AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1424490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1424490 MtrunA17_Chr3g0110001 96.143 363 14 0 1 363 1 363 0.0 724
Msa1424490 MtrunA17_Chr6g0464971 53.782 357 161 2 7 363 9 361 7.38e-140 401
Msa1424490 MtrunA17_Chr6g0465111 53.444 363 165 2 1 363 1 359 7.44e-140 401
Msa1424490 MtrunA17_Chr6g0465121 51.791 363 166 3 1 363 14 367 8.39e-133 384
Msa1424490 MtrunA17_Chr6g0464961 53.221 357 163 2 7 363 31 383 4.80e-130 379
Msa1424490 MtrunA17_Chr1g0200981 49.300 357 177 2 7 363 6 358 2.62e-123 359
Msa1424490 MtrunA17_Chr6g0477771 48.907 366 180 4 1 363 1 362 1.03e-120 353
Msa1424490 MtrunA17_Chr6g0464931 61.765 102 39 0 7 108 9 110 2.68e-36 128
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1424490 AT4G09670.1 50.964 363 174 2 1 363 1 359 8.65e-133 384
Msa1424490 AT1G66130.1 50.815 368 172 5 1 363 1 364 2.25e-127 370
Msa1424490 AT1G34200.1 45.055 364 184 5 1 363 1 349 2.03e-108 322

Find 123 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGCAAGTATTAGAGATTA+TGG 0.187812 tig0025713:+49004 Msa1424490:CDS
TGAGTCTTTCTACTAATTTC+TGG 0.203414 tig0025713:-49049 None:intergenic
GGCCAATGGTGTGCAGTTTA+TGG 0.258616 tig0025713:+47660 Msa1424490:CDS
GCCAACAACTCAAGAATTCT+TGG 0.283873 tig0025713:+48532 Msa1424490:CDS
ACTGCATTGGTGCATCCTTA+TGG 0.311051 tig0025713:+48618 Msa1424490:CDS
TTGTAAACTACCTAGCTATA+AGG 0.315546 tig0025713:-49125 None:intergenic
CTTTCTAATTCCGATGGTAT+TGG 0.331158 tig0025713:+47739 Msa1424490:CDS
CCAGCCAGTGTAAGAATCTA+TGG 0.331530 tig0025713:+47463 Msa1424490:CDS
GCTTCATTTGACTTCACATT+TGG 0.336307 tig0025713:+48872 Msa1424490:CDS
TCCAAGAATTCTTGAGTTGT+TGG 0.338304 tig0025713:-48533 None:intergenic
TTGCAGGGGTTCTAGATCTT+AGG 0.345264 tig0025713:+49300 Msa1424490:three_prime_UTR
TTGCAAGTATTAGAGATTAT+GGG 0.349073 tig0025713:+49005 Msa1424490:CDS
GATGAGGTTGTGGAGGATTC+AGG 0.351521 tig0025713:+47493 Msa1424490:CDS
CTTGTAGCCCTTTGCCCATA+AGG 0.361945 tig0025713:-48633 None:intergenic
GGTCTCAGCCTTCTACAAAA+TGG 0.364608 tig0025713:+49026 Msa1424490:CDS
GCGAAAGATACAGTGCGTTT+TGG 0.371856 tig0025713:+47310 Msa1424490:CDS
GAAGCACTAGTCTCCTTGTA+TGG 0.385920 tig0025713:-48854 None:intergenic
AAAATAACCAAGTGTGTGTT+TGG 0.390831 tig0025713:+49191 Msa1424490:three_prime_UTR
ACAATTATGTCCCTGGTTGC+AGG 0.393455 tig0025713:+49284 Msa1424490:three_prime_UTR
CTGCATTGGTGCATCCTTAT+GGG 0.395767 tig0025713:+48619 Msa1424490:CDS
CAATGGGTCTATGCATCTTA+AGG 0.404896 tig0025713:+48820 Msa1424490:CDS
ATATTTGCAACTGTTTGATT+TGG 0.405206 tig0025713:-48746 None:intergenic
TTGGATGCTCTTGGTGCCCT+TGG 0.407577 tig0025713:+48581 Msa1424490:CDS
GTCTTTGAGTGCTCAACAAC+GGG 0.419878 tig0025713:-49431 Msa1424500:CDS
CTACCTAGCTATAAGGAAAC+AGG 0.424774 tig0025713:-49118 None:intergenic
TTGGCAACATGAACTTCCTC+TGG 0.425477 tig0025713:-48935 None:intergenic
AATCACATCTTCTTTGCAAT+GGG 0.432768 tig0025713:+48718 Msa1424490:CDS
TTGGCATTGTTGATGTGCTA+TGG 0.440696 tig0025713:-48514 None:intergenic
GCCGCGTTTCGTGTGACGTC+GGG 0.440927 tig0025713:-48680 None:intergenic
ACCTCACGTGCAGACTCGTT+GGG 0.443029 tig0025713:-47540 None:intergenic
AATTTGTTGATCTTCACATT+GGG 0.460791 tig0025713:+48900 Msa1424490:CDS
GCATGTGCTGGTGGAGAAGC+CGG 0.461905 tig0025713:+47591 Msa1424490:CDS
CAATCACATCTTCTTTGCAA+TGG 0.469069 tig0025713:+48717 Msa1424490:CDS
ATCTAGAACCCCTGCAACCA+GGG 0.471463 tig0025713:-49294 None:intergenic
ATTTCTTTCTCACACGTCCA+TGG 0.472573 tig0025713:+48778 Msa1424490:CDS
TGATGATACAAGAGTTTGCT+AGG 0.472779 tig0025713:+48978 Msa1424490:CDS
CAACGAGTCTGCACGTGAGG+TGG 0.479606 tig0025713:+47542 Msa1424490:CDS
TGATATGGAGCGGCTTCCTA+TGG 0.484794 tig0025713:-47407 None:intergenic
TTGCAACTGTTTGATTTGGT+TGG 0.486478 tig0025713:-48742 None:intergenic
GTATCATCAAAGCTTCTTGA+GGG 0.492116 tig0025713:-48964 None:intergenic
CTTGATCTTTCTAATTCCGA+TGG 0.493134 tig0025713:+47733 Msa1424490:CDS
TGTTCCATGTTCAAAGTCCT+AGG 0.493353 tig0025713:-47706 None:intergenic
TATTAGAATGATGATACAAA+CGG 0.497108 tig0025713:+49397 Msa1424490:three_prime_UTR
CAATTATGTCCCTGGTTGCA+GGG 0.497640 tig0025713:+49285 Msa1424490:three_prime_UTR
ATGGCGGAGATGATGGCGTT+GGG 0.501964 tig0025713:-47388 None:intergenic
GGAAGCGCGGTGACGGTGGT+TGG 0.503525 tig0025713:-48659 None:intergenic
AATTAGTAGAAAGACTCAAT+TGG 0.503887 tig0025713:+49054 Msa1424490:CDS
GCTTCCTATGGCGGAGATGA+TGG 0.507003 tig0025713:-47395 None:intergenic
CACCTCACGTGCAGACTCGT+TGG 0.508185 tig0025713:-47541 None:intergenic
TTGTTGATCTTCACATTGGG+TGG 0.508424 tig0025713:+48903 Msa1424490:CDS
TTATCTATAAGTGGTTCCAA+TGG 0.509254 tig0025713:+48803 Msa1424490:CDS
GACGTCGGGAAGCGCGGTGA+CGG 0.509701 tig0025713:-48666 None:intergenic
TCCGCCACATCAAGAGCTGC+CGG 0.512954 tig0025713:-47610 None:intergenic
AGCTTCTTGAGGGAGCTTGT+TGG 0.517538 tig0025713:-48954 None:intergenic
