Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0036290 | sp|B9RAJ0|DNPEP_RICCO | 55.533 | 488 | 195 | 5 | 55 | 523 | 6 | 490 | 0.0 | 571 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036290 | Msa0055530 | 0.813487 | 2.496695e-51 | -8.615850e-47 |
| Msa0036290 | Msa0059590 | 0.820947 | 5.239480e-53 | -8.615850e-47 |
| Msa0036290 | Msa0065390 | 0.804985 | 1.660447e-49 | -8.615850e-47 |
| Msa0036290 | Msa0072910 | 0.804091 | 2.551631e-49 | -8.615850e-47 |
| Msa0036290 | Msa0083160 | 0.800769 | 1.233609e-48 | -8.615850e-47 |
| Msa0036290 | Msa0092660 | 0.802383 | 5.757648e-49 | -8.615850e-47 |
| Msa0036290 | Msa0092730 | 0.806109 | 9.647442e-50 | -8.615850e-47 |
| Msa0036290 | Msa0107460 | 0.801872 | 7.333794e-49 | -8.615850e-47 |
| Msa0036290 | Msa0110710 | 0.803355 | 3.626637e-49 | -8.615850e-47 |
| Msa0036290 | Msa0135980 | 0.812048 | 5.158197e-51 | -8.615850e-47 |
| Msa0036290 | Msa0137600 | 0.801777 | 7.670361e-49 | -8.615850e-47 |
| Msa0036290 | Msa0149630 | 0.804527 | 2.069316e-49 | -8.615850e-47 |
| Msa0036290 | Msa0168900 | 0.801348 | 9.394334e-49 | -8.615850e-47 |
| Msa0036290 | Msa0176710 | 0.807553 | 4.777635e-50 | -8.615850e-47 |
| Msa0036290 | Msa0185550 | 0.819725 | 9.986179e-53 | -8.615850e-47 |
| Msa0036290 | Msa0218860 | 0.818599 | 1.802119e-52 | -8.615850e-47 |
| Msa0036290 | Msa0280140 | 0.802068 | 6.684127e-49 | -8.615850e-47 |
| Msa0036290 | Msa0314790 | 0.808294 | 3.324559e-50 | -8.615850e-47 |
| Msa0036290 | Msa0380420 | 0.803687 | 3.095457e-49 | -8.615850e-47 |
| Msa0036290 | Msa0417630 | 0.811953 | 5.408294e-51 | -8.615850e-47 |
| Msa0036290 | Msa0476150 | 0.816441 | 5.520493e-52 | -8.615850e-47 |
| Msa0036290 | Msa0476180 | 0.818412 | 1.986509e-52 | -8.615850e-47 |
| Msa0036290 | Msa0542040 | 0.805519 | 1.283480e-49 | -8.615850e-47 |
| Msa0036290 | Msa0555980 | 0.807957 | 3.922176e-50 | -8.615850e-47 |
| Msa0036290 | Msa0567290 | 0.826073 | 3.314105e-54 | -8.615850e-47 |
| Msa0036290 | Msa0576420 | 0.805017 | 1.635435e-49 | -8.615850e-47 |
| Msa0036290 | Msa0583930 | 0.804869 | 1.755678e-49 | -8.615850e-47 |
| Msa0036290 | Msa0604700 | 0.825832 | 3.781103e-54 | -8.615850e-47 |
| Msa0036290 | Msa0607300 | 0.803344 | 3.645550e-49 | -8.615850e-47 |
| Msa0036290 | Msa0646390 | 0.805539 | 1.271049e-49 | -8.615850e-47 |
| Msa0036290 | Msa0681890 | 0.818473 | 1.924795e-52 | -8.615850e-47 |
| Msa0036290 | Msa0685540 | 0.816957 | 4.230346e-52 | -8.615850e-47 |
| Msa0036290 | Msa0690350 | 0.818881 | 1.555063e-52 | -8.615850e-47 |
| Msa0036290 | Msa0703760 | 0.801086 | 1.063036e-48 | -8.615850e-47 |
| Msa0036290 | Msa0707780 | 0.817376 | 3.405791e-52 | -8.615850e-47 |
| Msa0036290 | Msa0709480 | 0.817591 | 3.046593e-52 | -8.615850e-47 |
| Msa0036290 | Msa0715180 | 0.807681 | 4.488168e-50 | -8.615850e-47 |
| Msa0036290 | Msa0717090 | 0.805026 | 1.628532e-49 | -8.615850e-47 |
| Msa0036290 | Msa0730180 | 0.814469 | 1.516566e-51 | -8.615850e-47 |
| Msa0036290 | Msa0764020 | 0.808105 | 3.646985e-50 | -8.615850e-47 |
| Msa0036290 | Msa0790830 | 0.819237 | 1.290348e-52 | -8.615850e-47 |
| Msa0036290 | Msa0808420 | 0.814106 | 1.824295e-51 | -8.615850e-47 |
| Msa0036290 | Msa0836200 | 0.807368 | 5.231452e-50 | -8.615850e-47 |
| Msa0036290 | Msa0890250 | 0.807263 | 5.504999e-50 | -8.615850e-47 |
| Msa0036290 | Msa0900320 | 0.804638 | 1.962624e-49 | -8.615850e-47 |
| Msa0036290 | Msa0955260 | 0.812880 | 3.393491e-51 | -8.615850e-47 |
| Msa0036290 | Msa1000470 | 0.834234 | 3.371523e-56 | -8.615850e-47 |
| Msa0036290 | Msa1028460 | 0.809781 | 1.597108e-50 | -8.615850e-47 |
| Msa0036290 | Msa1029320 | 0.800060 | 1.720102e-48 | -8.615850e-47 |
| Msa0036290 | Msa1067430 | 0.812654 | 3.802412e-51 | -8.615850e-47 |
| Msa0036290 | Msa1072080 | 0.831978 | 1.228479e-55 | -8.615850e-47 |
| Msa0036290 | Msa1084490 | 0.812587 | 3.932419e-51 | -8.615850e-47 |
| Msa0036290 | Msa1125780 | 0.803800 | 2.933076e-49 | -8.615850e-47 |
| Msa0036290 | Msa1125950 | 0.805572 | 1.251101e-49 | -8.615850e-47 |
| Msa0036290 | Msa1126140 | 0.800665 | 1.295323e-48 | -8.615850e-47 |
| Msa0036290 | Msa1159100 | 0.806696 | 7.255812e-50 | -8.615850e-47 |
| Msa0036290 | Msa1166180 | 0.803737 | 3.022725e-49 | -8.615850e-47 |
| Msa0036290 | Msa1166280 | 0.802410 | 5.685866e-49 | -8.615850e-47 |
| Msa0036290 | Msa1171340 | 0.811552 | 6.612425e-51 | -8.615850e-47 |
| Msa0036290 | Msa1178970 | 0.800525 | 1.383834e-48 | -8.615850e-47 |
| Msa0036290 | Msa1206440 | 0.805836 | 1.101257e-49 | -8.615850e-47 |
| Msa0036290 | Msa1207280 | 0.808631 | 2.816665e-50 | -8.615850e-47 |
| Msa0036290 | Msa1238710 | 0.825408 | 4.764250e-54 | -8.615850e-47 |
| Msa0036290 | Msa1243860 | 0.802215 | 6.236234e-49 | -8.615850e-47 |
| Msa0036290 | Msa1291140 | 0.824178 | 9.293539e-54 | -8.615850e-47 |
| Msa0036290 | Msa1293530 | 0.817028 | 4.078553e-52 | -8.615850e-47 |
| Msa0036290 | Msa1310340 | 0.801813 | 7.542200e-49 | -8.615850e-47 |
| Msa0036290 | Msa1368730 | 0.800750 | 1.245094e-48 | -8.615850e-47 |
| Msa0036290 | Msa1375630 | 0.804767 | 1.844537e-49 | -8.615850e-47 |
| Msa0036290 | Msa1376530 | 0.805068 | 1.595771e-49 | -8.615850e-47 |
| Msa0036290 | Msa1407710 | 0.815849 | 7.489213e-52 | -8.615850e-47 |
| Msa0036290 | Msa1410170 | 0.804170 | 2.455914e-49 | -8.615850e-47 |
| Msa0036290 | Msa1415250 | 0.810273 | 1.251439e-50 | -8.615850e-47 |
| Msa0036290 | Msa1418600 | 0.810372 | 1.191085e-50 | -8.615850e-47 |
| Msa0036290 | Msa1430270 | 0.802520 | 5.396031e-49 | -8.615850e-47 |
| Msa0036290 | Msa1435910 | 0.812392 | 4.339739e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0036290 | MtrunA17_Chr1g0198491 | 94.270 | 541 | 14 | 3 | 1 | 524 | 1 | 541 | 0.0 | 1046 |
| Msa0036290 | MtrunA17_Chr3g0116281 | 55.136 | 477 | 196 | 4 | 61 | 523 | 9 | 481 | 0.0 | 565 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0036290 | AT5G04710.1 | 78.170 | 481 | 100 | 2 | 46 | 523 | 47 | 525 | 0.0 | 805 |
| Msa0036290 | AT5G60160.1 | 58.316 | 475 | 183 | 4 | 61 | 523 | 5 | 476 | 0.0 | 584 |
Find 139 sgRNAs with CRISPR-Local
Find 465 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGCTTATCTGCAAAATT+TGG | 0.136182 | 1_1:+64749712 | None:intergenic |
| AGAAGATGAGTCTCAAAATT+TGG | 0.216625 | 1_1:+64752624 | None:intergenic |
| TGGTGCACCCACCATGTTTC+AGG | 0.245589 | 1_1:-64750513 | Msa0036290:CDS |
| TTGCCTGAGTTGGAAGGTTT+TGG | 0.257427 | 1_1:+64749578 | None:intergenic |
| CATTAAAACGATTAGAATCT+TGG | 0.283821 | 1_1:-64747944 | Msa0036290:three_prime_UTR |
| AAGAGTAGGAATACGCAAAA+TGG | 0.284264 | 1_1:+64753447 | None:intergenic |
| GGTATTATAGTTGTGTTTGC+TGG | 0.302036 | 1_1:-64748162 | Msa0036290:three_prime_UTR |
| GATAGGGATTTGAGTGTTGC+AGG | 0.304340 | 1_1:-64753532 | Msa0036290:CDS |
| CGAATGAAGTGTGATGAATT+TGG | 0.317750 | 1_1:+64754945 | None:intergenic |
| CACTCGTAATATGTCTTGTT+TGG | 0.323205 | 1_1:-64754635 | Msa0036290:CDS |
| TCGATTATCTCAACGAATCT+TGG | 0.323561 | 1_1:-64754851 | Msa0036290:CDS |
| TCTAACAGTGTCTGCAGATA+TGG | 0.338378 | 1_1:-64749749 | Msa0036290:intron |
| TATGGCATACTTGGTTTGAT+AGG | 0.339877 | 1_1:-64753549 | Msa0036290:CDS |
| AGACTTATGGAGGTGGGTTA+TGG | 0.344088 | 1_1:-64753567 | Msa0036290:CDS |
| TTGTGAATCTCCGGATGATT+TGG | 0.367388 | 1_1:-64751049 | Msa0036290:CDS |
| GAACTTTCTTCCCTAGCATT+TGG | 0.367591 | 1_1:-64748044 | Msa0036290:three_prime_UTR |
| AATTTGGTTTGAAACCTTCC+TGG | 0.386938 | 1_1:+64752640 | None:intergenic |
| ATGGTAAATGTTCAGACTTA+TGG | 0.394816 | 1_1:-64753580 | Msa0036290:CDS |
| ATAGTTGTGTTTGCTGGGGA+AGG | 0.405250 | 1_1:-64748156 | Msa0036290:three_prime_UTR |
| TAGTTGTGTTTGCTGGGGAA+GGG | 0.405777 | 1_1:-64748155 | Msa0036290:three_prime_UTR |
| TAGGTCCAATACTCGCTTCT+GGG | 0.407232 | 1_1:-64749010 | Msa0036290:CDS |
