252 MsG0380015111.01.T01:intron 30.0%
GACTCAAAATAATGTGATCA+AGG + Chr3:65375756-65375775 None:intergenic 30.0%
GACTTCAAAGATGAGATATT+TGG - Chr3:65377825-65377844 MsG0380015111.01.T01:CDS 30.0%
GATAAGAGAAAAAGAAACCT+TGG + Chr3:65375552-65375571 None:intergenic 30.0%
GGAAAACTATCCAAGAATTT+AGG + Chr3:65376479-65376498 None:intergenic 30.0%
GTAATAAAGAACAGGATTAC+TGG - Chr3:65376441-65376460 MsG0380015111.01.T01:CDS 30.0%
TAAATATGAATCTGGATGGT+GGG - Chr3:65377464-65377483 MsG0380015111.01.T01:intron 30.0%
TATAAAGTTTGTGTAAAGGC+TGG - Chr3:65377852-65377871 MsG0380015111.01.T01:exon 30.0%
TATTATACAACTTGAAAGGG+TGG + Chr3:65377183-65377202 None:intergenic 30.0%
TGAGTTACACAAATTACACT+CGG - Chr3:65374672-65374691 MsG0380015111.01.T01:intron 30.0%
TGCAAATGCAAAATTTATGC+TGG - Chr3:65376361-65376380 MsG0380015111.01.T01:CDS 30.0%
TTAAAGAGTCTCTTATGCAA+TGG + Chr3:65372543-65372562 None:intergenic 30.0%
! AGAACTACTAGTTTCATTTC+CGG - Chr3:65376166-65376185 MsG0380015111.01.T01:intron 30.0%
! ATAACTCAGATTTTAAGCTC+GGG + Chr3:65376988-65377007 None:intergenic 30.0%
! ATTACAAGCATGCAATTTTG+AGG + Chr3:65375713-65375732 None:intergenic 30.0%
! CCAGATTCATATTTAGGATA+GGG + Chr3:65377459-65377478 None:intergenic 30.0%
! GAACTTTTGCAGATTAAAGA+TGG + Chr3:65374012-65374031 None:intergenic 30.0%
! GATTGAGATTTTCATCTTCA+AGG - Chr3:65374393-65374412 MsG0380015111.01.T01:intron 30.0%
! GTCTCGATTTTCAATTTTAC+AGG + Chr3:65372232-65372251 None:intergenic 30.0%
! TCCAGATTCATATTTAGGAT+AGG + Chr3:65377460-65377479 None:intergenic 30.0%
! TCTTGATGGTTTATAAGCAT+TGG - Chr3:65376238-65376257 MsG0380015111.01.T01:intron 30.0%
!! ACCTTAAAATTCGGTTTTGT+CGG - Chr3:65372944-65372963 MsG0380015111.01.T01:intron 30.0%
!!! ACTTATTGAGTTGGTTTTTG+TGG - Chr3:65376272-65376291 MsG0380015111.01.T01:intron 30.0%
!!! CATTTGTTTTATGGGGAAAT+TGG - Chr3:65372578-65372597 MsG0380015111.01.T01:three_prime_UTR 30.0%
!!! GGTTCAGATTTTTTAATGGT+AGG + Chr3:65376902-65376921 None:intergenic 30.0%
!!! TGCAATTTTGAGGTCAATTT+TGG + Chr3:65375703-65375722 None:intergenic 30.0%
!!! TTCTTGAAATTTTGGGTTGT+GGG + Chr3:65375458-65375477 None:intergenic 30.0%
!!! TTTCTTGAAATTTTGGGTTG+TGG + Chr3:65375459-65375478 None:intergenic 30.0%
!!! TTTTTGTTTTTACCCCTTAG+AGG - Chr3:65377076-65377095 MsG0380015111.01.T01:intron 30.0%
AAAATTTATGCTGGATGAGG+AGG - Chr3:65376370-65376389 MsG0380015111.01.T01:CDS 35.0%
AAAGTTGAACTGTTGTCCTT+AGG - Chr3:65377676-65377695 MsG0380015111.01.T01:CDS 35.0%
AAATTCCAGCTTAGTAGGAT+TGG + Chr3:65377412-65377431 None:intergenic 35.0%
AACATACTTCCTAATTGCAC+TGG + Chr3:65373615-65373634 None:intergenic 35.0%
AAGAGAAAAAGAAACCTTGG+TGG + Chr3:65375549-65375568 None:intergenic 35.0%
AAGAGTGAGTTCTGTTAGAA+AGG + Chr3:65375415-65375434 None:intergenic 35.0%
AAGTAAGGCACAGTGTTTAA+CGG + Chr3:65373083-65373102 None:intergenic 35.0%
AATTTGAGAAGCCTGCAAAA+TGG - Chr3:65377427-65377446 MsG0380015111.01.T01:intron 35.0%
ACAACACAGCTCCTTAAATA+TGG - Chr3:65373563-65373582 MsG0380015111.01.T01:intron 35.0%
ACAAGTTCAATGTATGCCAT+AGG + Chr3:65373818-65373837 None:intergenic 35.0%
