AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0218860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0218860 MtrunA17_Chr2g0321131 87.335 379 47 1 163 541 17 394 0.0 687
Msa0218860 MtrunA17_Chr2g0321131 95.495 111 4 1 28 138 1 110 1.36e-66 221
Msa0218860 MtrunA17_Chr3g0095421 27.302 315 185 14 233 528 70 359 5.79e-21 94.7
Msa0218860 MtrunA17_Chr7g0274061 25.704 284 188 9 206 480 14 283 3.67e-13 70.9
Msa0218860 MtrunA17_Chr3g0127491 23.171 246 160 7 246 478 81 310 9.12e-12 67.0
Msa0218860 MtrunA17_Chr7g0274071 23.692 325 215 10 206 520 16 317 7.44e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0218860 AT2G27680.1 80.802 349 66 1 192 540 36 383 0.0 617
Msa0218860 AT2G27680.1 76.923 65 15 0 74 138 36 100 9.34e-28 115
Msa0218860 AT1G06690.1 28.094 299 169 12 206 480 49 325 2.15e-19 90.5

Find 121 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAATTTCAATTCTCCAATT+TGG 0.179335 2_1:-66339561 Msa0218860:CDS
CCAAATTGGAGAATTGAAAT+TGG 0.221854 2_1:+66339561 None:intergenic
TCCTTCTACTGAGACAAAAT+TGG 0.233783 2_1:+66335195 None:intergenic
GAAATATGTAGAGTTCTTAA+TGG 0.252504 2_1:-66339303 Msa0218860:CDS
GCAGAGCTTTGTCAGCTTAC+AGG 0.253188 2_1:-66336142 Msa0218860:CDS
AGGTGGGATTATTCAAATTC+AGG 0.258984 2_1:-66336506 Msa0218860:CDS
CTTGTTGCAATTCCTCTTGT+TGG 0.278987 2_1:+66337740 None:intergenic
GGGCCAGCTGAAGATTTATA+TGG 0.317017 2_1:-66337087 Msa0218860:CDS
GTGGATGCTTGGGGAGGATG+GGG 0.330296 2_1:-66335716 Msa0218860:CDS
TGGATTAACCACTTTCGATA+TGG 0.343690 2_1:-66337528 Msa0218860:CDS
ATGGCAGATGGTGGATGCTT+GGG 0.345508 2_1:-66335726 Msa0218860:intron
TATGCGTCCCCAACAGAAAA+TGG 0.349887 2_1:-66336164 Msa0218860:CDS
AAGCTACTTGTCATCTTAAC+TGG 0.356854 2_1:+66336815 None:intergenic
GCGGATGGGGCAGAATTGAT+AGG 0.361415 2_1:-66337589 Msa0218860:CDS
GGTGGATGCTTGGGGAGGAT+GGG 0.363054 2_1:-66335717 Msa0218860:CDS
GTGGCAGACAAGTGGTGGTT+GGG 0.363851 2_1:-66339277 Msa0218860:CDS
AAGAGGATAACGAACCAAAT+TGG 0.367025 2_1:+66339547 None:intergenic
TGGTGGATGCTTGGGGAGGA+TGG 0.377292 2_1:-66335718 Msa0218860:CDS
AAGAAGATGTAAACAGCATA+AGG 0.390321 2_1:-66335383 Msa0218860:CDS
AAGGATCTTCTTAAAGTGAT+TGG 0.395916 2_1:-66335342 Msa0218860:CDS
CATCCCTCTCAAAATACAAA+AGG 0.396975 2_1:-66335904 Msa0218860:CDS
CAGTAATGGGAAGGATTCAT+TGG 0.414164 2_1:-66337651 Msa0218860:CDS
CGGCGCATTGTGGTCAGTAA+TGG 0.422536 2_1:-66337665 Msa0218860:CDS
TGGATATGCTTCAGTTCCAT+TGG 0.423981 2_1:-66336742 Msa0218860:intron
CATGGCAGATGGTGGATGCT+TGG 0.430168 2_1:-66335727 Msa0218860:intron
CAATGCGCCGATTATCCTCC+TGG 0.430412 2_1:+66337678 None:intergenic
AGGGATGGAGTGTTAATTGC+AGG 0.432846 2_1:+66335920 None:intergenic
GAGAATGGACGTGGAATCCT+TGG 0.433488 2_1:-66336762 Msa0218860:CDS
GTTGTTGAAGCGAGTGAAAG+TGG 0.443100 2_1:+66339470 None:intergenic
ATGCTTAAATACGCTGATGC+TGG 0.448278 2_1:-66337548 Msa0218860:CDS
ATGCTCCGGTATGCTGATTC+CGG 0.449274 2_1:-66339222 Msa0218860:CDS
TGACTACCCAGGAGGATAAT+CGG 0.450628 2_1:-66337685 Msa0218860:CDS
AAGAATAATTTGTAATCTCT+CGG 0.452147 2_1:+66336325 None:intergenic
TCGAATCAATCTTGCGCTGT+TGG 0.455461 2_1:+66339416 None:intergenic
GGCGCATTGTGGTCAGTAAT+GGG 0.456036 2_1:-66337664 Msa0218860:CDS
TTAATTGCAGGTCCAGCAAA+AGG 0.456349 2_1:+66335932 None:intergenic
GGAGGATGGGGTTTGTTCCA+AGG 0.459555 2_1:-66335704 Msa0218860:CDS
TGCAGGTATGGGACAGTAAT+GGG 0.460926 2_1:-66335998 Msa0218860:intron
CCTTCTACTGAGACAAAATT+GGG 0.465236 2_1:+66335196 None:intergenic
CGCTGTTGGTTCTCTGTGAG+TGG 0.468927 2_1:+66339430 None:intergenic
TGGCAAACGAGTGGCGGATG+GGG 0.475308 2_1:-66337602 Msa0218860:CDS
TAAGAGTTCGAAGAAGTCCT+TGG 0.482511 2_1:+66335687 None:intergenic
AACCTGCAGCCTGCTGTAGC+AGG 0.486594 2_1:-66335483 Msa0218860:intron
AGCGAGTGAAAGTGGAGAAT+AGG 0.486717 2_1:+66339478 None:intergenic
GATATAACTCGGGTTGTGAA+TGG 0.486800 2_1:-66337629 Msa0218860:CDS
GGCCAGCTGAAGATTTATAT+GGG 0.487964 2_1:-66337086 Msa0218860:CDS
TGTGGCAGACAAGTGGTGGT+TGG 0.493594 2_1:-66339278 Msa0218860:CDS
GCTGTTGGTTCTCTGTGAGT+GGG 0.496090 2_1:+66339431 None:intergenic
GTGGCAAACGAGTGGCGGAT+GGG 0.497300 2_1:-66337603 Msa0218860:CDS
TGTGGCAAACGAGTGGCGGA+TGG 0.498373 2_1:-66337604 Msa0218860:CDS
GATTCCCATTGTGAGCAATC+AGG 0.502650 2_1:-66336294 Msa0218860:intron
GAGTAACGGAAACGATTCAT+TGG 0.507063 2_1:-66339325 Msa0218860:CDS
TCTACCTGATTGCTCACAAT+GGG 0.509738 2_1:+66336290 None:intergenic