| TTTGTTCTTAATTTATTAGC+AGG | 0.410447 | 1_1:-64747916 | Msa0036290:three_prime_UTR |
| ATAGGTCCAATACTCGCTTC+TGG | 0.410477 | 1_1:-64749011 | Msa0036290:CDS |
| GTGGAACTAGAATAGGATAT+TGG | 0.413689 | 1_1:-64748126 | Msa0036290:three_prime_UTR |
| TGTTTGGTTGCTTTCGCCGT+TGG | 0.416471 | 1_1:-64754619 | Msa0036290:CDS |
| GTTAACAATGGAAACGGATT+GGG | 0.417308 | 1_1:+64754881 | None:intergenic |
| GTTGATGCCATGTTTCTGAC+TGG | 0.436244 | 1_1:+64755062 | None:intergenic |
| TTTCTTCCCTAGCATTTGGT+TGG | 0.441117 | 1_1:-64748040 | Msa0036290:three_prime_UTR |
| AGTTGTGTTTGCTGGGGAAG+GGG | 0.444921 | 1_1:-64748154 | Msa0036290:three_prime_UTR |
| TTCAAGTTATTGCGCATTGA+GGG | 0.445171 | 1_1:-64751085 | Msa0036290:CDS |
| GAGGTGGGTTATGGCATACT+TGG | 0.446649 | 1_1:-64753558 | Msa0036290:CDS |
| GAGACGTATAGTTGCGAGCT+TGG | 0.450006 | 1_1:-64750486 | Msa0036290:CDS |
| CCAATACTCGCTTCTGGGGT+TGG | 0.454012 | 1_1:-64749005 | Msa0036290:CDS |
| ACAAGTCCTTTCTGCAACTC+TGG | 0.460030 | 1_1:+64749676 | None:intergenic |
| TCAGATTCTGCTCAAGGAGC+TGG | 0.464972 | 1_1:-64750533 | Msa0036290:CDS |
| GAATGAAGTGTGATGAATTT+GGG | 0.466763 | 1_1:+64754946 | None:intergenic |
| CTACTCACTGTAGGAATTCG+TGG | 0.467627 | 1_1:-64749063 | Msa0036290:intron |
| CGTTAACAATGGAAACGGAT+TGG | 0.469284 | 1_1:+64754880 | None:intergenic |
| GGTGCTAGTGGAACTAGAAT+AGG | 0.471894 | 1_1:-64748133 | Msa0036290:three_prime_UTR |
| GGAAGAAAGTTCATTTGCTA+AGG | 0.472814 | 1_1:+64748055 | None:intergenic |
| ATGGCATACTTGGTTTGATA+GGG | 0.475833 | 1_1:-64753548 | Msa0036290:CDS |
| TGAAGGTACGATGTGGGTAA+TGG | 0.478279 | 1_1:-64753685 | Msa0036290:intron |
| ACTATACGCCAATCATTTCT+CGG | 0.479951 | 1_1:-64750428 | Msa0036290:intron |
| CTCTTGCCATTCATCTTGAC+CGG | 0.486089 | 1_1:-64753429 | Msa0036290:intron |
| GTATTATAGTTGTGTTTGCT+GGG | 0.486419 | 1_1:-64748161 | Msa0036290:three_prime_UTR |
| AGATTGCGGTAGCGAAGAAA+TGG | 0.489273 | 1_1:+64754969 | None:intergenic |
| CAGTGGATGATGAGAAGCTT+TGG | 0.489869 | 1_1:+64752533 | None:intergenic |
| TGCTGGGGAAGGGGTGCTAG+TGG | 0.491349 | 1_1:-64748145 | Msa0036290:three_prime_UTR |
| AGTAACGTCCACCTGGTTTG+AGG | 0.492439 | 1_1:+64754662 | None:intergenic |
| CAAAATTTGGATGAACTCCA+TGG | 0.496480 | 1_1:+64749725 | None:intergenic |
| TGTTGACTCTTGTGAATCTC+CGG | 0.497372 | 1_1:-64751058 | Msa0036290:CDS |
| CCAACCCCAGAAGCGAGTAT+TGG | 0.498498 | 1_1:+64749005 | None:intergenic |
| AGAGTAGGAATACGCAAAAT+GGG | 0.505031 | 1_1:+64753448 | None:intergenic |
| GCATAATCCAACCAAATGCT+AGG | 0.505418 | 1_1:+64748033 | None:intergenic |
| CTTCAAGTTATTGCGCATTG+AGG | 0.506033 | 1_1:-64751086 | Msa0036290:CDS |
| ATGGTATACCGAGAAATGAT+TGG | 0.506590 | 1_1:+64750420 | None:intergenic |
| GATACTCAACCTAGCTGCCT+TGG | 0.507943 | 1_1:-64751156 | Msa0036290:CDS |
| TTGCTCAACTTTCAATGCAC+AGG | 0.508431 | 1_1:-64748959 | Msa0036290:intron |
| TTCTTAATGAAAATGAAGAA+TGG | 0.509917 | 1_1:-64754687 | Msa0036290:CDS |
| TGGCTAGCGAACAAGCGATT+CGG | 0.514344 | 1_1:-64751029 | Msa0036290:CDS |
| GCAGTATAAGAGAAATATGT+GGG | 0.516675 | 1_1:-64748298 | Msa0036290:intron |
| TAGAGAGGAATTGCCTGAGT+TGG | 0.517382 | 1_1:+64749568 | None:intergenic |
| TGGACTCATTTCCACGCCAC+AGG | 0.517508 | 1_1:-64754831 | Msa0036290:intron |
| AATGTATTAACAAATGCTCT+CGG | 0.518734 | 1_1:+64747963 | None:intergenic |
| TGAGTGATGGAGATGAAGAA+TGG | 0.519262 | 1_1:+64755015 | None:intergenic |
| TTCTGGGGTTGGCATCCGAA+CGG | 0.519284 | 1_1:-64748994 | Msa0036290:CDS |
| ACTCAACCTAGCTGCCTTGG+AGG | 0.522687 | 1_1:-64751153 | Msa0036290:CDS |
| AGAAGCGAGTATTGGACCTA+TGG | 0.522950 | 1_1:+64749013 | None:intergenic |
| AAACGACAATTAATCGCAGC+TGG | 0.525194 | 1_1:-64754718 | Msa0036290:CDS |
| TCATCATCCACTGCTTATGC+AGG | 0.526925 | 1_1:-64752523 | Msa0036290:intron |
| TTGATGCCATGTTTCTGACT+GGG | 0.529382 | 1_1:+64755063 | None:intergenic |
| CAATTCCACAGTCAACCGTT+CGG | 0.533344 | 1_1:+64748979 | None:intergenic |
| AATCCAAAACCTTCCAACTC+AGG | 0.535938 | 1_1:-64749581 | Msa0036290:intron |
| TTCCACTGGTAGCATAGCGC+TGG | 0.536045 | 1_1:+64749635 | None:intergenic |
| AGTGAAGGCTTCTTATATGA+TGG | 0.536472 | 1_1:-64753599 | Msa0036290:CDS |
| ATAGTACCGGTCAAGATGAA+TGG | 0.542404 | 1_1:+64753423 | None:intergenic |
| TAGCGAAGAAATGGTGATGA+TGG | 0.542884 | 1_1:+64754978 | None:intergenic |
| TTGAGGTTGAGTTTGAGTGA+TGG | 0.543547 | 1_1:+64755002 | None:intergenic |
| TTTGCACCTCCAAGGCAGCT+AGG | 0.544081 | 1_1:+64751147 | None:intergenic |
| AAGATCGTTAACAATGGAAA+CGG | 0.548215 | 1_1:+64754875 | None:intergenic |
| GTCCTTTCTGCAACTCTGGT+CGG | 0.548950 | 1_1:+64749680 | None:intergenic |
| TGCAGTATAAGAGAAATATG+TGG | 0.550194 | 1_1:-64748299 | Msa0036290:intron |
| GTGGGTTCAGATTCTGCTCA+AGG | 0.551999 | 1_1:-64750539 | Msa0036290:CDS |
| GTTAGAAATGACATGGGATG+CGG | 0.553592 | 1_1:-64749041 | Msa0036290:CDS |
| GCAAATAACTATGTTGGTGA+AGG | 0.554402 | 1_1:-64750464 | Msa0036290:CDS |
| AATGTTCAGACTTATGGAGG+TGG | 0.554687 | 1_1:-64753574 | Msa0036290:CDS |
| ATTGTTTAGCACAGTGAACC+AGG | 0.556386 | 1_1:-64752658 | Msa0036290:intron |
| TCGAGTTTCATCGAGAGTAA+AGG | 0.562438 | 1_1:+64752600 | None:intergenic |
| TGCCATGTTTCTGACTGGGT+GGG | 0.565166 | 1_1:+64755067 | None:intergenic |
| TATAAGAGAAATATGTGGGA+AGG | 0.567515 | 1_1:-64748294 | Msa0036290:CDS |
| GCTCGCAACTATACGTCTCA+TGG | 0.570595 | 1_1:+64750490 | None:intergenic |
| GAGGAATTGCCTGAGTTGGA+AGG | 0.571426 | 1_1:+64749572 | None:intergenic |
| GCCGAAAACAGCGTCAGTGA+AGG | 0.571596 | 1_1:-64753614 | Msa0036290:CDS |
| ATGCCATGTTTCTGACTGGG+TGG | 0.571839 | 1_1:+64755066 | None:intergenic |
| TGTTCGCTAGCCAAATCATC+CGG | 0.572626 | 1_1:+64751039 | None:intergenic |
| AAGAAGAGATGTGATTCCAC+TGG | 0.575695 | 1_1:+64749621 | None:intergenic |
| ATGGGATGCGGATCAACCAT+AGG | 0.581725 | 1_1:-64749029 | Msa0036290:CDS |
| ATTCATTGTTTGCACCTCCA+AGG | 0.583178 | 1_1:+64751139 | None:intergenic |
| GGTTGCTCTGTTTGACAATG+AGG | 0.587175 | 1_1:-64751004 | Msa0036290:CDS |
| CACCGACCAGAGTTGCAGAA+AGG | 0.588992 | 1_1:-64749682 | Msa0036290:CDS |
| ACGTCTCATGGCCTGAAACA+TGG | 0.589765 | 1_1:+64750502 | None:intergenic |
| TTCGGCTTCAGTTTCAGACA+TGG | 0.589778 | 1_1:+64753631 | None:intergenic |
| TGTTGTTGAAGGTACGATGT+GGG | 0.589808 | 1_1:-64753691 | Msa0036290:intron |
| GAAATGGTGATGATGGTTTG+AGG | 0.591381 | 1_1:+64754985 | None:intergenic |
| GTGAAGAAGTAACGTCCACC+TGG | 0.592016 | 1_1:+64754655 | None:intergenic |
| ATGTTCAGACTTATGGAGGT+GGG | 0.592042 | 1_1:-64753573 | Msa0036290:CDS |
| ATTCGTGGTTAGAAATGACA+TGG | 0.593807 | 1_1:-64749048 | Msa0036290:CDS |
| GTGTCTGCAGATATGGCCCA+TGG | 0.599082 | 1_1:-64749742 | Msa0036290:CDS |
| CATAATCCAACCAAATGCTA+GGG | 0.600259 | 1_1:+64748034 | None:intergenic |
| TCAAGATGAATGGCAAGAGT+AGG | 0.611001 | 1_1:+64753433 | None:intergenic |
| TTTAGCACAGTGAACCAGGA+AGG | 0.619667 | 1_1:-64752654 | Msa0036290:intron |
| ATCGAGAAGATCGTTAACAA+TGG | 0.623163 | 1_1:+64754869 | None:intergenic |
| AAAATTTGGATGAACTCCAT+GGG | 0.626689 | 1_1:+64749726 | None:intergenic |
| AGCTTGGCAAATAACTATGT+TGG | 0.628527 | 1_1:-64750470 | Msa0036290:CDS |
| CTTTCTGCAACTCTGGTCGG+TGG | 0.630101 | 1_1:+64749683 | None:intergenic |
| ATGCGTACCTGCATAAGCAG+TGG | 0.634880 | 1_1:+64752516 | None:intergenic |
| TTGTTGTTGAAGGTACGATG+TGG | 0.636225 | 1_1:-64753692 | Msa0036290:intron |
| GTGATGAATTTGGGAGATTG+CGG | 0.637552 | 1_1:+64754955 | None:intergenic |
| AGGTCCAATACTCGCTTCTG+GGG | 0.638373 | 1_1:-64749009 | Msa0036290:CDS |
| AACCAGCGCTATGCTACCAG+TGG | 0.640942 | 1_1:-64749637 | Msa0036290:CDS |
| GTAAATGTTCAGACTTATGG+AGG | 0.649065 | 1_1:-64753577 | Msa0036290:CDS |
| AACCCACCCAGTCAGAAACA+TGG | 0.652324 | 1_1:-64755069 | Msa0036290:exon |