ACCATCTGATCTTGATTAGA+TGG - Chr3:65376919-65376938 MsG0380015111.01.T01:intron 35.0%
AGTCAATGTCAGATCACTTT+AGG + Chr3:65376079-65376098 None:intergenic 35.0%
AGTCAGTTTAGTACCTAAAG+TGG - Chr3:65375772-65375791 MsG0380015111.01.T01:intron 35.0%
ATATTGAAAAGCAAGAACCC+TGG - Chr3:65374204-65374223 MsG0380015111.01.T01:intron 35.0%
ATCAGCTAGAAATACGGTAT+AGG - Chr3:65372893-65372912 MsG0380015111.01.T01:intron 35.0%
ATCTATAGCGAGGACAAATT+CGG + Chr3:65372840-65372859 None:intergenic 35.0%
ATGAATCACCAATTCAGTTC+CGG + Chr3:65376188-65376207 None:intergenic 35.0%
ATGAGCATGACAAACATTCA+AGG - Chr3:65374148-65374167 MsG0380015111.01.T01:intron 35.0%
ATGATCACTCTTGCAAAAGA+TGG - Chr3:65373641-65373660 MsG0380015111.01.T01:CDS 35.0%
ATGTGTGTGCTTAGTAAGTA+AGG + Chr3:65374599-65374618 None:intergenic 35.0%
ATTTGAGAAGCCTGCAAAAT+GGG - Chr3:65377428-65377447 MsG0380015111.01.T01:intron 35.0%
CAACTTGAACAAGTAAAACG+AGG + Chr3:65373286-65373305 None:intergenic 35.0%
CACCATCCAGATTCATATTT+AGG + Chr3:65377465-65377484 None:intergenic 35.0%
CAGTATGATAGCTTAAACCA+GGG + Chr3:65374224-65374243 None:intergenic 35.0%
CCCTATCCTAAATATGAATC+TGG - Chr3:65377456-65377475 MsG0380015111.01.T01:intron 35.0%
CTAAATATGAATCTGGATGG+TGG - Chr3:65377463-65377482 MsG0380015111.01.T01:intron 35.0%
GAAGAAACAGCAGTGATAAA+AGG + Chr3:65375488-65375507 None:intergenic 35.0%
GAATTATAAGAACCCTACCA+AGG - Chr3:65373777-65373796 MsG0380015111.01.T01:CDS 35.0%
GCTAATAATTGCATCCCATA+AGG + Chr3:65373859-65373878 None:intergenic 35.0%
GTCAATGTCAGATCACTTTA+GGG + Chr3:65376078-65376097 None:intergenic 35.0%
TACCTAGAACTTAGATCCTA+AGG + Chr3:65377695-65377714 None:intergenic 35.0%
TATATGCTTGCATCAAGAGT+TGG - Chr3:65376856-65376875 MsG0380015111.01.T01:intron 35.0%
TCACGTAGTACTTATTGAGT+TGG - Chr3:65376263-65376282 MsG0380015111.01.T01:intron 35.0%
TCACTCTTTACCAATGAGTT+TGG - Chr3:65375427-65375446 MsG0380015111.01.T01:intron 35.0%
TCAGTATGATAGCTTAAACC+AGG + Chr3:65374225-65374244 None:intergenic 35.0%
TGAGCATGACAAACATTCAA+GGG - Chr3:65374149-65374168 MsG0380015111.01.T01:intron 35.0%
TGCAAAATTTATGCTGGATG+AGG - Chr3:65376367-65376386 MsG0380015111.01.T01:CDS 35.0%
TGGATTCCTGGTTTATAACA+TGG - Chr3:65373042-65373061 MsG0380015111.01.T01:intron 35.0%
TGTAGATGAGAGAGAATGAT+TGG - Chr3:65375966-65375985 MsG0380015111.01.T01:intron 35.0%
TGTCATTGAGCCTAAATTCT+TGG - Chr3:65376466-65376485 MsG0380015111.01.T01:CDS 35.0%
TGTGATAAGATAACGCACAA+AGG + Chr3:65375288-65375307 None:intergenic 35.0%
TTAGACTCAACTGTTACAGT+TGG + Chr3:65373915-65373934 None:intergenic 35.0%
TTAGCTATTAGGCTTAGCTT+AGG + Chr3:65376821-65376840 None:intergenic 35.0%
TTATAAACCAGGAATCCAAG+AGG + Chr3:65373040-65373059 None:intergenic 35.0%
TTCACCATTATTGACAATGG+TGG - Chr3:65373455-65373474 MsG0380015111.01.T01:intron 35.0%
TTCTCAAATTCCAGCTTAGT+AGG + Chr3:65377417-65377436 None:intergenic 35.0%
TTGACACAAGTAATAATCCG+AGG + Chr3:65372729-65372748 None:intergenic 35.0%
TTGTGTGAGCTTAGCATAAA+TGG - Chr3:65374102-65374121 MsG0380015111.01.T01:intron 35.0%