ATCCCATATAAATCTTCAGC+TGG 0.513287 2_1:+66337084 None:intergenic
TTTCATATGTTACTTCATAC+CGG 0.515004 2_1:-66335158 Msa0218860:three_prime_UTR
CTTGTCATCTTAACTGGTGG+TGG 0.516768 2_1:+66336821 None:intergenic
TGGCAGACAAGTGGTGGTTG+GGG 0.516858 2_1:-66339276 Msa0218860:CDS
ATCCCTCTCAAAATACAAAA+GGG 0.521470 2_1:-66335903 Msa0218860:intron
TAATGTGTCAAGGAAGAGAA+TGG 0.530921 2_1:-66336777 Msa0218860:CDS
TATATCAGCCATATCGAAAG+TGG 0.533886 2_1:+66337520 None:intergenic
ACCATTGATCCTGCTACAGC+AGG 0.539745 2_1:+66335474 None:intergenic
GGATGTTTATGTTGGTGTCA+AGG 0.543246 2_1:+66335954 None:intergenic
TTTGATGCAGTCTCACTAAG+TGG 0.545643 2_1:-66336847 Msa0218860:intron
AGGATTCATTGGATATAACT+CGG 0.549335 2_1:-66337640 Msa0218860:CDS
AGAAGATGTAAACAGCATAA+GGG 0.550057 2_1:-66335382 Msa0218860:CDS
TGGCAGATGGTGGATGCTTG+GGG 0.552987 2_1:-66335725 Msa0218860:intron
AGCAAAAGGGATGTTTATGT+TGG 0.553357 2_1:+66335946 None:intergenic
TCAATGGTTGGTGTAAGACT+TGG 0.555070 2_1:-66335459 Msa0218860:CDS
GCCTGCTGTAGCAGGATCAA+TGG 0.555540 2_1:-66335475 Msa0218860:CDS
CGGATGGGGCAGAATTGATA+GGG 0.555760 2_1:-66337588 Msa0218860:CDS
CATGTCGAAGGTAGATAAGC+CGG 0.559207 2_1:+66339203 None:intergenic
CGGCTTATCTACCTTCGACA+TGG 0.566100 2_1:-66339202 Msa0218860:CDS
AAACACCTCACAGACTTGAA+AGG 0.575581 2_1:-66336467 Msa0218860:CDS
GGATTCATTGGATATAACTC+GGG 0.575840 2_1:-66337639 Msa0218860:CDS
GAGACAACATTAATGTGTCA+AGG 0.581488 2_1:-66336787 Msa0218860:CDS
GCTGTAGCAGGATCAATGGT+TGG 0.583139 2_1:-66335471 Msa0218860:CDS
TTGATGCAGTCTCACTAAGT+GGG 0.585207 2_1:-66336846 Msa0218860:intron
ATGCAGGTATGGGACAGTAA+TGG 0.585251 2_1:-66335999 Msa0218860:intron
AACAGCATAAGGGAAGCAGC+AGG 0.585347 2_1:-66335372 Msa0218860:CDS
CTCACAGACTTGAAAGGAGA+AGG 0.587621 2_1:-66336461 Msa0218860:intron
ATATACTTCACAGCAACAGT+TGG 0.588134 2_1:+66335632 None:intergenic
GTCAAGGAAGAGAATGGACG+TGG 0.589441 2_1:-66336771 Msa0218860:CDS
ATACCGGAGCATAGCTTCAA+CGG 0.594485 2_1:+66339233 None:intergenic
GGGCAGAATTGATAGGGATG+AGG 0.595138 2_1:-66337582 Msa0218860:CDS
TAATTGCAGGTCCAGCAAAA+GGG 0.596248 2_1:+66335933 None:intergenic
ATAAGGGAAGCAGCAGGGAA+AGG 0.597100 2_1:-66335366 Msa0218860:CDS
GTCTACCTGATTGCTCACAA+TGG 0.599622 2_1:+66336289 None:intergenic
AAGCAAGTAGCTACTAAGCA+TGG 0.601273 2_1:-66335665 Msa0218860:CDS
TTGATTCGAATTCGATGCAG+TGG 0.601417 2_1:-66339402 Msa0218860:CDS
TCAAACAGAACACCAACAAG+AGG 0.601952 2_1:-66337752 Msa0218860:CDS
TGAAAGTGGAGAATAGGTTG+TGG 0.603049 2_1:+66339484 None:intergenic
ATAAGCCGGAATCAGCATAC+CGG 0.610129 2_1:+66339217 None:intergenic
CAGATGGTGGATGCTTGGGG+AGG 0.612252 2_1:-66335722 Msa0218860:CDS
GTAGAGTTCTTAATGGAATG+TGG 0.613884 2_1:-66339296 Msa0218860:CDS
AATGCGCCGATTATCCTCCT+GGG 0.616469 2_1:+66337679 None:intergenic
CATTGTGGTCAGTAATGGGA+AGG 0.617606 2_1:-66337660 Msa0218860:CDS
TGGGTAGTCACACACTGACA+TGG 0.621295 2_1:+66337698 None:intergenic
ACGCCGTTGAAGCTATGCTC+CGG 0.621896 2_1:-66339236 Msa0218860:CDS
GGAGGATAATCGGCGCATTG+TGG 0.623021 2_1:-66337675 Msa0218860:CDS
GTGACTGTGGAGATGAGTAC+AGG 0.625022 2_1:-66335320 Msa0218860:CDS
GCTTGAAGATACCACTGCCA+TGG 0.626100 2_1:+66339506 None:intergenic
CTTCTCCTTTCAAGTCTGTG+AGG 0.630876 2_1:+66336462 None:intergenic
ATGGAACTGAAGCATATCCA+AGG 0.631653 2_1:+66336745 None:intergenic
CTGTTGGTTCTCTGTGAGTG+GGG 0.634903 2_1:+66339432 None:intergenic
TCAATCGAGTTCGTCGTGAG+CGG 0.637046 2_1:-66337056 Msa0218860:CDS
CTTAAAGTGATTGGTGACTG+TGG 0.643254 2_1:-66335333 Msa0218860:CDS
GGAAGCAGCAGGGAAAGGCA+AGG 0.645795 2_1:-66335361 Msa0218860:CDS
GGCAGACAAGTGGTGGTTGG+GGG 0.649705 2_1:-66339275 Msa0218860:CDS
ACAGCATAAGGGAAGCAGCA+GGG 0.652098 2_1:-66335371 Msa0218860:CDS
CAGCGAGTGAAACTGAGTAA+CGG 0.654769 2_1:-66339339 Msa0218860:CDS
CTACTTGTCATCTTAACTGG+TGG 0.658791 2_1:+66336818 None:intergenic
GGAATGTGGCAAACGAGTGG+CGG 0.659714 2_1:-66337608 Msa0218860:CDS
TGTGAAGTATATACTAGACC+AGG 0.663396 2_1:-66335621 Msa0218860:intron
ATGTCAGTGTGTGACTACCC+AGG 0.665991 2_1:-66337696 Msa0218860:CDS
ACAGTGATCAGCCATGTCGA+AGG 0.668855 2_1:+66339191 None:intergenic
CTCGGGTTGTGAATGGAATG+TGG 0.682270 2_1:-66337622 Msa0218860:CDS
GGAATGTGGCAGACAAGTGG+TGG 0.686815 2_1:-66339282 Msa0218860:CDS
AATGGAATGTGGCAAACGAG+TGG 0.701010 2_1:-66337611 Msa0218860:CDS
AATGGAATGTGGCAGACAAG+TGG 0.706632 2_1:-66339285 Msa0218860:CDS
