AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1461840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1461840 MtrunA17_Chr3g0110001 96.143 363 14 0 1 363 1 363 0.0 724
Msa1461840 MtrunA17_Chr6g0464971 53.782 357 161 2 7 363 9 361 7.38e-140 401
Msa1461840 MtrunA17_Chr6g0465111 53.444 363 165 2 1 363 1 359 7.44e-140 401
Msa1461840 MtrunA17_Chr6g0465121 51.791 363 166 3 1 363 14 367 8.39e-133 384
Msa1461840 MtrunA17_Chr6g0464961 53.221 357 163 2 7 363 31 383 4.80e-130 379
Msa1461840 MtrunA17_Chr1g0200981 49.300 357 177 2 7 363 6 358 2.62e-123 359
Msa1461840 MtrunA17_Chr6g0477771 48.907 366 180 4 1 363 1 362 1.03e-120 353
Msa1461840 MtrunA17_Chr6g0464931 61.765 102 39 0 7 108 9 110 2.68e-36 128
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1461840 AT4G09670.1 50.964 363 174 2 1 363 1 359 8.65e-133 384
Msa1461840 AT1G66130.1 50.815 368 172 5 1 363 1 364 2.25e-127 370
Msa1461840 AT1G34200.1 45.055 364 184 5 1 363 1 349 2.03e-108 322

Find 113 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGCAAGTATTAGAGATTA+TGG 0.187812 tig0041764:-4710 Msa1461840:CDS
TGAGTCTTTCTACTAATTTC+TGG 0.203414 tig0041764:+4665 None:intergenic
GGCCAATGGTGTGCAGTTTA+TGG 0.258616 tig0041764:-6054 Msa1461840:CDS
GCCAACAACTCAAGAATTCT+TGG 0.283873 tig0041764:-5182 Msa1461840:CDS
ACTGCATTGGTGCATCCTTA+TGG 0.311051 tig0041764:-5096 Msa1461840:CDS
TTGTAAACTACCTAGCTATA+AGG 0.315546 tig0041764:+4589 None:intergenic
CTTTCTAATTCCGATGGTAT+TGG 0.331158 tig0041764:-5975 Msa1461840:CDS
CCAGCCAGTGTAAGAATCTA+TGG 0.331530 tig0041764:-6251 Msa1461840:CDS
GCTTCATTTGACTTCACATT+TGG 0.336307 tig0041764:-4842 Msa1461840:CDS
TCCAAGAATTCTTGAGTTGT+TGG 0.338304 tig0041764:+5181 None:intergenic
TTGCAAGTATTAGAGATTAT+GGG 0.349073 tig0041764:-4709 Msa1461840:CDS
GATGAGGTTGTGGAGGATTC+AGG 0.351521 tig0041764:-6221 Msa1461840:CDS
CTTGTAGCCCTTTGCCCATA+AGG 0.361945 tig0041764:+5081 None:intergenic
GGTCTCAGCCTTCTACAAAA+TGG 0.364608 tig0041764:-4688 Msa1461840:CDS
GCGAAAGATACAGTGCGTTT+TGG 0.371856 tig0041764:-6404 Msa1461840:CDS
GAAGCACTAGTCTCCTTGTA+TGG 0.385920 tig0041764:+4860 None:intergenic
AAAATAACCAAGTGTGTGTT+TGG 0.390831 tig0041764:-4523 Msa1461840:three_prime_UTR
CTGCATTGGTGCATCCTTAT+GGG 0.395767 tig0041764:-5095 Msa1461840:CDS
CAATGGGTCTATGCATCTTA+AGG 0.404896 tig0041764:-4894 Msa1461840:CDS
ATATTTGCAACTGTTTGATT+TGG 0.405206 tig0041764:+4968 None:intergenic
TTGGATGCTCTTGGTGCCCT+TGG 0.407577 tig0041764:-5133 Msa1461840:CDS
CTACCTAGCTATAAGGAAAC+AGG 0.424774 tig0041764:+4596 None:intergenic
TTGGCAACATGAACTTCCTC+TGG 0.425477 tig0041764:+4779 None:intergenic
AATCACATCTTCTTTGCAAT+GGG 0.432768 tig0041764:-4996 Msa1461840:CDS
TTGGCATTGTTGATGTGCTA+TGG 0.440696 tig0041764:+5200 None:intergenic
GCCGCGTTTCGTGTGACGTC+GGG 0.440927 tig0041764:+5034 None:intergenic
ACCTCACGTGCAGACTCGTT+GGG 0.443029 tig0041764:+6174 None:intergenic
AATTTGTTGATCTTCACATT+GGG 0.460791 tig0041764:-4814 Msa1461840:CDS
GCATGTGCTGGTGGAGAAGC+CGG 0.461905 tig0041764:-6123 Msa1461840:CDS
CAATCACATCTTCTTTGCAA+TGG 0.469069 tig0041764:-4997 Msa1461840:CDS
ATTTCTTTCTCACACGTCCA+TGG 0.472573 tig0041764:-4936 Msa1461840:CDS
TGATGATACAAGAGTTTGCT+AGG 0.472779 tig0041764:-4736 Msa1461840:CDS
CAACGAGTCTGCACGTGAGG+TGG 0.479606 tig0041764:-6172 Msa1461840:CDS
TGATATGGAGCGGCTTCCTA+TGG 0.484794 tig0041764:+6307 None:intergenic
TTGCAACTGTTTGATTTGGT+TGG 0.486478 tig0041764:+4972 None:intergenic
GTATCATCAAAGCTTCTTGA+GGG 0.492116 tig0041764:+4750 None:intergenic
CTTGATCTTTCTAATTCCGA+TGG 0.493134 tig0041764:-5981 Msa1461840:CDS
TGTTCCATGTTCAAAGTCCT+AGG 0.493353 tig0041764:+6008 None:intergenic
ATGGCGGAGATGATGGCGTT+GGG 0.501964 tig0041764:+6326 None:intergenic
GGAAGCGCGGTGACGGTGGT+TGG 0.503525 tig0041764:+5055 None:intergenic
AATTAGTAGAAAGACTCAAT+TGG 0.503887 tig0041764:-4660 Msa1461840:CDS
GCTTCCTATGGCGGAGATGA+TGG 0.507003 tig0041764:+6319 None:intergenic
CACCTCACGTGCAGACTCGT+TGG 0.508185 tig0041764:+6173 None:intergenic
TTGTTGATCTTCACATTGGG+TGG 0.508424 tig0041764:-4811 Msa1461840:CDS
TTATCTATAAGTGGTTCCAA+TGG 0.509254 tig0041764:-4911 Msa1461840:CDS
GACGTCGGGAAGCGCGGTGA+CGG 0.509701 tig0041764:+5048 None:intergenic
TCCGCCACATCAAGAGCTGC+CGG 0.512954 tig0041764:+6104 None:intergenic
AGCTTCTTGAGGGAGCTTGT+TGG 0.517538 tig0041764:+4760 None:intergenic