TTTCATTTCCGGAACTGAAT+TGG - Chr3:65376177-65376196 MsG0380015111.01.T01:intron 35.0%
! ATTTAAGGAGCTGTGTTGTT+AGG + Chr3:65373562-65373581 None:intergenic 35.0%
! TCCGACAAAACCGAATTTTA+AGG + Chr3:65372948-65372967 None:intergenic 35.0%
! TGAAATGAAGGTATACCTGA+TGG + Chr3:65372517-65372536 None:intergenic 35.0%
! TGATTGGTTAAACGAGAGAT+AGG - Chr3:65375982-65376001 MsG0380015111.01.T01:intron 35.0%
! TTTGAGTTCACCAACTACAA+TGG - Chr3:65375352-65375371 MsG0380015111.01.T01:intron 35.0%
!! AGTTGGTGAACTCAAAGTTA+AGG + Chr3:65375348-65375367 None:intergenic 35.0%
!! ATGACACCTTCTAGTTCATA+AGG + Chr3:65375887-65375906 None:intergenic 35.0%
!! CAAGTAAAACGAGGTATTGA+TGG + Chr3:65373277-65373296 None:intergenic 35.0%
!! TATGAACTAGAAGGTGTCAT+TGG - Chr3:65375887-65375906 MsG0380015111.01.T01:intron 35.0%
!! TGTTCATGCTTTATTTGCAG+AGG - Chr3:65373715-65373734 MsG0380015111.01.T01:CDS 35.0%
!!! TAGAAGGTGTCATTGGTTTT+TGG - Chr3:65375894-65375913 MsG0380015111.01.T01:intron 35.0%
ACAATATCTAACACGCAGTC+GGG + Chr3:65377789-65377808 None:intergenic 40.0%
AGAACTTTCTGCTACTGCAA+TGG - Chr3:65373199-65373218 MsG0380015111.01.T01:intron 40.0%
AGTAGGAGGAATTGAAGGTA+AGG + Chr3:65372374-65372393 None:intergenic 40.0%
AGTCAGCATATCTCAATCGT+TGG - Chr3:65376661-65376680 MsG0380015111.01.T01:CDS 40.0%
ATAATTGCATCCCATAAGGG+CGG + Chr3:65373855-65373874 None:intergenic 40.0%
ATCTATGTCACTGACGCATA+TGG - Chr3:65372682-65372701 MsG0380015111.01.T01:CDS 40.0%
ATTCTTGGCTACCAAGAACT+CGG - Chr3:65374066-65374085 MsG0380015111.01.T01:intron 40.0%
CACAATATCTAACACGCAGT+CGG + Chr3:65377790-65377809 None:intergenic 40.0%
CATAAAAGGAGACAAGCTCT+TGG - Chr3:65373671-65373690 MsG0380015111.01.T01:CDS 40.0%
CTGACTTTACCAAGAAACTG+CGG - Chr3:65376498-65376517 MsG0380015111.01.T01:CDS 40.0%
GAACGTTATGGCGAAAGAAA+TGG - Chr3:65373743-65373762 MsG0380015111.01.T01:CDS 40.0%
GAATCATCTTTGCACTCTTC+TGG - Chr3:65372995-65373014 MsG0380015111.01.T01:intron 40.0%
GAGAACTAAGCACACACATT+AGG - Chr3:65374628-65374647 MsG0380015111.01.T01:intron 40.0%
GAGCATGACAAACATTCAAG+GGG - Chr3:65374150-65374169 MsG0380015111.01.T01:intron 40.0%
GATAGGAACCAATGTACCTA+AGG - Chr3:65375999-65376018 MsG0380015111.01.T01:intron 40.0%
GCCATCTAATCAAGATCAGA+TGG + Chr3:65376923-65376942 None:intergenic 40.0%
GGAAGTAGGGATTTGGATTT+GGG + Chr3:65372454-65372473 None:intergenic 40.0%
GGCGTTCAAATAGTTGTTCT+TGG + Chr3:65376403-65376422 None:intergenic 40.0%
GTCCTTAGGATCTAAGTTCT+AGG - Chr3:65377690-65377709 MsG0380015111.01.T01:CDS 40.0%
GTTATGACAACAGCAAAGAG+TGG + Chr3:65375210-65375229 None:intergenic 40.0%
GTTCTCTTGAAGACCACTTT+AGG + Chr3:65375788-65375807 None:intergenic 40.0%
GTTTGAGCTACCATTGTAGT+TGG + Chr3:65375365-65375384 None:intergenic 40.0%
TCATAAGGCCTTCACAATCT+AGG + Chr3:65375872-65375891 None:intergenic 40.0%
TCATGTTCTTACGTGATCCA+TGG + Chr3:65376557-65376576 None:intergenic 40.0%
TCCCATTCTGTTTCAGTAAC+CGG - Chr3:65377541-65377560 MsG0380015111.01.T01:intron 40.0%
TCCGGTTACTGAAACAGAAT+GGG + Chr3:65377545-65377564 None:intergenic 40.0%
TCGACCACCATTGTCAATAA+TGG + Chr3:65373462-65373481 None:intergenic 40.0%