TGGCGATGGTGGCACAGCCT+AGG 0.518030 tig0025713:-47336 None:intergenic
GGTCCACTTACAAATTGAAC+GGG 0.518152 tig0025713:-47763 None:intergenic
GGCCGCGTTTCGTGTGACGT+CGG 0.518232 tig0025713:-48681 None:intergenic
CTTAAGATGCATAGACCCAT+TGG 0.520577 tig0025713:-48819 None:intergenic
CCATAGATTCTTACACTGGC+TGG 0.521540 tig0025713:-47463 None:intergenic
GTATGTGGTTGCATCACCCT+AGG 0.522961 tig0025713:+47689 Msa1424490:CDS
AAGCCAGAGTTGGATGCTCT+TGG 0.523659 tig0025713:+48572 Msa1424490:CDS
GCACCAAGAGCATCCAACTC+TGG 0.523813 tig0025713:-48575 None:intergenic
ACAATATATAGATATGTATC+CGG 0.524200 tig0025713:+49156 Msa1424490:three_prime_UTR
ATCCATAAACTGCACACCAT+TGG 0.527926 tig0025713:-47662 None:intergenic
AGTTTATGGATGGTTGTATG+TGG 0.530031 tig0025713:+47674 Msa1424490:CDS
TGGTGCATCCTTATGGGCAA+AGG 0.534190 tig0025713:+48625 Msa1424490:CDS
GTGCCCTTGGTGACTTAGCA+TGG 0.534689 tig0025713:+48594 Msa1424490:CDS
TTTGGATCCAAACACACACT+TGG 0.535582 tig0025713:-49198 None:intergenic
AAACCTGTTTCCTTATAGCT+AGG 0.537230 tig0025713:+49115 Msa1424490:exon
TATGGCGGAGATGATGGCGT+TGG 0.538344 tig0025713:-47389 None:intergenic
CATTAGAGTAAAGCCAGAGT+TGG 0.540850 tig0025713:+48562 Msa1424490:CDS
TATCTATAAGTGGTTCCAAT+GGG 0.541220 tig0025713:+48804 Msa1424490:CDS
GCCGGCAGCTCTTGATGTGG+CGG 0.542894 tig0025713:+47609 Msa1424490:CDS
GTCGGGAAGCGCGGTGACGG+TGG 0.543015 tig0025713:-48663 None:intergenic
AACGAGTCTGCACGTGAGGT+GGG 0.545992 tig0025713:+47543 Msa1424490:CDS
GGTGCATCCTTATGGGCAAA+GGG 0.546980 tig0025713:+48626 Msa1424490:CDS
ATAGATAACAATTATGTCCC+TGG 0.547312 tig0025713:+49277 Msa1424490:three_prime_UTR
GATCTAGAACCCCTGCAACC+AGG 0.548868 tig0025713:-49295 None:intergenic
TCCCAACGAGTCTGCACGTG+AGG 0.549930 tig0025713:+47539 Msa1424490:CDS
GACGTCACACGAAACGCGGC+CGG 0.553374 tig0025713:+48683 Msa1424490:CDS
TGTATCATCAAAGCTTCTTG+AGG 0.553516 tig0025713:-48965 None:intergenic
TCCATGGACTTATCTATAAG+TGG 0.554506 tig0025713:+48794 Msa1424490:CDS
AAATTTGTTGATCTTCACAT+TGG 0.555127 tig0025713:+48899 Msa1424490:CDS
ACGTGCAGACTCGTTGGGAG+AGG 0.559746 tig0025713:-47535 None:intergenic
GACTTAGCATGGTACTGCAT+TGG 0.559827 tig0025713:+48605 Msa1424490:CDS
ATTAAGTCGTGCTATACCTC+CGG 0.560720 tig0025713:-49351 None:intergenic
GGGAGTGAGAGTAATGGCTC+TGG 0.562162 tig0025713:-47368 None:intergenic
AAGCACTAGTCTCCTTGTAT+GGG 0.562955 tig0025713:-48853 None:intergenic
TGGTAGCTATGATGAGGTTG+TGG 0.572449 tig0025713:+47483 Msa1424490:CDS
AATGGTGTGCAGTTTATGGA+TGG 0.573112 tig0025713:+47664 Msa1424490:CDS
TCTAGATCTTAGGTGTAGCA+TGG 0.577597 tig0025713:+49310 Msa1424490:three_prime_UTR
TATAGCACGACTTAATGTAC+TGG 0.577856 tig0025713:+49358 Msa1424490:three_prime_UTR
TCACCCTAGGACTTTGAACA+TGG 0.579802 tig0025713:+47702 Msa1424490:CDS
AATTATGTCCCTGGTTGCAG+GGG 0.582368 tig0025713:+49286 Msa1424490:three_prime_UTR
GAGTAAGAAGAAGCATGTGC+TGG 0.587416 tig0025713:+47579 Msa1424490:CDS
TCGTGTGACGTCGGGAAGCG+CGG 0.588189 tig0025713:-48672 None:intergenic
GTACTCAATATATATTTCTG+TGG 0.588609 tig0025713:-49245 None:intergenic
GGGTCCACTTACAAATTGAA+CGG 0.596830 tig0025713:-47764 None:intergenic
AACGCCATCATCTCCGCCAT+AGG 0.597780 tig0025713:+47391 Msa1424490:CDS
GGACTTCATAATCCCATACA+AGG 0.597873 tig0025713:+48841 Msa1424490:CDS
TAAGAAGAAGCATGTGCTGG+TGG 0.600324 tig0025713:+47582 Msa1424490:CDS
TCCCGACGTCACACGAAACG+CGG 0.601248 tig0025713:+48679 Msa1424490:CDS
TTAGAAGCTTGTGAGGCCAA+TGG 0.602079 tig0025713:+47646 Msa1424490:CDS
AGGAAGCCGCTCCATATCAA+AGG 0.605041 tig0025713:+47411 Msa1424490:CDS
TGTCTTTGAGTGCTCAACAA+CGG 0.608693 tig0025713:-49432 Msa1424500:CDS
TTTGATCTTAGAAGCTTGTG+AGG 0.608724 tig0025713:+47639 Msa1424490:CDS
GAAGCCGGCAGCTCTTGATG+TGG 0.611028 tig0025713:+47606 Msa1424490:CDS
GCTACCATAGATTCTTACAC+TGG 0.617062 tig0025713:-47467 None:intergenic
GTTCCATGTTCAAAGTCCTA+GGG 0.618905 tig0025713:-47705 None:intergenic
TTGATGCCTTTGATATGGAG+CGG 0.624795 tig0025713:-47417 None:intergenic
ACCACTTATAGATAAGTCCA+TGG 0.629957 tig0025713:-48795 None:intergenic
CACATGCTTCTTCTTACTCG+CGG 0.630145 tig0025713:-47575 None:intergenic
TGTGATTGATAATATGACTC+CGG 0.634032 tig0025713:-48702 None:intergenic
TATGGAGCGGCTTCCTATGG+CGG 0.636562 tig0025713:-47404 None:intergenic
AATCTATGGTAGCTATGATG+AGG 0.644571 tig0025713:+47477 Msa1424490:CDS
TTGAACGGGTCCAATACCAT+CGG 0.652449 tig0025713:-47749 None:intergenic
GAGTCTGCACGTGAGGTGGG+CGG 0.653603 tig0025713:+47546 Msa1424490:CDS
TAGCTATGATGAGGTTGTGG+AGG 0.660081 tig0025713:+47486 Msa1424490:CDS
GGTTGTGGAGGATTCAGGTG+TGG 0.667223 tig0025713:+47498 Msa1424490:CDS
AGTACCATGCTAAGTCACCA+AGG 0.689002 tig0025713:-48598 None:intergenic
GTACCATGCTAAGTCACCAA+GGG 0.692891 tig0025713:-48597 None:intergenic
GGCGTTGGGAGTGAGAGTAA+TGG 0.702980 tig0025713:-47374 None:intergenic
