AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1123440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1123440 MtrunA17_Chr7g0262691 89.308 477 26 7 1 476 13 465 0.0 794
Msa1123440 MtrunA17_Chr1g0182791 55.750 513 156 23 11 466 24 522 9.18e-143 422
Msa1123440 MtrunA17_Chr3g0095391 32.596 497 224 19 11 449 21 464 8.81e-52 183
Msa1123440 MtrunA17_Chr1g0193321 55.195 154 52 5 199 347 403 544 1.16e-35 142
Msa1123440 MtrunA17_Chr7g0271251 39.583 240 114 7 183 406 357 581 4.81e-30 124
Msa1123440 MtrunA17_Chr1g0153241 68.293 82 22 1 261 342 85 162 5.34e-27 110
Msa1123440 MtrunA17_Chr5g0402031 70.423 71 17 1 270 340 114 180 1.05e-22 99.4
Msa1123440 MtrunA17_Chr7g0270871 47.368 133 46 5 253 372 186 307 1.07e-22 100
Msa1123440 MtrunA17_Chr7g0231461 58.228 79 33 0 245 323 281 359 1.37e-21 98.2
Msa1123440 MtrunA17_Chr4g0074161 45.161 93 48 1 264 353 209 301 3.84e-17 83.6
Msa1123440 MtrunA17_Chr1g0190731 50.000 70 35 0 264 333 196 265 9.32e-16 79.0
Msa1123440 MtrunA17_Chr3g0144641 32.867 143 58 4 264 368 194 336 4.79e-13 70.9
Msa1123440 MtrunA17_Chr7g0234761 31.214 173 103 6 160 321 211 378 1.59e-12 70.1
Msa1123440 MtrunA17_Chr1g0152131 39.000 100 57 2 227 325 229 325 4.74e-12 68.2
Msa1123440 MtrunA17_Chr8g0339091 36.585 123 66 3 224 335 244 365 1.03e-11 67.4
Msa1123440 MtrunA17_Chr4g0035101 52.542 59 27 1 264 321 146 204 3.34e-11 65.1
Msa1123440 MtrunA17_Chr5g0393721 34.259 108 53 2 258 364 220 310 3.57e-11 64.7
Msa1123440 MtrunA17_Chr5g0415291 30.380 158 104 4 187 341 40 194 4.55e-11 63.2
Msa1123440 MtrunA17_Chr8g0363921 50.000 60 29 1 263 321 153 212 5.21e-11 63.5
Msa1123440 MtrunA17_Chr8g0365941 49.206 63 31 1 264 325 308 370 6.93e-11 64.7
Msa1123440 MtrunA17_Chr5g0421111 49.206 63 31 1 264 325 368 430 8.65e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1123440 AT2G20180.4 41.922 489 166 27 17 457 36 454 1.24e-66 224
Msa1123440 AT2G20180.6 41.922 489 166 27 17 457 36 454 1.24e-66 224
Msa1123440 AT2G20180.2 41.922 489 166 27 17 457 36 454 1.24e-66 224
Msa1123440 AT2G20180.3 41.922 489 166 27 17 457 36 454 1.24e-66 224
Msa1123440 AT2G20180.7 42.523 428 151 23 71 457 10 383 4.85e-59 201
Msa1123440 AT2G20180.1 42.523 428 151 23 71 457 10 383 4.85e-59 201
Msa1123440 AT2G20180.5 42.523 428 151 23 71 457 10 383 4.85e-59 201
Msa1123440 AT4G28800.1 34.505 455 215 18 14 444 16 411 1.99e-52 185
Msa1123440 AT2G20180.8 43.109 341 120 18 17 321 36 338 8.78e-51 177
Msa1123440 AT4G28800.2 33.481 451 213 17 17 444 31 417 4.19e-49 176
Msa1123440 AT4G28790.1 34.271 391 191 15 11 372 18 371 9.05e-41 152
Msa1123440 AT4G28790.2 33.038 339 182 10 11 325 18 335 3.59e-33 129
Msa1123440 AT4G28811.1 34.519 478 238 19 16 464 107 538 6.62e-33 132
Msa1123440 AT1G09530.3 58.065 124 38 4 231 346 303 420 1.36e-30 125
Msa1123440 AT1G09530.2 58.065 124 38 4 231 346 303 420 1.36e-30 125
Msa1123440 AT1G09530.5 58.065 124 38 4 231 346 303 420 1.36e-30 125
Msa1123440 AT1G09530.1 58.065 124 38 4 231 346 303 420 1.36e-30 125
Msa1123440 AT1G09530.4 58.065 124 38 4 231 346 303 420 1.36e-30 125
Msa1123440 AT1G09530.6 58.065 124 38 4 231 346 303 420 1.36e-30 125
Msa1123440 AT2G46970.2 48.529 136 54 5 230 359 157 282 9.49e-28 115
Msa1123440 AT2G46970.3 48.529 136 54 5 230 359 166 291 1.41e-27 115
Msa1123440 AT2G46970.1 48.529 136 54 5 230 359 188 313 1.57e-27 115
Msa1123440 AT3G59060.1 56.154 130 37 4 229 344 212 335 2.31e-26 112
Msa1123440 AT3G59060.3 56.154 130 37 4 229 344 212 335 2.54e-26 112
Msa1123440 AT3G59060.2 56.154 130 37 4 229 344 212 335 2.54e-26 112
Msa1123440 AT3G59060.4 56.154 130 37 4 229 344 212 335 2.54e-26 112
Msa1123440 AT2G43010.4 56.911 123 47 2 223 344 217 334 7.02e-26 110
Msa1123440 AT2G43010.1 56.911 123 47 2 223 344 217 334 8.20e-26 110
Msa1123440 AT2G43010.2 56.911 123 47 2 223 344 217 334 8.33e-26 110
Msa1123440 AT4G28815.2 37.949 195 68 6 260 452 67 210 9.67e-26 105
Msa1123440 AT2G43010.3 56.911 123 47 2 223 344 224 341 1.08e-25 110
Msa1123440 AT2G43010.5 56.911 123 47 2 223 344 259 376 1.15e-25 110
Msa1123440 AT4G36930.1 58.036 112 38 2 236 342 161 268 1.64e-25 108
Msa1123440 AT4G28815.1 38.144 194 67 6 261 452 144 286 3.75e-25 106
Msa1123440 AT5G67110.1 62.195 82 27 1 262 343 88 165 6.37e-25 103
Msa1123440 AT4G00050.2 55.814 86 35 1 243 328 90 172 1.06e-21 95.9
Msa1123440 AT4G00050.3 55.814 86 35 1 243 328 192 274 2.51e-21 96.7
Msa1123440 AT4G00050.1 55.814 86 35 1 243 328 192 274 2.58e-21 96.7
Msa1123440 AT3G62090.1 42.857 140 64 5 263 398 167 294 1.45e-18 87.8
Msa1123440 AT3G62090.2 42.857 140 64 5 263 398 184 311 1.90e-18 87.4
Msa1123440 AT2G24260.2 56.923 65 28 0 264 328 38 102 3.45e-18 84.7
Msa1123440 AT2G24260.1 56.923 65 28 0 264 328 141 205 1.08e-17 85.1
Msa1123440 AT4G30980.1 55.385 65 29 0 264 328 133 197 2.32e-17 83.6
Msa1123440 AT4G30980.2 55.385 65 29 0 264 328 181 245 5.88e-17 83.2
Msa1123440 AT5G58010.1 50.725 69 34 0 264 332 102 170 1.68e-16 80.9
Msa1123440 AT5G61270.1 39.516 124 59 3 222 341 128 239 4.12e-13 71.2
Msa1123440 AT5G50915.3 27.358 212 131 7 191 386 57 261 6.09e-13 69.7
Msa1123440 AT5G50915.4 27.358 212 131 7 191 386 57 261 6.09e-13 69.7
Msa1123440 AT5G61270.2 39.516 124 59 3 222 341 40 151 6.84e-13 69.7
Msa1123440 AT5G61270.3 39.516 124 59 3 222 341 40 151 6.84e-13 69.7
Msa1123440 AT1G02340.2 36.885 122 58 5 275 395 134 237 9.35e-13 69.3
Msa1123440 AT5G50915.1 27.358 212 131 7 191 386 57 261 1.08e-12 69.3
Msa1123440 AT5G50915.2 27.358 212 131 7 191 386 57 261 1.08e-12 69.3
Msa1123440 AT1G02340.1 36.885 122 58 5 275 395 141 244 1.10e-12 69.3
Msa1123440 AT3G23690.1 38.318 107 61 3 223 325 151 256 4.10e-12 68.6
Msa1123440 AT4G28790.6 28.179 291 164 10 11 277 18 287 5.19e-12 67.4
Msa1123440 AT4G28790.3 28.179 291 164 10 11 277 18 287 5.19e-12 67.4
Msa1123440 AT4G28790.4 28.179 291 164 10 11 277 18 287 5.19e-12 67.4
Msa1123440 AT1G59640.1 43.182 88 42 3 263 348 138 219 2.21e-11 65.1
Msa1123440 AT3G07340.2 35.294 119 67 3 208 325 214 323 2.27e-11 66.6
Msa1123440 AT1G59640.2 31.944 144 84 4 213 348 82 219 2.42e-11 65.9
Msa1123440 AT5G62610.2 42.683 82 43 3 264 341 156 237 3.69e-11 64.7
Msa1123440 AT5G62610.1 42.683 82 43 3 264 341 156 237 3.69e-11 64.7
Msa1123440 AT1G10120.2 41.860 86 45 2 245 325 186 271 4.04e-11 65.1
Msa1123440 AT1G10120.1 41.860 86 45 2 245 325 186 271 4.04e-11 65.1
Msa1123440 AT3G07340.1 35.294 119 67 3 208 325 214 323 4.25e-11 65.9
Msa1123440 AT1G25330.1 39.241 79 47 1 256 333 99 177 4.68e-11 63.2
Msa1123440 AT5G48560.2 49.206 63 31 1 264 325 304 366 5.95e-11 65.1
Msa1123440 AT5G48560.1 49.206 63 31 1 264 325 304 366 6.38e-11 65.1
Msa1123440 AT4G36540.2 34.188 117 53 3 220 321 95 202 6.91e-11 63.9
Msa1123440 AT1G68920.3 49.206 63 31 1 264 325 305 367 6.96e-11 65.1
Msa1123440 AT4G36540.1 34.188 117 53 3 220 321 95 202 7.10e-11 63.9
Msa1123440 AT1G68920.1 49.206 63 31 1 264 325 306 368 7.16e-11 65.1
Msa1123440 AT1G68920.4 49.206 63 31 1 264 325 306 368 7.16e-11 65.1
Msa1123440 AT1G68920.2 49.206 63 31 1 264 325 306 368 7.16e-11 65.1
Msa1123440 AT1G26260.5 34.483 116 59 3 226 325 152 266 9.03e-11 64.3

Find 168 sgRNAs with CRISPR-Local

Find 475 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACCTGACTGGCGGGTTTC+TGG 0.085323 7_3:+74274625 None:intergenic
TGTCCTGTGTTATGGGTTTC+TGG 0.091136 7_3:-74274528 Msa1123440:CDS
TTTGCCTGCAGCCGCGAATT+TGG 0.127478 7_3:-74276303 Msa1123440:CDS
TGATAAGGATCACTGAAATT+TGG 0.152435 7_3:+74276143 None:intergenic