TGGCGATGGTGGCACAGCCT+AGG 0.518030 tig0041764:+6378 None:intergenic
GGTCCACTTACAAATTGAAC+GGG 0.518152 tig0041764:+5951 None:intergenic
GGCCGCGTTTCGTGTGACGT+CGG 0.518232 tig0041764:+5033 None:intergenic
CTTAAGATGCATAGACCCAT+TGG 0.520577 tig0041764:+4895 None:intergenic
CCATAGATTCTTACACTGGC+TGG 0.521540 tig0041764:+6251 None:intergenic
GTATGTGGTTGCATCACCCT+AGG 0.522961 tig0041764:-6025 Msa1461840:CDS
AAGCCAGAGTTGGATGCTCT+TGG 0.523659 tig0041764:-5142 Msa1461840:CDS
GCACCAAGAGCATCCAACTC+TGG 0.523813 tig0041764:+5139 None:intergenic
ACAATATATAGATATGTATC+CGG 0.524200 tig0041764:-4558 Msa1461840:three_prime_UTR
AAAAGGCCATGCTAGCAACC+AGG 0.524879 tig0041764:+4419 None:intergenic
ATCCATAAACTGCACACCAT+TGG 0.527926 tig0041764:+6052 None:intergenic
AGTTTATGGATGGTTGTATG+TGG 0.530031 tig0041764:-6040 Msa1461840:CDS
TGGTGCATCCTTATGGGCAA+AGG 0.534190 tig0041764:-5089 Msa1461840:CDS
GTGCCCTTGGTGACTTAGCA+TGG 0.534689 tig0041764:-5120 Msa1461840:CDS
TTTGGATCCAAACACACACT+TGG 0.535582 tig0041764:+4516 None:intergenic
AAACCTGTTTCCTTATAGCT+AGG 0.537230 tig0041764:-4599 Msa1461840:exon
TATGGCGGAGATGATGGCGT+TGG 0.538344 tig0041764:+6325 None:intergenic
CATTAGAGTAAAGCCAGAGT+TGG 0.540850 tig0041764:-5152 Msa1461840:CDS
TATCTATAAGTGGTTCCAAT+GGG 0.541220 tig0041764:-4910 Msa1461840:CDS
GCCGGCAGCTCTTGATGTGG+CGG 0.542894 tig0041764:-6105 Msa1461840:CDS
GTCGGGAAGCGCGGTGACGG+TGG 0.543015 tig0041764:+5051 None:intergenic
AACGAGTCTGCACGTGAGGT+GGG 0.545992 tig0041764:-6171 Msa1461840:CDS
GGTGCATCCTTATGGGCAAA+GGG 0.546980 tig0041764:-5088 Msa1461840:CDS
ATAGATAACAATTATGTCCC+TGG 0.547312 tig0041764:-4437 Msa1461840:three_prime_UTR
TCCCAACGAGTCTGCACGTG+AGG 0.549930 tig0041764:-6175 Msa1461840:CDS
GACGTCACACGAAACGCGGC+CGG 0.553374 tig0041764:-5031 Msa1461840:CDS
TGTATCATCAAAGCTTCTTG+AGG 0.553516 tig0041764:+4749 None:intergenic
TCCATGGACTTATCTATAAG+TGG 0.554506 tig0041764:-4920 Msa1461840:CDS
AAATTTGTTGATCTTCACAT+TGG 0.555127 tig0041764:-4815 Msa1461840:CDS
ACGTGCAGACTCGTTGGGAG+AGG 0.559746 tig0041764:+6179 None:intergenic
GACTTAGCATGGTACTGCAT+TGG 0.559827 tig0041764:-5109 Msa1461840:CDS
GGGAGTGAGAGTAATGGCTC+TGG 0.562162 tig0041764:+6346 None:intergenic
AAGCACTAGTCTCCTTGTAT+GGG 0.562955 tig0041764:+4861 None:intergenic
TGGTAGCTATGATGAGGTTG+TGG 0.572449 tig0041764:-6231 Msa1461840:CDS
AATGGTGTGCAGTTTATGGA+TGG 0.573112 tig0041764:-6050 Msa1461840:CDS
TCACCCTAGGACTTTGAACA+TGG 0.579802 tig0041764:-6012 Msa1461840:CDS
GAGTAAGAAGAAGCATGTGC+TGG 0.587416 tig0041764:-6135 Msa1461840:CDS
TCGTGTGACGTCGGGAAGCG+CGG 0.588189 tig0041764:+5042 None:intergenic
GTACTCAATATATATTTCTG+TGG 0.588609 tig0041764:+4469 None:intergenic
GGGTCCACTTACAAATTGAA+CGG 0.596830 tig0041764:+5950 None:intergenic
AACGCCATCATCTCCGCCAT+AGG 0.597780 tig0041764:-6323 Msa1461840:CDS
GGACTTCATAATCCCATACA+AGG 0.597873 tig0041764:-4873 Msa1461840:CDS
TAAGAAGAAGCATGTGCTGG+TGG 0.600324 tig0041764:-6132 Msa1461840:CDS
TCCCGACGTCACACGAAACG+CGG 0.601248 tig0041764:-5035 Msa1461840:CDS
TTAGAAGCTTGTGAGGCCAA+TGG 0.602079 tig0041764:-6068 Msa1461840:CDS
AGGAAGCCGCTCCATATCAA+AGG 0.605041 tig0041764:-6303 Msa1461840:CDS
TTTGATCTTAGAAGCTTGTG+AGG 0.608724 tig0041764:-6075 Msa1461840:CDS
GAAGCCGGCAGCTCTTGATG+TGG 0.611028 tig0041764:-6108 Msa1461840:CDS
GCTACCATAGATTCTTACAC+TGG 0.617062 tig0041764:+6247 None:intergenic
GTTCCATGTTCAAAGTCCTA+GGG 0.618905 tig0041764:+6009 None:intergenic
AAAGGCCATGCTAGCAACCA+GGG 0.623153 tig0041764:+4420 None:intergenic
TTGATGCCTTTGATATGGAG+CGG 0.624795 tig0041764:+6297 None:intergenic
ACCACTTATAGATAAGTCCA+TGG 0.629957 tig0041764:+4919 None:intergenic
CACATGCTTCTTCTTACTCG+CGG 0.630145 tig0041764:+6139 None:intergenic
TGTGATTGATAATATGACTC+CGG 0.634032 tig0041764:+5012 None:intergenic
TATGGAGCGGCTTCCTATGG+CGG 0.636562 tig0041764:+6310 None:intergenic
AATCTATGGTAGCTATGATG+AGG 0.644571 tig0041764:-6237 Msa1461840:CDS
TTGAACGGGTCCAATACCAT+CGG 0.652449 tig0041764:+5965 None:intergenic
GAGTCTGCACGTGAGGTGGG+CGG 0.653603 tig0041764:-6168 Msa1461840:CDS
TAGCTATGATGAGGTTGTGG+AGG 0.660081 tig0041764:-6228 Msa1461840:CDS
GGTTGTGGAGGATTCAGGTG+TGG 0.667223 tig0041764:-6216 Msa1461840:CDS
AGTACCATGCTAAGTCACCA+AGG 0.689002 tig0041764:+5116 None:intergenic
GTACCATGCTAAGTCACCAA+GGG 0.692891 tig0041764:+5117 None:intergenic
GGCGTTGGGAGTGAGAGTAA+TGG 0.702980 tig0041764:+6340 None:intergenic