TGGGTGGAATGTGAGACCAG+AGG 0.750850 tig0025713:+48919 Msa1424490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAGATATAATGAAATA+GGG - tig0025713:47788-47807 None:intergenic 10.0%
!! TATATAAGATATAATGAAAT+AGG - tig0025713:47789-47808 None:intergenic 10.0%
!!! TGAACTAAAAAAAAAATTTT+AGG + tig0025713:48256-48275 Msa1424490:intron 10.0%
!!! AAAAAAAATTTTAGGAAATT+TGG + tig0025713:48264-48283 Msa1424490:intron 10.0%
!!! TTATTTTATCAAATTTTATC+CGG - tig0025713:49178-49197 None:intergenic 10.0%
!! ATATAAGATATAATGAAATA+GGG - tig0025713:47788-47807 None:intergenic 10.0%
!! TATATAAGATATAATGAAAT+AGG - tig0025713:47789-47808 None:intergenic 10.0%
!!! TGAACTAAAAAAAAAATTTT+AGG + tig0025713:48256-48275 Msa1424490:intron 10.0%
!!! AAAAAAAATTTTAGGAAATT+TGG + tig0025713:48264-48283 Msa1424490:intron 10.0%
!!! TTATTTTATCAAATTTTATC+CGG - tig0025713:49178-49197 None:intergenic 10.0%
!! TATAAGATATAATGAAATAG+GGG - tig0025713:47787-47806 None:intergenic 15.0%
!!! AAACTCTAAATTTGTTTATA+AGG + tig0025713:47822-47841 Msa1424490:intron 15.0%
!!! CAATGTTTAAATTTTTACAA+AGG + tig0025713:47984-48003 Msa1424490:intron 15.0%
!! AGAAAAAAAAAAAAACAGTT+TGG + tig0025713:48127-48146 Msa1424490:intron 15.0%
!! TATAAGATATAATGAAATAG+GGG - tig0025713:47787-47806 None:intergenic 15.0%
!!! AAACTCTAAATTTGTTTATA+AGG + tig0025713:47822-47841 Msa1424490:intron 15.0%
!!! CAATGTTTAAATTTTTACAA+AGG + tig0025713:47984-48003 Msa1424490:intron 15.0%
!! AGAAAAAAAAAAAAACAGTT+TGG + tig0025713:48127-48146 Msa1424490:intron 15.0%
!! TACAAGTATTTAGGTAAATT+TGG + tig0025713:47869-47888 Msa1424490:intron 20.0%
!!! ATTTAGGTAAATTTGGAATA+TGG + tig0025713:47876-47895 Msa1424490:intron 20.0%
!! CATACTAACAATTTAAATCT+TGG + tig0025713:48032-48051 Msa1424490:intron 20.0%
!! AAAAAAAAAAAACAGTTTGG+TGG + tig0025713:48130-48149 Msa1424490:intron 20.0%
!! GAAATTTGGATATAAAATTG+AGG + tig0025713:48278-48297 Msa1424490:intron 20.0%
!! ACAATATATAGATATGTATC+CGG + tig0025713:49156-49175 Msa1424490:three_prime_UTR 20.0%
!! TATTAGAATGATGATACAAA+CGG + tig0025713:49397-49416 Msa1424490:three_prime_UTR 20.0%
!! TACAAGTATTTAGGTAAATT+TGG + tig0025713:47869-47888 Msa1424490:intron 20.0%
!!! ATTTAGGTAAATTTGGAATA+TGG + tig0025713:47876-47895 Msa1424490:intron 20.0%
!! CATACTAACAATTTAAATCT+TGG + tig0025713:48032-48051 Msa1424490:intron 20.0%
!! AAAAAAAAAAAACAGTTTGG+TGG + tig0025713:48130-48149 Msa1424490:intron 20.0%
!! GAAATTTGGATATAAAATTG+AGG + tig0025713:48278-48297 Msa1424490:intron 20.0%
!! ACAATATATAGATATGTATC+CGG + tig0025713:49156-49175 Msa1424490:three_prime_UTR 20.0%
!! TATTAGAATGATGATACAAA+CGG + tig0025713:49397-49416 Msa1424490:three_prime_UTR 20.0%
!!! AAATTTTGATGCCTTTGATA+TGG - tig0025713:47425-47444 None:intergenic 25.0%
! CTAACAATTTAAATCTTGGT+AGG + tig0025713:48036-48055 Msa1424490:intron 25.0%
! TAATATTATTCGAGACATGA+CGG - tig0025713:48084-48103 None:intergenic 25.0%
! ATATTTGCAACTGTTTGATT+TGG - tig0025713:48749-48768 None:intergenic 25.0%
!!! AAATTTGTTGATCTTCACAT+TGG + tig0025713:48899-48918 Msa1424490:CDS 25.0%
!!! AATTTGTTGATCTTCACATT+GGG + tig0025713:48900-48919 Msa1424490:CDS 25.0%
! TTGCAAGTATTAGAGATTAT+GGG + tig0025713:49005-49024 Msa1424490:CDS 25.0%
! AATTAGTAGAAAGACTCAAT+TGG + tig0025713:49054-49073 Msa1424490:CDS 25.0%
!! TGATTTTGTCAAACTAACTT+TGG - tig0025713:49219-49238 None:intergenic 25.0%
!! GTACTCAATATATATTTCTG+TGG - tig0025713:49248-49267 None:intergenic 25.0%
!!! AAATTTTGATGCCTTTGATA+TGG - tig0025713:47425-47444 None:intergenic 25.0%
! CTAACAATTTAAATCTTGGT+AGG + tig0025713:48036-48055 Msa1424490:intron 25.0%
! TAATATTATTCGAGACATGA+CGG - tig0025713:48084-48103 None:intergenic 25.0%
! ATATTTGCAACTGTTTGATT+TGG - tig0025713:48749-48768 None:intergenic 25.0%
!!! AAATTTGTTGATCTTCACAT+TGG + tig0025713:48899-48918 Msa1424490:CDS 25.0%
!!! AATTTGTTGATCTTCACATT+GGG + tig0025713:48900-48919 Msa1424490:CDS 25.0%
! TTGCAAGTATTAGAGATTAT+GGG + tig0025713:49005-49024 Msa1424490:CDS 25.0%
! AATTAGTAGAAAGACTCAAT+TGG + tig0025713:49054-49073 Msa1424490:CDS 25.0%
!! TGATTTTGTCAAACTAACTT+TGG - tig0025713:49219-49238 None:intergenic 25.0%
!! GTACTCAATATATATTTCTG+TGG - tig0025713:49248-49267 None:intergenic 25.0%
!! ATCTTTCGCAGTCATTTTAT+GGG - tig0025713:47299-47318 None:intergenic 30.0%
!! TATCTTTCGCAGTCATTTTA+TGG - tig0025713:47300-47319 None:intergenic 30.0%
CCTAAATACTTGTAGTATAC+TGG - tig0025713:47863-47882 None:intergenic 30.0%
CCAGTATACTACAAGTATTT+AGG + tig0025713:47860-47879 Msa1424490:intron 30.0%
! GGTAAATTTGGAATATGGAT+CGG + tig0025713:47881-47900 Msa1424490:intron 30.0%
! GTAAATTTGGAATATGGATC+GGG + tig0025713:47882-47901 Msa1424490:intron 30.0%
TACATCAAGTGAAAGAGATT+AGG + tig0025713:48102-48121 Msa1424490:intron 30.0%
ACATCAAGTGAAAGAGATTA+GGG + tig0025713:48103-48122 Msa1424490:intron 30.0%
! AAAAAAACAGTTTGGTGGTT+TGG + tig0025713:48135-48154 Msa1424490:intron 30.0%