CTGATTTGCTGCTTGCATTC+TGG 0.157146 7_3:+74276223 None:intergenic
ATTCTGTTTACAAAATAAAT+TGG 0.159492 7_3:-74274003 Msa1123440:three_prime_UTR
TTGCCTGCAGCCGCGAATTT+GGG 0.259006 7_3:-74276302 Msa1123440:CDS
ATAGCTCTTGTCCTGTGTTA+TGG 0.282189 7_3:-74274536 Msa1123440:intron
AAAACTTGGCATACTGTATT+AGG 0.288340 7_3:+74274138 None:intergenic
CTTCTACTCCCTTCCTCTTT+CGG 0.289745 7_3:+74279220 None:intergenic
CACCGAAGTGGCGGTGGTTT+CGG 0.296809 7_3:-74279316 Msa1123440:CDS
CAACCCTCTCTGAGAGATTA+TGG 0.303417 7_3:+74277418 None:intergenic
TAGCTCTTGTCCTGTGTTAT+GGG 0.311035 7_3:-74274535 Msa1123440:CDS
GATGGGGATGGGTATGGAAA+TGG 0.320817 7_3:-74276375 Msa1123440:CDS
ATATTGGGAAATGGCATTAC+TGG 0.322002 7_3:+74276341 None:intergenic
GGGAGTAGAAGCGGAGGAAT+GGG 0.328574 7_3:-74279208 Msa1123440:CDS
GATAAGGATCACTGAAATTT+GGG 0.328825 7_3:+74276144 None:intergenic
GGCATATACTGCTGGATTCC+AGG 0.330279 7_3:+74276419 None:intergenic
ACTTATACCTCGATCTAATA+AGG 0.337045 7_3:-74277263 Msa1123440:intron
TCAAGAGGCCTGCTGACATT+TGG 0.353245 7_3:+74274652 None:intergenic
AAGAAAATGAAATGGCTTCA+TGG 0.355100 7_3:-74279677 Msa1123440:CDS
AGCAGAACCGGATAACATAT+TGG 0.356663 7_3:+74276325 None:intergenic
AGGGAGTAGAAGCGGAGGAA+TGG 0.360376 7_3:-74279209 Msa1123440:CDS
TTGGAATGGGAATGGGGATG+GGG 0.361443 7_3:-74276391 Msa1123440:CDS
TTCTTCAGATGACGGTGGTT+TGG 0.379401 7_3:+74279804 None:intergenic
TTCTGTTTACAAAATAAATT+GGG 0.386150 7_3:-74274002 Msa1123440:three_prime_UTR
TTCAAAATTGACGACGGTCC+TGG 0.387225 7_3:+74279447 None:intergenic
ATGGGGATGGGTATGGAAAT+GGG 0.393065 7_3:-74276374 Msa1123440:CDS
CCATTTCCCAATATGTTATC+CGG 0.395626 7_3:-74276332 Msa1123440:CDS
CAGAATGCAAGCAGCAAATC+AGG 0.395981 7_3:-74276222 Msa1123440:CDS
GGCTGCAGGCAAAGCAGAAC+CGG 0.401251 7_3:+74276313 None:intergenic
AATGGGGATGGGGATGGGTA+TGG 0.401940 7_3:-74276381 Msa1123440:CDS
AAGCGGAAAAGTTACATGAT+TGG 0.418255 7_3:+74279951 None:intergenic
TTCCGTTACACTACAAAACT+TGG 0.421479 7_3:+74274124 None:intergenic
GCAGAACCGGATAACATATT+GGG 0.422468 7_3:+74276326 None:intergenic
GATCCTTATCAACAATATCT+TGG 0.428452 7_3:-74276131 Msa1123440:CDS
GGTCCCAAATTCGCGGCTGC+AGG 0.429443 7_3:+74276299 None:intergenic
ATGAGATCATGGAGCTGTTA+TGG 0.431567 7_3:-74279854 Msa1123440:CDS
TATACTACTAGCTCTCAATA+TGG 0.434563 7_3:-74274275 Msa1123440:CDS
CAACTGTTGGCATATACTGC+TGG 0.435351 7_3:+74276411 None:intergenic
TTGTTATTAACCGTCGGCGG+CGG 0.436019 7_3:+74279600 None:intergenic
CTTCATGCAAGAAAATGAAA+TGG 0.444338 7_3:-74279685 Msa1123440:CDS
CCAACAGTTGGAATGGGAAT+GGG 0.446678 7_3:-74276398 Msa1123440:CDS
TGAATATTTCGAATCTCAAA+TGG 0.447818 7_3:-74280006 Msa1123440:exon
ACATGGTAAACAACCAGATC+TGG 0.451429 7_3:+74274492 None:intergenic
CGGCGGCGGGTTAAGGAAAT+CGG 0.453500 7_3:+74279614 None:intergenic
GTTGGAATGGGAATGGGGAT+GGG 0.455509 7_3:-74276392 Msa1123440:CDS
GGTCCAAGATATTGTTGATA+AGG 0.461439 7_3:+74276128 None:intergenic
ATGGGAATGGGGATGGGGAT+GGG 0.461709 7_3:-74276386 Msa1123440:CDS
TGCTCCGCTACCTTCCCAAC+CGG 0.462532 7_3:+74279246 None:intergenic
AATGGGAATGGGGATGGGGA+TGG 0.465811 7_3:-74276387 Msa1123440:CDS
CCGGATAACATATTGGGAAA+TGG 0.466866 7_3:+74276332 None:intergenic
CCCATTCCCATTCCAACTGT+TGG 0.469499 7_3:+74276398 None:intergenic
CGGGTTTCTGGTTTCTCAAG+AGG 0.469774 7_3:+74274637 None:intergenic
ATGGTACCTATGATGTTTCC+TGG 0.471988 7_3:-74276437 Msa1123440:CDS
TAGCAGTGAAGAAGCTGAAC+CGG 0.479213 7_3:-74279265 Msa1123440:CDS
GGTTGGGAAGGTAGCGGAGC+AGG 0.479306 7_3:-74279244 Msa1123440:CDS
GTTAAGGAAATCGGTGGAAA+AGG 0.482894 7_3:+74279623 None:intergenic
AGTTGGAATGGGAATGGGGA+TGG 0.484679 7_3:-74276393 Msa1123440:CDS
TTCGCAAAGTACGCGAAGTT+CGG 0.484693 7_3:+74279489 None:intergenic
TAGCGGAGCAGGACCGAAAG+AGG 0.484786 7_3:-74279233 Msa1123440:CDS
TAAACAGAATAGTGTAAATG+AGG 0.486055 7_3:+74274016 None:intergenic
GACGATTCAACTCGCGGCGG+AGG 0.486968 7_3:-74279759 Msa1123440:CDS
AGCACAGTGACTTCCAGATC+TGG 0.489837 7_3:-74274505 Msa1123440:CDS
AAACCAGAAACCCGCCAGTC+AGG 0.490474 7_3:-74274628 Msa1123440:intron
GCCAACAGTTGGAATGGGAA+TGG 0.490991 7_3:-74276399 Msa1123440:CDS
GTGAAGAAGCTGAACCGGTT+GGG 0.494334 7_3:-74279260 Msa1123440:CDS
GTCGCTGCAGTTACAAGTGC+AGG 0.496663 7_3:-74277080 Msa1123440:intron
AATAATGTGATCACCTCAGC+TGG 0.496940 7_3:-74276194 Msa1123440:CDS
GCATCAATTGAAACTGCATC+TGG 0.498748 7_3:+74276102 None:intergenic
TCGCGGCGGAGGAGCTTCAT+CGG 0.501663 7_3:-74279748 Msa1123440:CDS
CTATGCAGAGGCGTCGTGAT+CGG 0.503935 7_3:-74277315 Msa1123440:intron
TGGATTCCAGGAAACATCAT+AGG 0.504622 7_3:+74276431 None:intergenic
TGTTATTAACCGTCGGCGGC+GGG 0.505645 7_3:+74279601 None:intergenic
TTCATGACATGACATATTAG+TGG 0.506685 7_3:+74280063 None:intergenic
CAGTGCAGATGATGAGATCA+TGG 0.509755 7_3:-74279865 Msa1123440:CDS
GAGGCCTGCTGACATTTGGT+TGG 0.510685 7_3:+74274656 None:intergenic
GTCTGACAAAGCATCTATGC+TGG 0.514190 7_3:-74277125 Msa1123440:CDS
CGGAGGAGCTTCATCGGCGA+GGG 0.525295 7_3:-74279742 Msa1123440:CDS
GAGGAAGGGAGTAGAAGCGG+AGG 0.530303 7_3:-74279214 Msa1123440:CDS
TTTCCTTAACCCGCCGCCGA+CGG 0.530560 7_3:-74279610 Msa1123440:CDS
GTATATGCCAACAGTTGGAA+TGG 0.532323 7_3:-74276405 Msa1123440:CDS
GGAGCAGGACCGAAAGAGGA+AGG 0.532955 7_3:-74279229 Msa1123440:CDS
CACGGTGTAAGAACCGAGCC+AGG 0.537878 7_3:-74279465 Msa1123440:CDS
GATAAGGCAATTTACCTGAC+TGG 0.538094 7_3:+74274614 None:intergenic
AAAGAGGAAGGGAGTAGAAG+CGG 0.541766 7_3:-74279217 Msa1123440:CDS
GTGGAAAAGGTTTGTTCGAA+AGG 0.542709 7_3:+74279636 None:intergenic
TTGGCCTCTGTGTAACGACT+TGG 0.544571 7_3:+74279823 None:intergenic
TATATGCCAACAGTTGGAAT+GGG 0.544698 7_3:-74276404 Msa1123440:CDS
AGGAGACACCGAAGTGGCGG+TGG 0.545778 7_3:-74279322 Msa1123440:CDS
GGAGACGGTAAGAAGTTTAG+CGG 0.545838 7_3:-74279355 Msa1123440:CDS
TGCCGAAACCACCGCCACTT+CGG 0.546281 7_3:+74279314 None:intergenic
GATGCAGTTTCAATTGATGC+AGG 0.546912 7_3:-74276099 Msa1123440:intron
AAGAAGTTTAGCGGATCAAA+CGG 0.547113 7_3:-74279346 Msa1123440:CDS
GAACCTTGGTCCCAAATTCG+CGG 0.549158 7_3:+74276292 None:intergenic
AGGCAATTTACCTGACTGGC+GGG 0.549682 7_3:+74274618 None:intergenic
TCTCAAATGGATCAACAAGC+AGG 0.550538 7_3:-74279993 Msa1123440:exon
CAGCAGTATATGCCAACAGT+TGG 0.551794 7_3:-74276410 Msa1123440:CDS
ATGGAGCTGTTATGGCAAAA+CGG 0.553619 7_3:-74279846 Msa1123440:CDS
ACTTATGCAGATGATGTCCA+TGG 0.558617 7_3:-74276468 Msa1123440:CDS
AATTGACGACGGTCCTGGCT+CGG 0.563062 7_3:+74279452 None:intergenic
GAGCAGGACCGAAAGAGGAA+GGG 0.563277 7_3:-74279228 Msa1123440:CDS
TTCGCGTACTTTGCGAAGCA+CGG 0.563359 7_3:-74279483 Msa1123440:CDS
TGAACCAACCAAATGTCAGC+AGG 0.563946 7_3:-74274660 Msa1123440:CDS
AAAGGAGGCATCGCGAACCT+TGG 0.564003 7_3:+74276278 None:intergenic
GCTTGCATTCTGGATGAACC+AGG 0.565601 7_3:+74276233 None:intergenic
ACCGTCTCCGAAAACGCCGC+CGG 0.567574 7_3:+74279369 None:intergenic
GGAACATGCGGCATGTGGAA+AGG 0.567580 7_3:+74276260 None:intergenic
AAACAGAATAGTGTAAATGA+GGG 0.569975 7_3:+74274017 None:intergenic
AAAGAGATCTCGTGCTGCTG+AGG 0.571066 7_3:-74277442 Msa1123440:CDS
AGTGAAGAAGCTGAACCGGT+TGG 0.572237 7_3:-74279261 Msa1123440:CDS
AGGTGTAATTAAAAGATGAC+AGG 0.574178 7_3:+74280108 None:intergenic
TCATGACATGACATATTAGT+GGG 0.574614 7_3:+74280064 None:intergenic
CAACAGTTGGAATGGGAATG+GGG 0.575101 7_3:-74276397 Msa1123440:CDS
ATGCCGCATGTTCCTACACC+TGG 0.577972 7_3:-74276251 Msa1123440:CDS
CAATTGAAACTGCATCTGGT+GGG 0.578724 7_3:+74276106 None:intergenic
TACAATACAAACTCCGACGT+CGG 0.578904 7_3:-74279574 Msa1123440:CDS
AGGTACCATGCCACATCCCA+TGG 0.582211 7_3:+74276451 None:intergenic