TCTATAGCGAGGACAAATTC+GGG + Chr3:65372839-65372858 None:intergenic 40.0%
TCTATGCTATGAGACATGGA+AGG - Chr3:65373483-65373502 MsG0380015111.01.T01:intron 40.0%
TCTGTTCAATCTGACAACGT+TGG - Chr3:65375506-65375525 MsG0380015111.01.T01:intron 40.0%
TCTTGATGCGGCCATATTTA+AGG + Chr3:65373577-65373596 None:intergenic 40.0%
TGGATTTGGGTCTGGAAATT+CGG + Chr3:65372441-65372460 None:intergenic 40.0%
TGTCGAATCCTAGATTGTGA+AGG - Chr3:65375861-65375880 MsG0380015111.01.T01:intron 40.0%
TTAGCAACTGACACCTCTAA+GGG + Chr3:65377092-65377111 None:intergenic 40.0%
TTATAAGAACCCTACCAAGG+CGG - Chr3:65373780-65373799 MsG0380015111.01.T01:CDS 40.0%
TTCATCTTCAAGGGTGAAAC+TGG - Chr3:65374403-65374422 MsG0380015111.01.T01:intron 40.0%
TTCCGGTTACTGAAACAGAA+TGG + Chr3:65377546-65377565 None:intergenic 40.0%
TTTAGCAACTGACACCTCTA+AGG + Chr3:65377093-65377112 None:intergenic 40.0%
TTTCTTTCGCCATAACGTTC+TGG + Chr3:65373743-65373762 None:intergenic 40.0%
TTTGATCTTAAGCCAGTGAC+CGG - Chr3:65376729-65376748 MsG0380015111.01.T01:intron 40.0%
! AATGAAGGTATACCTGATGG+AGG + Chr3:65372514-65372533 None:intergenic 40.0%
! ATCAAGAGTTGGTCATCTGT+GGG - Chr3:65376867-65376886 MsG0380015111.01.T01:intron 40.0%
! GACGAAAGATTGTTCTAGCT+AGG + Chr3:65375823-65375842 None:intergenic 40.0%
! GTTAGAAAGGATGTGCCTTT+TGG + Chr3:65375402-65375421 None:intergenic 40.0%
! TCACAATCTAGGATTCGACA+GGG + Chr3:65375861-65375880 None:intergenic 40.0%
! TGAAGGCCTTATGAACTAGA+AGG - Chr3:65375878-65375897 MsG0380015111.01.T01:intron 40.0%
! TGGAGAGCGTAATAAAGAAC+AGG - Chr3:65376433-65376452 MsG0380015111.01.T01:CDS 40.0%
! TTCACAATCTAGGATTCGAC+AGG + Chr3:65375862-65375881 None:intergenic 40.0%
! TTTTGCTTAAACCCTCCAGT+AGG + Chr3:65376046-65376065 None:intergenic 40.0%
!! AGACTGGATCGAGTTTTATC+AGG - Chr3:65377348-65377367 MsG0380015111.01.T01:intron 40.0%
!! CAGATCAAAGGTGTTCTCAT+AGG - Chr3:65373222-65373241 MsG0380015111.01.T01:intron 40.0%
!! GTCACTGGCTTAAGATCAAA+CGG + Chr3:65376729-65376748 None:intergenic 40.0%
AAACACATCCACTCATGCTC+AGG + Chr3:65372870-65372889 None:intergenic 45.0%
AAGAGAGAGTGGGACAATTC+GGG + Chr3:65375168-65375187 None:intergenic 45.0%
AAGGGTGGATCTCTATCTGA+TGG + Chr3:65377168-65377187 None:intergenic 45.0%
AATCTGCCAAAACACGCACA+GGG + Chr3:65377318-65377337 None:intergenic 45.0%
AATGAAGAAGCGGAAGTAGG+AGG + Chr3:65372388-65372407 None:intergenic 45.0%
ACCAATGTACCTAAGGCCAA+TGG - Chr3:65376006-65376025 MsG0380015111.01.T01:intron 45.0%
ACTTTACCAAGAAACTGCGG+AGG - Chr3:65376501-65376520 MsG0380015111.01.T01:CDS 45.0%
AGAAGACATGTTCCATCTGC+TGG + Chr3:65372341-65372360 None:intergenic 45.0%
AGGACTGAACATCTATAGCG+AGG + Chr3:65372850-65372869 None:intergenic 45.0%
AGTGAAGCGCAATGAAGAAG+CGG + Chr3:65372398-65372417 None:intergenic 45.0%
CAATATCTAACACGCAGTCG+GGG + Chr3:65377788-65377807 None:intergenic 45.0%
CAGCAAAGAGTGGAGAAAGA+TGG + Chr3:65375200-65375219 None:intergenic 45.0%
CCAAGTGAAATCCTACTGGA+GGG - Chr3:65376032-65376051 MsG0380015111.01.T01:intron 45.0%
CCACTCTTACCTCTTCCAAA+AGG - Chr3:65375384-65375403 MsG0380015111.01.T01:intron 45.0%