! AAAAAACAGTTTGGTGGTTT+GGG + tig0025713:48136-48155 Msa1424490:intron 30.0%
ATAGCTAACAACTATCATTG+AGG + tig0025713:48322-48341 Msa1424490:intron 30.0%
! TGTGATTGATAATATGACTC+CGG - tig0025713:48705-48724 None:intergenic 30.0%
AATCACATCTTCTTTGCAAT+GGG + tig0025713:48718-48737 Msa1424490:CDS 30.0%
TTATCTATAAGTGGTTCCAA+TGG + tig0025713:48803-48822 Msa1424490:CDS 30.0%
TATCTATAAGTGGTTCCAAT+GGG + tig0025713:48804-48823 Msa1424490:CDS 30.0%
GTTGCAAGTATTAGAGATTA+TGG + tig0025713:49004-49023 Msa1424490:CDS 30.0%
TGAGTCTTTCTACTAATTTC+TGG - tig0025713:49052-49071 None:intergenic 30.0%
TTGTAAACTACCTAGCTATA+AGG - tig0025713:49128-49147 None:intergenic 30.0%
AAAATAACCAAGTGTGTGTT+TGG + tig0025713:49191-49210 Msa1424490:three_prime_UTR 30.0%
ATAGATAACAATTATGTCCC+TGG + tig0025713:49277-49296 Msa1424490:three_prime_UTR 30.0%
!! ATCTTTCGCAGTCATTTTAT+GGG - tig0025713:47299-47318 None:intergenic 30.0%
!! TATCTTTCGCAGTCATTTTA+TGG - tig0025713:47300-47319 None:intergenic 30.0%
CCTAAATACTTGTAGTATAC+TGG - tig0025713:47863-47882 None:intergenic 30.0%
CCAGTATACTACAAGTATTT+AGG + tig0025713:47860-47879 Msa1424490:intron 30.0%
! GGTAAATTTGGAATATGGAT+CGG + tig0025713:47881-47900 Msa1424490:intron 30.0%
! GTAAATTTGGAATATGGATC+GGG + tig0025713:47882-47901 Msa1424490:intron 30.0%
TACATCAAGTGAAAGAGATT+AGG + tig0025713:48102-48121 Msa1424490:intron 30.0%
ACATCAAGTGAAAGAGATTA+GGG + tig0025713:48103-48122 Msa1424490:intron 30.0%
! AAAAAAACAGTTTGGTGGTT+TGG + tig0025713:48135-48154 Msa1424490:intron 30.0%
! AAAAAACAGTTTGGTGGTTT+GGG + tig0025713:48136-48155 Msa1424490:intron 30.0%
ATAGCTAACAACTATCATTG+AGG + tig0025713:48322-48341 Msa1424490:intron 30.0%
! TGTGATTGATAATATGACTC+CGG - tig0025713:48705-48724 None:intergenic 30.0%
AATCACATCTTCTTTGCAAT+GGG + tig0025713:48718-48737 Msa1424490:CDS 30.0%
TTATCTATAAGTGGTTCCAA+TGG + tig0025713:48803-48822 Msa1424490:CDS 30.0%
TATCTATAAGTGGTTCCAAT+GGG + tig0025713:48804-48823 Msa1424490:CDS 30.0%
GTTGCAAGTATTAGAGATTA+TGG + tig0025713:49004-49023 Msa1424490:CDS 30.0%
TGAGTCTTTCTACTAATTTC+TGG - tig0025713:49052-49071 None:intergenic 30.0%
TTGTAAACTACCTAGCTATA+AGG - tig0025713:49128-49147 None:intergenic 30.0%
AAAATAACCAAGTGTGTGTT+TGG + tig0025713:49191-49210 Msa1424490:three_prime_UTR 30.0%
ATAGATAACAATTATGTCCC+TGG + tig0025713:49277-49296 Msa1424490:three_prime_UTR 30.0%
AATCTATGGTAGCTATGATG+AGG + tig0025713:47477-47496 Msa1424490:CDS 35.0%
TTTGATCTTAGAAGCTTGTG+AGG + tig0025713:47639-47658 Msa1424490:CDS 35.0%
AGTTTATGGATGGTTGTATG+TGG + tig0025713:47674-47693 Msa1424490:CDS 35.0%
CTTGATCTTTCTAATTCCGA+TGG + tig0025713:47733-47752 Msa1424490:CDS 35.0%
CTTTCTAATTCCGATGGTAT+TGG + tig0025713:47739-47758 Msa1424490:CDS 35.0%
CATCAAGTGAAAGAGATTAG+GGG + tig0025713:48104-48123 Msa1424490:intron 35.0%
! AAAAACAGTTTGGTGGTTTG+GGG + tig0025713:48137-48156 Msa1424490:intron 35.0%
! TCCAAGAATTCTTGAGTTGT+TGG - tig0025713:48536-48555 None:intergenic 35.0%
CAATCACATCTTCTTTGCAA+TGG + tig0025713:48717-48736 Msa1424490:CDS 35.0%
!! TTGCAACTGTTTGATTTGGT+TGG - tig0025713:48745-48764 None:intergenic 35.0%
TCCATGGACTTATCTATAAG+TGG + tig0025713:48794-48813 Msa1424490:CDS 35.0%
ACCACTTATAGATAAGTCCA+TGG - tig0025713:48798-48817 None:intergenic 35.0%
! GCTTCATTTGACTTCACATT+TGG + tig0025713:48872-48891 Msa1424490:CDS 35.0%
GTATCATCAAAGCTTCTTGA+GGG - tig0025713:48967-48986 None:intergenic 35.0%
TGTATCATCAAAGCTTCTTG+AGG - tig0025713:48968-48987 None:intergenic 35.0%
! TGATGATACAAGAGTTTGCT+AGG + tig0025713:48978-48997 Msa1424490:CDS 35.0%
!!! ATTTCTGGCCATTTTGTAGA+AGG - tig0025713:49037-49056 None:intergenic 35.0%
!! GTGAAAAAGTCTTTAGAGCT+TGG + tig0025713:49088-49107 Msa1424490:CDS 35.0%
AAACCTGTTTCCTTATAGCT+AGG + tig0025713:49115-49134 Msa1424490:exon 35.0%
! GCATGGCCTTTTCTTTTTTT+CGG + tig0025713:49327-49346 Msa1424490:three_prime_UTR 35.0%
TATAGCACGACTTAATGTAC+TGG + tig0025713:49358-49377 Msa1424490:three_prime_UTR 35.0%
GCAATAATAATTCCCGTTGT+TGG + tig0025713:49419-49438 Msa1424490:three_prime_UTR 35.0%
AATCTATGGTAGCTATGATG+AGG + tig0025713:47477-47496 Msa1424490:CDS 35.0%
TTTGATCTTAGAAGCTTGTG+AGG + tig0025713:47639-47658 Msa1424490:CDS 35.0%
AGTTTATGGATGGTTGTATG+TGG + tig0025713:47674-47693 Msa1424490:CDS 35.0%
CTTGATCTTTCTAATTCCGA+TGG + tig0025713:47733-47752 Msa1424490:CDS 35.0%
CTTTCTAATTCCGATGGTAT+TGG + tig0025713:47739-47758 Msa1424490:CDS 35.0%
CATCAAGTGAAAGAGATTAG+GGG + tig0025713:48104-48123 Msa1424490:intron 35.0%
! AAAAACAGTTTGGTGGTTTG+GGG + tig0025713:48137-48156 Msa1424490:intron 35.0%
! TCCAAGAATTCTTGAGTTGT+TGG - tig0025713:48536-48555 None:intergenic 35.0%
CAATCACATCTTCTTTGCAA+TGG + tig0025713:48717-48736 Msa1424490:CDS 35.0%
!! TTGCAACTGTTTGATTTGGT+TGG - tig0025713:48745-48764 None:intergenic 35.0%
TCCATGGACTTATCTATAAG+TGG + tig0025713:48794-48813 Msa1424490:CDS 35.0%