GTGTAGGAACATGCGGCATG+TGG 0.583623 7_3:+74276255 None:intergenic
GCGGAGGAGCTTCATCGGCG+AGG 0.587970 7_3:-74279743 Msa1123440:CDS
ATTTACATACATATACTCGA+TGG 0.593255 7_3:+74273951 None:intergenic
AATTGAAACTGCATCTGGTG+GGG 0.594089 7_3:+74276107 None:intergenic
TCAAGGGCTGGCTATGCAGA+TGG 0.595639 7_3:-74274323 Msa1123440:intron
GCAGTGGTTTCTTCAGATGA+CGG 0.597213 7_3:+74279796 None:intergenic
CAGTTTACCTTATTAGATCG+AGG 0.600812 7_3:+74277256 None:intergenic
CAGATGATGTCCATGGGATG+TGG 0.601497 7_3:-74276461 Msa1123440:CDS
AGAAGCTGAACCGGTTGGGA+AGG 0.602490 7_3:-74279256 Msa1123440:CDS
CAGCCGCGAATTTGGGACCA+AGG 0.608681 7_3:-74276295 Msa1123440:CDS
GTACTGTTGTTATTAACCGT+CGG 0.610377 7_3:+74279594 None:intergenic
TGATACACCAGCTGTGATGC+CGG 0.610769 7_3:-74279388 Msa1123440:CDS
TCCGCCGCGAGTTGAATCGT+CGG 0.611337 7_3:+74279761 None:intergenic
GTGGGAAAGCAAATTAAAGT+CGG 0.617831 7_3:+74280082 None:intergenic
ACATGCGGCATGTGGAAAGG+AGG 0.621566 7_3:+74276263 None:intergenic
ATTCTGGATGAACCAGGTGT+AGG 0.621664 7_3:+74276239 None:intergenic
AATACAAACTCCGACGTCGG+TGG 0.622484 7_3:-74279571 Msa1123440:CDS
TGAATCATGTGTTCCAGCTG+AGG 0.623133 7_3:+74276181 None:intergenic
GAACCAGGTGTAGGAACATG+CGG 0.626770 7_3:+74276248 None:intergenic
AACTCCGACGATTCAACTCG+CGG 0.628283 7_3:-74279765 Msa1123440:CDS
ATGATTGGTTTCTTAAGACG+AGG 0.628834 7_3:+74279966 None:intergenic
TCAATTGAAACTGCATCTGG+TGG 0.633505 7_3:+74276105 None:intergenic
AAGGCAATTTACCTGACTGG+CGG 0.635377 7_3:+74274617 None:intergenic
TGAACCGGTTGGGAAGGTAG+CGG 0.635941 7_3:-74279250 Msa1123440:CDS
TCATCTGAAGAAACCACTGC+CGG 0.639590 7_3:-74279793 Msa1123440:CDS
AAGCAAATTAAAGTCGGTGA+AGG 0.641075 7_3:+74280088 None:intergenic
GGAAGGAGACACCGAAGTGG+CGG 0.644638 7_3:-74279325 Msa1123440:CDS
AGTTTAGCGGATCAAACGGA+AGG 0.644672 7_3:-74279342 Msa1123440:CDS
GATGTCCATGGGATGTGGCA+TGG 0.651695 7_3:-74276456 Msa1123440:CDS
GGTCCATAATCTCTCAGAGA+GGG 0.655203 7_3:-74277421 Msa1123440:intron
TGCGAGGGAATCAACAGTGG+TGG 0.655914 7_3:-74279418 Msa1123440:CDS
GTGGTTTCTTCAGATGACGG+TGG 0.658476 7_3:+74279799 None:intergenic
ATAGAATTACTTCATTGACA+TGG 0.663562 7_3:+74274475 None:intergenic
TTGGCATACTGTATTAGGAG+TGG 0.665219 7_3:+74274143 None:intergenic
TCACTGCTACTTGAACCGCC+CGG 0.678494 7_3:+74279279 None:intergenic
CGAGAAGGAACCACCGACGT+CGG 0.693171 7_3:+74279561 None:intergenic
TGCACGTGCCCTATCCTCCG+TGG 0.693280 7_3:+74279522 None:intergenic
AACGGAAGGAGACACCGAAG+TGG 0.694309 7_3:-74279328 Msa1123440:CDS
GGAATGGGAATATCAGAGCG+AGG 0.695426 7_3:-74279193 Msa1123440:intron
GCAAGCTAATCTATACTACA+CGG 0.696429 7_3:-74274077 Msa1123440:three_prime_UTR
TGGGTACAATAATTGAACAG+AGG 0.701316 7_3:-74273983 Msa1123440:three_prime_UTR
TACACCAGCTGTGATGCCGG+CGG 0.704142 7_3:-74279385 Msa1123440:CDS
CTTATGCAGATGATGTCCAT+GGG 0.705255 7_3:-74276467 Msa1123440:CDS
GCTCCAGAAACCCATAACAC+AGG 0.711170 7_3:+74274525 None:intergenic
GCAGTGTTCAAAATTGACGA+CGG 0.720480 7_3:+74279441 None:intergenic
TGCTGCGAGGGAATCAACAG+TGG 0.723697 7_3:-74279421 Msa1123440:CDS
CTGTTGTTATTAACCGTCGG+CGG 0.728995 7_3:+74279597 None:intergenic
AGGTCCATAATCTCTCAGAG+AGG 0.750556 7_3:-74277422 Msa1123440:CDS
ACGGCCAAGTCGTTACACAG+AGG 0.772761 7_3:-74279827 Msa1123440:CDS
TCCGACGATTCAACTCGCGG+CGG 0.774522 7_3:-74279762 Msa1123440:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAATGTTAATGAAAAA+TGG + chr7_3:74276411-74276430 None:intergenic 10.0%
!! ATGTTATGTTATATATAAAT+TGG - chr7_3:74279180-74279199 Msa1123440:intron 10.0%
!! TAACTATGAATAATTAATAA+TGG - chr7_3:74279793-74279812 Msa1123440:CDS 10.0%
!! TGTTAGAATAAAGAATAAAT+GGG + chr7_3:74276325-74276344 None:intergenic 15.0%
!!! TTTTATTTCTTGATAATGTA+AGG - chr7_3:74276778-74276797 Msa1123440:intron 15.0%
!!! TTTATTTCTTGATAATGTAA+GGG - chr7_3:74276779-74276798 Msa1123440:intron 15.0%
!! AAAGATTAGAAACAAAAATA+AGG + chr7_3:74276830-74276849 None:intergenic 15.0%
!! ATTACTCAAAATAATATATG+TGG + chr7_3:74278015-74278034 None:intergenic 15.0%
!!! AAATCATATTTTTGTTCAAA+AGG + chr7_3:74278833-74278852 None:intergenic 15.0%
!!! TTACTCATATTATTTTACTA+TGG - chr7_3:74279100-74279119 Msa1123440:intron 15.0%
!! ATTCTGTTTACAAAATAAAT+TGG - chr7_3:74279989-74280008 Msa1123440:CDS 15.0%
!! TTCTGTTTACAAAATAAATT+GGG - chr7_3:74279990-74280009 Msa1123440:CDS 15.0%
!! TCAAGTATTATCAATTATTG+AGG - chr7_3:74275291-74275310 Msa1123440:intron 20.0%
!! AACAAGTTAAAATGTATGTT+TGG + chr7_3:74275381-74275400 None:intergenic 20.0%
!! AAAGTTCAATTAATTACAGA+AGG - chr7_3:74275484-74275503 Msa1123440:intron 20.0%
!! AAGTTCAATTAATTACAGAA+GGG - chr7_3:74275485-74275504 Msa1123440:intron 20.0%
!! ACAGAAAGAAATAGAAAATA+AGG - chr7_3:74276049-74276068 Msa1123440:intron 20.0%
!! CAGAAAGAAATAGAAAATAA+GGG - chr7_3:74276050-74276069 Msa1123440:intron 20.0%
!! AATAAGGGATTCAATATATT+TGG - chr7_3:74276065-74276084 Msa1123440:intron 20.0%
!! ATTCAATATATTTGGCATTT+GGG - chr7_3:74276073-74276092 Msa1123440:intron 20.0%
!! TGTATAAATAGGAGAAATAA+AGG + chr7_3:74276235-74276254 None:intergenic 20.0%
!! CTGTTAGAATAAAGAATAAA+TGG + chr7_3:74276326-74276345 None:intergenic 20.0%
!! TTATCAAGAAATAAAACACT+GGG + chr7_3:74276774-74276793 None:intergenic 20.0%
!! ATTATCAAGAAATAAAACAC+TGG + chr7_3:74276775-74276794 None:intergenic 20.0%
!!! TTATTTCTTGATAATGTAAG+GGG - chr7_3:74276780-74276799 Msa1123440:intron 20.0%
!! TCAATTATCATAAATTTGCA+AGG + chr7_3:74278808-74278827 None:intergenic 20.0%
!! CATATAAATTAGCATATAGA+AGG + chr7_3:74278765-74278784 None:intergenic 20.0%
!! CATATAAATTAGCATATAGA+AGG - chr7_3:74278765-74278784 Msa1123440:intron 20.0%
!! TCAATTATCATAAATTTGCA+AGG - chr7_3:74278808-74278827 Msa1123440:intron 20.0%
!!! TATTTTACTTTTAACTCAAC+TGG - chr7_3:74279203-74279222 Msa1123440:CDS 20.0%
!!! ATTTTACTTTTAACTCAACT+GGG - chr7_3:74279204-74279223 Msa1123440:CDS 20.0%
!!! AAACATTTGATCGTTTTTAT+TGG + chr7_3:74279279-74279298 None:intergenic 20.0%
!!! TATTCTGTGTTTTAATGATT+TGG - chr7_3:74279431-74279450 Msa1123440:CDS 20.0%
!! ATTTGAATTGAAGGTTAAAT+TGG + chr7_3:74279552-74279571 None:intergenic 20.0%
!! CCATATTTGATGTATAATAA+AGG + chr7_3:74279585-74279604 None:intergenic 20.0%
!! CCTTTATTATACATCAAATA+TGG - chr7_3:74279582-74279601 Msa1123440:CDS 20.0%
!!! TTTTTTCTTTGATTATGTTC+AGG - chr7_3:74279619-74279638 Msa1123440:CDS 20.0%
!!! TTTGTGAAATAAAGTTTTTC+CGG + chr7_3:74279766-74279785 None:intergenic 20.0%
!!! AAACTTTATTTCACAAAACA+TGG - chr7_3:74279769-74279788 Msa1123440:CDS 20.0%
! TGAATATTTCGAATCTCAAA+TGG - chr7_3:74273986-74274005 Msa1123440:three_prime_UTR 25.0%
! TAATAAACGATAAGATGAAG+CGG + chr7_3:74274061-74274080 None:intergenic 25.0%
!!! TATTGATTGTAGTTTTCTAC+TGG + chr7_3:74274284-74274303 None:intergenic 25.0%
! CCTAGAAAAGTTTCTTTAAA+AGG + chr7_3:74275030-74275049 None:intergenic 25.0%
!!! CCTTTTAAAGAAACTTTTCT+AGG - chr7_3:74275027-74275046 Msa1123440:intron 25.0%
!!! TGTTTGGTTCTACTTTTTAA+GGG + chr7_3:74275365-74275384 None:intergenic 25.0%
!!! ATGTTTGGTTCTACTTTTTA+AGG + chr7_3:74275366-74275385 None:intergenic 25.0%
! GCATTGCATATTCTATTAAA+TGG - chr7_3:74275671-74275690 Msa1123440:intron 25.0%
! TAAATGATTATCGTAGCAAT+TGG + chr7_3:74275935-74275954 None:intergenic 25.0%
!! TTCTATTTCTTTCTGTATCT+AGG + chr7_3:74276045-74276064 None:intergenic 25.0%
! GATTCAATATATTTGGCATT+TGG - chr7_3:74276072-74276091 Msa1123440:intron 25.0%
! TTCAATATATTTGGCATTTG+GGG - chr7_3:74276074-74276093 Msa1123440:intron 25.0%
! AATAGACAGTACAAAAACAT+GGG + chr7_3:74276352-74276371 None:intergenic 25.0%