AGGTATGGGACAGTAATGGG+TGG 0.729235 2_1:-66335995 Msa0218860:CDS
TCAGTGTGTGACTACCCAGG+AGG 0.784654 2_1:-66337693 Msa0218860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTGTTACAAAAA+TGG - chr2_1:66335785-66335804 Msa0218860:intron 10.0%
!!! TTTTTTTTTGTTACAAAAAT+GGG - chr2_1:66335786-66335805 Msa0218860:intron 10.0%
!!! AACTGTTTTTTTTTTTTTTT+TGG - chr2_1:66336161-66336180 Msa0218860:CDS 10.0%
!!! ACTGTTTTTTTTTTTTTTTT+GGG - chr2_1:66336162-66336181 Msa0218860:CDS 10.0%
!!! AACTTTTAAAGAATAAAATA+TGG + chr2_1:66336483-66336502 None:intergenic 10.0%
!! TATATTTCATTTCATATATA+TGG - chr2_1:66336666-66336685 Msa0218860:intron 10.0%
!!! TTTTTTTTGTTACAAAAATG+GGG - chr2_1:66335787-66335806 Msa0218860:intron 15.0%
!!! AGTCAAATTCTTAAATTTTA+TGG - chr2_1:66336314-66336333 Msa0218860:CDS 15.0%
!!! AGCAATTTGATTTTTATTTT+TGG - chr2_1:66336612-66336631 Msa0218860:intron 15.0%
!!! AAAAAAAGTCAAATCTTTTT+GGG + chr2_1:66337211-66337230 None:intergenic 15.0%
!! TGAAATAATTTCTTAAATGA+GGG + chr2_1:66338544-66338563 None:intergenic 15.0%
!! ATGAAATAATTTCTTAAATG+AGG + chr2_1:66338545-66338564 None:intergenic 15.0%
!! AAAAAACAAAAGAAACAAAA+AGG - chr2_1:66339507-66339526 Msa0218860:CDS 15.0%
!!! AAACTTTTTTGTTTTTTGAG+AGG - chr2_1:66335996-66336015 Msa0218860:CDS 20.0%
!!! ATTTTTTGTGTCCAAAATTT+AGG - chr2_1:66336019-66336038 Msa0218860:intron 20.0%
!! ACTTATAAAACCAACATATA+GGG + chr2_1:66336087-66336106 None:intergenic 20.0%
!! AACTTATAAAACCAACATAT+AGG + chr2_1:66336088-66336107 None:intergenic 20.0%
!!! TGAATTTTGTTAAACTGTTT+GGG + chr2_1:66336225-66336244 None:intergenic 20.0%
!! TTAGCAAAACTAATTCAAAA+TGG + chr2_1:66336444-66336463 None:intergenic 20.0%
!!! ATTTTGAATTAGTTTTGCTA+AGG - chr2_1:66336443-66336462 Msa0218860:intron 20.0%
!! ATGAAAAAATCAAAACAGAA+CGG + chr2_1:66336575-66336594 None:intergenic 20.0%
!! ATATATATGGAAAATAAGAG+TGG - chr2_1:66336679-66336698 Msa0218860:intron 20.0%
!!! CAAAAAAAGTCAAATCTTTT+TGG + chr2_1:66337212-66337231 None:intergenic 20.0%
!!! CAAAAAGATTTGACTTTTTT+TGG - chr2_1:66337210-66337229 Msa0218860:intron 20.0%
!! ATGGATACAATTAAGTTAAA+TGG + chr2_1:66337357-66337376 None:intergenic 20.0%
!! GTTAATAAAATGATCATAGA+AGG - chr2_1:66337747-66337766 Msa0218860:CDS 20.0%
!!! AAGAATAATTTGTAATCTCT+CGG + chr2_1:66338317-66338336 None:intergenic 20.0%
!! ATCTCACATTGATATTAAAT+TGG - chr2_1:66339092-66339111 Msa0218860:intron 20.0%
!!! TATTTGTTTGATTTTGGTTA+TGG - chr2_1:66339130-66339149 Msa0218860:intron 20.0%
!! AAGATGAAAACATAAAAAGA+AGG - chr2_1:66339407-66339426 Msa0218860:CDS 20.0%
!! AGATGAAAACATAAAAAGAA+GGG - chr2_1:66339408-66339427 Msa0218860:CDS 20.0%
!!! GTTTCTTTTGTTTTTTAAAC+CGG + chr2_1:66339503-66339522 None:intergenic 20.0%
!!! GAAATTGGAAATGTTTTAGT+TGG + chr2_1:66335066-66335085 None:intergenic 25.0%
! GAAATATGTAGAGTTCTTAA+TGG - chr2_1:66335336-66335355 Msa0218860:CDS 25.0%
! TCATCAAAGAGAAAAATCTA+AGG + chr2_1:66335550-66335569 None:intergenic 25.0%
! TGATGACTGAAAATTCAATT+TGG - chr2_1:66335614-66335633 Msa0218860:intron 25.0%
!! ATCCTTTGAATCCTAAATTT+TGG + chr2_1:66336033-66336052 None:intergenic 25.0%
!! TTTTTGTATACCCTATATGT+TGG - chr2_1:66336074-66336093 Msa0218860:intron 25.0%
!!! TTTTTTTTTGGGTACAAAAG+AGG - chr2_1:66336173-66336192 Msa0218860:CDS 25.0%
!!! TTTTTTTTGGGTACAAAAGA+GGG - chr2_1:66336174-66336193 Msa0218860:CDS 25.0%
!! CTGAATTTTGTTAAACTGTT+TGG + chr2_1:66336226-66336245 None:intergenic 25.0%
! CAAACAGTTTAACAAAATTC+AGG - chr2_1:66336224-66336243 Msa0218860:intron 25.0%
!!! CTTTAAAGTAAAGAGTCTAA+TGG + chr2_1:66336293-66336312 None:intergenic 25.0%
! ATTTGACAGCAAATATTATG+TGG - chr2_1:66336538-66336557 Msa0218860:intron 25.0%
! CCATATATTTATTCTTTACG+TGG + chr2_1:66336707-66336726 None:intergenic 25.0%
! CCACGTAAAGAATAAATATA+TGG - chr2_1:66336704-66336723 Msa0218860:intron 25.0%
! CGTAAAGAATAAATATATGG+TGG - chr2_1:66336707-66336726 Msa0218860:intron 25.0%
!!! TCTCATTTGTTGTGTTTTTT+TGG - chr2_1:66337519-66337538 Msa0218860:CDS 25.0%
! ATTTATCTCAGTAACATACT+AGG + chr2_1:66338008-66338027 None:intergenic 25.0%
!!! CCTAAATTTGTTACAGATAA+AGG + chr2_1:66338116-66338135 None:intergenic 25.0%
! CCTTTATCTGTAACAAATTT+AGG - chr2_1:66338113-66338132 Msa0218860:intron 25.0%
! TTATCTGTAACAAATTTAGG+TGG - chr2_1:66338116-66338135 Msa0218860:intron 25.0%
! TATCTGTAACAAATTTAGGT+GGG - chr2_1:66338117-66338136 Msa0218860:intron 25.0%