ACCACTTATAGATAAGTCCA+TGG - tig0025713:48798-48817 None:intergenic 35.0%
! GCTTCATTTGACTTCACATT+TGG + tig0025713:48872-48891 Msa1424490:CDS 35.0%
GTATCATCAAAGCTTCTTGA+GGG - tig0025713:48967-48986 None:intergenic 35.0%
TGTATCATCAAAGCTTCTTG+AGG - tig0025713:48968-48987 None:intergenic 35.0%
! TGATGATACAAGAGTTTGCT+AGG + tig0025713:48978-48997 Msa1424490:CDS 35.0%
!!! ATTTCTGGCCATTTTGTAGA+AGG - tig0025713:49037-49056 None:intergenic 35.0%
!! GTGAAAAAGTCTTTAGAGCT+TGG + tig0025713:49088-49107 Msa1424490:CDS 35.0%
AAACCTGTTTCCTTATAGCT+AGG + tig0025713:49115-49134 Msa1424490:exon 35.0%
! GCATGGCCTTTTCTTTTTTT+CGG + tig0025713:49327-49346 Msa1424490:three_prime_UTR 35.0%
TATAGCACGACTTAATGTAC+TGG + tig0025713:49358-49377 Msa1424490:three_prime_UTR 35.0%
TTGATGCCTTTGATATGGAG+CGG - tig0025713:47420-47439 None:intergenic 40.0%
GCTACCATAGATTCTTACAC+TGG - tig0025713:47470-47489 None:intergenic 40.0%
ATCCATAAACTGCACACCAT+TGG - tig0025713:47665-47684 None:intergenic 40.0%
AATGGTGTGCAGTTTATGGA+TGG + tig0025713:47664-47683 Msa1424490:CDS 40.0%
GTTCCATGTTCAAAGTCCTA+GGG - tig0025713:47708-47727 None:intergenic 40.0%
TGTTCCATGTTCAAAGTCCT+AGG - tig0025713:47709-47728 None:intergenic 40.0%
GGTCCACTTACAAATTGAAC+GGG - tig0025713:47766-47785 None:intergenic 40.0%
GGGTCCACTTACAAATTGAA+CGG - tig0025713:47767-47786 None:intergenic 40.0%
! AAAACAGTTTGGTGGTTTGG+GGG + tig0025713:48138-48157 Msa1424490:intron 40.0%
TGGGGGAATAACATAAGAGT+TGG + tig0025713:48155-48174 Msa1424490:intron 40.0%
TTGGCATTGTTGATGTGCTA+TGG - tig0025713:48517-48536 None:intergenic 40.0%
GCCAACAACTCAAGAATTCT+TGG + tig0025713:48532-48551 Msa1424490:CDS 40.0%
CATTAGAGTAAAGCCAGAGT+TGG + tig0025713:48562-48581 Msa1424490:CDS 40.0%
ATTTCTTTCTCACACGTCCA+TGG + tig0025713:48778-48797 Msa1424490:CDS 40.0%
CTTAAGATGCATAGACCCAT+TGG - tig0025713:48822-48841 None:intergenic 40.0%
CAATGGGTCTATGCATCTTA+AGG + tig0025713:48820-48839 Msa1424490:CDS 40.0%
GGACTTCATAATCCCATACA+AGG + tig0025713:48841-48860 Msa1424490:CDS 40.0%
! AAGCACTAGTCTCCTTGTAT+GGG - tig0025713:48856-48875 None:intergenic 40.0%
TTGTTGATCTTCACATTGGG+TGG + tig0025713:48903-48922 Msa1424490:CDS 40.0%
CTACCTAGCTATAAGGAAAC+AGG - tig0025713:49121-49140 None:intergenic 40.0%
TTTGGATCCAAACACACACT+TGG - tig0025713:49201-49220 None:intergenic 40.0%
TCTAGATCTTAGGTGTAGCA+TGG + tig0025713:49310-49329 Msa1424490:three_prime_UTR 40.0%
!!! GCCTTTTCTTTTTTTCGGAC+CGG + tig0025713:49332-49351 Msa1424490:three_prime_UTR 40.0%
TCCGGTCCGAAAAAAAGAAA+AGG - tig0025713:49336-49355 None:intergenic 40.0%
!!! TTTTCTTTTTTTCGGACCGG+AGG + tig0025713:49335-49354 Msa1424490:three_prime_UTR 40.0%
ATTAAGTCGTGCTATACCTC+CGG - tig0025713:49354-49373 None:intergenic 40.0%
TTGATGCCTTTGATATGGAG+CGG - tig0025713:47420-47439 None:intergenic 40.0%
GCTACCATAGATTCTTACAC+TGG - tig0025713:47470-47489 None:intergenic 40.0%
ATCCATAAACTGCACACCAT+TGG - tig0025713:47665-47684 None:intergenic 40.0%
AATGGTGTGCAGTTTATGGA+TGG + tig0025713:47664-47683 Msa1424490:CDS 40.0%
GTTCCATGTTCAAAGTCCTA+GGG - tig0025713:47708-47727 None:intergenic 40.0%
TGTTCCATGTTCAAAGTCCT+AGG - tig0025713:47709-47728 None:intergenic 40.0%
GGTCCACTTACAAATTGAAC+GGG - tig0025713:47766-47785 None:intergenic 40.0%
GGGTCCACTTACAAATTGAA+CGG - tig0025713:47767-47786 None:intergenic 40.0%
! AAAACAGTTTGGTGGTTTGG+GGG + tig0025713:48138-48157 Msa1424490:intron 40.0%
TGGGGGAATAACATAAGAGT+TGG + tig0025713:48155-48174 Msa1424490:intron 40.0%
TTGGCATTGTTGATGTGCTA+TGG - tig0025713:48517-48536 None:intergenic 40.0%
GCCAACAACTCAAGAATTCT+TGG + tig0025713:48532-48551 Msa1424490:CDS 40.0%
CATTAGAGTAAAGCCAGAGT+TGG + tig0025713:48562-48581 Msa1424490:CDS 40.0%
ATTTCTTTCTCACACGTCCA+TGG + tig0025713:48778-48797 Msa1424490:CDS 40.0%
CTTAAGATGCATAGACCCAT+TGG - tig0025713:48822-48841 None:intergenic 40.0%
CAATGGGTCTATGCATCTTA+AGG + tig0025713:48820-48839 Msa1424490:CDS 40.0%
GGACTTCATAATCCCATACA+AGG + tig0025713:48841-48860 Msa1424490:CDS 40.0%
! AAGCACTAGTCTCCTTGTAT+GGG - tig0025713:48856-48875 None:intergenic 40.0%
TTGTTGATCTTCACATTGGG+TGG + tig0025713:48903-48922 Msa1424490:CDS 40.0%
CTACCTAGCTATAAGGAAAC+AGG - tig0025713:49121-49140 None:intergenic 40.0%
TTTGGATCCAAACACACACT+TGG - tig0025713:49201-49220 None:intergenic 40.0%
TCTAGATCTTAGGTGTAGCA+TGG + tig0025713:49310-49329 Msa1424490:three_prime_UTR 40.0%
!!! GCCTTTTCTTTTTTTCGGAC+CGG + tig0025713:49332-49351 Msa1424490:three_prime_UTR 40.0%
TCCGGTCCGAAAAAAAGAAA+AGG - tig0025713:49336-49355 None:intergenic 40.0%
!!! TTTTCTTTTTTTCGGACCGG+AGG + tig0025713:49335-49354 Msa1424490:three_prime_UTR 40.0%
ATTAAGTCGTGCTATACCTC+CGG - tig0025713:49354-49373 None:intergenic 40.0%
! GCGAAAGATACAGTGCGTTT+TGG + tig0025713:47310-47329 Msa1424490:CDS 45.0%
!!! AATGGCTCTGGCTAGTTTTC+TGG - tig0025713:47359-47378 None:intergenic 45.0%