!! TTTTCAACATTTTTGTGAGA+TGG - chr7_3:74276383-74276402 Msa1123440:CDS 25.0%
! TCTAATTGTATTGCTGTAAA+AGG - chr7_3:74276475-74276494 Msa1123440:CDS 25.0%
!!! TGATCCACTGATATTTTTTT+GGG + chr7_3:74276525-74276544 None:intergenic 25.0%
!!! ATGATCCACTGATATTTTTT+TGG + chr7_3:74276526-74276545 None:intergenic 25.0%
!!! TTTTAAAGAAACTTCACATC+TGG - chr7_3:74277296-74277315 Msa1123440:CDS 25.0%
! ACTCAAAATAATATATGTGG+TGG + chr7_3:74278012-74278031 None:intergenic 25.0%
! TTGATATTTCGTTAACTACA+GGG + chr7_3:74279033-74279052 None:intergenic 25.0%
! ATTGATATTTCGTTAACTAC+AGG + chr7_3:74279032-74279051 None:intergenic 25.0%
! TGACTAACGTTTATCAATTT+CGG + chr7_3:74279002-74279021 None:intergenic 25.0%
! TATGCTTATACTGTCATTAT+AGG - chr7_3:74278509-74278528 Msa1123440:intron 25.0%
! TATGCTTATACTGTCATTAT+AGG + chr7_3:74278509-74278528 None:intergenic 25.0%
! TGACTAACGTTTATCAATTT+CGG - chr7_3:74279002-74279021 Msa1123440:intron 25.0%
! ATTGATATTTCGTTAACTAC+AGG - chr7_3:74279032-74279051 Msa1123440:intron 25.0%
! TTGATATTTCGTTAACTACA+GGG - chr7_3:74279033-74279052 Msa1123440:intron 25.0%
! ATAGAATTACTTCATTGACA+TGG + chr7_3:74279520-74279539 None:intergenic 25.0%
! TCAGTACAAATTTGAATTGA+AGG + chr7_3:74279561-74279580 None:intergenic 25.0%
! TGTTTGATTGTTTCAATCAA+GGG - chr7_3:74279653-74279672 Msa1123440:CDS 25.0%
!! TTGTGAAATAAAGTTTTTCC+GGG + chr7_3:74279765-74279784 None:intergenic 25.0%
! AAACAGAATAGTGTAAATGA+GGG + chr7_3:74279978-74279997 None:intergenic 25.0%
! TAAACAGAATAGTGTAAATG+AGG + chr7_3:74279979-74279998 None:intergenic 25.0%
! ATTTACATACATATACTCGA+TGG + chr7_3:74280044-74280063 None:intergenic 25.0%
AGGTGTAATTAAAAGATGAC+AGG + chr7_3:74273887-74273906 None:intergenic 30.0%
TCATGACATGACATATTAGT+GGG + chr7_3:74273931-74273950 None:intergenic 30.0%
TTCATGACATGACATATTAG+TGG + chr7_3:74273932-74273951 None:intergenic 30.0%
CTTCATGCAAGAAAATGAAA+TGG - chr7_3:74274307-74274326 Msa1123440:CDS 30.0%
AAGAAAATGAAATGGCTTCA+TGG - chr7_3:74274315-74274334 Msa1123440:CDS 30.0%
!!! GTTTGGTTCTACTTTTTAAG+GGG + chr7_3:74275364-74275383 None:intergenic 30.0%
! GCATATGGTTTAAAGTGTAA+GGG - chr7_3:74275425-74275444 Msa1123440:intron 30.0%
!! GGTTTTATGATTGAAGAAGT+TGG - chr7_3:74275506-74275525 Msa1123440:intron 30.0%
GAAAAATGCATTCTTGAACA+TGG - chr7_3:74275724-74275743 Msa1123440:intron 30.0%
TATCAAATTGTGCTTAGTTG+TGG - chr7_3:74275774-74275793 Msa1123440:intron 30.0%
TACGATAATCATTTAAGCTG+AGG - chr7_3:74275940-74275959 Msa1123440:intron 30.0%
! TTTGAAGTGAAAAAGAACTC+TGG + chr7_3:74276152-74276171 None:intergenic 30.0%
AGGGGTTATCATGTATAAAT+AGG + chr7_3:74276246-74276265 None:intergenic 30.0%
AGTGTAGTTGATTAAGTAGA+GGG + chr7_3:74276265-74276284 None:intergenic 30.0%
TAGTGTAGTTGATTAAGTAG+AGG + chr7_3:74276266-74276285 None:intergenic 30.0%
GTTAGAGTAATAGAGTAGTA+AGG + chr7_3:74276301-74276320 None:intergenic 30.0%
CAATAGACAGTACAAAAACA+TGG + chr7_3:74276353-74276372 None:intergenic 30.0%
!! GTGAAAATTTTAATGTTGCG+AGG + chr7_3:74276648-74276667 None:intergenic 30.0%
ACTTATACCTCGATCTAATA+AGG - chr7_3:74276729-74276748 Msa1123440:intron 30.0%
TCTATGCTCATAAATTGCTT+AGG - chr7_3:74277020-74277039 Msa1123440:intron 30.0%
AAAAGCAACTCAGTTGATTA+CGG - chr7_3:74277143-74277162 Msa1123440:intron 30.0%
! TTATAGCTTCCAAAGGTTTT+AGG - chr7_3:74277196-74277215 Msa1123440:intron 30.0%
TAACATAGGAAAGCTTAAGA+TGG - chr7_3:74277232-74277251 Msa1123440:intron 30.0%
TAAAGGTCACGAATATATAG+AGG + chr7_3:74277435-74277454 None:intergenic 30.0%
ATATTCGTGACCTTTACAAA+AGG - chr7_3:74277439-74277458 Msa1123440:CDS 30.0%
GTACTCAGAAGTAATATTAG+AGG + chr7_3:74277927-74277946 None:intergenic 30.0%
CAAAATAATATATGTGGTGG+TGG + chr7_3:74278009-74278028 None:intergenic 30.0%
TGATATTTCGTTAACTACAG+GGG + chr7_3:74279034-74279053 None:intergenic 30.0%
ACTAACGTTTATCAATTTCG+GGG + chr7_3:74279004-74279023 None:intergenic 30.0%
GACTAACGTTTATCAATTTC+GGG + chr7_3:74279003-74279022 None:intergenic 30.0%
GCATACTTAAATGATGACTA+AGG + chr7_3:74278615-74278634 None:intergenic 30.0%
AGTAGTGATAATAATGACAG+TGG - chr7_3:74278731-74278750 Msa1123440:intron 30.0%
GACTAACGTTTATCAATTTC+GGG - chr7_3:74279003-74279022 Msa1123440:intron 30.0%
ACTAACGTTTATCAATTTCG+GGG - chr7_3:74279004-74279023 Msa1123440:intron 30.0%
TGATATTTCGTTAACTACAG+GGG - chr7_3:74279034-74279053 Msa1123440:intron 30.0%
TCCTGCAAAATACTAAGATA+AGG + chr7_3:74279397-74279416 None:intergenic 30.0%
! TTGAAGGTTAAATTGGTTCT+TGG + chr7_3:74279545-74279564 None:intergenic 30.0%
CTGTTTGATTGTTTCAATCA+AGG - chr7_3:74279652-74279671 Msa1123440:CDS 30.0%
! TATACTACTAGCTCTCAATA+TGG - chr7_3:74279717-74279736 Msa1123440:CDS 30.0%
ACTAGTATTATTGTAAGTCC+CGG - chr7_3:74279744-74279763 Msa1123440:CDS 30.0%
AAAACTTGGCATACTGTATT+AGG + chr7_3:74279857-74279876 None:intergenic 30.0%
AAGCAAATTAAAGTCGGTGA+AGG + chr7_3:74273907-74273926 None:intergenic 35.0%
GTGGGAAAGCAAATTAAAGT+CGG + chr7_3:74273913-74273932 None:intergenic 35.0%
!! ATGATTGGTTTCTTAAGACG+AGG + chr7_3:74274029-74274048 None:intergenic 35.0%
AAGCGGAAAAGTTACATGAT+TGG + chr7_3:74274044-74274063 None:intergenic 35.0%
! GTACTGTTGTTATTAACCGT+CGG + chr7_3:74274401-74274420 None:intergenic 35.0%
! AAGAAGTTTAGCGGATCAAA+CGG - chr7_3:74274646-74274665 Msa1123440:CDS 35.0%
GAATCCAAAAGTTAAAGCAG+CGG + chr7_3:74274898-74274917 None:intergenic 35.0%
AACCGTAGCTTTCATAAAAG+CGG - chr7_3:74274948-74274967 Msa1123440:intron 35.0%
CGAATTTATCACGATACACA+TGG + chr7_3:74275004-74275023 None:intergenic 35.0%
!!! CTATTTTTTCCAGTAGCGTA+TGG - chr7_3:74275108-74275127 Msa1123440:intron 35.0%
! GGCATATGGTTTAAAGTGTA+AGG - chr7_3:74275424-74275443 Msa1123440:intron 35.0%
! ATGGTTTAAAGTGTAAGGGT+AGG - chr7_3:74275429-74275448 Msa1123440:intron 35.0%
! TGGTTTAAAGTGTAAGGGTA+GGG - chr7_3:74275430-74275449 Msa1123440:intron 35.0%
TTGGACATGATGAGGAATAT+TGG - chr7_3:74275525-74275544 Msa1123440:intron 35.0%
TGGACATGATGAGGAATATT+GGG - chr7_3:74275526-74275545 Msa1123440:intron 35.0%
! TTCTTGAACATGGTTAGTTG+TGG - chr7_3:74275734-74275753 Msa1123440:intron 35.0%
CAGTTTGGACATTACAATAG+TGG - chr7_3:74275971-74275990 Msa1123440:intron 35.0%
ACATTACAATAGTGGCGAAA+TGG - chr7_3:74275979-74275998 Msa1123440:intron 35.0%
TATTGAGACTTGTGAGTGAA+AGG + chr7_3:74276185-74276204 None:intergenic 35.0%
GTGTAGTTGATTAAGTAGAG+GGG + chr7_3:74276264-74276283 None:intergenic 35.0%
!!! GGATGTTGATTTTGAATCTG+CGG - chr7_3:74276496-74276515 Msa1123440:intron 35.0%
GAAGCCCAAAAAAATATCAG+TGG - chr7_3:74276518-74276537 Msa1123440:intron 35.0%
CAGTTTACCTTATTAGATCG+AGG + chr7_3:74276739-74276758 None:intergenic 35.0%
TGTCAGACTGAATTAAGAGT+AGG + chr7_3:74276855-74276874 None:intergenic 35.0%
!!! GCAGGTAGATTCTTCTTTTT+TGG - chr7_3:74276930-74276949 Msa1123440:intron 35.0%
GAATTTACAACACAAACGTG+AGG + chr7_3:74276978-74276997 None:intergenic 35.0%
TGGAAGCTATAAAGACACTT+GGG + chr7_3:74277188-74277207 None:intergenic 35.0%
TTGGAAGCTATAAAGACACT+TGG + chr7_3:74277189-74277208 None:intergenic 35.0%
AGTGTCTTTATAGCTTCCAA+AGG - chr7_3:74277189-74277208 Msa1123440:intron 35.0%
TCATTTCTAATGCGTGAACT+TGG + chr7_3:74277412-74277431 None:intergenic 35.0%
TATATGCCAACAGTTGGAAT+GGG - chr7_3:74277588-74277607 Msa1123440:intron 35.0%
ATATTGGGAAATGGCATTAC+TGG + chr7_3:74277654-74277673 None:intergenic 35.0%
CCATTTCCCAATATGTTATC+CGG - chr7_3:74277660-74277679 Msa1123440:intron 35.0%
GGTCCAAGATATTGTTGATA+AGG + chr7_3:74277867-74277886 None:intergenic 35.0%