TGGGTGGAATGTGAGACCAG+AGG 0.750850 tig0041764:-4795 Msa1461840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAGATATAATGAAATA+GGG + tig0041764:4953-4972 None:intergenic 10.0%
!! TATATAAGATATAATGAAAT+AGG + tig0041764:4954-4973 None:intergenic 10.0%
!! TGAACTAAAAAAAAATATTT+AGG - tig0041764:5421-5440 Msa1461840:intron 10.0%
!! AAAAAAATATTTAGGAAATT+TGG - tig0041764:5429-5448 Msa1461840:intron 10.0%
!!! TTATTTTATCAAATTTTATC+CGG + tig0041764:6343-6362 None:intergenic 10.0%
!! ATATAAGATATAATGAAATA+GGG + tig0041764:4953-4972 None:intergenic 10.0%
!! TATATAAGATATAATGAAAT+AGG + tig0041764:4954-4973 None:intergenic 10.0%
!! TGAACTAAAAAAAAATATTT+AGG - tig0041764:5421-5440 Msa1461840:intron 10.0%
!! AAAAAAATATTTAGGAAATT+TGG - tig0041764:5429-5448 Msa1461840:intron 10.0%
!!! TTATTTTATCAAATTTTATC+CGG + tig0041764:6343-6362 None:intergenic 10.0%
!! TATAAGATATAATGAAATAG+GGG + tig0041764:4952-4971 None:intergenic 15.0%
!!! AAACTCTAAATTTGTTTATA+AGG - tig0041764:4987-5006 Msa1461840:CDS 15.0%
!! AGAAAAAAAAAAAAACAGTT+TGG - tig0041764:5292-5311 Msa1461840:intron 15.0%
!! TATAAGATATAATGAAATAG+GGG + tig0041764:4952-4971 None:intergenic 15.0%
!!! AAACTCTAAATTTGTTTATA+AGG - tig0041764:4987-5006 Msa1461840:CDS 15.0%
!! AGAAAAAAAAAAAAACAGTT+TGG - tig0041764:5292-5311 Msa1461840:intron 15.0%
!! TACAAGTATTTAGGTAAATT+TGG - tig0041764:5034-5053 Msa1461840:CDS 20.0%
!!! ATTTAGGTAAATTTGGAATA+TGG - tig0041764:5041-5060 Msa1461840:CDS 20.0%
!!! CAATGTTTAAATTTTGACAA+AGG - tig0041764:5149-5168 Msa1461840:CDS 20.0%
!! CATACTAACAATTTAAATCT+TGG - tig0041764:5197-5216 Msa1461840:CDS 20.0%
!! AAAAAAAAAAAACAGTTTGG+TGG - tig0041764:5295-5314 Msa1461840:intron 20.0%
!! GAAATTTGGATATAAAATTG+AGG - tig0041764:5443-5462 Msa1461840:intron 20.0%
!! ACAATATATAGATATGTATC+CGG - tig0041764:6321-6340 Msa1461840:CDS 20.0%
!! TACAAGTATTTAGGTAAATT+TGG - tig0041764:5034-5053 Msa1461840:CDS 20.0%
!!! ATTTAGGTAAATTTGGAATA+TGG - tig0041764:5041-5060 Msa1461840:CDS 20.0%
!!! CAATGTTTAAATTTTGACAA+AGG - tig0041764:5149-5168 Msa1461840:CDS 20.0%
!! CATACTAACAATTTAAATCT+TGG - tig0041764:5197-5216 Msa1461840:CDS 20.0%
!! AAAAAAAAAAAACAGTTTGG+TGG - tig0041764:5295-5314 Msa1461840:intron 20.0%
!! GAAATTTGGATATAAAATTG+AGG - tig0041764:5443-5462 Msa1461840:intron 20.0%
!! ACAATATATAGATATGTATC+CGG - tig0041764:6321-6340 Msa1461840:CDS 20.0%
!!! AAATTTTGATGCCTTTGATA+TGG + tig0041764:4590-4609 None:intergenic 25.0%
! CTAACAATTTAAATCTTGGT+AGG - tig0041764:5201-5220 Msa1461840:CDS 25.0%
! TAATATTATTCGAGACATGA+CGG + tig0041764:5249-5268 None:intergenic 25.0%
! ATATTTGCAACTGTTTGATT+TGG + tig0041764:5914-5933 None:intergenic 25.0%
!!! AAATTTGTTGATCTTCACAT+TGG - tig0041764:6064-6083 Msa1461840:CDS 25.0%
!!! AATTTGTTGATCTTCACATT+GGG - tig0041764:6065-6084 Msa1461840:CDS 25.0%
! TTGCAAGTATTAGAGATTAT+GGG - tig0041764:6170-6189 Msa1461840:CDS 25.0%
! AATTAGTAGAAAGACTCAAT+TGG - tig0041764:6219-6238 Msa1461840:CDS 25.0%
!! TGATTTTGTCAAACTAACTT+TGG + tig0041764:6384-6403 None:intergenic 25.0%
!! GTACTCAATATATATTTCTG+TGG + tig0041764:6413-6432 None:intergenic 25.0%
!!! AAATTTTGATGCCTTTGATA+TGG + tig0041764:4590-4609 None:intergenic 25.0%
! CTAACAATTTAAATCTTGGT+AGG - tig0041764:5201-5220 Msa1461840:CDS 25.0%
! TAATATTATTCGAGACATGA+CGG + tig0041764:5249-5268 None:intergenic 25.0%
! ATATTTGCAACTGTTTGATT+TGG + tig0041764:5914-5933 None:intergenic 25.0%
!!! AAATTTGTTGATCTTCACAT+TGG - tig0041764:6064-6083 Msa1461840:CDS 25.0%
!!! AATTTGTTGATCTTCACATT+GGG - tig0041764:6065-6084 Msa1461840:CDS 25.0%
! TTGCAAGTATTAGAGATTAT+GGG - tig0041764:6170-6189 Msa1461840:CDS 25.0%
! AATTAGTAGAAAGACTCAAT+TGG - tig0041764:6219-6238 Msa1461840:CDS 25.0%
!! TGATTTTGTCAAACTAACTT+TGG + tig0041764:6384-6403 None:intergenic 25.0%
!! GTACTCAATATATATTTCTG+TGG + tig0041764:6413-6432 None:intergenic 25.0%
!! ATCTTTCGCAGTCATTTTAT+GGG + tig0041764:4464-4483 None:intergenic 30.0%
!! TATCTTTCGCAGTCATTTTA+TGG + tig0041764:4465-4484 None:intergenic 30.0%
CCTAAATACTTGTAGTATAC+TGG + tig0041764:5028-5047 None:intergenic 30.0%
CCAGTATACTACAAGTATTT+AGG - tig0041764:5025-5044 Msa1461840:CDS 30.0%
! GGTAAATTTGGAATATGGAT+CGG - tig0041764:5046-5065 Msa1461840:CDS 30.0%
! GTAAATTTGGAATATGGATC+GGG - tig0041764:5047-5066 Msa1461840:CDS 30.0%