CGAGTCTATGCTATGAGACA+TGG - Chr3:65373479-65373498 MsG0380015111.01.T01:intron 45.0%
CGCAGTTTCTTGGTAAAGTC+AGG + Chr3:65376500-65376519 None:intergenic 45.0%
CGTTATGGCGAAAGAAATGG+TGG - Chr3:65373746-65373765 MsG0380015111.01.T01:CDS 45.0%
CTACTGCAATGGCAGATCAA+AGG - Chr3:65373210-65373229 MsG0380015111.01.T01:intron 45.0%
GAAAGAGGGAAGTAGGGATT+TGG + Chr3:65372461-65372480 None:intergenic 45.0%
GAAGAGAGAGTGGGACAATT+CGG + Chr3:65375169-65375188 None:intergenic 45.0%
GAAGATGTGTAGAGAGAGTG+AGG + Chr3:65375247-65375266 None:intergenic 45.0%
GAGTGGAGAAAGATGGCAAT+TGG + Chr3:65375193-65375212 None:intergenic 45.0%
GCATCCAAGTGAAATCCTAC+TGG - Chr3:65376028-65376047 MsG0380015111.01.T01:intron 45.0%
GCTATTAGGCTTAGCTTAGG+TGG + Chr3:65376818-65376837 None:intergenic 45.0%
GGATTTCACTTGGATGCCAT+TGG + Chr3:65376025-65376044 None:intergenic 45.0%
GGGAAGTAGGGATTTGGATT+TGG + Chr3:65372455-65372474 None:intergenic 45.0%
GTTGCTCTAGTGTCAACCAA+CGG - Chr3:65376530-65376549 MsG0380015111.01.T01:CDS 45.0%
TAGCAACTGACACCTCTAAG+GGG + Chr3:65377091-65377110 None:intergenic 45.0%
TAGGGATTTGGATTTGGGTC+TGG + Chr3:65372449-65372468 None:intergenic 45.0%
TATAAGAACCCTACCAAGGC+GGG - Chr3:65373781-65373800 MsG0380015111.01.T01:CDS 45.0%
TCCAAGTGAAATCCTACTGG+AGG - Chr3:65376031-65376050 MsG0380015111.01.T01:intron 45.0%
TCCATGCAGTCATGCAAATC+AGG + Chr3:65377020-65377039 None:intergenic 45.0%
TCCTCTCCTTCAAGCAACAA+TGG - Chr3:65372270-65372289 MsG0380015111.01.T01:three_prime_UTR 45.0%
TGGGAAACTTTCTTGCCTTC+TGG - Chr3:65377483-65377502 MsG0380015111.01.T01:intron 45.0%
TTCACCTCTTTCTGTCCAGA+AGG + Chr3:65377501-65377520 None:intergenic 45.0%
TTCCAGCTTAGTAGGATTGG+AGG + Chr3:65377409-65377428 None:intergenic 45.0%
TTCTTGGCTACCAAGAACTC+GGG - Chr3:65374067-65374086 MsG0380015111.01.T01:intron 45.0%
TTGATCTTAAGCCAGTGACC+GGG - Chr3:65376730-65376749 MsG0380015111.01.T01:intron 45.0%
! CATCAAGAGTTGGTCATCTG+TGG - Chr3:65376866-65376885 MsG0380015111.01.T01:intron 45.0%
! GAAAAAGAAACCTTGGTGGC+AGG + Chr3:65375545-65375564 None:intergenic 45.0%
! GTTTGAATTTTCCCGGTCAC+TGG + Chr3:65376744-65376763 None:intergenic 45.0%
! TCCTGATTTGCATGACTGCA+TGG - Chr3:65377016-65377035 MsG0380015111.01.T01:intron 45.0%
! TCTCATTTTCCTGCACCTCT+TGG - Chr3:65373022-65373041 MsG0380015111.01.T01:intron 45.0%
!! AAGGATGTGCCTTTTGGAAG+AGG + Chr3:65375396-65375415 None:intergenic 45.0%
!! CCTTTTGGAAGAGGTAAGAG+TGG + Chr3:65375387-65375406 None:intergenic 45.0%
AATGGCGAACGTGGCAGTTA+TGG - Chr3:65372288-65372307 MsG0380015111.01.T01:three_prime_UTR 50.0%
ACAAGAGCTAGCACGATGCT+TGG - Chr3:65375314-65375333 MsG0380015111.01.T01:intron 50.0%
AGACATGTTCCATCTGCTGG+TGG + Chr3:65372338-65372357 None:intergenic 50.0%
AGAGAGAGTGGGACAATTCG+GGG + Chr3:65375167-65375186 None:intergenic 50.0%
AGCCTCCAATCCTACTAAGC+TGG - Chr3:65377404-65377423 MsG0380015111.01.T01:intron 50.0%
ATAAGAACCCTACCAAGGCG+GGG - Chr3:65373782-65373801 MsG0380015111.01.T01:CDS 50.0%
ATAGCGAGGACAAATTCGGG+TGG + Chr3:65372836-65372855 None:intergenic 50.0%
ATCTGCCAAAACACGCACAG+GGG + Chr3:65377317-65377336 None:intergenic 50.0%