ATATTTCGTTAACTACAGGG+GGG + chr7_3:74279036-74279055 None:intergenic 35.0%
GATATTTCGTTAACTACAGG+GGG + chr7_3:74279035-74279054 None:intergenic 35.0%
TAACGTTTATCAATTTCGGG+GGG + chr7_3:74279006-74279025 None:intergenic 35.0%
CTAACGTTTATCAATTTCGG+GGG + chr7_3:74279005-74279024 None:intergenic 35.0%
TGTTGGATGGAGGAAATTAA+CGG + chr7_3:74278968-74278987 None:intergenic 35.0%
TGTTGGATGGAGGAAATTAA+CGG - chr7_3:74278968-74278987 Msa1123440:intron 35.0%
CTAACGTTTATCAATTTCGG+GGG - chr7_3:74279005-74279024 Msa1123440:intron 35.0%
TAACGTTTATCAATTTCGGG+GGG - chr7_3:74279006-74279025 Msa1123440:intron 35.0%
GATATTTCGTTAACTACAGG+GGG - chr7_3:74279035-74279054 Msa1123440:intron 35.0%
ATATTTCGTTAACTACAGGG+GGG - chr7_3:74279036-74279055 Msa1123440:intron 35.0%
TCATTGCTTGATTCTACACA+TGG + chr7_3:74279315-74279334 None:intergenic 35.0%
! GCCTTATCTTAGTATTTTGC+AGG - chr7_3:74279393-74279412 Msa1123440:CDS 35.0%
!! TGCCAAGTTTTGTAGTGTAA+CGG - chr7_3:74279866-74279885 Msa1123440:intron 35.0%
TTCCGTTACACTACAAAACT+TGG + chr7_3:74279871-74279890 None:intergenic 35.0%
GCAAGCTAATCTATACTACA+CGG - chr7_3:74279915-74279934 Msa1123440:intron 35.0%
TGGGTACAATAATTGAACAG+AGG - chr7_3:74280009-74280028 Msa1123440:exon 35.0%
TCTCAAATGGATCAACAAGC+AGG - chr7_3:74273999-74274018 Msa1123440:three_prime_UTR 40.0%
ATGAGATCATGGAGCTGTTA+TGG - chr7_3:74274138-74274157 Msa1123440:CDS 40.0%
ATGGAGCTGTTATGGCAAAA+CGG - chr7_3:74274146-74274165 Msa1123440:CDS 40.0%
! GTGGAAAAGGTTTGTTCGAA+AGG + chr7_3:74274359-74274378 None:intergenic 40.0%
GTTAAGGAAATCGGTGGAAA+AGG + chr7_3:74274372-74274391 None:intergenic 40.0%
TACAATACAAACTCCGACGT+CGG - chr7_3:74274418-74274437 Msa1123440:intron 40.0%
GCAGTGTTCAAAATTGACGA+CGG + chr7_3:74274554-74274573 None:intergenic 40.0%
! AATTTTGAACACTGCTGCGA+GGG - chr7_3:74274559-74274578 Msa1123440:intron 40.0%
! TTCGGCAACTTTTGATGAAC+CGG - chr7_3:74274694-74274713 Msa1123440:intron 40.0%
GTGTGTGTGATTGTGCTTTA+TGG - chr7_3:74274925-74274944 Msa1123440:intron 40.0%
TGAGTTGCTCACACTATGTA+CGG + chr7_3:74275086-74275105 None:intergenic 40.0%
TTAGTTGCGACTTTACCACT+TGG - chr7_3:74275402-74275421 Msa1123440:intron 40.0%
TAGTTGCGACTTTACCACTT+GGG - chr7_3:74275403-74275422 Msa1123440:intron 40.0%
CTTTAAACCATATGCCCAAG+TGG + chr7_3:74275420-74275439 None:intergenic 40.0%
! GGTTTAAAGTGTAAGGGTAG+GGG - chr7_3:74275431-74275450 Msa1123440:intron 40.0%
TGAAGAAGTTGGACATGATG+AGG - chr7_3:74275517-74275536 Msa1123440:intron 40.0%
ACATGATGAGGAATATTGGG+TGG - chr7_3:74275529-74275548 Msa1123440:intron 40.0%
TTGTGAAAGCTGCTTAAGCA+TGG - chr7_3:74275571-74275590 Msa1123440:intron 40.0%
CAAAGAACTTTAGTCCAGCT+TGG + chr7_3:74275648-74275667 None:intergenic 40.0%
CAAATTGTGCTTAGTTGTGG+AGG - chr7_3:74275777-74275796 Msa1123440:intron 40.0%
CTTAGTTGTGGAGGTTGAAT+AGG - chr7_3:74275786-74275805 Msa1123440:intron 40.0%
! GTTGAATAGGCAGGGTTTTT+AGG - chr7_3:74275799-74275818 Msa1123440:intron 40.0%
!!! AATAGGCAGGGTTTTTAGGT+AGG - chr7_3:74275803-74275822 Msa1123440:intron 40.0%
AGGTAGGAATCCTTAGCAAT+TGG - chr7_3:74275819-74275838 Msa1123440:intron 40.0%
TCCTTAGCAATTGGCATAAG+CGG - chr7_3:74275828-74275847 Msa1123440:intron 40.0%
! CAAACTTTTCCTGCTTCATC+GGG + chr7_3:74275862-74275881 None:intergenic 40.0%
! CCAAACTTTTCCTGCTTCAT+CGG + chr7_3:74275863-74275882 None:intergenic 40.0%
CGATGAAGCAGGAAAAGTTT+GGG - chr7_3:74275861-74275880 Msa1123440:intron 40.0%
GCTGAGGACTAAAATCAGTT+TGG - chr7_3:74275956-74275975 Msa1123440:intron 40.0%
CACATTGCATTTCTATGCAG+AGG - chr7_3:74276665-74276684 Msa1123440:intron 40.0%
!! TTCTTGATAATGTAAGGGGC+AGG - chr7_3:74276784-74276803 Msa1123440:intron 40.0%
!! TCTTGATAATGTAAGGGGCA+GGG - chr7_3:74276785-74276804 Msa1123440:intron 40.0%
! CTTTTGTAATGTTCCACCAC+CGG + chr7_3:74277128-74277147 None:intergenic 40.0%
GGAAGCTATAAAGACACTTG+GGG + chr7_3:74277187-74277206 None:intergenic 40.0%
!!! TAGCTTCCAAAGGTTTTAGG+AGG - chr7_3:74277199-74277218 Msa1123440:intron 40.0%
!!! TTCCAAAGGTTTTAGGAGGA+TGG - chr7_3:74277203-74277222 Msa1123440:intron 40.0%
!!! TCCAAAGGTTTTAGGAGGAT+GGG - chr7_3:74277204-74277223 Msa1123440:intron 40.0%
GAGGATGGGTACTATAACAT+AGG - chr7_3:74277218-74277237 Msa1123440:intron 40.0%
TCACATCTGGAAATTGTGAG+AGG - chr7_3:74277309-74277328 Msa1123440:CDS 40.0%
CACATCTGGAAATTGTGAGA+GGG - chr7_3:74277310-74277329 Msa1123440:CDS 40.0%
! AGTGGCATGACCTTTTGTAA+AGG + chr7_3:74277452-74277471 None:intergenic 40.0%
!! CAACTTGCTACACTACATAG+TGG + chr7_3:74277470-74277489 None:intergenic 40.0%
CACTATGTAGTGTAGCAAGT+TGG - chr7_3:74277468-74277487 Msa1123440:CDS 40.0%
ACTTATGCAGATGATGTCCA+TGG - chr7_3:74277524-74277543 Msa1123440:intron 40.0%
CTTATGCAGATGATGTCCAT+GGG - chr7_3:74277525-74277544 Msa1123440:intron 40.0%
ATGGTACCTATGATGTTTCC+TGG - chr7_3:74277555-74277574 Msa1123440:intron 40.0%
TGGATTCCAGGAAACATCAT+AGG + chr7_3:74277564-74277583 None:intergenic 40.0%
GTATATGCCAACAGTTGGAA+TGG - chr7_3:74277587-74277606 Msa1123440:intron 40.0%
CCGGATAACATATTGGGAAA+TGG + chr7_3:74277663-74277682 None:intergenic 40.0%
GCAGAACCGGATAACATATT+GGG + chr7_3:74277669-74277688 None:intergenic 40.0%
AGCAGAACCGGATAACATAT+TGG + chr7_3:74277670-74277689 None:intergenic 40.0%
AATAATGTGATCACCTCAGC+TGG - chr7_3:74277798-74277817 Msa1123440:intron 40.0%
AATTGAAACTGCATCTGGTG+GGG + chr7_3:74277888-74277907 None:intergenic 40.0%
CAATTGAAACTGCATCTGGT+GGG + chr7_3:74277889-74277908 None:intergenic 40.0%
TCAATTGAAACTGCATCTGG+TGG + chr7_3:74277890-74277909 None:intergenic 40.0%
GCATCAATTGAAACTGCATC+TGG + chr7_3:74277893-74277912 None:intergenic 40.0%
GATGCAGTTTCAATTGATGC+AGG - chr7_3:74277893-74277912 Msa1123440:intron 40.0%
TTGTTGCACATGAGATCCAT+TGG - chr7_3:74277975-74277994 Msa1123440:intron 40.0%
!! ATAATATATGTGGTGGTGGC+AGG + chr7_3:74278005-74278024 None:intergenic 40.0%
AACGTTTATCAATTTCGGGG+GGG + chr7_3:74279007-74279026 None:intergenic 40.0%
AACGTTTATCAATTTCGGGG+GGG - chr7_3:74279007-74279026 Msa1123440:intron 40.0%
GATAAGGCAATTTACCTGAC+TGG + chr7_3:74279381-74279400 None:intergenic 40.0%
ATAGCTCTTGTCCTGTGTTA+TGG - chr7_3:74279456-74279475 Msa1123440:CDS 40.0%
TAGCTCTTGTCCTGTGTTAT+GGG - chr7_3:74279457-74279476 Msa1123440:CDS 40.0%
ACATGGTAAACAACCAGATC+TGG + chr7_3:74279503-74279522 None:intergenic 40.0%
TGATTGTTTCAATCAAGGGC+TGG - chr7_3:74279657-74279676 Msa1123440:CDS 40.0%
TTGGCATACTGTATTAGGAG+TGG + chr7_3:74279852-74279871 None:intergenic 40.0%
CAGTGCAGATGATGAGATCA+TGG - chr7_3:74274127-74274146 Msa1123440:exon 45.0%
! TTCTTCAGATGACGGTGGTT+TGG + chr7_3:74274191-74274210 None:intergenic 45.0%
GCAGTGGTTTCTTCAGATGA+CGG + chr7_3:74274199-74274218 None:intergenic 45.0%
TCATCTGAAGAAACCACTGC+CGG - chr7_3:74274199-74274218 Msa1123440:intron 45.0%
! GAATCGTCGGAGTTTTTCAC+CGG + chr7_3:74274221-74274240 None:intergenic 45.0%
! CTGTTGTTATTAACCGTCGG+CGG + chr7_3:74274398-74274417 None:intergenic 45.0%
TTCGCAAAGTACGCGAAGTT+CGG + chr7_3:74274506-74274525 None:intergenic 45.0%
TTCAAAATTGACGACGGTCC+TGG + chr7_3:74274548-74274567 None:intergenic 45.0%
! CAATTTTGAACACTGCTGCG+AGG - chr7_3:74274558-74274577 Msa1123440:intron 45.0%
GGAGACGGTAAGAAGTTTAG+CGG - chr7_3:74274637-74274656 Msa1123440:CDS 45.0%
! AGTTTAGCGGATCAAACGGA+AGG - chr7_3:74274650-74274669 Msa1123440:CDS 45.0%
! TCGGCAACTTTTGATGAACC+GGG - chr7_3:74274695-74274714 Msa1123440:intron 45.0%
TAGCAGTGAAGAAGCTGAAC+CGG - chr7_3:74274727-74274746 Msa1123440:intron 45.0%
CTTCTACTCCCTTCCTCTTT+CGG + chr7_3:74274775-74274794 None:intergenic 45.0%