TACAACAAGTGAAAGAGATT+AGG - tig0041764:5267-5286 Msa1461840:intron 30.0%
ACAACAAGTGAAAGAGATTA+GGG - tig0041764:5268-5287 Msa1461840:intron 30.0%
! AAAAAAACAGTTTGGTGGTT+TGG - tig0041764:5300-5319 Msa1461840:intron 30.0%
! AAAAAACAGTTTGGTGGTTT+GGG - tig0041764:5301-5320 Msa1461840:intron 30.0%
ATAGCTAACAACTATCATTG+AGG - tig0041764:5487-5506 Msa1461840:intron 30.0%
! TGTGATTGATAATATGACTC+CGG + tig0041764:5870-5889 None:intergenic 30.0%
AATCACATCTTCTTTGCAAT+GGG - tig0041764:5883-5902 Msa1461840:intron 30.0%
TTATCTATAAGTGGTTCCAA+TGG - tig0041764:5968-5987 Msa1461840:CDS 30.0%
TATCTATAAGTGGTTCCAAT+GGG - tig0041764:5969-5988 Msa1461840:CDS 30.0%
GTTGCAAGTATTAGAGATTA+TGG - tig0041764:6169-6188 Msa1461840:CDS 30.0%
TGAGTCTTTCTACTAATTTC+TGG + tig0041764:6217-6236 None:intergenic 30.0%
TTGTAAACTACCTAGCTATA+AGG + tig0041764:6293-6312 None:intergenic 30.0%
AAAATAACCAAGTGTGTGTT+TGG - tig0041764:6356-6375 Msa1461840:CDS 30.0%
ATAGATAACAATTATGTCCC+TGG - tig0041764:6442-6461 Msa1461840:five_prime_UTR 30.0%
!! ATCTTTCGCAGTCATTTTAT+GGG + tig0041764:4464-4483 None:intergenic 30.0%
!! TATCTTTCGCAGTCATTTTA+TGG + tig0041764:4465-4484 None:intergenic 30.0%
CCTAAATACTTGTAGTATAC+TGG + tig0041764:5028-5047 None:intergenic 30.0%
CCAGTATACTACAAGTATTT+AGG - tig0041764:5025-5044 Msa1461840:CDS 30.0%
! GGTAAATTTGGAATATGGAT+CGG - tig0041764:5046-5065 Msa1461840:CDS 30.0%
! GTAAATTTGGAATATGGATC+GGG - tig0041764:5047-5066 Msa1461840:CDS 30.0%
TACAACAAGTGAAAGAGATT+AGG - tig0041764:5267-5286 Msa1461840:intron 30.0%
ACAACAAGTGAAAGAGATTA+GGG - tig0041764:5268-5287 Msa1461840:intron 30.0%
! AAAAAAACAGTTTGGTGGTT+TGG - tig0041764:5300-5319 Msa1461840:intron 30.0%
! AAAAAACAGTTTGGTGGTTT+GGG - tig0041764:5301-5320 Msa1461840:intron 30.0%
ATAGCTAACAACTATCATTG+AGG - tig0041764:5487-5506 Msa1461840:intron 30.0%
! TGTGATTGATAATATGACTC+CGG + tig0041764:5870-5889 None:intergenic 30.0%
AATCACATCTTCTTTGCAAT+GGG - tig0041764:5883-5902 Msa1461840:intron 30.0%
TTATCTATAAGTGGTTCCAA+TGG - tig0041764:5968-5987 Msa1461840:CDS 30.0%
TATCTATAAGTGGTTCCAAT+GGG - tig0041764:5969-5988 Msa1461840:CDS 30.0%
GTTGCAAGTATTAGAGATTA+TGG - tig0041764:6169-6188 Msa1461840:CDS 30.0%
TGAGTCTTTCTACTAATTTC+TGG + tig0041764:6217-6236 None:intergenic 30.0%
TTGTAAACTACCTAGCTATA+AGG + tig0041764:6293-6312 None:intergenic 30.0%
AAAATAACCAAGTGTGTGTT+TGG - tig0041764:6356-6375 Msa1461840:CDS 30.0%
ATAGATAACAATTATGTCCC+TGG - tig0041764:6442-6461 Msa1461840:five_prime_UTR 30.0%
AATCTATGGTAGCTATGATG+AGG - tig0041764:4642-4661 Msa1461840:CDS 35.0%
TTTGATCTTAGAAGCTTGTG+AGG - tig0041764:4804-4823 Msa1461840:CDS 35.0%
AGTTTATGGATGGTTGTATG+TGG - tig0041764:4839-4858 Msa1461840:CDS 35.0%
CTTGATCTTTCTAATTCCGA+TGG - tig0041764:4898-4917 Msa1461840:CDS 35.0%
CTTTCTAATTCCGATGGTAT+TGG - tig0041764:4904-4923 Msa1461840:CDS 35.0%
CAACAAGTGAAAGAGATTAG+GGG - tig0041764:5269-5288 Msa1461840:intron 35.0%
! AAAAACAGTTTGGTGGTTTG+GGG - tig0041764:5302-5321 Msa1461840:intron 35.0%
! TCCAAGAATTCTTGAGTTGT+TGG + tig0041764:5701-5720 None:intergenic 35.0%
CAATCACATCTTCTTTGCAA+TGG - tig0041764:5882-5901 Msa1461840:intron 35.0%
!! TTGCAACTGTTTGATTTGGT+TGG + tig0041764:5910-5929 None:intergenic 35.0%
TCCATGGACTTATCTATAAG+TGG - tig0041764:5959-5978 Msa1461840:intron 35.0%
ACCACTTATAGATAAGTCCA+TGG + tig0041764:5963-5982 None:intergenic 35.0%
! GCTTCATTTGACTTCACATT+TGG - tig0041764:6037-6056 Msa1461840:CDS 35.0%
GTATCATCAAAGCTTCTTGA+GGG + tig0041764:6132-6151 None:intergenic 35.0%
TGTATCATCAAAGCTTCTTG+AGG + tig0041764:6133-6152 None:intergenic 35.0%
! TGATGATACAAGAGTTTGCT+AGG - tig0041764:6143-6162 Msa1461840:CDS 35.0%
!!! ATTTCTGGCCATTTTGTAGA+AGG + tig0041764:6202-6221 None:intergenic 35.0%
!! GTGAAAAAGTCTTTAGAGCT+TGG - tig0041764:6253-6272 Msa1461840:CDS 35.0%
AAACCTGTTTCCTTATAGCT+AGG - tig0041764:6280-6299 Msa1461840:CDS 35.0%
AATCTATGGTAGCTATGATG+AGG - tig0041764:4642-4661 Msa1461840:CDS 35.0%
TTTGATCTTAGAAGCTTGTG+AGG - tig0041764:4804-4823 Msa1461840:CDS 35.0%
AGTTTATGGATGGTTGTATG+TGG - tig0041764:4839-4858 Msa1461840:CDS 35.0%
CTTGATCTTTCTAATTCCGA+TGG - tig0041764:4898-4917 Msa1461840:CDS 35.0%
CTTTCTAATTCCGATGGTAT+TGG - tig0041764:4904-4923 Msa1461840:CDS 35.0%
CAACAAGTGAAAGAGATTAG+GGG - tig0041764:5269-5288 Msa1461840:intron 35.0%
! AAAAACAGTTTGGTGGTTTG+GGG - tig0041764:5302-5321 Msa1461840:intron 35.0%