ATGAGTGCCTTACGCTGATC+AGG + Chr3:65373533-65373552 None:intergenic 50.0%
ATTATCACCCCGCCTTGGTA+GGG + Chr3:65373792-65373811 None:intergenic 50.0%
ATTATTAGCGGCCGCCCTTA+TGG - Chr3:65373841-65373860 MsG0380015111.01.T01:intron 50.0%
CCCTCCAGTAGGATTTCACT+TGG + Chr3:65376035-65376054 None:intergenic 50.0%
CGCAATGAAGAAGCGGAAGT+AGG + Chr3:65372391-65372410 None:intergenic 50.0%
CTGATGGAGGAGCGAAGATT+GGG + Chr3:65372501-65372520 None:intergenic 50.0%
CTGGAAATTCGGAGTGTGGT+TGG + Chr3:65372430-65372449 None:intergenic 50.0%
CTTGCCTTCTGGACAGAAAG+AGG - Chr3:65377494-65377513 MsG0380015111.01.T01:intron 50.0%
GAATCTGCCAAAACACGCAC+AGG + Chr3:65377319-65377338 None:intergenic 50.0%
GACAATTCGGGGGGATATCA+TGG + Chr3:65375156-65375175 None:intergenic 50.0%
GCAATTGGCGAAGAGAGAGT+GGG + Chr3:65375178-65375197 None:intergenic 50.0%
GCAGAGGTTCCAGAACGTTA+TGG - Chr3:65373731-65373750 MsG0380015111.01.T01:CDS 50.0%
GCGGAAGTAGGAGGAATTGA+AGG + Chr3:65372379-65372398 None:intergenic 50.0%
GTGGGAGAGACCAAACTCAT+TGG + Chr3:65375440-65375459 None:intergenic 50.0%
GTTGACACTAGAGCAACAGC+AGG + Chr3:65376527-65376546 None:intergenic 50.0%
GTTGCTTGAAGGAGAGGAAC+TGG + Chr3:65372268-65372287 None:intergenic 50.0%
TAAGCAGAAGCCCGAGTTCT+TGG + Chr3:65374080-65374099 None:intergenic 50.0%
TACGCTCTCCATAGTAGCGA+CGG + Chr3:65376424-65376443 None:intergenic 50.0%
TAGTGTCAACCAACGGTCCA+TGG - Chr3:65376537-65376556 MsG0380015111.01.T01:CDS 50.0%
TCAAGCAACAATGGCGAACG+TGG - Chr3:65372279-65372298 MsG0380015111.01.T01:three_prime_UTR 50.0%
TCAGGAGGCCTGTTGAGTTT+CGG + Chr3:65373515-65373534 None:intergenic 50.0%
TCCCTACTTCCCTCTTTCAC+CGG - Chr3:65372463-65372482 MsG0380015111.01.T01:three_prime_UTR 50.0%
TCCGGTGAAAGAGGGAAGTA+GGG + Chr3:65372467-65372486 None:intergenic 50.0%
TGAGAAGCCTGCAAAATGGG+TGG - Chr3:65377431-65377450 MsG0380015111.01.T01:intron 50.0%
TGTGCCTTACTTCCCTAACC+CGG - Chr3:65373091-65373110 MsG0380015111.01.T01:intron 50.0%
TGTTCAGTCCTGAGCATGAG+TGG - Chr3:65372859-65372878 MsG0380015111.01.T01:intron 50.0%
TTACGTGATCCATGGACCGT+TGG + Chr3:65376549-65376568 None:intergenic 50.0%
TTATTAGCGGCCGCCCTTAT+GGG - Chr3:65373842-65373861 MsG0380015111.01.T01:intron 50.0%
TTCAGTGGACGAGAAGCAAC+CGG + Chr3:65373113-65373132 None:intergenic 50.0%
TTGCCCTGGTTGTCTTGATG+CGG + Chr3:65373589-65373608 None:intergenic 50.0%
TTTGAACGCCGTCGCTACTA+TGG - Chr3:65376413-65376432 MsG0380015111.01.T01:CDS 50.0%
! CGTTCGCCATTGTTGCTTGA+AGG + Chr3:65372279-65372298 None:intergenic 50.0%
! GAGTTGGTCATCTGTGGGAT+TGG - Chr3:65376872-65376891 MsG0380015111.01.T01:intron 50.0%
! GCCATTGTTGCTTGAAGGAG+AGG + Chr3:65372274-65372293 None:intergenic 50.0%
!! ACTTGGATGCCATTGGCCTT+AGG + Chr3:65376018-65376037 None:intergenic 50.0%
!! GCCATTGGCCTTAGGTACAT+TGG + Chr3:65376010-65376029 None:intergenic 50.0%
!! GGAAAGTGCCGAAACTCAAC+AGG - Chr3:65373504-65373523 MsG0380015111.01.T01:intron 50.0%
ACTCTACCACCACCAGCAGA+TGG - Chr3:65372326-65372345 MsG0380015111.01.T01:three_prime_UTR 55.0%
ACTCTGGATTGCCTGCAGTC+AGG + Chr3:65377045-65377064 None:intergenic 55.0%