! AGTTTATATAAACTTACTGC+TGG - chr2_1:66338399-66338418 Msa0218860:intron 25.0%
! TAACTTCAGATAGTTAATGA+TGG + chr2_1:66338775-66338794 None:intergenic 25.0%
! AATCAAACAAATATCCAACA+GGG + chr2_1:66339123-66339142 None:intergenic 25.0%
! AAATCAAACAAATATCCAAC+AGG + chr2_1:66339124-66339143 None:intergenic 25.0%
!!! GTTGGATATTTGTTTGATTT+TGG - chr2_1:66339124-66339143 Msa0218860:intron 25.0%
!! TTTCATATGTTACTTCATAC+CGG - chr2_1:66339481-66339500 Msa0218860:CDS 25.0%
CCAAATTGGAGAATTGAAAT+TGG + chr2_1:66335081-66335100 None:intergenic 30.0%
CCAATTTCAATTCTCCAATT+TGG - chr2_1:66335078-66335097 Msa0218860:three_prime_UTR 30.0%
!! TTTTTGAGAAGAAGAAGAAG+AGG + chr2_1:66335112-66335131 None:intergenic 30.0%
TTCTTCTTCTCAAAAATCCA+TGG - chr2_1:66335116-66335135 Msa0218860:three_prime_UTR 30.0%
ATGAATACAGAGAAAATGAG+TGG + chr2_1:66335486-66335505 None:intergenic 30.0%
CCAGAGATAAATTAGTTCAT+CGG + chr2_1:66335673-66335692 None:intergenic 30.0%
TTTGTTACAAAAATGGGGAA+TGG - chr2_1:66335792-66335811 Msa0218860:intron 30.0%
GGAAAAATAAATTCGCTAGA+AGG - chr2_1:66335813-66335832 Msa0218860:intron 30.0%
AAAATAAATTCGCTAGAAGG+AGG - chr2_1:66335816-66335835 Msa0218860:intron 30.0%
AAATAAATTCGCTAGAAGGA+GGG - chr2_1:66335817-66335836 Msa0218860:intron 30.0%
ATAACTAAAAACAGAGCAGT+TGG + chr2_1:66335959-66335978 None:intergenic 30.0%
! GTCCAAAATTTAGGATTCAA+AGG - chr2_1:66336028-66336047 Msa0218860:intron 30.0%
!!! TTTTTTTGGGTACAAAAGAG+GGG - chr2_1:66336175-66336194 Msa0218860:CDS 30.0%
AGGATTCATTGGATATAACT+CGG - chr2_1:66336999-66337018 Msa0218860:intron 30.0%
ACATGGACTCAAAAGAAATT+AGG + chr2_1:66337178-66337197 None:intergenic 30.0%
!! TCAAATCTTTTTGGGAATTG+TGG + chr2_1:66337203-66337222 None:intergenic 30.0%
TCTAAACACTTCTACTCTAA+TGG + chr2_1:66337380-66337399 None:intergenic 30.0%
!! AATTTTTGGAAAAGGTCAGA+GGG - chr2_1:66337613-66337632 Msa0218860:CDS 30.0%
GACTGCATCAAATAATACAA+TGG + chr2_1:66337784-66337803 None:intergenic 30.0%
! TTTTACAGTTCCTCATAACA+CGG - chr2_1:66337963-66337982 Msa0218860:intron 30.0%
ATGATAATTCTGATTCTCTG+AGG - chr2_1:66338067-66338086 Msa0218860:intron 30.0%
GTTTGCTTAAATCAAGAAAC+AGG + chr2_1:66338236-66338255 None:intergenic 30.0%
!!! GTTTTGATTTTACCTGTACA+AGG + chr2_1:66338271-66338290 None:intergenic 30.0%
! GAAGAGAAATTAAAGCACTT+GGG + chr2_1:66338375-66338394 None:intergenic 30.0%
! AGAAGAGAAATTAAAGCACT+TGG + chr2_1:66338376-66338395 None:intergenic 30.0%
! TATAAAGTATCTTCACTGTC+AGG - chr2_1:66338433-66338452 Msa0218860:intron 30.0%
ATCCCTCTCAAAATACAAAA+GGG - chr2_1:66338736-66338755 Msa0218860:intron 30.0%
!! TACCCTTTTGTATTTTGAGA+GGG + chr2_1:66338741-66338760 None:intergenic 30.0%
!! TTACCCTTTTGTATTTTGAG+AGG + chr2_1:66338742-66338761 None:intergenic 30.0%
AAGAAGATGTAAACAGCATA+AGG - chr2_1:66339256-66339275 Msa0218860:CDS 30.0%
AGAAGATGTAAACAGCATAA+GGG - chr2_1:66339257-66339276 Msa0218860:CDS 30.0%
AAGGATCTTCTTAAAGTGAT+TGG - chr2_1:66339297-66339316 Msa0218860:CDS 30.0%
! GTGATTGTTTTCACTTATAC+AGG - chr2_1:66339377-66339396 Msa0218860:CDS 30.0%
! TTTTCACTTATACAGGACAA+GGG - chr2_1:66339384-66339403 Msa0218860:CDS 30.0%
AAGAGGATAACGAACCAAAT+TGG + chr2_1:66335095-66335114 None:intergenic 35.0%
GTAGAGTTCTTAATGGAATG+TGG - chr2_1:66335343-66335362 Msa0218860:CDS 35.0%
!!! GATTTTTCTCTTTGATGACG+TGG - chr2_1:66335552-66335571 Msa0218860:intron 35.0%
! ATTTTCTTGCCCAACTTAGT+TGG - chr2_1:66335645-66335664 Msa0218860:CDS 35.0%
! TTTTCTTGCCCAACTTAGTT+GGG - chr2_1:66335646-66335665 Msa0218860:CDS 35.0%
CCGATGAACTAATTTATCTC+TGG - chr2_1:66335670-66335689 Msa0218860:CDS 35.0%
AATGTCAAACCAGTTTGAGT+CGG - chr2_1:66335700-66335719 Msa0218860:CDS 35.0%
CTAGTTTAGTCACTCACTAT+AGG - chr2_1:66335755-66335774 Msa0218860:intron 35.0%
TTTAGTCACTCACTATAGGT+TGG - chr2_1:66335759-66335778 Msa0218860:intron 35.0%
AATAAATTCGCTAGAAGGAG+GGG - chr2_1:66335818-66335837 Msa0218860:intron 35.0%
CAACTTGAGAAGTTGCATAA+AGG - chr2_1:66336753-66336772 Msa0218860:CDS 35.0%
GGATTCATTGGATATAACTC+GGG - chr2_1:66337000-66337019 Msa0218860:intron 35.0%
TGGATTAACCACTTTCGATA+TGG - chr2_1:66337111-66337130 Msa0218860:intron 35.0%
TATATCAGCCATATCGAAAG+TGG + chr2_1:66337122-66337141 None:intergenic 35.0%
!! TTTTGGGAATTGTGGTTACA+TGG + chr2_1:66337195-66337214 None:intergenic 35.0%
ACATGAGCCTAATTCTTACA+GGG - chr2_1:66337271-66337290 Msa0218860:intron 35.0%