! TCCAAGAATTCTTGAGTTGT+TGG + tig0041764:5701-5720 None:intergenic 35.0%
CAATCACATCTTCTTTGCAA+TGG - tig0041764:5882-5901 Msa1461840:intron 35.0%
!! TTGCAACTGTTTGATTTGGT+TGG + tig0041764:5910-5929 None:intergenic 35.0%
TCCATGGACTTATCTATAAG+TGG - tig0041764:5959-5978 Msa1461840:intron 35.0%
ACCACTTATAGATAAGTCCA+TGG + tig0041764:5963-5982 None:intergenic 35.0%
! GCTTCATTTGACTTCACATT+TGG - tig0041764:6037-6056 Msa1461840:CDS 35.0%
GTATCATCAAAGCTTCTTGA+GGG + tig0041764:6132-6151 None:intergenic 35.0%
TGTATCATCAAAGCTTCTTG+AGG + tig0041764:6133-6152 None:intergenic 35.0%
! TGATGATACAAGAGTTTGCT+AGG - tig0041764:6143-6162 Msa1461840:CDS 35.0%
!!! ATTTCTGGCCATTTTGTAGA+AGG + tig0041764:6202-6221 None:intergenic 35.0%
!! GTGAAAAAGTCTTTAGAGCT+TGG - tig0041764:6253-6272 Msa1461840:CDS 35.0%
AAACCTGTTTCCTTATAGCT+AGG - tig0041764:6280-6299 Msa1461840:CDS 35.0%
TTGATGCCTTTGATATGGAG+CGG + tig0041764:4585-4604 None:intergenic 40.0%
GCTACCATAGATTCTTACAC+TGG + tig0041764:4635-4654 None:intergenic 40.0%
ATCCATAAACTGCACACCAT+TGG + tig0041764:4830-4849 None:intergenic 40.0%
AATGGTGTGCAGTTTATGGA+TGG - tig0041764:4829-4848 Msa1461840:CDS 40.0%
GTTCCATGTTCAAAGTCCTA+GGG + tig0041764:4873-4892 None:intergenic 40.0%
TGTTCCATGTTCAAAGTCCT+AGG + tig0041764:4874-4893 None:intergenic 40.0%
GGTCCACTTACAAATTGAAC+GGG + tig0041764:4931-4950 None:intergenic 40.0%
GGGTCCACTTACAAATTGAA+CGG + tig0041764:4932-4951 None:intergenic 40.0%
! AAAACAGTTTGGTGGTTTGG+GGG - tig0041764:5303-5322 Msa1461840:intron 40.0%
TGGGGGAATAACATAAGAGT+TGG - tig0041764:5320-5339 Msa1461840:intron 40.0%
TTGGCATTGTTGATGTGCTA+TGG + tig0041764:5682-5701 None:intergenic 40.0%
GCCAACAACTCAAGAATTCT+TGG - tig0041764:5697-5716 Msa1461840:intron 40.0%
CATTAGAGTAAAGCCAGAGT+TGG - tig0041764:5727-5746 Msa1461840:intron 40.0%
ATTTCTTTCTCACACGTCCA+TGG - tig0041764:5943-5962 Msa1461840:intron 40.0%
CTTAAGATGCATAGACCCAT+TGG + tig0041764:5987-6006 None:intergenic 40.0%
CAATGGGTCTATGCATCTTA+AGG - tig0041764:5985-6004 Msa1461840:CDS 40.0%
GGACTTCATAATCCCATACA+AGG - tig0041764:6006-6025 Msa1461840:CDS 40.0%
! AAGCACTAGTCTCCTTGTAT+GGG + tig0041764:6021-6040 None:intergenic 40.0%
TTGTTGATCTTCACATTGGG+TGG - tig0041764:6068-6087 Msa1461840:CDS 40.0%
CTACCTAGCTATAAGGAAAC+AGG + tig0041764:6286-6305 None:intergenic 40.0%
TTTGGATCCAAACACACACT+TGG + tig0041764:6366-6385 None:intergenic 40.0%
TTGATGCCTTTGATATGGAG+CGG + tig0041764:4585-4604 None:intergenic 40.0%
GCTACCATAGATTCTTACAC+TGG + tig0041764:4635-4654 None:intergenic 40.0%
ATCCATAAACTGCACACCAT+TGG + tig0041764:4830-4849 None:intergenic 40.0%
AATGGTGTGCAGTTTATGGA+TGG - tig0041764:4829-4848 Msa1461840:CDS 40.0%
GTTCCATGTTCAAAGTCCTA+GGG + tig0041764:4873-4892 None:intergenic 40.0%
TGTTCCATGTTCAAAGTCCT+AGG + tig0041764:4874-4893 None:intergenic 40.0%
GGTCCACTTACAAATTGAAC+GGG + tig0041764:4931-4950 None:intergenic 40.0%
GGGTCCACTTACAAATTGAA+CGG + tig0041764:4932-4951 None:intergenic 40.0%
! AAAACAGTTTGGTGGTTTGG+GGG - tig0041764:5303-5322 Msa1461840:intron 40.0%
TGGGGGAATAACATAAGAGT+TGG - tig0041764:5320-5339 Msa1461840:intron 40.0%
TTGGCATTGTTGATGTGCTA+TGG + tig0041764:5682-5701 None:intergenic 40.0%
GCCAACAACTCAAGAATTCT+TGG - tig0041764:5697-5716 Msa1461840:intron 40.0%
CATTAGAGTAAAGCCAGAGT+TGG - tig0041764:5727-5746 Msa1461840:intron 40.0%
ATTTCTTTCTCACACGTCCA+TGG - tig0041764:5943-5962 Msa1461840:intron 40.0%
CTTAAGATGCATAGACCCAT+TGG + tig0041764:5987-6006 None:intergenic 40.0%
CAATGGGTCTATGCATCTTA+AGG - tig0041764:5985-6004 Msa1461840:CDS 40.0%
GGACTTCATAATCCCATACA+AGG - tig0041764:6006-6025 Msa1461840:CDS 40.0%
! AAGCACTAGTCTCCTTGTAT+GGG + tig0041764:6021-6040 None:intergenic 40.0%
TTGTTGATCTTCACATTGGG+TGG - tig0041764:6068-6087 Msa1461840:CDS 40.0%
CTACCTAGCTATAAGGAAAC+AGG + tig0041764:6286-6305 None:intergenic 40.0%
TTTGGATCCAAACACACACT+TGG + tig0041764:6366-6385 None:intergenic 40.0%
! GCGAAAGATACAGTGCGTTT+TGG - tig0041764:4475-4494 Msa1461840:three_prime_UTR 45.0%
!!! AATGGCTCTGGCTAGTTTTC+TGG + tig0041764:4524-4543 None:intergenic 45.0%
! GGCTGGTAAACTGTTTTCGA+CGG + tig0041764:4614-4633 None:intergenic 45.0%
CCATAGATTCTTACACTGGC+TGG + tig0041764:4631-4650 None:intergenic 45.0%
CCAGCCAGTGTAAGAATCTA+TGG - tig0041764:4628-4647 Msa1461840:CDS 45.0%
TGGTAGCTATGATGAGGTTG+TGG - tig0041764:4648-4667 Msa1461840:CDS 45.0%