! GGCTGGTAAACTGTTTTCGA+CGG - tig0025713:47449-47468 None:intergenic 45.0%
CCATAGATTCTTACACTGGC+TGG - tig0025713:47466-47485 None:intergenic 45.0%
CCAGCCAGTGTAAGAATCTA+TGG + tig0025713:47463-47482 Msa1424490:CDS 45.0%
TGGTAGCTATGATGAGGTTG+TGG + tig0025713:47483-47502 Msa1424490:CDS 45.0%
TAGCTATGATGAGGTTGTGG+AGG + tig0025713:47486-47505 Msa1424490:CDS 45.0%
CACATGCTTCTTCTTACTCG+CGG - tig0025713:47578-47597 None:intergenic 45.0%
! GAGTAAGAAGAAGCATGTGC+TGG + tig0025713:47579-47598 Msa1424490:CDS 45.0%
! TAAGAAGAAGCATGTGCTGG+TGG + tig0025713:47582-47601 Msa1424490:CDS 45.0%
TTAGAAGCTTGTGAGGCCAA+TGG + tig0025713:47646-47665 Msa1424490:CDS 45.0%
TCACCCTAGGACTTTGAACA+TGG + tig0025713:47702-47721 Msa1424490:CDS 45.0%
TTGAACGGGTCCAATACCAT+CGG - tig0025713:47752-47771 None:intergenic 45.0%
GGACCCGTTCAATTTGTAAG+TGG + tig0025713:47760-47779 Msa1424490:intron 45.0%
AAAACTAGACCCCAACAACG+TGG + tig0025713:47916-47935 Msa1424490:intron 45.0%
CGATGCTGACAAGGGATTAA+AGG + tig0025713:47943-47962 Msa1424490:intron 45.0%
GTACCATGCTAAGTCACCAA+GGG - tig0025713:48600-48619 None:intergenic 45.0%
AGTACCATGCTAAGTCACCA+AGG - tig0025713:48601-48620 None:intergenic 45.0%
GACTTAGCATGGTACTGCAT+TGG + tig0025713:48605-48624 Msa1424490:CDS 45.0%
! ACTGCATTGGTGCATCCTTA+TGG + tig0025713:48618-48637 Msa1424490:CDS 45.0%
! CTGCATTGGTGCATCCTTAT+GGG + tig0025713:48619-48638 Msa1424490:CDS 45.0%
! GAAGCACTAGTCTCCTTGTA+TGG - tig0025713:48857-48876 None:intergenic 45.0%
TTGGCAACATGAACTTCCTC+TGG - tig0025713:48938-48957 None:intergenic 45.0%
GGTCTCAGCCTTCTACAAAA+TGG + tig0025713:49026-49045 Msa1424490:CDS 45.0%
ACAATTATGTCCCTGGTTGC+AGG + tig0025713:49284-49303 Msa1424490:three_prime_UTR 45.0%
CAATTATGTCCCTGGTTGCA+GGG + tig0025713:49285-49304 Msa1424490:three_prime_UTR 45.0%
AATTATGTCCCTGGTTGCAG+GGG + tig0025713:49286-49305 Msa1424490:three_prime_UTR 45.0%
!! TTGCAGGGGTTCTAGATCTT+AGG + tig0025713:49300-49319 Msa1424490:three_prime_UTR 45.0%
! GCGAAAGATACAGTGCGTTT+TGG + tig0025713:47310-47329 Msa1424490:CDS 45.0%
!!! AATGGCTCTGGCTAGTTTTC+TGG - tig0025713:47359-47378 None:intergenic 45.0%
! GGCTGGTAAACTGTTTTCGA+CGG - tig0025713:47449-47468 None:intergenic 45.0%
CCATAGATTCTTACACTGGC+TGG - tig0025713:47466-47485 None:intergenic 45.0%
CCAGCCAGTGTAAGAATCTA+TGG + tig0025713:47463-47482 Msa1424490:CDS 45.0%
TGGTAGCTATGATGAGGTTG+TGG + tig0025713:47483-47502 Msa1424490:CDS 45.0%
TAGCTATGATGAGGTTGTGG+AGG + tig0025713:47486-47505 Msa1424490:CDS 45.0%
CACATGCTTCTTCTTACTCG+CGG - tig0025713:47578-47597 None:intergenic 45.0%
! GAGTAAGAAGAAGCATGTGC+TGG + tig0025713:47579-47598 Msa1424490:CDS 45.0%
! TAAGAAGAAGCATGTGCTGG+TGG + tig0025713:47582-47601 Msa1424490:CDS 45.0%
TTAGAAGCTTGTGAGGCCAA+TGG + tig0025713:47646-47665 Msa1424490:CDS 45.0%
TCACCCTAGGACTTTGAACA+TGG + tig0025713:47702-47721 Msa1424490:CDS 45.0%
TTGAACGGGTCCAATACCAT+CGG - tig0025713:47752-47771 None:intergenic 45.0%
GGACCCGTTCAATTTGTAAG+TGG + tig0025713:47760-47779 Msa1424490:intron 45.0%
AAAACTAGACCCCAACAACG+TGG + tig0025713:47916-47935 Msa1424490:intron 45.0%
CGATGCTGACAAGGGATTAA+AGG + tig0025713:47943-47962 Msa1424490:intron 45.0%
GTACCATGCTAAGTCACCAA+GGG - tig0025713:48600-48619 None:intergenic 45.0%
AGTACCATGCTAAGTCACCA+AGG - tig0025713:48601-48620 None:intergenic 45.0%
GACTTAGCATGGTACTGCAT+TGG + tig0025713:48605-48624 Msa1424490:CDS 45.0%
! ACTGCATTGGTGCATCCTTA+TGG + tig0025713:48618-48637 Msa1424490:CDS 45.0%
! CTGCATTGGTGCATCCTTAT+GGG + tig0025713:48619-48638 Msa1424490:CDS 45.0%
! GAAGCACTAGTCTCCTTGTA+TGG - tig0025713:48857-48876 None:intergenic 45.0%
TTGGCAACATGAACTTCCTC+TGG - tig0025713:48938-48957 None:intergenic 45.0%
GGTCTCAGCCTTCTACAAAA+TGG + tig0025713:49026-49045 Msa1424490:CDS 45.0%
ACAATTATGTCCCTGGTTGC+AGG + tig0025713:49284-49303 Msa1424490:three_prime_UTR 45.0%
CAATTATGTCCCTGGTTGCA+GGG + tig0025713:49285-49304 Msa1424490:three_prime_UTR 45.0%
AATTATGTCCCTGGTTGCAG+GGG + tig0025713:49286-49305 Msa1424490:three_prime_UTR 45.0%
!! TTGCAGGGGTTCTAGATCTT+AGG + tig0025713:49300-49319 Msa1424490:three_prime_UTR 45.0%
!! TTAAAAAAAAAAATATTAGT+TGG - tig0025713:48229-48248 None:intergenic 5.0%
!! TTAAAAAAAAAAATATTAGT+TGG - tig0025713:48229-48248 None:intergenic 5.0%
!! ACAGTGCGTTTTGGCATCCT+AGG + tig0025713:47319-47338 Msa1424490:CDS 50.0%
!!! TCTGGCTAGTTTTCTGGCGA+TGG - tig0025713:47353-47372 None:intergenic 50.0%
TGATATGGAGCGGCTTCCTA+TGG - tig0025713:47410-47429 None:intergenic 50.0%
AGGAAGCCGCTCCATATCAA+AGG + tig0025713:47411-47430 Msa1424490:CDS 50.0%
GATGAGGTTGTGGAGGATTC+AGG + tig0025713:47493-47512 Msa1424490:CDS 50.0%
GGCCAATGGTGTGCAGTTTA+TGG + tig0025713:47660-47679 Msa1424490:CDS 50.0%
GTATGTGGTTGCATCACCCT+AGG + tig0025713:47689-47708 Msa1424490:CDS 50.0%
CATCGTTTGCCACGTTGTTG+GGG - tig0025713:47928-47947 None:intergenic 50.0%