| CATAGACAAGATGCTGACTG+TGG | 0.652971 | 1_1:-64748216 | Msa0036290:CDS |
| TAGCGAACAAGCGATTCGGA+TGG | 0.653246 | 1_1:-64751025 | Msa0036290:CDS |
| GGCATCCGAACGGTTGACTG+TGG | 0.654138 | 1_1:-64748984 | Msa0036290:CDS |
| TGCTCTGTTTGACAATGAGG+AGG | 0.654956 | 1_1:-64751001 | Msa0036290:intron |
| GAAGAATGGAACCTCAAACC+AGG | 0.655104 | 1_1:-64754673 | Msa0036290:CDS |
| CTCATGGCCTGAAACATGGT+GGG | 0.659072 | 1_1:+64750506 | None:intergenic |
| TGTGTTGCTGAACATGTGCA+TGG | 0.663234 | 1_1:-64748183 | Msa0036290:three_prime_UTR |
| GAAGAATGGAGAAGAATGTG+CGG | 0.674419 | 1_1:+64755029 | None:intergenic |
| TGCTCTCGGAGCAAATAGAG+AGG | 0.675399 | 1_1:+64747977 | None:intergenic |
| GAATGAAGGTACCTGTGGCG+TGG | 0.675955 | 1_1:+64754820 | None:intergenic |
| TTTACTCTCGATGAAACTCG+AGG | 0.679371 | 1_1:-64752598 | Msa0036290:CDS |
| TTCGTGGTTAGAAATGACAT+GGG | 0.700502 | 1_1:-64749047 | Msa0036290:CDS |
| GAATGGAACCTCAAACCAGG+TGG | 0.708230 | 1_1:-64754670 | Msa0036290:CDS |
| TATTATAGTTGTGTTTGCTG+GGG | 0.708665 | 1_1:-64748160 | Msa0036290:three_prime_UTR |
| TCTCATGGCCTGAAACATGG+TGG | 0.711165 | 1_1:+64750505 | None:intergenic |
| TGTCAACTACTATTGCATCA+CGG | 0.718438 | 1_1:+64755104 | None:intergenic |
| CAACTACTATTGCATCACGG+TGG | 0.752235 | 1_1:+64755107 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATAAAAAATAAAAT+TGG | + | chr1_1:64752970-64752989 | None:intergenic | 0.0% |
| !! | TAATTTAACTATAAATAATC+AGG | + | chr1_1:64748593-64748612 | None:intergenic | 10.0% |
| !! | TAAGATATTTGTAAAAAAAA+AGG | + | chr1_1:64749816-64749835 | None:intergenic | 10.0% |
| !!! | TTTTAAAAAAATTATTGGTA+AGG | + | chr1_1:64750642-64750661 | None:intergenic | 10.0% |
| !!! | ATTATTTTGGAAATTTTAAA+AGG | - | chr1_1:64751144-64751163 | Msa0036290:CDS | 10.0% |
| !! | ATGCTATATATAAAAAAAAT+AGG | + | chr1_1:64753883-64753902 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTTTTTTGTATC+CGG | - | chr1_1:64754235-64754254 | Msa0036290:intron | 10.0% |
| !! | TAGCAATTTCAATTTATATT+TGG | + | chr1_1:64750795-64750814 | None:intergenic | 15.0% |
| !! | ATTCGATTATTAAATTGTAA+TGG | + | chr1_1:64751251-64751270 | None:intergenic | 15.0% |
| !! | AATTTAATAATCGAATGAAT+TGG | - | chr1_1:64751255-64751274 | Msa0036290:intron | 15.0% |
| !! | TAAATATTCATTCATAGAAA+GGG | - | chr1_1:64751332-64751351 | Msa0036290:intron | 15.0% |
| !!! | AATTTTTGTATAGCAATTAA+AGG | - | chr1_1:64751421-64751440 | Msa0036290:intron | 15.0% |
| !! | AATATCCAAAATAATAAACA+CGG | + | chr1_1:64751572-64751591 | None:intergenic | 15.0% |
| !!! | AACAATGAATTTATTTTTTC+TGG | - | chr1_1:64751874-64751893 | Msa0036290:intron | 15.0% |
| !! | ATAAATAGGATATATCATAA+AGG | + | chr1_1:64752354-64752373 | None:intergenic | 15.0% |
| !! | ATTTGTCATAAATTTATAAG+AGG | + | chr1_1:64752606-64752625 | None:intergenic | 15.0% |
| !!! | TAAAAAAAATAGGAGATTTT+GGG | + | chr1_1:64753873-64753892 | None:intergenic | 15.0% |
| !!! | ATAAAAAAAATAGGAGATTT+TGG | + | chr1_1:64753874-64753893 | None:intergenic | 15.0% |
| !! | TATATAGCATAGATTTATTA+AGG | - | chr1_1:64753893-64753912 | Msa0036290:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTGTATCC+GGG | - | chr1_1:64754236-64754255 | Msa0036290:intron | 15.0% |
| !!! | ATTCTTCATTTTCATTAAGA+AGG | + | chr1_1:64748314-64748333 | None:intergenic | 20.0% |
| !! | TTCTTAATGAAAATGAAGAA+TGG | - | chr1_1:64748313-64748332 | Msa0036290:intron | 20.0% |
| !! | TCAAAATTATATCACTTACT+AGG | - | chr1_1:64748616-64748635 | Msa0036290:intron | 20.0% |
| !!! | CTAATTTGCTTATGAAATTT+TGG | - | chr1_1:64748938-64748957 | Msa0036290:intron | 20.0% |
| !! | TAATGTTAGAAATTAATGGA+AGG | - | chr1_1:64749128-64749147 | Msa0036290:intron | 20.0% |
| !! | TTATTATTATTATCTGCTGA+TGG | - | chr1_1:64749259-64749278 | Msa0036290:intron | 20.0% |
| !!! | TTGTTTTCATAAGCTTTTTT+TGG | + | chr1_1:64749788-64749807 | None:intergenic | 20.0% |
| !! | ATTCATCAAACTAAACATTA+TGG | - | chr1_1:64749926-64749945 | Msa0036290:intron | 20.0% |
| !! | AGTTAATTATAAGCAAATAC+CGG | - | chr1_1:64750171-64750190 | Msa0036290:intron | 20.0% |
| !!! | CATGTAGAACATTATTATTT+TGG | - | chr1_1:64751131-64751150 | Msa0036290:CDS | 20.0% |
| !! | AGGAATACAAAATATGTATA+AGG | + | chr1_1:64751224-64751243 | None:intergenic | 20.0% |
| !! | GTAAATATTCATTCATAGAA+AGG | - | chr1_1:64751331-64751350 | Msa0036290:intron | 20.0% |
| !!! | TAGATAAATAATGGAAAAAG+AGG | - | chr1_1:64751459-64751478 | Msa0036290:intron | 20.0% |
| !!! | GTGTTTATTATTTTGGATAT+TGG | - | chr1_1:64751571-64751590 | Msa0036290:intron | 20.0% |
| !! | TATCTGAAAATTAAACACAA+GGG | + | chr1_1:64751764-64751783 | None:intergenic | 20.0% |
| !! | ATATCTGAAAATTAAACACA+AGG | + | chr1_1:64751765-64751784 | None:intergenic | 20.0% |
| !!! | CTATGATTTTTTTCTTTTAG+GGG | + | chr1_1:64752280-64752299 | None:intergenic | 20.0% |
| !!! | GCTATGATTTTTTTCTTTTA+GGG | + | chr1_1:64752281-64752300 | None:intergenic | 20.0% |
| !!! | TGCTATGATTTTTTTCTTTT+AGG | + | chr1_1:64752282-64752301 | None:intergenic | 20.0% |
| !! | AAAAAAATCATAGCAATCAT+CGG | - | chr1_1:64752287-64752306 | Msa0036290:intron | 20.0% |
| !!! | AAATTATGGATTAGTTAAAG+AGG | - | chr1_1:64752744-64752763 | Msa0036290:intron | 20.0% |
| !!! | AATTATGGATTAGTTAAAGA+GGG | - | chr1_1:64752745-64752764 | Msa0036290:intron | 20.0% |
| !! | TCAGTACTTAAATCTTATTA+AGG | - | chr1_1:64752840-64752859 | Msa0036290:intron | 20.0% |
| !! | CAGTACTTAAATCTTATTAA+GGG | - | chr1_1:64752841-64752860 | Msa0036290:intron | 20.0% |
| !! | AGTACTTAAATCTTATTAAG+GGG | - | chr1_1:64752842-64752861 | Msa0036290:intron | 20.0% |
| !!! | TTATACATGAATTTGTTTCA+GGG | - | chr1_1:64753011-64753030 | Msa0036290:intron | 20.0% |
| !! | GAATACAAAAGTTAATTTAG+TGG | + | chr1_1:64753227-64753246 | None:intergenic | 20.0% |
| !! | ATACTAGCAAAAATTATGAA+TGG | - | chr1_1:64753629-64753648 | Msa0036290:CDS | 20.0% |
| !! | TATTATATTTGCCATATTGT+TGG | + | chr1_1:64753759-64753778 | None:intergenic | 20.0% |
| !!! | TTACTAAAGGAAAATTTGTT+CGG | - | chr1_1:64753818-64753837 | Msa0036290:intron | 20.0% |
| !!! | TAAAGGTTTTGATAAGTTAT+TGG | + | chr1_1:64754105-64754124 | None:intergenic | 20.0% |
| !! | TTTGTTCTTAATTTATTAGC+AGG | - | chr1_1:64755084-64755103 | Msa0036290:five_prime_UTR | 20.0% |
| ! | AATATGGAGAATAATAGCAA+TGG | + | chr1_1:64748205-64748224 | None:intergenic | 25.0% |
| ! | AGTTAAGTGATATAACTCAT+TGG | + | chr1_1:64748672-64748691 | None:intergenic | 25.0% |
| !!! | TTTTAACTTTACCGAATATG+TGG | - | chr1_1:64748874-64748893 | Msa0036290:intron | 25.0% |
| !!! | TTTGCTTATGAAATTTTGGT+TGG | - | chr1_1:64748942-64748961 | Msa0036290:intron | 25.0% |
| !!! | TTGCTTATGAAATTTTGGTT+GGG | - | chr1_1:64748943-64748962 | Msa0036290:intron | 25.0% |
| ! | GTTGCAATTATAATTGTACA+TGG | + | chr1_1:64748990-64749009 | None:intergenic | 25.0% |
| ! | ACATCAATGTTAGTTCATTA+AGG | + | chr1_1:64749054-64749073 | None:intergenic | 25.0% |
| ! | TTAATGAACTAACATTGATG+TGG | - | chr1_1:64749053-64749072 | Msa0036290:CDS | 25.0% |
| ! | CCATTAATTTCTAACATTAG+AGG | + | chr1_1:64749127-64749146 | None:intergenic | 25.0% |
| ! | CCTCTAATGTTAGAAATTAA+TGG | - | chr1_1:64749124-64749143 | Msa0036290:intron | 25.0% |
| ! | TTGTAATATACCGTTCAAAA+TGG | + | chr1_1:64749155-64749174 | None:intergenic | 25.0% |
| !! | TGAACGGTATATTACAATTT+TGG | - | chr1_1:64749158-64749177 | Msa0036290:intron | 25.0% |
| !! | GAACGGTATATTACAATTTT+GGG | - | chr1_1:64749159-64749178 | Msa0036290:intron | 25.0% |
| !! | AACGGTATATTACAATTTTG+GGG | - | chr1_1:64749160-64749179 | Msa0036290:intron | 25.0% |
| ! | TCTATTAAAATAAGCACTTG+TGG | - | chr1_1:64749692-64749711 | Msa0036290:CDS | 25.0% |
| ! | ACAATGAAACAAATATGAGA+CGG | + | chr1_1:64750327-64750346 | None:intergenic | 25.0% |
| !! | AAAATCACAGAATTTTCCAT+GGG | + | chr1_1:64751178-64751197 | None:intergenic | 25.0% |