AAAGAGGAAGGGAGTAGAAG+CGG - chr7_3:74274775-74274794 Msa1123440:intron 45.0%
AAAAGTTAAAGCAGCGGCGT+GGG + chr7_3:74274892-74274911 None:intergenic 45.0%
!!! GGCCGCTTTTATGAAAGCTA+CGG + chr7_3:74274953-74274972 None:intergenic 45.0%
GGTTGCATGGCAAGAAGAAT+TGG - chr7_3:74275129-74275148 Msa1123440:intron 45.0%
GACTTTACCACTTGGGCATA+TGG - chr7_3:74275410-74275429 Msa1123440:intron 45.0%
TAAAGTGTAAGGGTAGGGGT+AGG - chr7_3:74275435-74275454 Msa1123440:intron 45.0%
AAAGTGTAAGGGTAGGGGTA+GGG - chr7_3:74275436-74275455 Msa1123440:intron 45.0%
AGAACTTTAGTCCAGCTTGG+TGG + chr7_3:74275645-74275664 None:intergenic 45.0%
TTGTGGAGGTTGAATAGGCA+GGG - chr7_3:74275791-74275810 Msa1123440:intron 45.0%
ACCGCTTATGCCAATTGCTA+AGG + chr7_3:74275832-74275851 None:intergenic 45.0%
CCGATGAAGCAGGAAAAGTT+TGG - chr7_3:74275860-74275879 Msa1123440:intron 45.0%
AGGTCCATAATCTCTCAGAG+AGG - chr7_3:74276570-74276589 Msa1123440:intron 45.0%
GGTCCATAATCTCTCAGAGA+GGG - chr7_3:74276571-74276590 Msa1123440:intron 45.0%
! CAACCCTCTCTGAGAGATTA+TGG + chr7_3:74276577-74276596 None:intergenic 45.0%
CATAATCTCTCAGAGAGGGT+TGG - chr7_3:74276575-74276594 Msa1123440:intron 45.0%
! GTCTGACAAAGCATCTATGC+TGG - chr7_3:74276867-74276886 Msa1123440:intron 45.0%
ATAAAGACACTTGGGGAGGA+AGG + chr7_3:74277180-74277199 None:intergenic 45.0%
AGCTATAAAGACACTTGGGG+AGG + chr7_3:74277184-74277203 None:intergenic 45.0%
ACCCATCCTCCTAAAACCTT+TGG + chr7_3:74277208-74277227 None:intergenic 45.0%
CAGCATCTATGACTGTCTAG+TGG + chr7_3:74277342-74277361 None:intergenic 45.0%
CAACTGTTGGCATATACTGC+TGG + chr7_3:74277584-74277603 None:intergenic 45.0%
CAGCAGTATATGCCAACAGT+TGG - chr7_3:74277582-74277601 Msa1123440:intron 45.0%
CCAACAGTTGGAATGGGAAT+GGG - chr7_3:74277594-74277613 Msa1123440:intron 45.0%
CAACAGTTGGAATGGGAATG+GGG - chr7_3:74277595-74277614 Msa1123440:intron 45.0%
ATGGGGATGGGTATGGAAAT+GGG - chr7_3:74277618-74277637 Msa1123440:intron 45.0%
ATTCTGGATGAACCAGGTGT+AGG + chr7_3:74277756-74277775 None:intergenic 45.0%
!! CTGATTTGCTGCTTGCATTC+TGG + chr7_3:74277772-74277791 None:intergenic 45.0%
CAGAATGCAAGCAGCAAATC+AGG - chr7_3:74277770-74277789 Msa1123440:intron 45.0%
TGAATCATGTGTTCCAGCTG+AGG + chr7_3:74277814-74277833 None:intergenic 45.0%
ATTGACGCGCCTTGCAATTT+CGG + chr7_3:74279061-74279080 None:intergenic 45.0%
ACGTTTATCAATTTCGGGGG+GGG + chr7_3:74279008-74279027 None:intergenic 45.0%
ATGGAGGAAATTAACGGAGG+GGG + chr7_3:74278974-74278993 None:intergenic 45.0%
GATGGAGGAAATTAACGGAG+GGG + chr7_3:74278973-74278992 None:intergenic 45.0%
GGATGGAGGAAATTAACGGA+GGG + chr7_3:74278972-74278991 None:intergenic 45.0%
TGGATGGAGGAAATTAACGG+AGG + chr7_3:74278971-74278990 None:intergenic 45.0%
TAACTGCCACATCAGCATGT+TGG + chr7_3:74278951-74278970 None:intergenic 45.0%
TAACTGCCACATCAGCATGT+TGG - chr7_3:74278951-74278970 Msa1123440:intron 45.0%
TGGATGGAGGAAATTAACGG+AGG - chr7_3:74278971-74278990 Msa1123440:intron 45.0%
GGATGGAGGAAATTAACGGA+GGG - chr7_3:74278972-74278991 Msa1123440:intron 45.0%
GATGGAGGAAATTAACGGAG+GGG - chr7_3:74278973-74278992 Msa1123440:intron 45.0%
ATGGAGGAAATTAACGGAGG+GGG - chr7_3:74278974-74278993 Msa1123440:intron 45.0%
ATTGACGCGCCTTGCAATTT+CGG - chr7_3:74279061-74279080 Msa1123440:intron 45.0%
TGAACCAACCAAATGTCAGC+AGG - chr7_3:74279332-74279351 Msa1123440:CDS 45.0%
AAGGCAATTTACCTGACTGG+CGG + chr7_3:74279378-74279397 None:intergenic 45.0%
TGTCCTGTGTTATGGGTTTC+TGG - chr7_3:74279464-74279483 Msa1123440:CDS 45.0%
TTGGCCTCTGTGTAACGACT+TGG + chr7_3:74274172-74274191 None:intergenic 50.0%
! GTGGTTTCTTCAGATGACGG+TGG + chr7_3:74274196-74274215 None:intergenic 50.0%
AACTCCGACGATTCAACTCG+CGG - chr7_3:74274227-74274246 Msa1123440:intron 50.0%
! TTGTTATTAACCGTCGGCGG+CGG + chr7_3:74274395-74274414 None:intergenic 50.0%
AATACAAACTCCGACGTCGG+TGG - chr7_3:74274421-74274440 Msa1123440:intron 50.0%
TTCGCGTACTTTGCGAAGCA+CGG - chr7_3:74274509-74274528 Msa1123440:CDS 50.0%
TGATACACCAGCTGTGATGC+CGG - chr7_3:74274604-74274623 Msa1123440:intron 50.0%
! GCAACTTTTGATGAACCGGG+CGG - chr7_3:74274698-74274717 Msa1123440:intron 50.0%
AGTGAAGAAGCTGAACCGGT+TGG - chr7_3:74274731-74274750 Msa1123440:intron 50.0%
GTGAAGAAGCTGAACCGGTT+GGG - chr7_3:74274732-74274751 Msa1123440:intron 50.0%
GGAATGGGAATATCAGAGCG+AGG - chr7_3:74274799-74274818 Msa1123440:intron 50.0%
CAAAAGTTAAAGCAGCGGCG+TGG + chr7_3:74274893-74274912 None:intergenic 50.0%
!! CACGCCGCTGCTTTAACTTT+TGG - chr7_3:74274891-74274910 Msa1123440:intron 50.0%
TTGCTCACACTATGTACGGC+TGG + chr7_3:74275082-74275101 None:intergenic 50.0%
TCCAGTAGCGTATGGTTGCA+TGG - chr7_3:74275116-74275135 Msa1123440:intron 50.0%
AAGTGTAAGGGTAGGGGTAG+GGG - chr7_3:74275437-74275456 Msa1123440:intron 50.0%
GTTGTGGAGGTTGAATAGGC+AGG - chr7_3:74275790-74275809 Msa1123440:intron 50.0%
GTGATACTTCCCGATGAAGC+AGG - chr7_3:74275850-74275869 Msa1123440:intron 50.0%
GCATTTGGGGAGAAGACTTG+AGG - chr7_3:74276087-74276106 Msa1123440:intron 50.0%
! AAAGAGATCTCGTGCTGCTG+AGG - chr7_3:74276550-74276569 Msa1123440:intron 50.0%
CAGATGATGTCCATGGGATG+TGG - chr7_3:74277531-74277550 Msa1123440:intron 50.0%
GGCATATACTGCTGGATTCC+AGG + chr7_3:74277576-74277595 None:intergenic 50.0%
GCCAACAGTTGGAATGGGAA+TGG - chr7_3:74277593-74277612 Msa1123440:intron 50.0%
CCCATTCCCATTCCAACTGT+TGG + chr7_3:74277597-74277616 None:intergenic 50.0%
AGTTGGAATGGGAATGGGGA+TGG - chr7_3:74277599-74277618 Msa1123440:intron 50.0%
GTTGGAATGGGAATGGGGAT+GGG - chr7_3:74277600-74277619 Msa1123440:intron 50.0%
TTGGAATGGGAATGGGGATG+GGG - chr7_3:74277601-74277620 Msa1123440:intron 50.0%
GATGGGGATGGGTATGGAAA+TGG - chr7_3:74277617-74277636 Msa1123440:intron 50.0%
GAACCTTGGTCCCAAATTCG+CGG + chr7_3:74277703-74277722 None:intergenic 50.0%
GAACCAGGTGTAGGAACATG+CGG + chr7_3:74277747-74277766 None:intergenic 50.0%
GCTTGCATTCTGGATGAACC+AGG + chr7_3:74277762-74277781 None:intergenic 50.0%
!! TGCAATTTCGGGGGGGTATT+TGG + chr7_3:74279073-74279092 None:intergenic 50.0%
AATACCCCCCCGAAATTGCA+AGG - chr7_3:74278041-74278060 Msa1123440:intron 50.0%
TTGACGCGCCTTGCAATTTC+GGG + chr7_3:74279062-74279081 None:intergenic 50.0%
TTTATCAATTTCGGGGGGGG+GGG + chr7_3:74278115-74278134 None:intergenic 50.0%
GTTTATCAATTTCGGGGGGG+GGG + chr7_3:74279010-74279029 None:intergenic 50.0%
CGTTTATCAATTTCGGGGGG+GGG + chr7_3:74279009-74279028 None:intergenic 50.0%
TGGAGGAAATTAACGGAGGG+GGG + chr7_3:74278975-74278994 None:intergenic 50.0%
CACATCAGCATGTTGGATGG+AGG + chr7_3:74278958-74278977 None:intergenic 50.0%
CTCCATCCAACATGCTGATG+TGG - chr7_3:74278166-74278185 Msa1123440:intron 50.0%
TGCCACATCAGCATGTTGGA+TGG + chr7_3:74278955-74278974 None:intergenic 50.0%
CACTGCCACATGGTCAGAAA+AGG - chr7_3:74278208-74278227 Msa1123440:intron 50.0%
! GCATGCCTTTTCTGACCATG+TGG + chr7_3:74278910-74278929 None:intergenic 50.0%
! AAAAGGCATGCCACGTCAGA+GGG - chr7_3:74278225-74278244 Msa1123440:intron 50.0%
! AAAAGGCATGCCACGTCAGA+GGG + chr7_3:74278225-74278244 None:intergenic 50.0%
! GCATGCCTTTTCTGACCATG+TGG - chr7_3:74278910-74278929 Msa1123440:intron 50.0%
CACTGCCACATGGTCAGAAA+AGG + chr7_3:74278208-74278227 None:intergenic 50.0%
TGCCACATCAGCATGTTGGA+TGG - chr7_3:74278955-74278974 Msa1123440:intron 50.0%
CTCCATCCAACATGCTGATG+TGG + chr7_3:74278166-74278185 None:intergenic 50.0%
CACATCAGCATGTTGGATGG+AGG - chr7_3:74278958-74278977 Msa1123440:intron 50.0%
TGGAGGAAATTAACGGAGGG+GGG - chr7_3:74278975-74278994 Msa1123440:intron 50.0%
TTGACGCGCCTTGCAATTTC+GGG - chr7_3:74279062-74279081 Msa1123440:intron 50.0%