GCATCGTTTGCCACGTTGTT+GGG - tig0025713:47929-47948 None:intergenic 50.0%
AGCATCGTTTGCCACGTTGT+TGG - tig0025713:47930-47949 None:intergenic 50.0%
GTGGCAAACGATGCTGACAA+GGG + tig0025713:47935-47954 Msa1424490:intron 50.0%
TCATTGAGGTCTAGCGCAAG+TGG + tig0025713:48336-48355 Msa1424490:intron 50.0%
AAGCCAGAGTTGGATGCTCT+TGG + tig0025713:48572-48591 Msa1424490:CDS 50.0%
TGGTGCATCCTTATGGGCAA+AGG + tig0025713:48625-48644 Msa1424490:CDS 50.0%
GGTGCATCCTTATGGGCAAA+GGG + tig0025713:48626-48645 Msa1424490:CDS 50.0%
CTTGTAGCCCTTTGCCCATA+AGG - tig0025713:48636-48655 None:intergenic 50.0%
AGCTTCTTGAGGGAGCTTGT+TGG - tig0025713:48957-48976 None:intergenic 50.0%
! ATCTAGAACCCCTGCAACCA+GGG - tig0025713:49297-49316 None:intergenic 50.0%
!! ACAGTGCGTTTTGGCATCCT+AGG + tig0025713:47319-47338 Msa1424490:CDS 50.0%
!!! TCTGGCTAGTTTTCTGGCGA+TGG - tig0025713:47353-47372 None:intergenic 50.0%
TGATATGGAGCGGCTTCCTA+TGG - tig0025713:47410-47429 None:intergenic 50.0%
AGGAAGCCGCTCCATATCAA+AGG + tig0025713:47411-47430 Msa1424490:CDS 50.0%
GATGAGGTTGTGGAGGATTC+AGG + tig0025713:47493-47512 Msa1424490:CDS 50.0%
GGCCAATGGTGTGCAGTTTA+TGG + tig0025713:47660-47679 Msa1424490:CDS 50.0%
GTATGTGGTTGCATCACCCT+AGG + tig0025713:47689-47708 Msa1424490:CDS 50.0%
CATCGTTTGCCACGTTGTTG+GGG - tig0025713:47928-47947 None:intergenic 50.0%
GCATCGTTTGCCACGTTGTT+GGG - tig0025713:47929-47948 None:intergenic 50.0%
AGCATCGTTTGCCACGTTGT+TGG - tig0025713:47930-47949 None:intergenic 50.0%
GTGGCAAACGATGCTGACAA+GGG + tig0025713:47935-47954 Msa1424490:intron 50.0%
TCATTGAGGTCTAGCGCAAG+TGG + tig0025713:48336-48355 Msa1424490:intron 50.0%
AAGCCAGAGTTGGATGCTCT+TGG + tig0025713:48572-48591 Msa1424490:CDS 50.0%
TGGTGCATCCTTATGGGCAA+AGG + tig0025713:48625-48644 Msa1424490:CDS 50.0%
GGTGCATCCTTATGGGCAAA+GGG + tig0025713:48626-48645 Msa1424490:CDS 50.0%
CTTGTAGCCCTTTGCCCATA+AGG - tig0025713:48636-48655 None:intergenic 50.0%
AGCTTCTTGAGGGAGCTTGT+TGG - tig0025713:48957-48976 None:intergenic 50.0%
! ATCTAGAACCCCTGCAACCA+GGG - tig0025713:49297-49316 None:intergenic 50.0%
!!! GGCTAGTTTTCTGGCGATGG+TGG - tig0025713:47350-47369 None:intergenic 55.0%
GGGAGTGAGAGTAATGGCTC+TGG - tig0025713:47371-47390 None:intergenic 55.0%
! GGCGTTGGGAGTGAGAGTAA+TGG - tig0025713:47377-47396 None:intergenic 55.0%
! ATGGCGGAGATGATGGCGTT+GGG - tig0025713:47391-47410 None:intergenic 55.0%
! TATGGCGGAGATGATGGCGT+TGG - tig0025713:47392-47411 None:intergenic 55.0%
AACGCCATCATCTCCGCCAT+AGG + tig0025713:47391-47410 Msa1424490:CDS 55.0%
! GCTTCCTATGGCGGAGATGA+TGG - tig0025713:47398-47417 None:intergenic 55.0%
TATGGAGCGGCTTCCTATGG+CGG - tig0025713:47407-47426 None:intergenic 55.0%
GGTTGTGGAGGATTCAGGTG+TGG + tig0025713:47498-47517 Msa1424490:CDS 55.0%
ACCTCACGTGCAGACTCGTT+GGG - tig0025713:47543-47562 None:intergenic 55.0%
AACGAGTCTGCACGTGAGGT+GGG + tig0025713:47543-47562 Msa1424490:CDS 55.0%
CGTGGCAAACGATGCTGACA+AGG + tig0025713:47934-47953 Msa1424490:intron 55.0%
!! GCACCAAGAGCATCCAACTC+TGG - tig0025713:48578-48597 None:intergenic 55.0%
!! TTGGATGCTCTTGGTGCCCT+TGG + tig0025713:48581-48600 Msa1424490:CDS 55.0%
! GTGCCCTTGGTGACTTAGCA+TGG + tig0025713:48594-48613 Msa1424490:CDS 55.0%
TGGGTGGAATGTGAGACCAG+AGG + tig0025713:48919-48938 Msa1424490:CDS 55.0%
! GATCTAGAACCCCTGCAACC+AGG - tig0025713:49298-49317 None:intergenic 55.0%
!!! GGCTAGTTTTCTGGCGATGG+TGG - tig0025713:47350-47369 None:intergenic 55.0%
GGGAGTGAGAGTAATGGCTC+TGG - tig0025713:47371-47390 None:intergenic 55.0%
! GGCGTTGGGAGTGAGAGTAA+TGG - tig0025713:47377-47396 None:intergenic 55.0%
! ATGGCGGAGATGATGGCGTT+GGG - tig0025713:47391-47410 None:intergenic 55.0%
! TATGGCGGAGATGATGGCGT+TGG - tig0025713:47392-47411 None:intergenic 55.0%
AACGCCATCATCTCCGCCAT+AGG + tig0025713:47391-47410 Msa1424490:CDS 55.0%
! GCTTCCTATGGCGGAGATGA+TGG - tig0025713:47398-47417 None:intergenic 55.0%
TATGGAGCGGCTTCCTATGG+CGG - tig0025713:47407-47426 None:intergenic 55.0%
GGTTGTGGAGGATTCAGGTG+TGG + tig0025713:47498-47517 Msa1424490:CDS 55.0%
ACCTCACGTGCAGACTCGTT+GGG - tig0025713:47543-47562 None:intergenic 55.0%
AACGAGTCTGCACGTGAGGT+GGG + tig0025713:47543-47562 Msa1424490:CDS 55.0%
CGTGGCAAACGATGCTGACA+AGG + tig0025713:47934-47953 Msa1424490:intron 55.0%
!! GCACCAAGAGCATCCAACTC+TGG - tig0025713:48578-48597 None:intergenic 55.0%
!! TTGGATGCTCTTGGTGCCCT+TGG + tig0025713:48581-48600 Msa1424490:CDS 55.0%
! GTGCCCTTGGTGACTTAGCA+TGG + tig0025713:48594-48613 Msa1424490:CDS 55.0%
TGGGTGGAATGTGAGACCAG+AGG + tig0025713:48919-48938 Msa1424490:CDS 55.0%
! GATCTAGAACCCCTGCAACC+AGG - tig0025713:49298-49317 None:intergenic 55.0%
ACGTGCAGACTCGTTGGGAG+AGG - tig0025713:47538-47557 None:intergenic 60.0%
TCCCAACGAGTCTGCACGTG+AGG + tig0025713:47539-47558 Msa1424490:CDS 60.0%
CACCTCACGTGCAGACTCGT+TGG - tig0025713:47544-47563 None:intergenic 60.0%