AAAACCACCCTGTAAGAATT+AGG + chr2_1:66337281-66337300 None:intergenic 35.0%
!!! AGGTTTTGTCGAGTTGATTT+AGG - chr2_1:66337304-66337323 Msa0218860:intron 35.0%
AACACTTCTACTCTAATGGA+TGG + chr2_1:66337376-66337395 None:intergenic 35.0%
!!! TGTTTTTTTGGCTTTGCAGA+TGG - chr2_1:66337531-66337550 Msa0218860:CDS 35.0%
!!! GTTTTTTTGGCTTTGCAGAT+GGG - chr2_1:66337532-66337551 Msa0218860:CDS 35.0%
ATCCCATATAAATCTTCAGC+TGG + chr2_1:66337558-66337577 None:intergenic 35.0%
! ACCTTTTCCAAAAATTCTGG+TGG + chr2_1:66337609-66337628 None:intergenic 35.0%
! CTGACCTTTTCCAAAAATTC+TGG + chr2_1:66337612-66337631 None:intergenic 35.0%
!! GAATTTTTGGAAAAGGTCAG+AGG - chr2_1:66337612-66337631 Msa0218860:CDS 35.0%
AAGCTACTTGTCATCTTAAC+TGG + chr2_1:66337827-66337846 None:intergenic 35.0%
GAGACAACATTAATGTGTCA+AGG - chr2_1:66337852-66337871 Msa0218860:CDS 35.0%
TAATGTGTCAAGGAAGAGAA+TGG - chr2_1:66337862-66337881 Msa0218860:intron 35.0%
GGGGAGAATTTAAATACCAA+TGG + chr2_1:66337916-66337935 None:intergenic 35.0%
ATACACCAAATAACAAGAGG+GGG + chr2_1:66337935-66337954 None:intergenic 35.0%
CATACACCAAATAACAAGAG+GGG + chr2_1:66337936-66337955 None:intergenic 35.0%
GCATACACCAAATAACAAGA+GGG + chr2_1:66337937-66337956 None:intergenic 35.0%
AGCATACACCAAATAACAAG+AGG + chr2_1:66337938-66337957 None:intergenic 35.0%
AGGTGGGATTATTCAAATTC+AGG - chr2_1:66338133-66338152 Msa0218860:intron 35.0%
GGAACTTAGATGAGTTAATC+AGG + chr2_1:66338215-66338234 None:intergenic 35.0%
! TGTTTCTGTTAACCTTGTAC+AGG - chr2_1:66338256-66338275 Msa0218860:intron 35.0%
AGCAAAAGGGATGTTTATGT+TGG + chr2_1:66338696-66338715 None:intergenic 35.0%
! AACATAAACATCCCTTTTGC+TGG - chr2_1:66338695-66338714 Msa0218860:intron 35.0%
!! CTTTTGTATTTTGAGAGGGA+TGG + chr2_1:66338737-66338756 None:intergenic 35.0%
CATCCCTCTCAAAATACAAA+AGG - chr2_1:66338735-66338754 Msa0218860:intron 35.0%
GAGGATGAGATTTCATTTCT+TGG - chr2_1:66338839-66338858 Msa0218860:intron 35.0%
ATATACTTCACAGCAACAGT+TGG + chr2_1:66339010-66339029 None:intergenic 35.0%
TGTGAAGTATATACTAGACC+AGG - chr2_1:66339018-66339037 Msa0218860:intron 35.0%
!! AGTTGATTTGCTTTCAATGC+AGG - chr2_1:66339044-66339063 Msa0218860:intron 35.0%
! GTTTTCACTTATACAGGACA+AGG - chr2_1:66339383-66339402 Msa0218860:CDS 35.0%
CCTTCTACTGAGACAAAATT+GGG + chr2_1:66339446-66339465 None:intergenic 35.0%
TCCTTCTACTGAGACAAAAT+TGG + chr2_1:66339447-66339466 None:intergenic 35.0%
TTCTCAAAAATCCATGGCAG+TGG - chr2_1:66335122-66335141 Msa0218860:three_prime_UTR 40.0%
TGAAAGTGGAGAATAGGTTG+TGG + chr2_1:66335158-66335177 None:intergenic 40.0%
! TTGATTCGAATTCGATGCAG+TGG - chr2_1:66335237-66335256 Msa0218860:three_prime_UTR 40.0%
! GAGTAACGGAAACGATTCAT+TGG - chr2_1:66335314-66335333 Msa0218860:CDS 40.0%
! ACAGAGAAAATGAGTGGACT+AGG + chr2_1:66335480-66335499 None:intergenic 40.0%
! CATTCTGTTCTATGATGACG+TGG - chr2_1:66335513-66335532 Msa0218860:intron 40.0%
ATGTCAAACCAGTTTGAGTC+GGG - chr2_1:66335701-66335720 Msa0218860:CDS 40.0%
AATTTAGTCCCGACTCAAAC+TGG + chr2_1:66335712-66335731 None:intergenic 40.0%
AGTTTGAGTCGGGACTAAAT+TGG - chr2_1:66335711-66335730 Msa0218860:CDS 40.0%
GTTTGAGTCGGGACTAAATT+GGG - chr2_1:66335712-66335731 Msa0218860:CDS 40.0%
ATCATGCGAACAAAACTCCA+GGG + chr2_1:66336354-66336373 None:intergenic 40.0%
CAACAGCAGAAACTCTTGAA+AGG + chr2_1:66336784-66336803 None:intergenic 40.0%
TCAAACAGAACACCAACAAG+AGG - chr2_1:66336887-66336906 Msa0218860:intron 40.0%
CTTGTTGCAATTCCTCTTGT+TGG + chr2_1:66336902-66336921 None:intergenic 40.0%
! CAGTAATGGGAAGGATTCAT+TGG - chr2_1:66336988-66337007 Msa0218860:intron 40.0%
! GATATAACTCGGGTTGTGAA+TGG - chr2_1:66337010-66337029 Msa0218860:intron 40.0%
ATGCTTAAATACGCTGATGC+TGG - chr2_1:66337091-66337110 Msa0218860:CDS 40.0%
GACATGAGCCTAATTCTTAC+AGG - chr2_1:66337270-66337289 Msa0218860:intron 40.0%
!!! TCTTACAGGGTGGTTTTATG+AGG - chr2_1:66337284-66337303 Msa0218860:intron 40.0%
GGCCAGCTGAAGATTTATAT+GGG - chr2_1:66337553-66337572 Msa0218860:CDS 40.0%
!! GCCACCAGAATTTTTGGAAA+AGG - chr2_1:66337605-66337624 Msa0218860:CDS 40.0%
TTTGATGCAGTCTCACTAAG+TGG - chr2_1:66337792-66337811 Msa0218860:CDS 40.0%
TTGATGCAGTCTCACTAAGT+GGG - chr2_1:66337793-66337812 Msa0218860:CDS 40.0%
CTACTTGTCATCTTAACTGG+TGG + chr2_1:66337824-66337843 None:intergenic 40.0%
ATGGAACTGAAGCATATCCA+AGG + chr2_1:66337897-66337916 None:intergenic 40.0%