AGAGAGTGGGACAATTCGGG+GGG + Chr3:65375165-65375184 None:intergenic 55.0%
AGCTAGCACGATGCTTGGCA+TGG - Chr3:65375319-65375338 MsG0380015111.01.T01:intron 55.0%
AGGACGAAGTCCGGTGAAAG+AGG + Chr3:65372476-65372495 None:intergenic 55.0%
AGTGCCTTACGCTGATCAGG+AGG + Chr3:65373530-65373549 None:intergenic 55.0%
ATGGCCGCATCAAGACAACC+AGG - Chr3:65373582-65373601 MsG0380015111.01.T01:intron 55.0%
CATGTTCCATCTGCTGGTGG+TGG + Chr3:65372335-65372354 None:intergenic 55.0%
CATTATCACCCCGCCTTGGT+AGG + Chr3:65373793-65373812 None:intergenic 55.0%
CCAATCTTCGCTCCTCCATC+AGG - Chr3:65372499-65372518 MsG0380015111.01.T01:three_prime_UTR 55.0%
CCTGATGGAGGAGCGAAGAT+TGG + Chr3:65372502-65372521 None:intergenic 55.0%
CTAGCACGATGCTTGGCATG+GGG - Chr3:65375321-65375340 MsG0380015111.01.T01:intron 55.0%
CTGCATGGATTCCTGACTGC+AGG - Chr3:65377031-65377050 MsG0380015111.01.T01:intron 55.0%
GACGAGAAGCAACCGGGTTA+GGG + Chr3:65373106-65373125 None:intergenic 55.0%
GAGAGAGTGGGACAATTCGG+GGG + Chr3:65375166-65375185 None:intergenic 55.0%
GATTGGGAGAGGACGAAGTC+CGG + Chr3:65372485-65372504 None:intergenic 55.0%
GCTAGCACGATGCTTGGCAT+GGG - Chr3:65375320-65375339 MsG0380015111.01.T01:intron 55.0%
GGACGAAGTCCGGTGAAAGA+GGG + Chr3:65372475-65372494 None:intergenic 55.0%
GGCAATTGGCGAAGAGAGAG+TGG + Chr3:65375179-65375198 None:intergenic 55.0%
GGGCAAGAGCCAGTGCAATT+AGG - Chr3:65373603-65373622 MsG0380015111.01.T01:CDS 55.0%
GGGTCTGGAAATTCGGAGTG+TGG + Chr3:65372434-65372453 None:intergenic 55.0%
GTCCGGTGAAAGAGGGAAGT+AGG + Chr3:65372468-65372487 None:intergenic 55.0%
TCAGTGGACGAGAAGCAACC+GGG + Chr3:65373112-65373131 None:intergenic 55.0%
TCCTGCACCTCTTGGATTCC+TGG - Chr3:65373030-65373049 MsG0380015111.01.T01:intron 55.0%
TGGCCGCATCAAGACAACCA+GGG - Chr3:65373583-65373602 MsG0380015111.01.T01:intron 55.0%
TTCTGATGCTCCTGCCACCA+AGG - Chr3:65375532-65375551 MsG0380015111.01.T01:intron 55.0%
! ACCAGGAATCCAAGAGGTGC+AGG + Chr3:65373034-65373053 None:intergenic 55.0%
! CAGCGTAAGGCACTCATTCG+AGG - Chr3:65373536-65373555 MsG0380015111.01.T01:intron 55.0%
! GCAACCGGGTTAGGGAAGTA+AGG + Chr3:65373098-65373117 None:intergenic 55.0%
! GCGGGGTGATAATGCACCTA+TGG - Chr3:65373799-65373818 MsG0380015111.01.T01:CDS 55.0%
! GGTGGTAGAGTTGTTGGTGG+TGG + Chr3:65372317-65372336 None:intergenic 55.0%
! GGTGGTGGTAGAGTTGTTGG+TGG + Chr3:65372320-65372339 None:intergenic 55.0%
!! AATTGCACTGGCTCTTGCCC+TGG + Chr3:65373603-65373622 None:intergenic 55.0%
!! GCTGGTGGTGGTAGAGTTGT+TGG + Chr3:65372323-65372342 None:intergenic 55.0%
!! TAGGGTGCCACCCATTTTGC+AGG + Chr3:65377441-65377460 None:intergenic 55.0%
AGCAGGCCTCCGCAGTTTCT+TGG + Chr3:65376510-65376529 None:intergenic 60.0%
CAGGCCTCCTGATCAGCGTA+AGG - Chr3:65373523-65373542 MsG0380015111.01.T01:intron 60.0%
GGACGAGAAGCAACCGGGTT+AGG + Chr3:65373107-65373126 None:intergenic 60.0%
GGAGGAGCGAAGATTGGGAG+AGG + Chr3:65372496-65372515 None:intergenic 60.0%
GGTGCATTATCACCCCGCCT+TGG + Chr3:65373797-65373816 None:intergenic 60.0%