AATACCCCCCCGAAATTGCA+AGG + chr7_3:74278041-74278060 None:intergenic 50.0%
!! TGCAATTTCGGGGGGGTATT+TGG - chr7_3:74279073-74279092 Msa1123440:intron 50.0%
TCAAGAGGCCTGCTGACATT+TGG + chr7_3:74279343-74279362 None:intergenic 50.0%
!! CGGGTTTCTGGTTTCTCAAG+AGG + chr7_3:74279358-74279377 None:intergenic 50.0%
AGGCAATTTACCTGACTGGC+GGG + chr7_3:74279377-74279396 None:intergenic 50.0%
GCTCCAGAAACCCATAACAC+AGG + chr7_3:74279470-74279489 None:intergenic 50.0%
AGCACAGTGACTTCCAGATC+TGG - chr7_3:74279487-74279506 Msa1123440:CDS 50.0%
ACGGCCAAGTCGTTACACAG+AGG - chr7_3:74274165-74274184 Msa1123440:intron 55.0%
! TCGGAGTTTTTCACCGGCAG+TGG + chr7_3:74274215-74274234 None:intergenic 55.0%
TGTTATTAACCGTCGGCGGC+GGG + chr7_3:74274394-74274413 None:intergenic 55.0%
!! TACGCGAAGTTCGGTGTCTC+AGG + chr7_3:74274497-74274516 None:intergenic 55.0%
AATTGACGACGGTCCTGGCT+CGG + chr7_3:74274543-74274562 None:intergenic 55.0%
TGCTGCGAGGGAATCAACAG+TGG - chr7_3:74274571-74274590 Msa1123440:intron 55.0%
TGCGAGGGAATCAACAGTGG+TGG - chr7_3:74274574-74274593 Msa1123440:intron 55.0%
AACGGAAGGAGACACCGAAG+TGG - chr7_3:74274664-74274683 Msa1123440:CDS 55.0%
! TCACTGCTACTTGAACCGCC+CGG + chr7_3:74274716-74274735 None:intergenic 55.0%
AGAAGCTGAACCGGTTGGGA+AGG - chr7_3:74274736-74274755 Msa1123440:intron 55.0%
TGAACCGGTTGGGAAGGTAG+CGG - chr7_3:74274742-74274761 Msa1123440:intron 55.0%
GAGCAGGACCGAAAGAGGAA+GGG - chr7_3:74274764-74274783 Msa1123440:intron 55.0%
AGGGAGTAGAAGCGGAGGAA+TGG - chr7_3:74274783-74274802 Msa1123440:intron 55.0%
GGGAGTAGAAGCGGAGGAAT+GGG - chr7_3:74274784-74274803 Msa1123440:intron 55.0%
GCCATGCAACCATACGCTAC+TGG + chr7_3:74275120-74275139 None:intergenic 55.0%
TAAGGGTAGGGGTAGGGGTA+GGG - chr7_3:74275442-74275461 Msa1123440:intron 55.0%
GGGTAGGGTGATGTTTGAGC+AGG - chr7_3:74275457-74275476 Msa1123440:intron 55.0%
!! CTATGCAGAGGCGTCGTGAT+CGG - chr7_3:74276677-74276696 Msa1123440:intron 55.0%
GTCGCTGCAGTTACAAGTGC+AGG - chr7_3:74276912-74276931 Msa1123440:intron 55.0%
AGCTTGCACCATGCCACCAT+CGG - chr7_3:74277102-74277121 Msa1123440:CDS 55.0%
GATGTCCATGGGATGTGGCA+TGG - chr7_3:74277536-74277555 Msa1123440:intron 55.0%
AGGTACCATGCCACATCCCA+TGG + chr7_3:74277544-74277563 None:intergenic 55.0%
AATGGGAATGGGGATGGGGA+TGG - chr7_3:74277605-74277624 Msa1123440:intron 55.0%
ATGGGAATGGGGATGGGGAT+GGG - chr7_3:74277606-74277625 Msa1123440:intron 55.0%
AATGGGGATGGGGATGGGTA+TGG - chr7_3:74277611-74277630 Msa1123440:intron 55.0%
TTTGCCTGCAGCCGCGAATT+TGG - chr7_3:74277689-74277708 Msa1123440:intron 55.0%
TTGCCTGCAGCCGCGAATTT+GGG - chr7_3:74277690-74277709 Msa1123440:intron 55.0%
!! AAAGGAGGCATCGCGAACCT+TGG + chr7_3:74277717-74277736 None:intergenic 55.0%
ACATGCGGCATGTGGAAAGG+AGG + chr7_3:74277732-74277751 None:intergenic 55.0%
GGAACATGCGGCATGTGGAA+AGG + chr7_3:74277735-74277754 None:intergenic 55.0%
GTGTAGGAACATGCGGCATG+TGG + chr7_3:74277740-74277759 None:intergenic 55.0%
ATGCCGCATGTTCCTACACC+TGG - chr7_3:74277741-74277760 Msa1123440:intron 55.0%
! GGTGGTGGCAGGATATCCAA+TGG + chr7_3:74277994-74278013 None:intergenic 55.0%
TGACGCGCCTTGCAATTTCG+GGG + chr7_3:74279063-74279082 None:intergenic 55.0%
TTATCAATTTCGGGGGGGGG+GGG + chr7_3:74278114-74278133 None:intergenic 55.0%
! GAAAAGGCATGCCACGTCAG+AGG - chr7_3:74278224-74278243 Msa1123440:intron 55.0%
! AAAGGCATGCCACGTCAGAG+GGG - chr7_3:74278226-74278245 Msa1123440:intron 55.0%
TCAATTACCCCCCTCTGACG+TGG + chr7_3:74278888-74278907 None:intergenic 55.0%
TCAATTACCCCCCTCTGACG+TGG - chr7_3:74278888-74278907 Msa1123440:intron 55.0%
! AAAGGCATGCCACGTCAGAG+GGG + chr7_3:74278226-74278245 None:intergenic 55.0%
! GAAAAGGCATGCCACGTCAG+AGG + chr7_3:74278224-74278243 None:intergenic 55.0%
TGACGCGCCTTGCAATTTCG+GGG - chr7_3:74279063-74279082 Msa1123440:intron 55.0%
GAGGCCTGCTGACATTTGGT+TGG + chr7_3:74279339-74279358 None:intergenic 55.0%
AAACCAGAAACCCGCCAGTC+AGG - chr7_3:74279364-74279383 Msa1123440:CDS 55.0%
!! TTACCTGACTGGCGGGTTTC+TGG + chr7_3:74279370-74279389 None:intergenic 55.0%
!! TCAAGGGCTGGCTATGCAGA+TGG - chr7_3:74279669-74279688 Msa1123440:CDS 55.0%
GGAGTTCTTGCGTGCATTGC+AGG - chr7_3:74279814-74279833 Msa1123440:CDS 55.0%
TCCGACGATTCAACTCGCGG+CGG - chr7_3:74274230-74274249 Msa1123440:intron 60.0%
! TCCGCCGCGAGTTGAATCGT+CGG + chr7_3:74274234-74274253 None:intergenic 60.0%
!! CGGCGGGTTAAGGAAATCGG+TGG + chr7_3:74274378-74274397 None:intergenic 60.0%
!! CGGCGGCGGGTTAAGGAAAT+CGG + chr7_3:74274381-74274400 None:intergenic 60.0%
TTTCCTTAACCCGCCGCCGA+CGG - chr7_3:74274382-74274401 Msa1123440:intron 60.0%
CGAGAAGGAACCACCGACGT+CGG + chr7_3:74274434-74274453 None:intergenic 60.0%
GGGGGAATTGGAGGACGAGA+AGG + chr7_3:74274449-74274468 None:intergenic 60.0%
CACGGTGTAAGAACCGAGCC+AGG - chr7_3:74274527-74274546 Msa1123440:CDS 60.0%
TACACCAGCTGTGATGCCGG+CGG - chr7_3:74274607-74274626 Msa1123440:intron 60.0%
! TGTGATGCCGGCGGCGTTTT+CGG - chr7_3:74274616-74274635 Msa1123440:intron 60.0%
GGAAGGAGACACCGAAGTGG+CGG - chr7_3:74274667-74274686 Msa1123440:CDS 60.0%
CACCGAAGTGGCGGTGGTTT+CGG - chr7_3:74274676-74274695 Msa1123440:intron 60.0%
TGCCGAAACCACCGCCACTT+CGG + chr7_3:74274681-74274700 None:intergenic 60.0%
TGCTCCGCTACCTTCCCAAC+CGG + chr7_3:74274749-74274768 None:intergenic 60.0%
TAGCGGAGCAGGACCGAAAG+AGG - chr7_3:74274759-74274778 Msa1123440:intron 60.0%
GGAGCAGGACCGAAAGAGGA+AGG - chr7_3:74274763-74274782 Msa1123440:intron 60.0%
GAGGAAGGGAGTAGAAGCGG+AGG - chr7_3:74274778-74274797 Msa1123440:intron 60.0%
AAAAGCGGCCATACCAGCCG+TGG - chr7_3:74274963-74274982 Msa1123440:intron 60.0%
ATGTGCAGCCACGGCTGGTA+TGG + chr7_3:74274974-74274993 None:intergenic 60.0%
ATACCAGCCGTGGCTGCACA+TGG - chr7_3:74274973-74274992 Msa1123440:intron 60.0%
GTAAGGGTAGGGGTAGGGGT+AGG - chr7_3:74275441-74275460 Msa1123440:intron 60.0%
CTGCATGTGAGCCACCAAGC+TGG - chr7_3:74275631-74275650 Msa1123440:intron 60.0%
AATGTTCCACCACCGGCCGA+TGG + chr7_3:74277121-74277140 None:intergenic 60.0%
GGCTGCAGGCAAAGCAGAAC+CGG + chr7_3:74277682-74277701 None:intergenic 60.0%
! CAGCCGCGAATTTGGGACCA+AGG - chr7_3:74277697-74277716 Msa1123440:intron 60.0%
ACGCGCCTTGCAATTTCGGG+GGG + chr7_3:74279065-74279084 None:intergenic 60.0%
GACGCGCCTTGCAATTTCGG+GGG + chr7_3:74279064-74279083 None:intergenic 60.0%
TATCAATTTCGGGGGGGGGG+GGG + chr7_3:74278113-74278132 None:intergenic 60.0%
GTGGCAGTTAACTGCCCACG+TGG - chr7_3:74278185-74278204 Msa1123440:intron 60.0%
ACCATGTGGCAGTGCCACGT+GGG + chr7_3:74278924-74278943 None:intergenic 60.0%
AAGGCATGCCACGTCAGAGG+GGG - chr7_3:74278227-74278246 Msa1123440:intron 60.0%
AAGGCATGCCACGTCAGAGG+GGG + chr7_3:74278227-74278246 None:intergenic 60.0%
ACCATGTGGCAGTGCCACGT+GGG - chr7_3:74278924-74278943 Msa1123440:intron 60.0%
GTGGCAGTTAACTGCCCACG+TGG + chr7_3:74278185-74278204 None:intergenic 60.0%
GACGCGCCTTGCAATTTCGG+GGG - chr7_3:74279064-74279083 Msa1123440:intron 60.0%
ACGCGCCTTGCAATTTCGGG+GGG - chr7_3:74279065-74279084 Msa1123440:intron 60.0%
GACGATTCAACTCGCGGCGG+AGG - chr7_3:74274233-74274252 Msa1123440:intron 65.0%
TCGCGGCGGAGGAGCTTCAT+CGG - chr7_3:74274244-74274263 Msa1123440:intron 65.0%
CGGAGGAGCTTCATCGGCGA+GGG - chr7_3:74274250-74274269 Msa1123440:intron 65.0%
!! TAACCGTCGGCGGCGGGTTA+AGG + chr7_3:74274388-74274407 None:intergenic 65.0%
GTCCTCCAATTCCCCCGCCA+CGG - chr7_3:74274453-74274472 Msa1123440:intron 65.0%
! ATCCTCCGTGGCGGGGGAAT+TGG + chr7_3:74274461-74274480 None:intergenic 65.0%