| !!! | TATTAAATTGTAATGGACTG+AGG | + | chr1_1:64751244-64751263 | None:intergenic | 25.0% |
| ! | AGTCAAATAAGTTTATCTCT+TGG | - | chr1_1:64751606-64751625 | Msa0036290:intron | 25.0% |
| ! | TAGCAATTGATATTGTACAA+TGG | - | chr1_1:64751634-64751653 | Msa0036290:intron | 25.0% |
| ! | AGCAATTGATATTGTACAAT+GGG | - | chr1_1:64751635-64751654 | Msa0036290:intron | 25.0% |
| !! | TAATTTTCAGATATTGTCAG+AGG | - | chr1_1:64751771-64751790 | Msa0036290:intron | 25.0% |
| ! | GATATATCCTATTTATGAGT+TGG | - | chr1_1:64752358-64752377 | Msa0036290:intron | 25.0% |
| ! | CATTATACCAACTCATAAAT+AGG | + | chr1_1:64752368-64752387 | None:intergenic | 25.0% |
| ! | GTCATAAATTTATAAGAGGA+TGG | + | chr1_1:64752602-64752621 | None:intergenic | 25.0% |
| !!! | AGATTTAAGTACTGAACAAA+TGG | + | chr1_1:64752835-64752854 | None:intergenic | 25.0% |
| ! | TTCTGTTTACTAGATCTATT+GGG | - | chr1_1:64752917-64752936 | Msa0036290:intron | 25.0% |
| !! | GGGATGTCAATTTAAATTTT+TGG | - | chr1_1:64752937-64752956 | Msa0036290:intron | 25.0% |
| !! | CTTATACATGAATTTGTTTC+AGG | - | chr1_1:64753010-64753029 | Msa0036290:intron | 25.0% |
| !! | AGAGTTTGTCATTTAATTAG+AGG | - | chr1_1:64753073-64753092 | Msa0036290:intron | 25.0% |
| !!! | TCTCTTCTTTTTAAAGAAGT+TGG | - | chr1_1:64753393-64753412 | Msa0036290:intron | 25.0% |
| !!! | CTCTTCTTTTTAAAGAAGTT+GGG | - | chr1_1:64753394-64753413 | Msa0036290:intron | 25.0% |
| ! | CAAAATGAGAAATAATAGAG+AGG | + | chr1_1:64753450-64753469 | None:intergenic | 25.0% |
| !! | TCTATTGCTAGAGATTATTT+TGG | + | chr1_1:64753569-64753588 | None:intergenic | 25.0% |
| !!! | AAGGATAAACATGATTTGTT+GGG | + | chr1_1:64753726-64753745 | None:intergenic | 25.0% |
| !! | AAAGGATAAACATGATTTGT+TGG | + | chr1_1:64753727-64753746 | None:intergenic | 25.0% |
| !!! | CTTTAGTAACGTTTTTTTGA+TGG | + | chr1_1:64753807-64753826 | None:intergenic | 25.0% |
| ! | CATCAAAAAAACGTTACTAA+AGG | - | chr1_1:64753805-64753824 | Msa0036290:intron | 25.0% |
| !! | GGTTACAATTTATACCTTTT+CGG | + | chr1_1:64754158-64754177 | None:intergenic | 25.0% |
| ! | AACCTCATAAATATTGAAAC+TGG | + | chr1_1:64754270-64754289 | None:intergenic | 25.0% |
| ! | TAAGACACAGAAGAAATTAA+GGG | + | chr1_1:64754542-64754561 | None:intergenic | 25.0% |
| ! | ATAAGACACAGAAGAAATTA+AGG | + | chr1_1:64754543-64754562 | None:intergenic | 25.0% |
| !! | AGAAAAAACCATTCTGAAAA+AGG | - | chr1_1:64754594-64754613 | Msa0036290:intron | 25.0% |
| ! | GACAATCTATATAATATCCT+TGG | + | chr1_1:64754661-64754680 | None:intergenic | 25.0% |
| ! | AATGTATTAACAAATGCTCT+CGG | + | chr1_1:64755040-64755059 | None:intergenic | 25.0% |
| ! | CATTAAAACGATTAGAATCT+TGG | - | chr1_1:64755056-64755075 | Msa0036290:exon | 25.0% |
| GAATGAAGTGTGATGAATTT+GGG | + | chr1_1:64748057-64748076 | None:intergenic | 30.0% | |
| AAGATCGTTAACAATGGAAA+CGG | + | chr1_1:64748128-64748147 | None:intergenic | 30.0% | |
| GAATAATAGCAATGGAATGA+AGG | + | chr1_1:64748197-64748216 | None:intergenic | 30.0% | |
| ACAGTAAGCGATATAATTCA+AGG | + | chr1_1:64748705-64748724 | None:intergenic | 30.0% | |
| CATTTACACCCTTGTAATTT+GGG | + | chr1_1:64748805-64748824 | None:intergenic | 30.0% | |
| ACATCAATGCTACCATATTT+GGG | - | chr1_1:64748914-64748933 | Msa0036290:intron | 30.0% | |
| AAGCAAATTAGTCCCAAATA+TGG | + | chr1_1:64748929-64748948 | None:intergenic | 30.0% | |
| ! | ATTGTACATGGACTAATTAC+TGG | + | chr1_1:64748978-64748997 | None:intergenic | 30.0% |
| ! | CTGATTTGCCTTAGAAATTT+AGG | + | chr1_1:64749030-64749049 | None:intergenic | 30.0% |
| ATGGTAAATGTTCAGACTTA+TGG | - | chr1_1:64749420-64749439 | Msa0036290:intron | 30.0% | |
| ATGAATGTGAGTTATAGTAC+CGG | + | chr1_1:64749593-64749612 | None:intergenic | 30.0% | |
| TTCAATTACAACTCCTACTT+AGG | - | chr1_1:64749641-64749660 | Msa0036290:CDS | 30.0% | |
| CTAACAATAAAAACAGGCAA+TGG | + | chr1_1:64749761-64749780 | None:intergenic | 30.0% | |
| !! | GATGATAGTTAGTTAGTCTT+AGG | + | chr1_1:64749893-64749912 | None:intergenic | 30.0% |
| ACATGCATTACAAATCATAG+GGG | + | chr1_1:64750028-64750047 | None:intergenic | 30.0% | |
| CACATGCATTACAAATCATA+GGG | + | chr1_1:64750029-64750048 | None:intergenic | 30.0% | |
| ACACATGCATTACAAATCAT+AGG | + | chr1_1:64750030-64750049 | None:intergenic | 30.0% | |
| GATGAATAAATCAGTGGTTA+AGG | + | chr1_1:64750068-64750087 | None:intergenic | 30.0% | |
| !! | ACCACTGATTTATTCATCAA+TGG | - | chr1_1:64750070-64750089 | Msa0036290:intron | 30.0% |
| ACCATTGATGAATAAATCAG+TGG | + | chr1_1:64750074-64750093 | None:intergenic | 30.0% | |
| GTTAAAATCACTTACTTCAG+AGG | - | chr1_1:64750092-64750111 | Msa0036290:intron | 30.0% | |
| ! | AGGATAGAACAAATGTTTTC+CGG | + | chr1_1:64750193-64750212 | None:intergenic | 30.0% |
| AAACATTTGTTCTATCCTTG+AGG | - | chr1_1:64750195-64750214 | Msa0036290:intron | 30.0% | |
| AACATTTGTTCTATCCTTGA+GGG | - | chr1_1:64750196-64750215 | Msa0036290:intron | 30.0% | |
| AGAAGATGAGTCTCAAAATT+TGG | + | chr1_1:64750379-64750398 | None:intergenic | 30.0% | |
| TTCAAACTCAAGTCAAAAGA+AGG | + | chr1_1:64750517-64750536 | None:intergenic | 30.0% | |
| AATTATTGGTAAGGTATGCA+TGG | + | chr1_1:64750633-64750652 | None:intergenic | 30.0% | |
| AAGAAATCGATAGTTGTAGA+TGG | + | chr1_1:64750693-64750712 | None:intergenic | 30.0% | |
| TTCTATCTTCTACTGAATCT+AGG | + | chr1_1:64750747-64750766 | None:intergenic | 30.0% | |
| ! | GCTATATACTCTAGTTTCTT+AGG | - | chr1_1:64750811-64750830 | Msa0036290:intron | 30.0% |
| ! | GAAAATCACAGAATTTTCCA+TGG | + | chr1_1:64751179-64751198 | None:intergenic | 30.0% |
| ! | GATTTTCTTAACCAATGTCT+TGG | - | chr1_1:64751192-64751211 | Msa0036290:CDS | 30.0% |
| TAAGGAAAATACCAAGACAT+TGG | + | chr1_1:64751206-64751225 | None:intergenic | 30.0% | |
| ATATTCGCATGCATTTCAAT+AGG | + | chr1_1:64751296-64751315 | None:intergenic | 30.0% | |
| GCAGAGTAGTAGATAAATAA+TGG | - | chr1_1:64751450-64751469 | Msa0036290:intron | 30.0% | |
| TGAATTCAAGTGTCATCATT+GGG | + | chr1_1:64751546-64751565 | None:intergenic | 30.0% | |
| ATGAATTCAAGTGTCATCAT+TGG | + | chr1_1:64751547-64751566 | None:intergenic | 30.0% | |
| ! | CATAGCCGTGTTTATTATTT+TGG | - | chr1_1:64751564-64751583 | Msa0036290:intron | 30.0% |
| TTTCCATCAGTTTGAAAGAA+CGG | + | chr1_1:64752227-64752246 | None:intergenic | 30.0% | |
| TGCGTGTAATTCCAATATTA+AGG | - | chr1_1:64752650-64752669 | Msa0036290:CDS | 30.0% | |
| GCGTGTAATTCCAATATTAA+GGG | - | chr1_1:64752651-64752670 | Msa0036290:CDS | 30.0% | |
| TTGCAATCAACCCTTAATAT+TGG | + | chr1_1:64752664-64752683 | None:intergenic | 30.0% | |
| TAGCTATGCTCTATAATAGA+AGG | + | chr1_1:64752701-64752720 | None:intergenic | 30.0% | |
| TCCTAAGAAAGCTCAAATTA+TGG | - | chr1_1:64752730-64752749 | Msa0036290:intron | 30.0% | |
| TCCATAATTTGAGCTTTCTT+AGG | + | chr1_1:64752734-64752753 | None:intergenic | 30.0% | |
| ATGGCTGAAATTGATAAAAG+AGG | - | chr1_1:64752784-64752803 | Msa0036290:intron | 30.0% | |
| CTTCTGTTTACTAGATCTAT+TGG | - | chr1_1:64752916-64752935 | Msa0036290:intron | 30.0% | |
| ATATTGCAGGACGAAATTAT+CGG | + | chr1_1:64753051-64753070 | None:intergenic | 30.0% | |
| ! | TGATAAAAGAGCACATTCAA+TGG | - | chr1_1:64753117-64753136 | Msa0036290:intron | 30.0% |
| AAAATTTGGATGAACTCCAT+GGG | + | chr1_1:64753277-64753296 | None:intergenic | 30.0% | |
| TCATGCTTATCTGCAAAATT+TGG | + | chr1_1:64753291-64753310 | None:intergenic | 30.0% | |
| !! | TATTGTTGGTGACATTGAAA+AGG | + | chr1_1:64753745-64753764 | None:intergenic | 30.0% |
| TTTCAATGTCACCAACAATA+TGG | - | chr1_1:64753745-64753764 | Msa0036290:intron | 30.0% | |
| !! | AAAAATAGGAGATTTTGGGT+TGG | + | chr1_1:64753869-64753888 | None:intergenic | 30.0% |
| ! | ATATTTTGTCTACTCACTGT+AGG | - | chr1_1:64753928-64753947 | Msa0036290:intron | 30.0% |