TGGATATGCTTCAGTTCCAT+TGG - chr2_1:66337897-66337916 Msa0218860:intron 40.0%
!! ATTCTCCCCCTCTTGTTATT+TGG - chr2_1:66337927-66337946 Msa0218860:intron 40.0%
!!! TGAGGTGTTTTAGTGCATCA+AGG + chr2_1:66338162-66338181 None:intergenic 40.0%
AAACACCTCACAGACTTGAA+AGG - chr2_1:66338172-66338191 Msa0218860:intron 40.0%
TCTACCTGATTGCTCACAAT+GGG + chr2_1:66338352-66338371 None:intergenic 40.0%
!!! AAGCTCTGCCATTTTCTGTT+GGG + chr2_1:66338486-66338505 None:intergenic 40.0%
!!! AAAGCTCTGCCATTTTCTGT+TGG + chr2_1:66338487-66338506 None:intergenic 40.0%
TCACAATAGGGGGGAAATTT+CGG + chr2_1:66338621-66338640 None:intergenic 40.0%
!! GGATGTTTATGTTGGTGTCA+AGG + chr2_1:66338688-66338707 None:intergenic 40.0%
TAATTGCAGGTCCAGCAAAA+GGG + chr2_1:66338709-66338728 None:intergenic 40.0%
TTAATTGCAGGTCCAGCAAA+AGG + chr2_1:66338710-66338729 None:intergenic 40.0%
TAGTGTTCTTAAGCGGGAAA+AGG + chr2_1:66338818-66338837 None:intergenic 40.0%
! TTTTCCCGCTTAAGAACACT+AGG - chr2_1:66338817-66338836 Msa0218860:intron 40.0%
ATCCTCCTAGTGTTCTTAAG+CGG + chr2_1:66338825-66338844 None:intergenic 40.0%
TTGCTGTACTTTGCATCACA+TGG - chr2_1:66338894-66338913 Msa0218860:intron 40.0%
TAAGAGTTCGAAGAAGTCCT+TGG + chr2_1:66338955-66338974 None:intergenic 40.0%
AAGCAAGTAGCTACTAAGCA+TGG - chr2_1:66338974-66338993 Msa0218860:intron 40.0%
GAAAGCAAATCAACTTCACC+TGG + chr2_1:66339039-66339058 None:intergenic 40.0%
TTAAATTGGACAAGCCCTGT+TGG - chr2_1:66339106-66339125 Msa0218860:intron 40.0%
! TCAATGGTTGGTGTAAGACT+TGG - chr2_1:66339180-66339199 Msa0218860:intron 40.0%
! CTTAAAGTGATTGGTGACTG+TGG - chr2_1:66339306-66339325 Msa0218860:CDS 40.0%
! CCCAATTTTGTCTCAGTAGA+AGG - chr2_1:66339443-66339462 Msa0218860:CDS 40.0%
AGCGAGTGAAAGTGGAGAAT+AGG + chr2_1:66335164-66335183 None:intergenic 45.0%
GTTGTTGAAGCGAGTGAAAG+TGG + chr2_1:66335172-66335191 None:intergenic 45.0%
TCGAATCAATCTTGCGCTGT+TGG + chr2_1:66335226-66335245 None:intergenic 45.0%
CAGCGAGTGAAACTGAGTAA+CGG - chr2_1:66335300-66335319 Msa0218860:exon 45.0%
AATGGAATGTGGCAGACAAG+TGG - chr2_1:66335354-66335373 Msa0218860:CDS 45.0%
ATACCGGAGCATAGCTTCAA+CGG + chr2_1:66335409-66335428 None:intergenic 45.0%
ATAAGCCGGAATCAGCATAC+CGG + chr2_1:66335425-66335444 None:intergenic 45.0%
CATGTCGAAGGTAGATAAGC+CGG + chr2_1:66335439-66335458 None:intergenic 45.0%
! TCTGTTCTATGATGACGTGG+AGG - chr2_1:66335516-66335535 Msa0218860:intron 45.0%
TCATCGGACCCAACTAAGTT+GGG + chr2_1:66335657-66335676 None:intergenic 45.0%
TTCATCGGACCCAACTAAGT+TGG + chr2_1:66335658-66335677 None:intergenic 45.0%
ACAAGCTGGAATAGCTCAGT+TGG + chr2_1:66335884-66335903 None:intergenic 45.0%
CCAAACTAGAGTGTACAAGC+TGG + chr2_1:66335898-66335917 None:intergenic 45.0%
CCAGCTTGTACACTCTAGTT+TGG - chr2_1:66335895-66335914 Msa0218860:intron 45.0%
GATCATGCGAACAAAACTCC+AGG + chr2_1:66336355-66336374 None:intergenic 45.0%
TGACTACCCAGGAGGATAAT+CGG - chr2_1:66336954-66336973 Msa0218860:intron 45.0%
! CATTGTGGTCAGTAATGGGA+AGG - chr2_1:66336979-66336998 Msa0218860:intron 45.0%
AATGGAATGTGGCAAACGAG+TGG - chr2_1:66337028-66337047 Msa0218860:CDS 45.0%
AGGTGCAAGTAGAAGCAACA+AGG + chr2_1:66337158-66337177 None:intergenic 45.0%
TGAGCCTAATTCTTACAGGG+TGG - chr2_1:66337274-66337293 Msa0218860:intron 45.0%
GGCAGCAGAGTCTTAGAATT+CGG + chr2_1:66337336-66337355 None:intergenic 45.0%
GAGACTGTTCTCATTTGAGC+AGG - chr2_1:66337398-66337417 Msa0218860:intron 45.0%
GGGCCAGCTGAAGATTTATA+TGG - chr2_1:66337552-66337571 Msa0218860:CDS 45.0%
CTTGTCATCTTAACTGGTGG+TGG + chr2_1:66337821-66337840 None:intergenic 45.0%
CGATGAATGACCGTGTTATG+AGG + chr2_1:66337976-66337995 None:intergenic 45.0%
! CTTCTCCTTTCAAGTCTGTG+AGG + chr2_1:66338180-66338199 None:intergenic 45.0%
CTCACAGACTTGAAAGGAGA+AGG - chr2_1:66338178-66338197 Msa0218860:intron 45.0%
GATTCCCATTGTGAGCAATC+AGG - chr2_1:66338345-66338364 Msa0218860:intron 45.0%
GTCTACCTGATTGCTCACAA+TGG + chr2_1:66338353-66338372 None:intergenic 45.0%
TATGCGTCCCCAACAGAAAA+TGG - chr2_1:66338475-66338494 Msa0218860:intron 45.0%
!!! AGCTCTGCCATTTTCTGTTG+GGG + chr2_1:66338485-66338504 None:intergenic 45.0%
CACAATAGGGGGGAAATTTC+GGG + chr2_1:66338620-66338639 None:intergenic 45.0%
ATACCTGCATCACAATAGGG+GGG + chr2_1:66338630-66338649 None:intergenic 45.0%
CATACCTGCATCACAATAGG+GGG + chr2_1:66338631-66338650 None:intergenic 45.0%