TAGCTATGATGAGGTTGTGG+AGG - tig0041764:4651-4670 Msa1461840:CDS 45.0%
CACATGCTTCTTCTTACTCG+CGG + tig0041764:4743-4762 None:intergenic 45.0%
! GAGTAAGAAGAAGCATGTGC+TGG - tig0041764:4744-4763 Msa1461840:CDS 45.0%
! TAAGAAGAAGCATGTGCTGG+TGG - tig0041764:4747-4766 Msa1461840:CDS 45.0%
TTAGAAGCTTGTGAGGCCAA+TGG - tig0041764:4811-4830 Msa1461840:CDS 45.0%
TCACCCTAGGACTTTGAACA+TGG - tig0041764:4867-4886 Msa1461840:CDS 45.0%
TTGAACGGGTCCAATACCAT+CGG + tig0041764:4917-4936 None:intergenic 45.0%
GGACCCGTTCAATTTGTAAG+TGG - tig0041764:4925-4944 Msa1461840:CDS 45.0%
AAAACTAGACCCCAACAACG+TGG - tig0041764:5081-5100 Msa1461840:CDS 45.0%
CGATGCTGACAAGGGATTAA+AGG - tig0041764:5108-5127 Msa1461840:CDS 45.0%
GTACCATGCTAAGTCACCAA+GGG + tig0041764:5765-5784 None:intergenic 45.0%
AGTACCATGCTAAGTCACCA+AGG + tig0041764:5766-5785 None:intergenic 45.0%
GACTTAGCATGGTACTGCAT+TGG - tig0041764:5770-5789 Msa1461840:intron 45.0%
! ACTGCATTGGTGCATCCTTA+TGG - tig0041764:5783-5802 Msa1461840:intron 45.0%
! CTGCATTGGTGCATCCTTAT+GGG - tig0041764:5784-5803 Msa1461840:intron 45.0%
! GAAGCACTAGTCTCCTTGTA+TGG + tig0041764:6022-6041 None:intergenic 45.0%
TTGGCAACATGAACTTCCTC+TGG + tig0041764:6103-6122 None:intergenic 45.0%
GGTCTCAGCCTTCTACAAAA+TGG - tig0041764:6191-6210 Msa1461840:CDS 45.0%
! GCGAAAGATACAGTGCGTTT+TGG - tig0041764:4475-4494 Msa1461840:three_prime_UTR 45.0%
!!! AATGGCTCTGGCTAGTTTTC+TGG + tig0041764:4524-4543 None:intergenic 45.0%
! GGCTGGTAAACTGTTTTCGA+CGG + tig0041764:4614-4633 None:intergenic 45.0%
CCATAGATTCTTACACTGGC+TGG + tig0041764:4631-4650 None:intergenic 45.0%
CCAGCCAGTGTAAGAATCTA+TGG - tig0041764:4628-4647 Msa1461840:CDS 45.0%
TGGTAGCTATGATGAGGTTG+TGG - tig0041764:4648-4667 Msa1461840:CDS 45.0%
TAGCTATGATGAGGTTGTGG+AGG - tig0041764:4651-4670 Msa1461840:CDS 45.0%
CACATGCTTCTTCTTACTCG+CGG + tig0041764:4743-4762 None:intergenic 45.0%
! GAGTAAGAAGAAGCATGTGC+TGG - tig0041764:4744-4763 Msa1461840:CDS 45.0%
! TAAGAAGAAGCATGTGCTGG+TGG - tig0041764:4747-4766 Msa1461840:CDS 45.0%
TTAGAAGCTTGTGAGGCCAA+TGG - tig0041764:4811-4830 Msa1461840:CDS 45.0%
TCACCCTAGGACTTTGAACA+TGG - tig0041764:4867-4886 Msa1461840:CDS 45.0%
TTGAACGGGTCCAATACCAT+CGG + tig0041764:4917-4936 None:intergenic 45.0%
GGACCCGTTCAATTTGTAAG+TGG - tig0041764:4925-4944 Msa1461840:CDS 45.0%
AAAACTAGACCCCAACAACG+TGG - tig0041764:5081-5100 Msa1461840:CDS 45.0%
CGATGCTGACAAGGGATTAA+AGG - tig0041764:5108-5127 Msa1461840:CDS 45.0%
GTACCATGCTAAGTCACCAA+GGG + tig0041764:5765-5784 None:intergenic 45.0%
AGTACCATGCTAAGTCACCA+AGG + tig0041764:5766-5785 None:intergenic 45.0%
GACTTAGCATGGTACTGCAT+TGG - tig0041764:5770-5789 Msa1461840:intron 45.0%
! ACTGCATTGGTGCATCCTTA+TGG - tig0041764:5783-5802 Msa1461840:intron 45.0%
! CTGCATTGGTGCATCCTTAT+GGG - tig0041764:5784-5803 Msa1461840:intron 45.0%
! GAAGCACTAGTCTCCTTGTA+TGG + tig0041764:6022-6041 None:intergenic 45.0%
TTGGCAACATGAACTTCCTC+TGG + tig0041764:6103-6122 None:intergenic 45.0%
GGTCTCAGCCTTCTACAAAA+TGG - tig0041764:6191-6210 Msa1461840:CDS 45.0%
!! TTAAAAAAAAAAATATTAGT+TGG + tig0041764:5394-5413 None:intergenic 5.0%
!! TTAAAAAAAAAAATATTAGT+TGG + tig0041764:5394-5413 None:intergenic 5.0%
!! ACAGTGCGTTTTGGCATCCT+AGG - tig0041764:4484-4503 Msa1461840:three_prime_UTR 50.0%
!!! TCTGGCTAGTTTTCTGGCGA+TGG + tig0041764:4518-4537 None:intergenic 50.0%
TGATATGGAGCGGCTTCCTA+TGG + tig0041764:4575-4594 None:intergenic 50.0%
AGGAAGCCGCTCCATATCAA+AGG - tig0041764:4576-4595 Msa1461840:three_prime_UTR 50.0%
GATGAGGTTGTGGAGGATTC+AGG - tig0041764:4658-4677 Msa1461840:CDS 50.0%
GGCCAATGGTGTGCAGTTTA+TGG - tig0041764:4825-4844 Msa1461840:CDS 50.0%
GTATGTGGTTGCATCACCCT+AGG - tig0041764:4854-4873 Msa1461840:CDS 50.0%
CATCGTTTGCCACGTTGTTG+GGG + tig0041764:5093-5112 None:intergenic 50.0%
GCATCGTTTGCCACGTTGTT+GGG + tig0041764:5094-5113 None:intergenic 50.0%
AGCATCGTTTGCCACGTTGT+TGG + tig0041764:5095-5114 None:intergenic 50.0%
GTGGCAAACGATGCTGACAA+GGG - tig0041764:5100-5119 Msa1461840:CDS 50.0%
TCATTGAGGTCTAGCGCAAG+TGG - tig0041764:5501-5520 Msa1461840:intron 50.0%
AAGCCAGAGTTGGATGCTCT+TGG - tig0041764:5737-5756 Msa1461840:intron 50.0%
TGGTGCATCCTTATGGGCAA+AGG - tig0041764:5790-5809 Msa1461840:intron 50.0%
GGTGCATCCTTATGGGCAAA+GGG - tig0041764:5791-5810 Msa1461840:intron 50.0%