| CATATGACAAGGTTTCATAA+AGG | + | chr1_1:64754122-64754141 | None:intergenic | 30.0% | |
| GTATAAATTGTAACCATGTC+TGG | - | chr1_1:64754163-64754182 | Msa0036290:intron | 30.0% | |
| GTCCAGTTTCAATATTTATG+AGG | - | chr1_1:64754265-64754284 | Msa0036290:intron | 30.0% | |
| !! | TGAGGTTTGACTTAATCTTT+TGG | - | chr1_1:64754283-64754302 | Msa0036290:intron | 30.0% |
| !!! | TGACTTAATCTTTTGGAATC+AGG | - | chr1_1:64754290-64754309 | Msa0036290:intron | 30.0% |
| !!! | AATCTTTTGGAATCAGGTAT+TGG | - | chr1_1:64754296-64754315 | Msa0036290:intron | 30.0% |
| GTAAGGCAACAAATATTGAA+TGG | + | chr1_1:64754398-64754417 | None:intergenic | 30.0% | |
| ! | AATATTTGTTGCCTTACTCT+TGG | - | chr1_1:64754401-64754420 | Msa0036290:intron | 30.0% |
| CATATATAATATTAGCCGAG+CGG | + | chr1_1:64754515-64754534 | None:intergenic | 30.0% | |
| AAGACACAGAAGAAATTAAG+GGG | + | chr1_1:64754541-64754560 | None:intergenic | 30.0% | |
| !!! | CAACAATTCCTTTTTCAGAA+TGG | + | chr1_1:64754605-64754624 | None:intergenic | 30.0% |
| ! | CTATATAATATCCTTGGTGT+AGG | + | chr1_1:64754655-64754674 | None:intergenic | 30.0% |
| TGCAGTATAAGAGAAATATG+TGG | - | chr1_1:64754701-64754720 | Msa0036290:CDS | 30.0% | |
| GCAGTATAAGAGAAATATGT+GGG | - | chr1_1:64754702-64754721 | Msa0036290:CDS | 30.0% | |
| TATAAGAGAAATATGTGGGA+AGG | - | chr1_1:64754706-64754725 | Msa0036290:CDS | 30.0% | |
| GTATTATAGTTGTGTTTGCT+GGG | - | chr1_1:64754839-64754858 | Msa0036290:CDS | 30.0% | |
| ! | TATTATAGTTGTGTTTGCTG+GGG | - | chr1_1:64754840-64754859 | Msa0036290:CDS | 30.0% |
| !! | TTTTAGGAGAACTTTGTTCT+CGG | + | chr1_1:64754925-64754944 | None:intergenic | 30.0% |
| !! | AGTTCATTTGCTAAGGTTTT+AGG | + | chr1_1:64754941-64754960 | None:intergenic | 30.0% |
| TGTCAACTACTATTGCATCA+CGG | + | chr1_1:64747899-64747918 | None:intergenic | 35.0% | |
| CGAATGAAGTGTGATGAATT+TGG | + | chr1_1:64748058-64748077 | None:intergenic | 35.0% | |
| !! | GGATTTTGAAGATGTGGAAT+TGG | + | chr1_1:64748101-64748120 | None:intergenic | 35.0% |
| ! | GTTAACAATGGAAACGGATT+GGG | + | chr1_1:64748122-64748141 | None:intergenic | 35.0% |
| ATCGAGAAGATCGTTAACAA+TGG | + | chr1_1:64748134-64748153 | None:intergenic | 35.0% | |
| TCGATTATCTCAACGAATCT+TGG | - | chr1_1:64748149-64748168 | Msa0036290:three_prime_UTR | 35.0% | |
| ! | GGAAGGGTATAAATGGAATA+TGG | + | chr1_1:64748221-64748240 | None:intergenic | 35.0% |
| ! | TTCAGAAGGAAGGGTATAAA+TGG | + | chr1_1:64748228-64748247 | None:intergenic | 35.0% |
| !! | AAGGTTAGTTTCAGAAGGAA+GGG | + | chr1_1:64748237-64748256 | None:intergenic | 35.0% |
| !! | AAAGGTTAGTTTCAGAAGGA+AGG | + | chr1_1:64748238-64748257 | None:intergenic | 35.0% |
| ! | CACTCGTAATATGTCTTGTT+TGG | - | chr1_1:64748365-64748384 | Msa0036290:intron | 35.0% |
| !! | TGAAACTCACTTTTGTCCAA+CGG | + | chr1_1:64748400-64748419 | None:intergenic | 35.0% |
| TAGCTCAACTGATAGAAATG+TGG | + | chr1_1:64748429-64748448 | None:intergenic | 35.0% | |
| CTCGACATAATTCAAAATCG+TGG | + | chr1_1:64748544-64748563 | None:intergenic | 35.0% | |
| ! | TTCTACTAACTTGTAAGGAC+TGG | + | chr1_1:64748732-64748751 | None:intergenic | 35.0% |
| AGTCCTTACAAGTTAGTAGA+AGG | - | chr1_1:64748731-64748750 | Msa0036290:intron | 35.0% | |
| TTAGTAGAAGGACCAAGTTA+TGG | - | chr1_1:64748743-64748762 | Msa0036290:intron | 35.0% | |
| TAGTAGAAGGACCAAGTTAT+GGG | - | chr1_1:64748744-64748763 | Msa0036290:intron | 35.0% | |
| GAATAGGCAAAAAAAGACCT+TGG | + | chr1_1:64748783-64748802 | None:intergenic | 35.0% | |
| TTGCCTATTCCCAAATTACA+AGG | - | chr1_1:64748793-64748812 | Msa0036290:intron | 35.0% | |
| TGCCTATTCCCAAATTACAA+GGG | - | chr1_1:64748794-64748813 | Msa0036290:intron | 35.0% | |
| GCATTTACACCCTTGTAATT+TGG | + | chr1_1:64748806-64748825 | None:intergenic | 35.0% | |
| !! | CAAATATGGTAGCATTGATG+TGG | + | chr1_1:64748915-64748934 | None:intergenic | 35.0% |
| CACATCAATGCTACCATATT+TGG | - | chr1_1:64748913-64748932 | Msa0036290:intron | 35.0% | |
| CTTAGAAATTTAGGTCATCG+GGG | + | chr1_1:64749021-64749040 | None:intergenic | 35.0% | |
| CCTTAGAAATTTAGGTCATC+GGG | + | chr1_1:64749022-64749041 | None:intergenic | 35.0% | |
| GCCTTAGAAATTTAGGTCAT+CGG | + | chr1_1:64749023-64749042 | None:intergenic | 35.0% | |
| ! | AATGGAAGGACCATTTTGAA+CGG | - | chr1_1:64749142-64749161 | Msa0036290:intron | 35.0% |
| CAAGAGTGAACAAGCATAAT+TGG | + | chr1_1:64749239-64749258 | None:intergenic | 35.0% | |
| !! | TTATTATCTGCTGATGGACT+TGG | - | chr1_1:64749265-64749284 | Msa0036290:intron | 35.0% |
| !! | TGCTTTGTTGTTGTTGTTGA+AGG | - | chr1_1:64749298-64749317 | Msa0036290:intron | 35.0% |
| AGTGAAGGCTTCTTATATGA+TGG | - | chr1_1:64749401-64749420 | Msa0036290:intron | 35.0% | |
| GTAAATGTTCAGACTTATGG+AGG | - | chr1_1:64749423-64749442 | Msa0036290:intron | 35.0% | |
| ! | TATGGCATACTTGGTTTGAT+AGG | - | chr1_1:64749451-64749470 | Msa0036290:intron | 35.0% |
| ! | ATGGCATACTTGGTTTGATA+GGG | - | chr1_1:64749452-64749471 | Msa0036290:intron | 35.0% |
| AGAGTAGGAATACGCAAAAT+GGG | + | chr1_1:64749555-64749574 | None:intergenic | 35.0% | |
| AAGAGTAGGAATACGCAAAA+TGG | + | chr1_1:64749556-64749575 | None:intergenic | 35.0% | |
| GGAGAGCTAACAATAAAAAC+AGG | + | chr1_1:64749767-64749786 | None:intergenic | 35.0% | |
| !! | AGTTAGTCTTAGGTCATGTT+TGG | + | chr1_1:64749883-64749902 | None:intergenic | 35.0% |
| CTAAACATTATGGTTCAGTG+AGG | - | chr1_1:64749936-64749955 | Msa0036290:intron | 35.0% | |
| AATCAGTGGTTAAGGACTTA+AGG | + | chr1_1:64750060-64750079 | None:intergenic | 35.0% | |
| !! | AATTTGGTTTGAAACCTTCC+TGG | + | chr1_1:64750363-64750382 | None:intergenic | 35.0% |
| GAACACGAAAGATTGTTCAA+AGG | + | chr1_1:64750565-64750584 | None:intergenic | 35.0% | |
| TGAACAATCTTTCGTGTTCA+TGG | - | chr1_1:64750566-64750585 | Msa0036290:intron | 35.0% | |
| TGTTCATGGATTCAAACTAG+TGG | - | chr1_1:64750580-64750599 | Msa0036290:intron | 35.0% | |
| CTGTACTACGAGGAAAAAAT+GGG | + | chr1_1:64750724-64750743 | None:intergenic | 35.0% | |
| AAAAAACATCATTCAGAGCC+TGG | - | chr1_1:64750864-64750883 | Msa0036290:intron | 35.0% | |
| ATAGGAAAACCAACTATAGC+AGG | + | chr1_1:64750927-64750946 | None:intergenic | 35.0% | |
| !!! | AGTTGGTTTTCCTATTCTTC+AGG | - | chr1_1:64750932-64750951 | Msa0036290:intron | 35.0% |
| ATCACAACCAGATATCAGTA+TGG | - | chr1_1:64750960-64750979 | Msa0036290:intron | 35.0% | |
| TACAGTACCATACTGATATC+TGG | + | chr1_1:64750970-64750989 | None:intergenic | 35.0% | |
| GCAATAACAACTCAAGAATG+TGG | + | chr1_1:64751014-64751033 | None:intergenic | 35.0% | |
| CATTGAGACCTTTCAAATCA+CGG | - | chr1_1:64751049-64751068 | Msa0036290:CDS | 35.0% | |
| ATTGAGACCTTTCAAATCAC+GGG | - | chr1_1:64751050-64751069 | Msa0036290:CDS | 35.0% | |
| TATAAGACCCGTGATTTGAA+AGG | + | chr1_1:64751060-64751079 | None:intergenic | 35.0% | |
| ! | AAATCACGGGTCTTATACTT+GGG | - | chr1_1:64751063-64751082 | Msa0036290:CDS | 35.0% |
| TGAAATGCATGCGAATATGT+TGG | - | chr1_1:64751298-64751317 | Msa0036290:intron | 35.0% | |
| !! | CAAAGAGCATTATGTGGAAT+TGG | - | chr1_1:64751485-64751504 | Msa0036290:intron | 35.0% |
| GCAAGCTACATTTAATGTCA+GGG | + | chr1_1:64751710-64751729 | None:intergenic | 35.0% | |
| AGCAAGCTACATTTAATGTC+AGG | + | chr1_1:64751711-64751730 | None:intergenic | 35.0% | |
| ! | TTCAAGTTATTGCGCATTGA+GGG | - | chr1_1:64751915-64751934 | Msa0036290:intron | 35.0% |
| ! | TCTTTTGCACACTTACGTAT+CGG | - | chr1_1:64752062-64752081 | Msa0036290:intron | 35.0% |
| GAAAGAACGGTTTATTGCAT+AGG | + | chr1_1:64752214-64752233 | None:intergenic | 35.0% | |
| AAACCGTTCTTTCAAACTGA+TGG | - | chr1_1:64752221-64752240 | Msa0036290:intron | 35.0% | |
| AGCTTGGCAAATAACTATGT+TGG | - | chr1_1:64752530-64752549 | Msa0036290:CDS | 35.0% | |
| ! | GCAAATAACTATGTTGGTGA+AGG | - | chr1_1:64752536-64752555 | Msa0036290:CDS | 35.0% |