CCATACCTGCATCACAATAG+GGG + chr2_1:66338632-66338651 None:intergenic 45.0%
CCCATACCTGCATCACAATA+GGG + chr2_1:66338633-66338652 None:intergenic 45.0%
CCCTATTGTGATGCAGGTAT+GGG - chr2_1:66338630-66338649 Msa0218860:intron 45.0%
TCCCATACCTGCATCACAAT+AGG + chr2_1:66338634-66338653 None:intergenic 45.0%
ATGCAGGTATGGGACAGTAA+TGG - chr2_1:66338640-66338659 Msa0218860:intron 45.0%
TGCAGGTATGGGACAGTAAT+GGG - chr2_1:66338641-66338660 Msa0218860:intron 45.0%
! AGGGATGGAGTGTTAATTGC+AGG + chr2_1:66338722-66338741 None:intergenic 45.0%
TCCTCCTAGTGTTCTTAAGC+GGG + chr2_1:66338824-66338843 None:intergenic 45.0%
ACTTTGCATCACATGGCAGA+TGG - chr2_1:66338901-66338920 Msa0218860:intron 45.0%
!! AATAACATAAAATAAATAAT+TGG + chr2_1:66336377-66336396 None:intergenic 5.0%
!!! TAAAAAATAACATTTTTTTA+GGG + chr2_1:66336412-66336431 None:intergenic 5.0%
!!! ATAAAAAATAACATTTTTTT+AGG + chr2_1:66336413-66336432 None:intergenic 5.0%
GCTTGAAGATACCACTGCCA+TGG + chr2_1:66335136-66335155 None:intergenic 50.0%
!! CTGTTGGTTCTCTGTGAGTG+GGG + chr2_1:66335210-66335229 None:intergenic 50.0%
!! GCTGTTGGTTCTCTGTGAGT+GGG + chr2_1:66335211-66335230 None:intergenic 50.0%
!! ATGCTCCGGTATGCTGATTC+CGG - chr2_1:66335417-66335436 Msa0218860:CDS 50.0%
CGGCTTATCTACCTTCGACA+TGG - chr2_1:66335437-66335456 Msa0218860:CDS 50.0%
ACAGTGATCAGCCATGTCGA+AGG + chr2_1:66335451-66335470 None:intergenic 50.0%
GTGGCTGTTAACCACAAGGT+CGG + chr2_1:66335852-66335871 None:intergenic 50.0%
! TCAAGTTGCCCTATCCTGTG+CGG + chr2_1:66336741-66336760 None:intergenic 50.0%
TGGGTAGTCACACACTGACA+TGG + chr2_1:66336944-66336963 None:intergenic 50.0%
ATGTCAGTGTGTGACTACCC+AGG - chr2_1:66336943-66336962 Msa0218860:intron 50.0%
!! AATGCGCCGATTATCCTCCT+GGG + chr2_1:66336963-66336982 None:intergenic 50.0%
GGCGCATTGTGGTCAGTAAT+GGG - chr2_1:66336975-66336994 Msa0218860:intron 50.0%
! CTCGGGTTGTGAATGGAATG+TGG - chr2_1:66337017-66337036 Msa0218860:intron 50.0%
CGGATGGGGCAGAATTGATA+GGG - chr2_1:66337051-66337070 Msa0218860:CDS 50.0%
GGGCAGAATTGATAGGGATG+AGG - chr2_1:66337057-66337076 Msa0218860:CDS 50.0%
TCAATCGAGTTCGTCGTGAG+CGG - chr2_1:66337583-66337602 Msa0218860:CDS 50.0%
! TGAGCGGCCACCAGAATTTT+TGG - chr2_1:66337599-66337618 Msa0218860:CDS 50.0%
GTCAAGGAAGAGAATGGACG+TGG - chr2_1:66337868-66337887 Msa0218860:intron 50.0%
GAGAATGGACGTGGAATCCT+TGG - chr2_1:66337877-66337896 Msa0218860:intron 50.0%
! GCAGAGCTTTGTCAGCTTAC+AGG - chr2_1:66338497-66338516 Msa0218860:intron 50.0%
TTTCCCCCCTATTGTGATGC+AGG - chr2_1:66338624-66338643 Msa0218860:intron 50.0%
CCCCTATTGTGATGCAGGTA+TGG - chr2_1:66338629-66338648 Msa0218860:intron 50.0%
! AGGTATGGGACAGTAATGGG+TGG - chr2_1:66338644-66338663 Msa0218860:intron 50.0%
TCCCGCTTAAGAACACTAGG+AGG - chr2_1:66338820-66338839 Msa0218860:intron 50.0%
TTGCATCACATGGCAGATGG+TGG - chr2_1:66338904-66338923 Msa0218860:intron 50.0%
!! ATGGCAGATGGTGGATGCTT+GGG - chr2_1:66338913-66338932 Msa0218860:intron 50.0%
ACCATTGATCCTGCTACAGC+AGG + chr2_1:66339168-66339187 None:intergenic 50.0%
GCTGTAGCAGGATCAATGGT+TGG - chr2_1:66339168-66339187 Msa0218860:intron 50.0%
AACAGCATAAGGGAAGCAGC+AGG - chr2_1:66339267-66339286 Msa0218860:CDS 50.0%
ACAGCATAAGGGAAGCAGCA+GGG - chr2_1:66339268-66339287 Msa0218860:CDS 50.0%
ATAAGGGAAGCAGCAGGGAA+AGG - chr2_1:66339273-66339292 Msa0218860:CDS 50.0%
GTGACTGTGGAGATGAGTAC+AGG - chr2_1:66339319-66339338 Msa0218860:CDS 50.0%
!! CGCTGTTGGTTCTCTGTGAG+TGG + chr2_1:66335212-66335231 None:intergenic 55.0%
GGAATGTGGCAGACAAGTGG+TGG - chr2_1:66335357-66335376 Msa0218860:CDS 55.0%
TGTGGCAGACAAGTGGTGGT+TGG - chr2_1:66335361-66335380 Msa0218860:CDS 55.0%
GTGGCAGACAAGTGGTGGTT+GGG - chr2_1:66335362-66335381 Msa0218860:CDS 55.0%
TGGCAGACAAGTGGTGGTTG+GGG - chr2_1:66335363-66335382 Msa0218860:CDS 55.0%
ACGCCGTTGAAGCTATGCTC+CGG - chr2_1:66335403-66335422 Msa0218860:CDS 55.0%
GCTGTTAACCACAAGGTCGG+AGG + chr2_1:66335849-66335868 None:intergenic 55.0%
GCGTGTGGCTGTTAACCACA+AGG + chr2_1:66335856-66335875 None:intergenic 55.0%
GCTCAGTTGGTTAGAGCGTG+TGG + chr2_1:66335871-66335890 None:intergenic 55.0%
TGGTGAGCACTTCTGTACCC+TGG - chr2_1:66336334-66336353 Msa0218860:CDS 55.0%
AGAGTAGCCCGCACAGGATA+GGG - chr2_1:66336730-66336749 Msa0218860:intron 55.0%
CAAGTTGCCCTATCCTGTGC+GGG + chr2_1:66336740-66336759 None:intergenic 55.0%
TCAGTGTGTGACTACCCAGG+AGG - chr2_1:66336946-66336965 Msa0218860:intron 55.0%