CTTGTAGCCCTTTGCCCATA+AGG + tig0041764:5801-5820 None:intergenic 50.0%
AGCTTCTTGAGGGAGCTTGT+TGG + tig0041764:6122-6141 None:intergenic 50.0%
!! ACAGTGCGTTTTGGCATCCT+AGG - tig0041764:4484-4503 Msa1461840:three_prime_UTR 50.0%
!!! TCTGGCTAGTTTTCTGGCGA+TGG + tig0041764:4518-4537 None:intergenic 50.0%
TGATATGGAGCGGCTTCCTA+TGG + tig0041764:4575-4594 None:intergenic 50.0%
AGGAAGCCGCTCCATATCAA+AGG - tig0041764:4576-4595 Msa1461840:three_prime_UTR 50.0%
GATGAGGTTGTGGAGGATTC+AGG - tig0041764:4658-4677 Msa1461840:CDS 50.0%
GGCCAATGGTGTGCAGTTTA+TGG - tig0041764:4825-4844 Msa1461840:CDS 50.0%
GTATGTGGTTGCATCACCCT+AGG - tig0041764:4854-4873 Msa1461840:CDS 50.0%
CATCGTTTGCCACGTTGTTG+GGG + tig0041764:5093-5112 None:intergenic 50.0%
GCATCGTTTGCCACGTTGTT+GGG + tig0041764:5094-5113 None:intergenic 50.0%
AGCATCGTTTGCCACGTTGT+TGG + tig0041764:5095-5114 None:intergenic 50.0%
GTGGCAAACGATGCTGACAA+GGG - tig0041764:5100-5119 Msa1461840:CDS 50.0%
TCATTGAGGTCTAGCGCAAG+TGG - tig0041764:5501-5520 Msa1461840:intron 50.0%
AAGCCAGAGTTGGATGCTCT+TGG - tig0041764:5737-5756 Msa1461840:intron 50.0%
TGGTGCATCCTTATGGGCAA+AGG - tig0041764:5790-5809 Msa1461840:intron 50.0%
GGTGCATCCTTATGGGCAAA+GGG - tig0041764:5791-5810 Msa1461840:intron 50.0%
CTTGTAGCCCTTTGCCCATA+AGG + tig0041764:5801-5820 None:intergenic 50.0%
AGCTTCTTGAGGGAGCTTGT+TGG + tig0041764:6122-6141 None:intergenic 50.0%
!!! GGCTAGTTTTCTGGCGATGG+TGG + tig0041764:4515-4534 None:intergenic 55.0%
GGGAGTGAGAGTAATGGCTC+TGG + tig0041764:4536-4555 None:intergenic 55.0%
! GGCGTTGGGAGTGAGAGTAA+TGG + tig0041764:4542-4561 None:intergenic 55.0%
! ATGGCGGAGATGATGGCGTT+GGG + tig0041764:4556-4575 None:intergenic 55.0%
! TATGGCGGAGATGATGGCGT+TGG + tig0041764:4557-4576 None:intergenic 55.0%
AACGCCATCATCTCCGCCAT+AGG - tig0041764:4556-4575 Msa1461840:three_prime_UTR 55.0%
! GCTTCCTATGGCGGAGATGA+TGG + tig0041764:4563-4582 None:intergenic 55.0%
TATGGAGCGGCTTCCTATGG+CGG + tig0041764:4572-4591 None:intergenic 55.0%
GGTTGTGGAGGATTCAGGTG+TGG - tig0041764:4663-4682 Msa1461840:CDS 55.0%
ACCTCACGTGCAGACTCGTT+GGG + tig0041764:4708-4727 None:intergenic 55.0%
AACGAGTCTGCACGTGAGGT+GGG - tig0041764:4708-4727 Msa1461840:CDS 55.0%
CGTGGCAAACGATGCTGACA+AGG - tig0041764:5099-5118 Msa1461840:CDS 55.0%
!! GCACCAAGAGCATCCAACTC+TGG + tig0041764:5743-5762 None:intergenic 55.0%
!! TTGGATGCTCTTGGTGCCCT+TGG - tig0041764:5746-5765 Msa1461840:intron 55.0%
! GTGCCCTTGGTGACTTAGCA+TGG - tig0041764:5759-5778 Msa1461840:intron 55.0%
TGGGTGGAATGTGAGACCAG+AGG - tig0041764:6084-6103 Msa1461840:CDS 55.0%
!!! GGCTAGTTTTCTGGCGATGG+TGG + tig0041764:4515-4534 None:intergenic 55.0%
GGGAGTGAGAGTAATGGCTC+TGG + tig0041764:4536-4555 None:intergenic 55.0%
! GGCGTTGGGAGTGAGAGTAA+TGG + tig0041764:4542-4561 None:intergenic 55.0%
! ATGGCGGAGATGATGGCGTT+GGG + tig0041764:4556-4575 None:intergenic 55.0%
! TATGGCGGAGATGATGGCGT+TGG + tig0041764:4557-4576 None:intergenic 55.0%
AACGCCATCATCTCCGCCAT+AGG - tig0041764:4556-4575 Msa1461840:three_prime_UTR 55.0%
! GCTTCCTATGGCGGAGATGA+TGG + tig0041764:4563-4582 None:intergenic 55.0%
TATGGAGCGGCTTCCTATGG+CGG + tig0041764:4572-4591 None:intergenic 55.0%
GGTTGTGGAGGATTCAGGTG+TGG - tig0041764:4663-4682 Msa1461840:CDS 55.0%
ACCTCACGTGCAGACTCGTT+GGG + tig0041764:4708-4727 None:intergenic 55.0%
AACGAGTCTGCACGTGAGGT+GGG - tig0041764:4708-4727 Msa1461840:CDS 55.0%
CGTGGCAAACGATGCTGACA+AGG - tig0041764:5099-5118 Msa1461840:CDS 55.0%
!! GCACCAAGAGCATCCAACTC+TGG + tig0041764:5743-5762 None:intergenic 55.0%
!! TTGGATGCTCTTGGTGCCCT+TGG - tig0041764:5746-5765 Msa1461840:intron 55.0%
! GTGCCCTTGGTGACTTAGCA+TGG - tig0041764:5759-5778 Msa1461840:intron 55.0%
TGGGTGGAATGTGAGACCAG+AGG - tig0041764:6084-6103 Msa1461840:CDS 55.0%
ACGTGCAGACTCGTTGGGAG+AGG + tig0041764:4703-4722 None:intergenic 60.0%
TCCCAACGAGTCTGCACGTG+AGG - tig0041764:4704-4723 Msa1461840:CDS 60.0%
CACCTCACGTGCAGACTCGT+TGG + tig0041764:4709-4728 None:intergenic 60.0%
CAACGAGTCTGCACGTGAGG+TGG - tig0041764:4707-4726 Msa1461840:CDS 60.0%
! GCATGTGCTGGTGGAGAAGC+CGG - tig0041764:4756-4775 Msa1461840:CDS 60.0%
GAAGCCGGCAGCTCTTGATG+TGG - tig0041764:4771-4790 Msa1461840:CDS 60.0%
TCCGCCACATCAAGAGCTGC+CGG + tig0041764:4778-4797 None:intergenic 60.0%
TCCCGACGTCACACGAAACG+CGG - tig0041764:5844-5863 Msa1461840:intron 60.0%