| ACTATACGCCAATCATTTCT+CGG | - | chr1_1:64752572-64752591 | Msa0036290:CDS | 35.0% | |
| ATGGTATACCGAGAAATGAT+TGG | + | chr1_1:64752583-64752602 | None:intergenic | 35.0% | |
| !! | TGGATTAGTTAAAGAGGGTA+TGG | - | chr1_1:64752750-64752769 | Msa0036290:intron | 35.0% |
| !! | GGATTAGTTAAAGAGGGTAT+GGG | - | chr1_1:64752751-64752770 | Msa0036290:intron | 35.0% |
| ! | GATTAGTTAAAGAGGGTATG+GGG | - | chr1_1:64752752-64752771 | Msa0036290:intron | 35.0% |
| ! | TAAGGGGTGTAATGTGATTA+AGG | - | chr1_1:64752858-64752877 | Msa0036290:intron | 35.0% |
| GATAATTTCGTCCTGCAATA+TGG | - | chr1_1:64753050-64753069 | Msa0036290:intron | 35.0% | |
| TCATGGGAGACAACAAATTA+CGG | + | chr1_1:64753190-64753209 | None:intergenic | 35.0% | |
| TCTCCCATGATATTCTGAAT+GGG | - | chr1_1:64753200-64753219 | Msa0036290:intron | 35.0% | |
| CAAAATTTGGATGAACTCCA+TGG | + | chr1_1:64753278-64753297 | None:intergenic | 35.0% | |
| ! | CTAAAGGAAAATTTGTTCGG+TGG | - | chr1_1:64753821-64753840 | Msa0036290:intron | 35.0% |
| ATTCGTGGTTAGAAATGACA+TGG | - | chr1_1:64753952-64753971 | Msa0036290:intron | 35.0% | |
| TTCGTGGTTAGAAATGACAT+GGG | - | chr1_1:64753953-64753972 | Msa0036290:intron | 35.0% | |
| ! | CAAATATTGAATGGTAACGC+AGG | + | chr1_1:64754389-64754408 | None:intergenic | 35.0% |
| ATCTAGACATGCTTCACAAT+TGG | - | chr1_1:64754463-64754482 | Msa0036290:intron | 35.0% | |
| AGACACAGAAGAAATTAAGG+GGG | + | chr1_1:64754540-64754559 | None:intergenic | 35.0% | |
| GGTATTATAGTTGTGTTTGC+TGG | - | chr1_1:64754838-64754857 | Msa0036290:CDS | 35.0% | |
| GTGGAACTAGAATAGGATAT+TGG | - | chr1_1:64754874-64754893 | Msa0036290:CDS | 35.0% | |
| ! | GGAAGAAAGTTCATTTGCTA+AGG | + | chr1_1:64754948-64754967 | None:intergenic | 35.0% |
| CATAATCCAACCAAATGCTA+GGG | + | chr1_1:64754969-64754988 | None:intergenic | 35.0% | |
| ! | TTGATGCCATGTTTCTGACT+GGG | + | chr1_1:64747940-64747959 | None:intergenic | 40.0% |
| GAAGAATGGAGAAGAATGTG+CGG | + | chr1_1:64747974-64747993 | None:intergenic | 40.0% | |
| ! | TGAGTGATGGAGATGAAGAA+TGG | + | chr1_1:64747988-64748007 | None:intergenic | 40.0% |
| TTGAGGTTGAGTTTGAGTGA+TGG | + | chr1_1:64748001-64748020 | None:intergenic | 40.0% | |
| !! | GAAATGGTGATGATGGTTTG+AGG | + | chr1_1:64748018-64748037 | None:intergenic | 40.0% |
| ! | TAGCGAAGAAATGGTGATGA+TGG | + | chr1_1:64748025-64748044 | None:intergenic | 40.0% |
| GTGATGAATTTGGGAGATTG+CGG | + | chr1_1:64748048-64748067 | None:intergenic | 40.0% | |
| !! | GGATTGGGATTTTGAAGATG+TGG | + | chr1_1:64748107-64748126 | None:intergenic | 40.0% |
| CGTTAACAATGGAAACGGAT+TGG | + | chr1_1:64748123-64748142 | None:intergenic | 40.0% | |
| !! | CGCAAAAGGTTAGTTTCAGA+AGG | + | chr1_1:64748242-64748261 | None:intergenic | 40.0% |
| AAACGACAATTAATCGCAGC+TGG | - | chr1_1:64748282-64748301 | Msa0036290:CDS | 40.0% | |
| ! | ATCGACTCCTACAATTTCAG+GGG | + | chr1_1:64748498-64748517 | None:intergenic | 40.0% |
| ! | GATCGACTCCTACAATTTCA+GGG | + | chr1_1:64748499-64748518 | None:intergenic | 40.0% |
| ! | TGATCGACTCCTACAATTTC+AGG | + | chr1_1:64748500-64748519 | None:intergenic | 40.0% |
| TGTCGAGCAACTTGATCATT+CGG | - | chr1_1:64748557-64748576 | Msa0036290:intron | 40.0% | |
| ! | GGTCCTTCTACTAACTTGTA+AGG | + | chr1_1:64748737-64748756 | None:intergenic | 40.0% |
| TTGAATGACGTCCCATAACT+TGG | + | chr1_1:64748758-64748777 | None:intergenic | 40.0% | |
| CACCCTTGTAATTTGGGAAT+AGG | + | chr1_1:64748799-64748818 | None:intergenic | 40.0% | |
| TACGTAGAGGACCACATATT+CGG | + | chr1_1:64748888-64748907 | None:intergenic | 40.0% | |
| TTGATGTGGAATCTACGTAG+AGG | + | chr1_1:64748901-64748920 | None:intergenic | 40.0% | |
| CCCGATGACCTAAATTTCTA+AGG | - | chr1_1:64749019-64749038 | Msa0036290:CDS | 40.0% | |
| TGCGATATGTTTAGTCAACG+TGG | - | chr1_1:64749089-64749108 | Msa0036290:intron | 40.0% | |
| ! | TTGTTGTTGAAGGTACGATG+TGG | - | chr1_1:64749308-64749327 | Msa0036290:intron | 40.0% |
| ! | TGTTGTTGAAGGTACGATGT+GGG | - | chr1_1:64749309-64749328 | Msa0036290:intron | 40.0% |
| AATGTTCAGACTTATGGAGG+TGG | - | chr1_1:64749426-64749445 | Msa0036290:intron | 40.0% | |
| ATGTTCAGACTTATGGAGGT+GGG | - | chr1_1:64749427-64749446 | Msa0036290:intron | 40.0% | |
| TCAAGATGAATGGCAAGAGT+AGG | + | chr1_1:64749570-64749589 | None:intergenic | 40.0% | |
| !! | ATAGTACCGGTCAAGATGAA+TGG | + | chr1_1:64749580-64749599 | None:intergenic | 40.0% |
| AACTCCTACTTAGGCTTCTT+TGG | - | chr1_1:64749650-64749669 | Msa0036290:CDS | 40.0% | |
| CAATCCAAAGAAGCCTAAGT+AGG | + | chr1_1:64749657-64749676 | None:intergenic | 40.0% | |
| CTTGTGGTGAGACTGTTTAT+CGG | - | chr1_1:64749708-64749727 | Msa0036290:CDS | 40.0% | |
| TTGAGACTACTGCTCACTTT+AGG | + | chr1_1:64749969-64749988 | None:intergenic | 40.0% | |
| AAAACCAGACATTTCCCTCA+AGG | + | chr1_1:64750213-64750232 | None:intergenic | 40.0% | |
| ATTGTTTAGCACAGTGAACC+AGG | - | chr1_1:64750342-64750361 | Msa0036290:intron | 40.0% | |
| TCGAGTTTCATCGAGAGTAA+AGG | + | chr1_1:64750403-64750422 | None:intergenic | 40.0% | |
| TTTACTCTCGATGAAACTCG+AGG | - | chr1_1:64750402-64750421 | Msa0036290:intron | 40.0% | |
| GCTGTACTACGAGGAAAAAA+TGG | + | chr1_1:64750725-64750744 | None:intergenic | 40.0% | |
| GTGATCAAGACCTGAAGAAT+AGG | + | chr1_1:64750945-64750964 | None:intergenic | 40.0% | |
| ! | CAAATCACGGGTCTTATACT+TGG | - | chr1_1:64751062-64751081 | Msa0036290:CDS | 40.0% |
| GTTGTGCTAACTGTGATCTT+AGG | - | chr1_1:64751085-64751104 | Msa0036290:CDS | 40.0% | |
| TGTGATCTTAGGAAGAGCAA+TGG | - | chr1_1:64751096-64751115 | Msa0036290:CDS | 40.0% | |
| CTTAGGAAGAGCAATGGTTA+AGG | - | chr1_1:64751102-64751121 | Msa0036290:CDS | 40.0% | |
| ! | TTAAAAGGTGCACTTTCCCA+TGG | - | chr1_1:64751159-64751178 | Msa0036290:CDS | 40.0% |
| ATGCATGCGAATATGTTGGA+AGG | - | chr1_1:64751302-64751321 | Msa0036290:intron | 40.0% | |
| TAGAAAGGGATGATTGCTTG+AGG | - | chr1_1:64751346-64751365 | Msa0036290:intron | 40.0% | |
| AGAAAGGGATGATTGCTTGA+GGG | - | chr1_1:64751347-64751366 | Msa0036290:intron | 40.0% | |
| !! | AGGCATCAAAGAGCATTATG+TGG | - | chr1_1:64751479-64751498 | Msa0036290:intron | 40.0% |
| ! | AAGACCACTGGTACTTGTTA+AGG | + | chr1_1:64751516-64751535 | None:intergenic | 40.0% |
| TGTACAATTCCATTCCAGCA+TGG | + | chr1_1:64751661-64751680 | None:intergenic | 40.0% | |
| ATTCATTGTTTGCACCTCCA+AGG | + | chr1_1:64751864-64751883 | None:intergenic | 40.0% | |
| ! | CTTCAAGTTATTGCGCATTG+AGG | - | chr1_1:64751914-64751933 | Msa0036290:intron | 40.0% |
| !! | TGTTGACTCTTGTGAATCTC+CGG | - | chr1_1:64751942-64751961 | Msa0036290:intron | 40.0% |
| TTGTGAATCTCCGGATGATT+TGG | - | chr1_1:64751951-64751970 | Msa0036290:intron | 40.0% | |
| ! | GGGTATGGGGTTTGAAATAA+TGG | - | chr1_1:64752765-64752784 | Msa0036290:intron | 40.0% |
| TGACAAACTCTCCATATTGC+AGG | + | chr1_1:64753064-64753083 | None:intergenic | 40.0% | |
| CATGGGAGACAACAAATTAC+GGG | + | chr1_1:64753189-64753208 | None:intergenic | 40.0% | |
| GTCTCCCATGATATTCTGAA+TGG | - | chr1_1:64753199-64753218 | Msa0036290:intron | 40.0% | |
| GGTCCCATTCAGAATATCAT+GGG | + | chr1_1:64753206-64753225 | None:intergenic | 40.0% | |
| TGGTCCCATTCAGAATATCA+TGG | + | chr1_1:64753207-64753226 | None:intergenic | 40.0% | |
| TCTAACAGTGTCTGCAGATA+TGG | - | chr1_1:64753251-64753270 | Msa0036290:intron | 40.0% | |
| AAGAAGAGATGTGATTCCAC+TGG | + | chr1_1:64753382-64753401 | None:intergenic | 40.0% | |
| AATCCAAAACCTTCCAACTC+AGG | - | chr1_1:64753419-64753438 | Msa0036290:intron | 40.0% | |
| GTTAGAAATGACATGGGATG+CGG | - | chr1_1:64753959-64753978 | Msa0036290:intron | 40.0% | |
| TTGCTCAACTTTCAATGCAC+AGG | - | chr1_1:64754041-64754060 | Msa0036290:intron | 40.0% | |
| TGAAACCTTGTCATATGCTC+AGG | - | chr1_1:64754125-64754144 | Msa0036290:intron | 40.0% | |