! CTCTGCCCCTGTGCGTGTTT+TGG - Chr3:65377309-65377328 MsG0380015111.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 65372227 65377923 65372227 ID=MsG0380015111.01;Name=MsG0380015111.01
Chr3 mRNA 65372227 65377923 65372227 ID=MsG0380015111.01.T01;Parent=MsG0380015111.01;Name=MsG0380015111.01.T01;_AED=0.48;_eAED=0.49;_QI=62|0.5|0.6|1|1|1|5|396|362
Chr3 exon 65372227 65372815 65372227 ID=MsG0380015111.01.T01:exon:13124;Parent=MsG0380015111.01.T01
Chr3 exon 65373586 65373818 65373586 ID=MsG0380015111.01.T01:exon:13123;Parent=MsG0380015111.01.T01
Chr3 exon 65375726 65375759 65375726 ID=MsG0380015111.01.T01:exon:13122;Parent=MsG0380015111.01.T01
Chr3 exon 65376313 65376709 65376313 ID=MsG0380015111.01.T01:exon:13121;Parent=MsG0380015111.01.T01
Chr3 exon 65377630 65377923 65377630 ID=MsG0380015111.01.T01:exon:13120;Parent=MsG0380015111.01.T01
Chr3 five_prime_UTR 65377862 65377923 65377862 ID=MsG0380015111.01.T01:five_prime_utr;Parent=MsG0380015111.01.T01
Chr3 CDS 65377630 65377861 65377630 ID=MsG0380015111.01.T01:cds;Parent=MsG0380015111.01.T01
Chr3 CDS 65376313 65376709 65376313 ID=MsG0380015111.01.T01:cds;Parent=MsG0380015111.01.T01
Chr3 CDS 65375726 65375759 65375726 ID=MsG0380015111.01.T01:cds;Parent=MsG0380015111.01.T01
Chr3 CDS 65373586 65373818 65373586 ID=MsG0380015111.01.T01:cds;Parent=MsG0380015111.01.T01
Chr3 CDS 65372623 65372815 65372623 ID=MsG0380015111.01.T01:cds;Parent=MsG0380015111.01.T01
Chr3 three_prime_UTR 65372227 65372622 65372227 ID=MsG0380015111.01.T01:three_prime_utr;Parent=MsG0380015111.01.T01
Gene Sequence

>MsG0380015111.01.T01

ATGGCGAACGTGGCAGTTATGGCTACCACCACCAACAACTCTACCACCACCAGCAGATGGAACATGTCTTCTCTTCGCTCTGCCTTACCTTCAATTCCTCCTACTTCCGCTTCTTCATTGCGCTTCACTCGTTCTTCTCCAACCACACTCCGAATTTCCAGACCCAAATCCAAATCCCTACTTCCCTCTTTCACCGGACTTCGTCCTCTCCCAATCTTCGCTCCTCCATCAGAATTTGATCACAGTTTCACCATTATTGACAATGGTGGTCGAGTCTATGCTATGAGACATGGAAGGAAAGTGCCGAAACTCAACAGGCCTCCTGATCAGCGTAAGGCACTCATTCGAGGCCTAACAACACAGCTCCTTAAATATGGCCGCATCAAGACAACCAGGGCAAGAGCCAGTGCAATTAGGAAGTATGTTGATAAAATGATCACTCTTGCAAAAGATGGTTCTCTACATAAAAGGAGACAAGCTCTTGGCTTCATCTATGAGAAGCAGATTGTTCATGCTTTATTTGCAGAGGTTCCAGAACGTTATGGCGAAAGAAATGGTGGTTATACAAGAATTATAAGAACCCTACCAAGGCGGGGTGATAATGCACCTATGGCATACATTGAACTTGTAGGATTGAGATTTTCATCTTCAAGGGTGAAACTGAGTGAGTTCACCAAGTATTATTTTATTGTTGCAAATGCAAAATTTATGCTGGATGAGGAGGAGCATTTCCAAGAACAACTATTTGAACGCCGTCGCTACTATGGAGAGCGTAATAAAGAACAGGATTACTGGCTTGTCATTGAGCCTAAATTCTTGGATAGTTTTCCTGACTTTACCAAGAAACTGCGGAGGCCTGCTGTTGCTCTAGTGTCAACCAACGGTCCATGGATCACATTCATGAAATTAAGACTGGATCGAGTTTTATCAGGAAGTTTTGAAGCTGACAGCTTAGAAGAAGCATTAGCCTCCAATCCTACTAAGCTGGAATTTGAGAAGCCTGCAAAATGGGTGGCACCCTATCCTAAATATGAATCTGGATGGTGGGAAACTTTCTTGCCTTCTGGACAGAAAGAGGTGAACTCTTAA

Protein sequence

>MsG0380015111.01.T01

MANVAVMATTTNNSTTTSRWNMSSLRSALPSIPPTSASSLRFTRSSPTTLRISRPKSKSLLPSFTGLRPLPIFAPPSEFDHSFTIIDNGGRVYAMRHGRKVPKLNRPPDQRKALIRGLTTQLLKYGRIKTTRARASAIRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVPERYGERNGGYTRIIRTLPRRGDNAPMAYIELVGLRFSSSRVKLSEFTKYYFIVANAKFMLDEEEHFQEQLFERRRYYGERNKEQDYWLVIEPKFLDSFPDFTKKLRRPAVALVSTNGPWITFMKLRLDRVLSGSFEADSLEEALASNPTKLEFEKPAKWVAPYPKYESGWWETFLPSGQKEVNS*