ATTCCCCCGCCACGGAGGAT+AGG - chr7_3:74274461-74274480 Msa1123440:intron 65.0%
TTCCCCCGCCACGGAGGATA+GGG - chr7_3:74274462-74274481 Msa1123440:intron 65.0%
ACGTGCCCTATCCTCCGTGG+CGG + chr7_3:74274470-74274489 None:intergenic 65.0%
TGCACGTGCCCTATCCTCCG+TGG + chr7_3:74274473-74274492 None:intergenic 65.0%
ACCGTCTCCGAAAACGCCGC+CGG + chr7_3:74274626-74274645 None:intergenic 65.0%
AGGAGACACCGAAGTGGCGG+TGG - chr7_3:74274670-74274689 Msa1123440:CDS 65.0%
!! GGTTGGGAAGGTAGCGGAGC+AGG - chr7_3:74274748-74274767 Msa1123440:intron 65.0%
AAGCCATGTGCAGCCACGGC+TGG + chr7_3:74274979-74274998 None:intergenic 65.0%
GGCGAAGCCATGTGCAGCCA+CGG + chr7_3:74274983-74275002 None:intergenic 65.0%
TGCACCATGCCACCATCGGC+CGG - chr7_3:74277106-74277125 Msa1123440:CDS 65.0%
GGTCCCAAATTCGCGGCTGC+AGG + chr7_3:74277696-74277715 None:intergenic 65.0%
CGCGCCTTGCAATTTCGGGG+GGG + chr7_3:74279066-74279085 None:intergenic 65.0%
ATCAATTTCGGGGGGGGGGG+GGG + chr7_3:74278112-74278131 None:intergenic 65.0%
GACCATGTGGCAGTGCCACG+TGG + chr7_3:74278923-74278942 None:intergenic 65.0%
AGGCATGCCACGTCAGAGGG+GGG - chr7_3:74278228-74278247 Msa1123440:intron 65.0%
AGGCATGCCACGTCAGAGGG+GGG + chr7_3:74278228-74278247 None:intergenic 65.0%
GACCATGTGGCAGTGCCACG+TGG - chr7_3:74278923-74278942 Msa1123440:intron 65.0%
CGCGCCTTGCAATTTCGGGG+GGG - chr7_3:74279066-74279085 Msa1123440:intron 65.0%
GCGGAGGAGCTTCATCGGCG+AGG - chr7_3:74274249-74274268 Msa1123440:intron 70.0%
! CTCCGTGGCGGGGGAATTGG+AGG + chr7_3:74274458-74274477 None:intergenic 70.0%
CTCCAATTCCCCCGCCACGG+AGG - chr7_3:74274456-74274475 Msa1123440:intron 70.0%
TGCCCTATCCTCCGTGGCGG+GGG + chr7_3:74274467-74274486 None:intergenic 70.0%
GTGCCCTATCCTCCGTGGCG+GGG + chr7_3:74274468-74274487 None:intergenic 70.0%
CGTGCCCTATCCTCCGTGGC+GGG + chr7_3:74274469-74274488 None:intergenic 70.0%
AACGCCGCCGGCATCACAGC+TGG + chr7_3:74274614-74274633 None:intergenic 70.0%
! GCCGGCGGCGTTTTCGGAGA+CGG - chr7_3:74274622-74274641 Msa1123440:intron 70.0%
ACCATGCCACCATCGGCCGG+TGG - chr7_3:74277109-74277128 Msa1123440:CDS 70.0%
! ACCACCGGCCGATGGTGGCA+TGG + chr7_3:74277113-74277132 None:intergenic 70.0%
ATGCCACCATCGGCCGGTGG+TGG - chr7_3:74277112-74277131 Msa1123440:CDS 70.0%
GTTCCACCACCGGCCGATGG+TGG + chr7_3:74277118-74277137 None:intergenic 70.0%
TCAATTTCGGGGGGGGGGGG+GGG + chr7_3:74278111-74278130 None:intergenic 70.0%
GCCCACGTGGCACTGCCACA+TGG - chr7_3:74278198-74278217 Msa1123440:intron 70.0%
GCCCACGTGGCACTGCCACA+TGG + chr7_3:74278198-74278217 None:intergenic 70.0%
AATTTCGGGGGGGGGGGGGG+GGG + chr7_3:74278109-74278128 None:intergenic 75.0%
CAATTTCGGGGGGGGGGGGG+GGG + chr7_3:74278110-74278129 None:intergenic 75.0%
! ATTTCGGGGGGGGGGGGGGG+GGG + chr7_3:74278108-74278127 None:intergenic 80.0%
! TTTCGGGGGGGGGGGGGGGG+GGG + chr7_3:74278107-74278126 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 74273863 74280151 74273863 ID=Msa1123440;Name=Msa1123440
chr7_3 mRNA 74273863 74280151 74273863 ID=Msa1123440-mRNA-1;Parent=Msa1123440;Name=Msa1123440-mRNA-1;_AED=0.26;_eAED=0.26;_QI=142|0.77|0.8|1|1|1|10|271|540
chr7_3 exon 74273863 74274178 74273863 ID=Msa1123440-mRNA-1:exon:19753;Parent=Msa1123440-mRNA-1
chr7_3 exon 74274259 74274340 74274259 ID=Msa1123440-mRNA-1:exon:19752;Parent=Msa1123440-mRNA-1
chr7_3 exon 74274485 74274554 74274485 ID=Msa1123440-mRNA-1:exon:19751;Parent=Msa1123440-mRNA-1
chr7_3 exon 74274629 74274692 74274629 ID=Msa1123440-mRNA-1:exon:19750;Parent=Msa1123440-mRNA-1
chr7_3 exon 74276100 74276498 74276100 ID=Msa1123440-mRNA-1:exon:19749;Parent=Msa1123440-mRNA-1
chr7_3 exon 74277081 74277146 74277081 ID=Msa1123440-mRNA-1:exon:19748;Parent=Msa1123440-mRNA-1
chr7_3 exon 74277264 74277329 74277264 ID=Msa1123440-mRNA-1:exon:19747;Parent=Msa1123440-mRNA-1
chr7_3 exon 74277422 74277517 74277422 ID=Msa1123440-mRNA-1:exon:19746;Parent=Msa1123440-mRNA-1
chr7_3 exon 74279194 74279884 74279194 ID=Msa1123440-mRNA-1:exon:19745;Parent=Msa1123440-mRNA-1
chr7_3 exon 74279966 74280151 74279966 ID=Msa1123440-mRNA-1:exon:19744;Parent=Msa1123440-mRNA-1
chr7_3 five_prime_UTR 74280010 74280151 74280010 ID=Msa1123440-mRNA-1:five_prime_utr;Parent=Msa1123440-mRNA-1
chr7_3 CDS 74279966 74280009 74279966 ID=Msa1123440-mRNA-1:cds;Parent=Msa1123440-mRNA-1
chr7_3 CDS 74279194 74279884 74279194 ID=Msa1123440-mRNA-1:cds;Parent=Msa1123440-mRNA-1
chr7_3 CDS 74277422 74277517 74277422 ID=Msa1123440-mRNA-1:cds;Parent=Msa1123440-mRNA-1
chr7_3 CDS 74277264 74277329 74277264 ID=Msa1123440-mRNA-1:cds;Parent=Msa1123440-mRNA-1
chr7_3 CDS 74277081 74277146 74277081 ID=Msa1123440-mRNA-1:cds;Parent=Msa1123440-mRNA-1
chr7_3 CDS 74276100 74276498 74276100 ID=Msa1123440-mRNA-1:cds;Parent=Msa1123440-mRNA-1
chr7_3 CDS 74274629 74274692 74274629 ID=Msa1123440-mRNA-1:cds;Parent=Msa1123440-mRNA-1
chr7_3 CDS 74274485 74274554 74274485 ID=Msa1123440-mRNA-1:cds;Parent=Msa1123440-mRNA-1
chr7_3 CDS 74274259 74274340 74274259 ID=Msa1123440-mRNA-1:cds;Parent=Msa1123440-mRNA-1
chr7_3 CDS 74274134 74274178 74274134 ID=Msa1123440-mRNA-1:cds;Parent=Msa1123440-mRNA-1
chr7_3 three_prime_UTR 74273863 74274133 74273863 ID=Msa1123440-mRNA-1:three_prime_utr;Parent=Msa1123440-mRNA-1
Gene Sequence

>Msa1123440

ATGGATCAACAAGCAGGATTACCTCGTCTTAAGAAACCAATCATTGCAGATGATGAGATCATGGAGCTGTTATGGCAAAACGGCCAAGTCGTTACACAGAGGCCAAACCACCGTCATCTGAAGAAACCACTGCCGGTGAAAAACTCCGACGATTCAACTCGCGGCGGAGGAGCTTCATCGGCGAGGGAGATTCGACCAGTAGAAAACTACAATCAATATCTCTTCATGCAAGAAAATGAAATGGCTTCATGGCTTCATTACGATGATTCTCCTTTCGAACAAACCTTTTCCACCGATTTCCTTAACCCGCCGCCGACGGTTAATAACAACAGTACAATACAAACTCCGACGTCGGTGGTTCCTTCTCGTCCTCCAATTCCCCCGCCACGGAGGATAGGGCACGTGCAGCCTGAGACACCGAACTTCGCGTACTTTGCGAAGCACGGTGTAAGAACCGAGCCAGGACCGTCGTCAATTTTGAACACTGCTGCGAGGGAATCAACAGTGGTGGATTCGTGTGATACACCAGCTGTGATGCCGGCGGCGTTTTCGGAGACGGTAAGAAGTTTAGCGGATCAAACGGAAGGAGACACCGAAGTGGCGGTGGTTTCGGCAACTTTTGATGAACCGGGCGGTTCAAGTAGCAGTGAAGAAGCTGAACCGGTTGGGAAGGTAGCGGAGCAGGACCGAAAGAGGAAGGGAGTAGAAGCGGAGGAATGGGAATATCAGAGCGAGGATGTTGATTTTGAATCTGCGGAAGCCCAAAAAAATATCAGTGGATCATCTACAAAGAGATCTCGTGCTGCTGAGGTCCATAATCTCTCAGAGAGGAGGCGTCGTGATCGGATTAATGAAAAGATGAAAGCTCTGCAAGAACTTATACCTCGATCTAATAAGTCTGACAAAGCATCTATGCTGGATGAAGCAATTGATTACTTGAAGTCGCTGCAGTTACAAGTGCAGAGAGTACAACTTATGCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATCCAGCAGTATATGCCAACAGTTGGAATGGGAATGGGGATGGGGATGGGTATGGAAATGGGAATAAACAGACCAGTAATGCCATTTCCCAATATGTTATCCGGTTCTGCTTTGCCTGCAGCCGCGAATTTGGGACCAAGGTTCGCGATGCCTCCTTTCCACATGCCGCATGTTCCTACACCTGGTTCATCCAGAATGCAAGCAGCAAATCAGGTAGATAATAATGTGATCACCTCAGCTGGAACACATGATTCAAATCAGTCACGTATCCCAAATTTCAGTGATCCTTATCAACAATATCTTGGACCCCACCAGATGCAGTTTCAATTGATGCAGAATCAAGCAATGAACCAACCAAATGTCAGCAGGCCTCTTGAGAAACCAGAAACCCGCCAGTCAGCTCTTGTCCTGTGTTATGGGTTTCTGGAGCACAGTGACTTCCAGATCTGGTTGTTTACCATGTCAATGAAGGCTGGCTATGCAGATGGTGCTTCTTATTATTGTATATTCTCTTATACTACTAGCTCTCAATATGGTACTACTAGTATTATTGTTATATTTTCTGCCACTCCTAATACAGTATGCCAAGTTTTGTAG
Protein sequence

>Msa1123440

MDQQAGLPRLKKPIIADDEIMELLWQNGQVVTQRPNHRHLKKPLPVKNSDDSTRGGGASSAREIRPVENYNQYLFMQENEMASWLHYDDSPFEQTFSTDFLNPPPTVNNNSTIQTPTSVVPSRPPIPPPRRIGHVQPETPNFAYFAKHGVRTEPGPSSILNTAARESTVVDSCDTPAVMPAAFSETVRSLADQTEGDTEVAVVSATFDEPGGSSSSEEAEPVGKVAEQDRKRKGVEAEEWEYQSEDVDFESAEAQKNISGSSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRSNKSDKASMLDEAIDYLKSLQLQVQRVQLMQMMSMGCGMVPMMFPGIQQYMPTVGMGMGMGMGMEMGINRPVMPFPNMLSGSALPAAANLGPRFAMPPFHMPHVPTPGSSRMQAANQVDNNVITSAGTHDSNQSRIPNFSDPYQQYLGPHQMQFQLMQNQAMNQPNVSRPLEKPETRQSALVLCYGFLEHSDFQIWLFTMSMKAGYADGASYYCIFSYTTSSQYGTTSIIVIFSATPNTVCQVL*