| TTGAAACTGGACTCATTTCC+CGG | + | chr1_1:64754257-64754276 | None:intergenic | 40.0% | |
| !!! | TTTTGGAATCAGGTATTGGC+TGG | - | chr1_1:64754300-64754319 | Msa0036290:intron | 40.0% |
| ! | ATATTGAATGGTAACGCAGG+TGG | + | chr1_1:64754386-64754405 | None:intergenic | 40.0% |
| AATTGGAAATACGAGCACCA+TGG | - | chr1_1:64754480-64754499 | Msa0036290:intron | 40.0% | |
| GAACTTTCTTCCCTAGCATT+TGG | - | chr1_1:64754956-64754975 | Msa0036290:CDS | 40.0% | |
| TTTCTTCCCTAGCATTTGGT+TGG | - | chr1_1:64754960-64754979 | Msa0036290:CDS | 40.0% | |
| GCATAATCCAACCAAATGCT+AGG | + | chr1_1:64754970-64754989 | None:intergenic | 40.0% | |
| ! | GTTGATGCCATGTTTCTGAC+TGG | + | chr1_1:64747941-64747960 | None:intergenic | 45.0% |
| AGATTGCGGTAGCGAAGAAA+TGG | + | chr1_1:64748034-64748053 | None:intergenic | 45.0% | |
| !! | CAATGGAATGAAGGTACCTG+TGG | + | chr1_1:64748188-64748207 | None:intergenic | 45.0% |
| GAAGAATGGAACCTCAAACC+AGG | - | chr1_1:64748327-64748346 | Msa0036290:intron | 45.0% | |
| ACAATTTCAGGGGGGCAAAT+TGG | + | chr1_1:64748488-64748507 | None:intergenic | 45.0% | |
| ATTTGCCCCCCTGAAATTGT+AGG | - | chr1_1:64748488-64748507 | Msa0036290:intron | 45.0% | |
| TCGACTCCTACAATTTCAGG+GGG | + | chr1_1:64748497-64748516 | None:intergenic | 45.0% | |
| GGAGTCGATCATTTACGAGT+AGG | - | chr1_1:64748509-64748528 | Msa0036290:intron | 45.0% | |
| TGGGACGTCATTCAAAACCA+AGG | - | chr1_1:64748763-64748782 | Msa0036290:intron | 45.0% | |
| GACAACACCTCCAATTTCCT+GGG | - | chr1_1:64748828-64748847 | Msa0036290:intron | 45.0% | |
| ACAACACCTCCAATTTCCTG+GGG | - | chr1_1:64748829-64748848 | Msa0036290:intron | 45.0% | |
| AATTCACCCCAGGAAATTGG+AGG | + | chr1_1:64748838-64748857 | None:intergenic | 45.0% | |
| TCCAATTTCCTGGGGTGAAT+TGG | - | chr1_1:64748837-64748856 | Msa0036290:intron | 45.0% | |
| ACCAATTCACCCCAGGAAAT+TGG | + | chr1_1:64748841-64748860 | None:intergenic | 45.0% | |
| AATTTCCTGGGGTGAATTGG+TGG | - | chr1_1:64748840-64748859 | Msa0036290:intron | 45.0% | |
| ! | GACTGCTGCTTACAATTTCG+AGG | - | chr1_1:64749212-64749231 | Msa0036290:intron | 45.0% |
| !! | ATCTGCTGATGGACTTGGAA+TGG | - | chr1_1:64749270-64749289 | Msa0036290:intron | 45.0% |
| ! | TGAAGGTACGATGTGGGTAA+TGG | - | chr1_1:64749315-64749334 | Msa0036290:intron | 45.0% |
| TTCGGCTTCAGTTTCAGACA+TGG | + | chr1_1:64749372-64749391 | None:intergenic | 45.0% | |
| !! | AGACTTATGGAGGTGGGTTA+TGG | - | chr1_1:64749433-64749452 | Msa0036290:intron | 45.0% |
| ! | GATAGGGATTTGAGTGTTGC+AGG | - | chr1_1:64749468-64749487 | Msa0036290:intron | 45.0% |
| CTCTTGCCATTCATCTTGAC+CGG | - | chr1_1:64749571-64749590 | Msa0036290:intron | 45.0% | |
| CTATCCTTGAGGGAAATGTC+TGG | - | chr1_1:64750206-64750225 | Msa0036290:intron | 45.0% | |
| !!! | GTTGCCCTAGCGTTGTTTTT+TGG | - | chr1_1:64750238-64750257 | Msa0036290:intron | 45.0% |
| CGAGCCAAAAAACAACGCTA+GGG | + | chr1_1:64750245-64750264 | None:intergenic | 45.0% | |
| ACGAGCCAAAAAACAACGCT+AGG | + | chr1_1:64750246-64750265 | None:intergenic | 45.0% | |
| TTTAGCACAGTGAACCAGGA+AGG | - | chr1_1:64750346-64750365 | Msa0036290:intron | 45.0% | |
| CAGTGGATGATGAGAAGCTT+TGG | + | chr1_1:64750470-64750489 | None:intergenic | 45.0% | |
| TCATCATCCACTGCTTATGC+AGG | - | chr1_1:64750477-64750496 | Msa0036290:CDS | 45.0% | |
| TGAATCTAGGCTGTACTACG+AGG | + | chr1_1:64750734-64750753 | None:intergenic | 45.0% | |
| ! | AGCCTGGCATGGCAATTTTA+GGG | - | chr1_1:64750880-64750899 | Msa0036290:intron | 45.0% |
| TTCCCTAAAATTGCCATGCC+AGG | + | chr1_1:64750885-64750904 | None:intergenic | 45.0% | |
| GTTACTCTGCCTGCTATAGT+TGG | - | chr1_1:64750915-64750934 | Msa0036290:intron | 45.0% | |
| CATGCGAATATGTTGGAAGG+TGG | - | chr1_1:64751305-64751324 | Msa0036290:intron | 45.0% | |
| AGTGCCTTAACAAGTACCAG+TGG | - | chr1_1:64751509-64751528 | Msa0036290:intron | 45.0% | |
| ! | AAGTACCAGTGGTCTTGACA+AGG | - | chr1_1:64751520-64751539 | Msa0036290:intron | 45.0% |
| TATTGTACAATGGGCCATGC+TGG | - | chr1_1:64751644-64751663 | Msa0036290:intron | 45.0% | |
| TGTTCGCTAGCCAAATCATC+CGG | + | chr1_1:64751964-64751983 | None:intergenic | 45.0% | |
| GGTTGCTCTGTTTGACAATG+AGG | - | chr1_1:64751996-64752015 | Msa0036290:intron | 45.0% | |
| TGCTCTGTTTGACAATGAGG+AGG | - | chr1_1:64751999-64752018 | Msa0036290:intron | 45.0% | |
| AGCATCAGTTGTGAGAACAG+CGG | + | chr1_1:64752108-64752127 | None:intergenic | 45.0% | |
| ATAGCAATCATCGGTAGCGT+GGG | - | chr1_1:64752296-64752315 | Msa0036290:intron | 45.0% | |
| AAACAGCAGTGGTTAGACGT+AGG | + | chr1_1:64752439-64752458 | None:intergenic | 45.0% | |
| ! | ACGTCTAACCACTGCTGTTT+AGG | - | chr1_1:64752439-64752458 | Msa0036290:intron | 45.0% |
| ! | TCTAACCACTGCTGTTTAGG+TGG | - | chr1_1:64752442-64752461 | Msa0036290:intron | 45.0% |
| ! | CTAACCACTGCTGTTTAGGT+GGG | - | chr1_1:64752443-64752462 | Msa0036290:intron | 45.0% |
| TACTGAACAAATGGTTGCCG+TGG | + | chr1_1:64752826-64752845 | None:intergenic | 45.0% | |
| ACAAGTCCTTTCTGCAACTC+TGG | + | chr1_1:64753327-64753346 | None:intergenic | 45.0% | |
| !! | TTGCCTGAGTTGGAAGGTTT+TGG | + | chr1_1:64753425-64753444 | None:intergenic | 45.0% |
| TAGAGAGGAATTGCCTGAGT+TGG | + | chr1_1:64753435-64753454 | None:intergenic | 45.0% | |
| CTACTCACTGTAGGAATTCG+TGG | - | chr1_1:64753937-64753956 | Msa0036290:intron | 45.0% | |
| !! | AGAAGCGAGTATTGGACCTA+TGG | + | chr1_1:64753990-64754009 | None:intergenic | 45.0% |
| ATAGGTCCAATACTCGCTTC+TGG | - | chr1_1:64753989-64754008 | Msa0036290:intron | 45.0% | |
| TAGGTCCAATACTCGCTTCT+GGG | - | chr1_1:64753990-64754009 | Msa0036290:intron | 45.0% | |
| CAATTCCACAGTCAACCGTT+CGG | + | chr1_1:64754024-64754043 | None:intergenic | 45.0% | |
| TCAAGCCTGAGCATATGACA+AGG | + | chr1_1:64754133-64754152 | None:intergenic | 45.0% | |
| TTGTAACCATGTCTGGCTGT+TGG | - | chr1_1:64754170-64754189 | Msa0036290:intron | 45.0% | |
| TGGTGTAGGTCAGAGATGAA+TGG | + | chr1_1:64754641-64754660 | None:intergenic | 45.0% | |
| TTCATCTCTGACCTACACCA+AGG | - | chr1_1:64754641-64754660 | Msa0036290:CDS | 45.0% | |
| ! | CATAGACAAGATGCTGACTG+TGG | - | chr1_1:64754784-64754803 | Msa0036290:intron | 45.0% |
| ! | TGTGTTGCTGAACATGTGCA+TGG | - | chr1_1:64754817-64754836 | Msa0036290:intron | 45.0% |
| ! | ATAGTTGTGTTTGCTGGGGA+AGG | - | chr1_1:64754844-64754863 | Msa0036290:CDS | 45.0% |
| ! | TAGTTGTGTTTGCTGGGGAA+GGG | - | chr1_1:64754845-64754864 | Msa0036290:CDS | 45.0% |
| GGTGCTAGTGGAACTAGAAT+AGG | - | chr1_1:64754867-64754886 | Msa0036290:CDS | 45.0% | |
| !! | AATTATTAATGAAAAATATA+AGG | - | chr1_1:64749987-64750006 | Msa0036290:intron | 5.0% |
| !! | ATTATTAATGAAAAATATAA+GGG | - | chr1_1:64749988-64750007 | Msa0036290:intron | 5.0% |
| !!! | ATATGTTTTAAAAAAATTAT+TGG | + | chr1_1:64750647-64750666 | None:intergenic | 5.0% |
| !! | ACAAAAAAAAAAAAAAAAAA+AGG | + | chr1_1:64754232-64754251 | None:intergenic | 5.0% |
| AACCCACCCAGTCAGAAACA+TGG | - | chr1_1:64747931-64747950 | Msa0036290:three_prime_UTR | 50.0% | |
| ! | TGCCATGTTTCTGACTGGGT+GGG | + | chr1_1:64747936-64747955 | None:intergenic | 50.0% |
| ! | ATGCCATGTTTCTGACTGGG+TGG | + | chr1_1:64747937-64747956 | None:intergenic | 50.0% |
| GAATGGAACCTCAAACCAGG+TGG | - | chr1_1:64748330-64748349 | Msa0036290:intron | 50.0% | |
| ! | AGTAACGTCCACCTGGTTTG+AGG | + | chr1_1:64748341-64748360 | None:intergenic | 50.0% |
| GTGAAGAAGTAACGTCCACC+TGG | + | chr1_1:64748348-64748367 | None:intergenic | 50.0% | |
| ! | TGTTTGGTTGCTTTCGCCGT+TGG | - | chr1_1:64748381-64748400 | Msa0036290:intron | 50.0% |
| CGACTCCTACAATTTCAGGG+GGG | + | chr1_1:64748496-64748515 | None:intergenic | 50.0% | |
| CGACAACACCTCCAATTTCC+TGG | - | chr1_1:64748827-64748846 | Msa0036290:intron | 50.0% | |
| GTAATCCACCAATTCACCCC+AGG | + | chr1_1:64748848-64748867 | None:intergenic | 50.0% | |