CAACGAGTCTGCACGTGAGG+TGG + tig0025713:47542-47561 Msa1424490:CDS 60.0%
! GCATGTGCTGGTGGAGAAGC+CGG + tig0025713:47591-47610 Msa1424490:CDS 60.0%
GAAGCCGGCAGCTCTTGATG+TGG + tig0025713:47606-47625 Msa1424490:CDS 60.0%
TCCGCCACATCAAGAGCTGC+CGG - tig0025713:47613-47632 None:intergenic 60.0%
TCCCGACGTCACACGAAACG+CGG + tig0025713:48679-48698 Msa1424490:CDS 60.0%
ACGTGCAGACTCGTTGGGAG+AGG - tig0025713:47538-47557 None:intergenic 60.0%
TCCCAACGAGTCTGCACGTG+AGG + tig0025713:47539-47558 Msa1424490:CDS 60.0%
CACCTCACGTGCAGACTCGT+TGG - tig0025713:47544-47563 None:intergenic 60.0%
CAACGAGTCTGCACGTGAGG+TGG + tig0025713:47542-47561 Msa1424490:CDS 60.0%
! GCATGTGCTGGTGGAGAAGC+CGG + tig0025713:47591-47610 Msa1424490:CDS 60.0%
GAAGCCGGCAGCTCTTGATG+TGG + tig0025713:47606-47625 Msa1424490:CDS 60.0%
TCCGCCACATCAAGAGCTGC+CGG - tig0025713:47613-47632 None:intergenic 60.0%
TCCCGACGTCACACGAAACG+CGG + tig0025713:48679-48698 Msa1424490:CDS 60.0%
! TGGCGATGGTGGCACAGCCT+AGG - tig0025713:47339-47358 None:intergenic 65.0%
GAGTCTGCACGTGAGGTGGG+CGG + tig0025713:47546-47565 Msa1424490:CDS 65.0%
GCCGGCAGCTCTTGATGTGG+CGG + tig0025713:47609-47628 Msa1424490:CDS 65.0%
TCGTGTGACGTCGGGAAGCG+CGG - tig0025713:48675-48694 None:intergenic 65.0%
GCCGCGTTTCGTGTGACGTC+GGG - tig0025713:48683-48702 None:intergenic 65.0%
GGCCGCGTTTCGTGTGACGT+CGG - tig0025713:48684-48703 None:intergenic 65.0%
GACGTCACACGAAACGCGGC+CGG + tig0025713:48683-48702 Msa1424490:CDS 65.0%
! TGGCGATGGTGGCACAGCCT+AGG - tig0025713:47339-47358 None:intergenic 65.0%
GAGTCTGCACGTGAGGTGGG+CGG + tig0025713:47546-47565 Msa1424490:CDS 65.0%
GCCGGCAGCTCTTGATGTGG+CGG + tig0025713:47609-47628 Msa1424490:CDS 65.0%
TCGTGTGACGTCGGGAAGCG+CGG - tig0025713:48675-48694 None:intergenic 65.0%
GCCGCGTTTCGTGTGACGTC+GGG - tig0025713:48683-48702 None:intergenic 65.0%
GGCCGCGTTTCGTGTGACGT+CGG - tig0025713:48684-48703 None:intergenic 65.0%
GACGTCACACGAAACGCGGC+CGG + tig0025713:48683-48702 Msa1424490:CDS 65.0%
! GGAAGCGCGGTGACGGTGGT+TGG - tig0025713:48662-48681 None:intergenic 70.0%
! GACGTCGGGAAGCGCGGTGA+CGG - tig0025713:48669-48688 None:intergenic 70.0%
! GGAAGCGCGGTGACGGTGGT+TGG - tig0025713:48662-48681 None:intergenic 70.0%
! GACGTCGGGAAGCGCGGTGA+CGG - tig0025713:48669-48688 None:intergenic 70.0%
! GTCGGGAAGCGCGGTGACGG+TGG - tig0025713:48666-48685 None:intergenic 75.0%
! GTCGGGAAGCGCGGTGACGG+TGG - tig0025713:48666-48685 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0025713 gene 47267 49440 47267 ID=Msa1424490;Name=Msa1424490
tig0025713 mRNA 47267 49440 47267 ID=Msa1424490-mRNA-1;Parent=Msa1424490;Name=Msa1424490-mRNA-1;_AED=0.01;_eAED=0.01;_QI=37|1|1|1|1|1|2|308|363
tig0025713 exon 47267 47774 47267 ID=Msa1424490-mRNA-1:exon:3790;Parent=Msa1424490-mRNA-1
tig0025713 exon 48512 49440 48512 ID=Msa1424490-mRNA-1:exon:3791;Parent=Msa1424490-mRNA-1
tig0025713 five_prime_UTR 47267 47303 47267 ID=Msa1424490-mRNA-1:five_prime_utr;Parent=Msa1424490-mRNA-1
tig0025713 CDS 47304 47774 47304 ID=Msa1424490-mRNA-1:cds;Parent=Msa1424490-mRNA-1
tig0025713 CDS 48512 49132 48512 ID=Msa1424490-mRNA-1:cds;Parent=Msa1424490-mRNA-1
tig0025713 three_prime_UTR 49133 49440 49133 ID=Msa1424490-mRNA-1:three_prime_utr;Parent=Msa1424490-mRNA-1
Gene Sequence

>Msa1424490

ATGACTGCGAAAGATACAGTGCGTTTTGGCATCCTAGGCTGTGCCACCATCGCCAGAAAACTAGCCAGAGCCATTACTCTCACTCCCAACGCCATCATCTCCGCCATAGGAAGCCGCTCCATATCAAAGGCATCAAAATTTGCCGTCGAAAACAGTTTACCAGCCAGTGTAAGAATCTATGGTAGCTATGATGAGGTTGTGGAGGATTCAGGTGTGGATGCAGTGTACATTCCTCTCCCAACGAGTCTGCACGTGAGGTGGGCGGTTGCTGCCGCGAGTAAGAAGAAGCATGTGCTGGTGGAGAAGCCGGCAGCTCTTGATGTGGCGGAGCTTGATTTGATCTTAGAAGCTTGTGAGGCCAATGGTGTGCAGTTTATGGATGGTTGTATGTGGTTGCATCACCCTAGGACTTTGAACATGGAACACTTGCTTGATCTTTCTAATTCCGATGGTATTGGACCCGTTCAATTTATCCATAGCACATCAACAATGCCAACAACTCAAGAATTCTTGGAGAATAACATTAGAGTAAAGCCAGAGTTGGATGCTCTTGGTGCCCTTGGTGACTTAGCATGGTACTGCATTGGTGCATCCTTATGGGCAAAGGGCTACAAGCTACCAACCACCGTCACCGCGCTTCCCGACGTCACACGAAACGCGGCCGGAGTCATATTATCAATCACATCTTCTTTGCAATGGGACCAACCAAATCAAACAGTTGCAAATATTCACTGCTCATTTCTTTCTCACACGTCCATGGACTTATCTATAAGTGGTTCCAATGGGTCTATGCATCTTAAGGACTTCATAATCCCATACAAGGAGACTAGTGCTTCATTTGACTTCACATTTGGTGCAAAATTTGTTGATCTTCACATTGGGTGGAATGTGAGACCAGAGGAAGTTCATGTTGCCAACAAGCTCCCTCAAGAAGCTTTGATGATACAAGAGTTTGCTAGGCTTGTTGCAAGTATTAGAGATTATGGGTCTCAGCCTTCTACAAAATGGCCAGAAATTAGTAGAAAGACTCAATTGGTAGTTGATGCTGTGAAAAAGTCTTTAGAGCTTGGCTGCAAACCTGTTTCCTTATAG

Protein sequence

>Msa1424490

MTAKDTVRFGILGCATIARKLARAITLTPNAIISAIGSRSISKASKFAVENSLPASVRIYGSYDEVVEDSGVDAVYIPLPTSLHVRWAVAAASKKKHVLVEKPAALDVAELDLILEACEANGVQFMDGCMWLHHPRTLNMEHLLDLSNSDGIGPVQFIHSTSTMPTTQEFLENNIRVKPELDALGALGDLAWYCIGASLWAKGYKLPTTVTALPDVTRNAAGVILSITSSLQWDQPNQTVANIHCSFLSHTSMDLSISGSNGSMHLKDFIIPYKETSASFDFTFGAKFVDLHIGWNVRPEEVHVANKLPQEALMIQEFARLVASIRDYGSQPSTKWPEISRKTQLVVDAVKKSLELGCKPVSL*