ACGTGCAGACTCGTTGGGAG+AGG + tig0041764:4703-4722 None:intergenic 60.0%
TCCCAACGAGTCTGCACGTG+AGG - tig0041764:4704-4723 Msa1461840:CDS 60.0%
CACCTCACGTGCAGACTCGT+TGG + tig0041764:4709-4728 None:intergenic 60.0%
CAACGAGTCTGCACGTGAGG+TGG - tig0041764:4707-4726 Msa1461840:CDS 60.0%
! GCATGTGCTGGTGGAGAAGC+CGG - tig0041764:4756-4775 Msa1461840:CDS 60.0%
GAAGCCGGCAGCTCTTGATG+TGG - tig0041764:4771-4790 Msa1461840:CDS 60.0%
TCCGCCACATCAAGAGCTGC+CGG + tig0041764:4778-4797 None:intergenic 60.0%
TCCCGACGTCACACGAAACG+CGG - tig0041764:5844-5863 Msa1461840:intron 60.0%
! TGGCGATGGTGGCACAGCCT+AGG + tig0041764:4504-4523 None:intergenic 65.0%
GAGTCTGCACGTGAGGTGGG+CGG - tig0041764:4711-4730 Msa1461840:CDS 65.0%
GCCGGCAGCTCTTGATGTGG+CGG - tig0041764:4774-4793 Msa1461840:CDS 65.0%
TCGTGTGACGTCGGGAAGCG+CGG + tig0041764:5840-5859 None:intergenic 65.0%
GCCGCGTTTCGTGTGACGTC+GGG + tig0041764:5848-5867 None:intergenic 65.0%
GGCCGCGTTTCGTGTGACGT+CGG + tig0041764:5849-5868 None:intergenic 65.0%
GACGTCACACGAAACGCGGC+CGG - tig0041764:5848-5867 Msa1461840:intron 65.0%
! TGGCGATGGTGGCACAGCCT+AGG + tig0041764:4504-4523 None:intergenic 65.0%
GAGTCTGCACGTGAGGTGGG+CGG - tig0041764:4711-4730 Msa1461840:CDS 65.0%
GCCGGCAGCTCTTGATGTGG+CGG - tig0041764:4774-4793 Msa1461840:CDS 65.0%
TCGTGTGACGTCGGGAAGCG+CGG + tig0041764:5840-5859 None:intergenic 65.0%
GCCGCGTTTCGTGTGACGTC+GGG + tig0041764:5848-5867 None:intergenic 65.0%
GGCCGCGTTTCGTGTGACGT+CGG + tig0041764:5849-5868 None:intergenic 65.0%
GACGTCACACGAAACGCGGC+CGG - tig0041764:5848-5867 Msa1461840:intron 65.0%
! GGAAGCGCGGTGACGGTGGT+TGG + tig0041764:5827-5846 None:intergenic 70.0%
! GACGTCGGGAAGCGCGGTGA+CGG + tig0041764:5834-5853 None:intergenic 70.0%
! GGAAGCGCGGTGACGGTGGT+TGG + tig0041764:5827-5846 None:intergenic 70.0%
! GACGTCGGGAAGCGCGGTGA+CGG + tig0041764:5834-5853 None:intergenic 70.0%
! GTCGGGAAGCGCGGTGACGG+TGG + tig0041764:5831-5850 None:intergenic 75.0%
! GTCGGGAAGCGCGGTGACGG+TGG + tig0041764:5831-5850 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0041764 gene 4433 6468 4433 ID=Msa1461840;Name=Msa1461840
tig0041764 mRNA 4433 6468 4433 ID=Msa1461840-mRNA-1;Parent=Msa1461840;Name=Msa1461840-mRNA-1;_AED=0.01;_eAED=0.01;_QI=36|1|1|1|1|1|2|171|363
tig0041764 exon 4433 5224 4433 ID=Msa1461840-mRNA-1:exon:23382;Parent=Msa1461840-mRNA-1
tig0041764 exon 5962 6468 5962 ID=Msa1461840-mRNA-1:exon:23381;Parent=Msa1461840-mRNA-1
tig0041764 five_prime_UTR 6433 6468 6433 ID=Msa1461840-mRNA-1:five_prime_utr;Parent=Msa1461840-mRNA-1
tig0041764 CDS 5962 6432 5962 ID=Msa1461840-mRNA-1:cds;Parent=Msa1461840-mRNA-1
tig0041764 CDS 4604 5224 4604 ID=Msa1461840-mRNA-1:cds;Parent=Msa1461840-mRNA-1
tig0041764 three_prime_UTR 4433 4603 4433 ID=Msa1461840-mRNA-1:three_prime_utr;Parent=Msa1461840-mRNA-1
Gene Sequence

>Msa1461840

ATGACTGCGAAAGATACAGTGCGTTTTGGCATCCTAGGCTGTGCCACCATCGCCAGAAAACTAGCCAGAGCCATTACTCTCACTCCCAACGCCATCATCTCCGCCATAGGAAGCCGCTCCATATCAAAGGCATCAAAATTTGCCGTCGAAAACAGTTTACCAGCCAGTGTAAGAATCTATGGTAGCTATGATGAGGTTGTGGAGGATTCAGGTGTGGATGCAGTGTACATTCCTCTCCCAACGAGTCTGCACGTGAGGTGGGCGGTTGCTGCCGCGAGTAAGAAGAAGCATGTGCTGGTGGAGAAGCCGGCAGCTCTTGATGTGGCGGAGCTTGATTTGATCTTAGAAGCTTGTGAGGCCAATGGTGTGCAGTTTATGGATGGTTGTATGTGGTTGCATCACCCTAGGACTTTGAACATGGAACACTTGCTTGATCTTTCTAATTCCGATGGTATTGGACCCGTTCAATTTATCCATAGCACATCAACAATGCCAACAACTCAAGAATTCTTGGAGAATAACATTAGAGTAAAGCCAGAGTTGGATGCTCTTGGTGCCCTTGGTGACTTAGCATGGTACTGCATTGGTGCATCCTTATGGGCAAAGGGCTACAAGCTACCAACCACCGTCACCGCGCTTCCCGACGTCACACGAAACGCGGCCGGAGTCATATTATCAATCACATCTTCTTTGCAATGGGACCAACCAAATCAAACAGTTGCAAATATTCACTGCTCATTTCTTTCTCACACGTCCATGGACTTATCTATAAGTGGTTCCAATGGGTCTATGCATCTTAAGGACTTCATAATCCCATACAAGGAGACTAGTGCTTCATTTGACTTCACATTTGGTGCAAAATTTGTTGATCTTCACATTGGGTGGAATGTGAGACCAGAGGAAGTTCATGTTGCCAACAAGCTCCCTCAAGAAGCTTTGATGATACAAGAGTTTGCTAGGCTTGTTGCAAGTATTAGAGATTATGGGTCTCAGCCTTCTACAAAATGGCCAGAAATTAGTAGAAAGACTCAATTGGTAGTTGATGCTGTGAAAAAGTCTTTAGAGCTTGGCTGCAAACCTGTTTCCTTATAG

Protein sequence

>Msa1461840

MTAKDTVRFGILGCATIARKLARAITLTPNAIISAIGSRSISKASKFAVENSLPASVRIYGSYDEVVEDSGVDAVYIPLPTSLHVRWAVAAASKKKHVLVEKPAALDVAELDLILEACEANGVQFMDGCMWLHHPRTLNMEHLLDLSNSDGIGPVQFIHSTSTMPTTQEFLENNIRVKPELDALGALGDLAWYCIGASLWAKGYKLPTTVTALPDVTRNAAGVILSITSSLQWDQPNQTVANIHCSFLSHTSMDLSISGSNGSMHLKDFIIPYKETSASFDFTFGAKFVDLHIGWNVRPEEVHVANKLPQEALMIQEFARLVASIRDYGSQPSTKWPEISRKTQLVVDAVKKSLELGCKPVSL*