| !! | GCCTTCACTGACGCTGTTTT+CGG | + | chr1_1:64749390-64749409 | None:intergenic | 50.0% |
| !! | GAGGTGGGTTATGGCATACT+TGG | - | chr1_1:64749442-64749461 | Msa0036290:intron | 50.0% |
| ATGCGTACCTGCATAAGCAG+TGG | + | chr1_1:64750487-64750506 | None:intergenic | 50.0% | |
| ACATCATTCAGAGCCTGGCA+TGG | - | chr1_1:64750869-64750888 | Msa0036290:intron | 50.0% | |
| ! | GAGCCTGGCATGGCAATTTT+AGG | - | chr1_1:64750879-64750898 | Msa0036290:intron | 50.0% |
| TACAATGGGCCATGCTGGAA+TGG | - | chr1_1:64751649-64751668 | Msa0036290:intron | 50.0% | |
| GATACTCAACCTAGCTGCCT+TGG | - | chr1_1:64751844-64751863 | Msa0036290:intron | 50.0% | |
| TGGCTAGCGAACAAGCGATT+CGG | - | chr1_1:64751971-64751990 | Msa0036290:intron | 50.0% | |
| ! | TAGCGAACAAGCGATTCGGA+TGG | - | chr1_1:64751975-64751994 | Msa0036290:intron | 50.0% |
| GCATCAGTTGTGAGAACAGC+GGG | + | chr1_1:64752107-64752126 | None:intergenic | 50.0% | |
| CATAGCAATCATCGGTAGCG+TGG | - | chr1_1:64752295-64752314 | Msa0036290:intron | 50.0% | |
| TGAACCCACCTAAACAGCAG+TGG | + | chr1_1:64752450-64752469 | None:intergenic | 50.0% | |
| GTGGGTTCAGATTCTGCTCA+AGG | - | chr1_1:64752461-64752480 | Msa0036290:intron | 50.0% | |
| TCAGATTCTGCTCAAGGAGC+TGG | - | chr1_1:64752467-64752486 | Msa0036290:intron | 50.0% | |
| CTCATGGCCTGAAACATGGT+GGG | + | chr1_1:64752497-64752516 | None:intergenic | 50.0% | |
| TCTCATGGCCTGAAACATGG+TGG | + | chr1_1:64752498-64752517 | None:intergenic | 50.0% | |
| ACGTCTCATGGCCTGAAACA+TGG | + | chr1_1:64752501-64752520 | None:intergenic | 50.0% | |
| GCTCGCAACTATACGTCTCA+TGG | + | chr1_1:64752513-64752532 | None:intergenic | 50.0% | |
| GAGACGTATAGTTGCGAGCT+TGG | - | chr1_1:64752514-64752533 | Msa0036290:intron | 50.0% | |
| ! | GTCTCAAGCTGTTTCAGCCA+CGG | - | chr1_1:64752806-64752825 | Msa0036290:intron | 50.0% |
| GTCCTTTCTGCAACTCTGGT+CGG | + | chr1_1:64753323-64753342 | None:intergenic | 50.0% | |
| ! | GAGGAATTGCCTGAGTTGGA+AGG | + | chr1_1:64753431-64753450 | None:intergenic | 50.0% |
| ATGGGATGCGGATCAACCAT+AGG | - | chr1_1:64753971-64753990 | Msa0036290:intron | 50.0% | |
| AGGTCCAATACTCGCTTCTG+GGG | - | chr1_1:64753991-64754010 | Msa0036290:intron | 50.0% | |
| GCTCAGGCTTGATACCGAAA+AGG | - | chr1_1:64754141-64754160 | Msa0036290:intron | 50.0% | |
| CAAGAACCAACAGCCAGACA+TGG | + | chr1_1:64754179-64754198 | None:intergenic | 50.0% | |
| AACGCAGGTGGAGGTTTCAA+CGG | + | chr1_1:64754374-64754393 | None:intergenic | 50.0% | |
| ! | TTGAATGGTAACGCAGGTGG+AGG | + | chr1_1:64754383-64754402 | None:intergenic | 50.0% |
| ! | ACGTGGTTTGGCCAAGAGTA+AGG | + | chr1_1:64754415-64754434 | None:intergenic | 50.0% |
| TTACTCTTGGCCAAACCACG+TGG | - | chr1_1:64754414-64754433 | Msa0036290:intron | 50.0% | |
| TACTCTTGGCCAAACCACGT+GGG | - | chr1_1:64754415-64754434 | Msa0036290:intron | 50.0% | |
| AATTCAACCTAGTGCCCACG+TGG | + | chr1_1:64754432-64754451 | None:intergenic | 50.0% | |
| CCATGGAAATACATGCCGCT+CGG | - | chr1_1:64754497-64754516 | Msa0036290:intron | 50.0% | |
| ! | AGTTGTGTTTGCTGGGGAAG+GGG | - | chr1_1:64754846-64754865 | Msa0036290:CDS | 50.0% |
| TGCTCTCGGAGCAAATAGAG+AGG | + | chr1_1:64755026-64755045 | None:intergenic | 50.0% | |
| TGGACTCATTTCCACGCCAC+AGG | - | chr1_1:64748169-64748188 | Msa0036290:three_prime_UTR | 55.0% | |
| !! | GAATGAAGGTACCTGTGGCG+TGG | + | chr1_1:64748183-64748202 | None:intergenic | 55.0% |
| AGCTGCACACGAAGCGCAAA+AGG | + | chr1_1:64748256-64748275 | None:intergenic | 55.0% | |
| GCCGAAAACAGCGTCAGTGA+AGG | - | chr1_1:64749386-64749405 | Msa0036290:intron | 55.0% | |
| GGGATGATTGCTTGAGGGCA+AGG | - | chr1_1:64751352-64751371 | Msa0036290:intron | 55.0% | |
| ! | TTGGGCCTTGTCAAGACCAC+TGG | + | chr1_1:64751528-64751547 | None:intergenic | 55.0% |
| ACTCAACCTAGCTGCCTTGG+AGG | - | chr1_1:64751847-64751866 | Msa0036290:intron | 55.0% | |
| TTTGCACCTCCAAGGCAGCT+AGG | + | chr1_1:64751856-64751875 | None:intergenic | 55.0% | |
| TGGTGCACCCACCATGTTTC+AGG | - | chr1_1:64752487-64752506 | Msa0036290:intron | 55.0% | |
| GTGTCTGCAGATATGGCCCA+TGG | - | chr1_1:64753258-64753277 | Msa0036290:intron | 55.0% | |
| CTTTCTGCAACTCTGGTCGG+TGG | + | chr1_1:64753320-64753339 | None:intergenic | 55.0% | |
| CACCGACCAGAGTTGCAGAA+AGG | - | chr1_1:64753318-64753337 | Msa0036290:intron | 55.0% | |
| AACCAGCGCTATGCTACCAG+TGG | - | chr1_1:64753363-64753382 | Msa0036290:intron | 55.0% | |
| TTCCACTGGTAGCATAGCGC+TGG | + | chr1_1:64753368-64753387 | None:intergenic | 55.0% | |
| CCAACCCCAGAAGCGAGTAT+TGG | + | chr1_1:64753998-64754017 | None:intergenic | 55.0% | |
| !! | CCAATACTCGCTTCTGGGGT+TGG | - | chr1_1:64753995-64754014 | Msa0036290:intron | 55.0% |
| !! | TTCTGGGGTTGGCATCCGAA+CGG | - | chr1_1:64754006-64754025 | Msa0036290:intron | 55.0% |
| AACCTAGTGCCCACGTGGTT+TGG | + | chr1_1:64754427-64754446 | None:intergenic | 55.0% | |
| CCGAGCGGCATGTATTTCCA+TGG | + | chr1_1:64754500-64754519 | None:intergenic | 55.0% | |
| GGCATCCGAACGGTTGACTG+TGG | - | chr1_1:64754016-64754035 | Msa0036290:intron | 60.0% | |
| GGCCAAACCACGTGGGCACT+AGG | - | chr1_1:64754422-64754441 | Msa0036290:intron | 65.0% | |
| !! | TGCTGGGGAAGGGGTGCTAG+TGG | - | chr1_1:64754855-64754874 | Msa0036290:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 64747896 | 64755126 | 64747896 | ID=Msa0036290;Name=Msa0036290 |
| chr1_1 | mRNA | 64747896 | 64755126 | 64747896 | ID=Msa0036290-mRNA-1;Parent=Msa0036290;Name=Msa0036290-mRNA-1;_AED=0.13;_eAED=0.13;_QI=54|1|1|1|1|1|9|312|524 |
| chr1_1 | exon | 64747896 | 64748316 | 64747896 | ID=Msa0036290-mRNA-1:exon:20783;Parent=Msa0036290-mRNA-1 |
| chr1_1 | exon | 64748960 | 64749072 | 64748960 | ID=Msa0036290-mRNA-1:exon:20782;Parent=Msa0036290-mRNA-1 |
| chr1_1 | exon | 64749582 | 64749763 | 64749582 | ID=Msa0036290-mRNA-1:exon:20781;Parent=Msa0036290-mRNA-1 |
| chr1_1 | exon | 64750429 | 64750561 | 64750429 | ID=Msa0036290-mRNA-1:exon:20780;Parent=Msa0036290-mRNA-1 |
| chr1_1 | exon | 64751002 | 64751241 | 64751002 | ID=Msa0036290-mRNA-1:exon:20779;Parent=Msa0036290-mRNA-1 |
| chr1_1 | exon | 64752524 | 64752671 | 64752524 | ID=Msa0036290-mRNA-1:exon:20778;Parent=Msa0036290-mRNA-1 |
| chr1_1 | exon | 64753430 | 64753702 | 64753430 | ID=Msa0036290-mRNA-1:exon:20777;Parent=Msa0036290-mRNA-1 |
| chr1_1 | exon | 64754613 | 64754748 | 64754613 | ID=Msa0036290-mRNA-1:exon:20776;Parent=Msa0036290-mRNA-1 |
| chr1_1 | exon | 64754832 | 64755126 | 64754832 | ID=Msa0036290-mRNA-1:exon:20775;Parent=Msa0036290-mRNA-1 |
| chr1_1 | five_prime_UTR | 64755073 | 64755126 | 64755073 | ID=Msa0036290-mRNA-1:five_prime_utr;Parent=Msa0036290-mRNA-1 |
| chr1_1 | CDS | 64754832 | 64755072 | 64754832 | ID=Msa0036290-mRNA-1:cds;Parent=Msa0036290-mRNA-1 |
| chr1_1 | CDS | 64754613 | 64754748 | 64754613 | ID=Msa0036290-mRNA-1:cds;Parent=Msa0036290-mRNA-1 |
| chr1_1 | CDS | 64753430 | 64753702 | 64753430 | ID=Msa0036290-mRNA-1:cds;Parent=Msa0036290-mRNA-1 |
| chr1_1 | CDS | 64752524 | 64752671 | 64752524 | ID=Msa0036290-mRNA-1:cds;Parent=Msa0036290-mRNA-1 |
| chr1_1 | CDS | 64751002 | 64751241 | 64751002 | ID=Msa0036290-mRNA-1:cds;Parent=Msa0036290-mRNA-1 |
| chr1_1 | CDS | 64750429 | 64750561 | 64750429 | ID=Msa0036290-mRNA-1:cds;Parent=Msa0036290-mRNA-1 |
| chr1_1 | CDS | 64749582 | 64749763 | 64749582 | ID=Msa0036290-mRNA-1:cds;Parent=Msa0036290-mRNA-1 |
| chr1_1 | CDS | 64748960 | 64749072 | 64748960 | ID=Msa0036290-mRNA-1:cds;Parent=Msa0036290-mRNA-1 |
| chr1_1 | CDS | 64748208 | 64748316 | 64748208 | ID=Msa0036290-mRNA-1:cds;Parent=Msa0036290-mRNA-1 |
| chr1_1 | three_prime_UTR | 64747896 | 64748207 | 64747896 | ID=Msa0036290-mRNA-1:three_prime_utr;Parent=Msa0036290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