!! CAATGCGCCGATTATCCTCC+TGG + chr2_1:66336964-66336983 None:intergenic 55.0%
GGAGGATAATCGGCGCATTG+TGG - chr2_1:66336964-66336983 Msa0218860:intron 55.0%
CGGCGCATTGTGGTCAGTAA+TGG - chr2_1:66336974-66336993 Msa0218860:intron 55.0%
GGAATGTGGCAAACGAGTGG+CGG - chr2_1:66337031-66337050 Msa0218860:CDS 55.0%
GCGGATGGGGCAGAATTGAT+AGG - chr2_1:66337050-66337069 Msa0218860:CDS 55.0%
!! CATGGCAGATGGTGGATGCT+TGG - chr2_1:66338912-66338931 Msa0218860:intron 55.0%
!! TGGCAGATGGTGGATGCTTG+GGG - chr2_1:66338914-66338933 Msa0218860:intron 55.0%
! GGAGGATGGGGTTTGTTCCA+AGG - chr2_1:66338935-66338954 Msa0218860:intron 55.0%
GCCTGCTGTAGCAGGATCAA+TGG - chr2_1:66339164-66339183 Msa0218860:intron 55.0%
GGCAGACAAGTGGTGGTTGG+GGG - chr2_1:66335364-66335383 Msa0218860:CDS 60.0%
AGACAAGTGGTGGTTGGGGG+AGG - chr2_1:66335367-66335386 Msa0218860:CDS 60.0%
GGGTTGAACCTCCGACCTTG+TGG - chr2_1:66335838-66335857 Msa0218860:intron 60.0%
GAGAGTAGCCCGCACAGGAT+AGG - chr2_1:66336729-66336748 Msa0218860:intron 60.0%
! TGTGGCAAACGAGTGGCGGA+TGG - chr2_1:66337035-66337054 Msa0218860:CDS 60.0%
!! GTGGCAAACGAGTGGCGGAT+GGG - chr2_1:66337036-66337055 Msa0218860:CDS 60.0%
!! TGGCAAACGAGTGGCGGATG+GGG - chr2_1:66337037-66337056 Msa0218860:CDS 60.0%
!! CAGATGGTGGATGCTTGGGG+AGG - chr2_1:66338917-66338936 Msa0218860:intron 60.0%
! TGGTGGATGCTTGGGGAGGA+TGG - chr2_1:66338921-66338940 Msa0218860:intron 60.0%
GGTGGATGCTTGGGGAGGAT+GGG - chr2_1:66338922-66338941 Msa0218860:intron 60.0%
GTGGATGCTTGGGGAGGATG+GGG - chr2_1:66338923-66338942 Msa0218860:intron 60.0%
AACCTGCAGCCTGCTGTAGC+AGG - chr2_1:66339156-66339175 Msa0218860:intron 60.0%
ATCCTGCTACAGCAGGCTGC+AGG + chr2_1:66339161-66339180 None:intergenic 60.0%
GGAAGCAGCAGGGAAAGGCA+AGG - chr2_1:66339278-66339297 Msa0218860:CDS 60.0%
TGGTGGAGAGTAGCCCGCAC+AGG - chr2_1:66336724-66336743 Msa0218860:intron 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 66335054 66339607 66335054 ID=Msa0218860;Name=Msa0218860
chr2_1 mRNA 66335054 66339607 66335054 ID=Msa0218860-mRNA-1;Parent=Msa0218860;Name=Msa0218860-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.88|0.8|1|0.88|0.8|10|257|541
chr2_1 exon 66335054 66335496 66335054 ID=Msa0218860-mRNA-1:exon:18663;Parent=Msa0218860-mRNA-1
chr2_1 exon 66335622 66335741 66335622 ID=Msa0218860-mRNA-1:exon:18662;Parent=Msa0218860-mRNA-1
chr2_1 exon 66335904 66336015 66335904 ID=Msa0218860-mRNA-1:exon:18661;Parent=Msa0218860-mRNA-1
chr2_1 exon 66336127 66336206 66336127 ID=Msa0218860-mRNA-1:exon:18660;Parent=Msa0218860-mRNA-1
chr2_1 exon 66336295 66336383 66336295 ID=Msa0218860-mRNA-1:exon:18659;Parent=Msa0218860-mRNA-1
chr2_1 exon 66336462 66336526 66336462 ID=Msa0218860-mRNA-1:exon:18658;Parent=Msa0218860-mRNA-1
chr2_1 exon 66336743 66336859 66336743 ID=Msa0218860-mRNA-1:exon:18657;Parent=Msa0218860-mRNA-1
chr2_1 exon 66337027 66337111 66337027 ID=Msa0218860-mRNA-1:exon:18656;Parent=Msa0218860-mRNA-1
chr2_1 exon 66337519 66337871 66337519 ID=Msa0218860-mRNA-1:exon:18655;Parent=Msa0218860-mRNA-1
chr2_1 exon 66339189 66339607 66339189 ID=Msa0218860-mRNA-1:exon:18654;Parent=Msa0218860-mRNA-1
chr2_1 CDS 66339189 66339607 66339189 ID=Msa0218860-mRNA-1:cds;Parent=Msa0218860-mRNA-1
chr2_1 CDS 66337519 66337871 66337519 ID=Msa0218860-mRNA-1:cds;Parent=Msa0218860-mRNA-1
chr2_1 CDS 66337027 66337111 66337027 ID=Msa0218860-mRNA-1:cds;Parent=Msa0218860-mRNA-1
chr2_1 CDS 66336743 66336859 66336743 ID=Msa0218860-mRNA-1:cds;Parent=Msa0218860-mRNA-1
chr2_1 CDS 66336462 66336526 66336462 ID=Msa0218860-mRNA-1:cds;Parent=Msa0218860-mRNA-1
chr2_1 CDS 66336295 66336383 66336295 ID=Msa0218860-mRNA-1:cds;Parent=Msa0218860-mRNA-1
chr2_1 CDS 66336127 66336206 66336127 ID=Msa0218860-mRNA-1:cds;Parent=Msa0218860-mRNA-1
chr2_1 CDS 66335904 66336015 66335904 ID=Msa0218860-mRNA-1:cds;Parent=Msa0218860-mRNA-1
chr2_1 CDS 66335622 66335741 66335622 ID=Msa0218860-mRNA-1:cds;Parent=Msa0218860-mRNA-1
chr2_1 CDS 66335311 66335496 66335311 ID=Msa0218860-mRNA-1:cds;Parent=Msa0218860-mRNA-1
chr2_1 three_prime_UTR 66335054 66335310 66335054 ID=Msa0218860-mRNA-1:three_prime_utr;Parent=Msa0218860-mRNA-1
Gene Sequence

>Msa0218860

CTGAACAAACCAACTAAAACATTTCCAATTTCAATTCTCCAATTTGGTTCGTTATCCTCTTCTTCTTCTTCTCAAAAATCCATGGCAGTGGTATCTTCAAGCCACAACCTATTCTCCACTTTCACTCGCTTCAACAACTCATCTAGAACAAATCCCCACTCACAGAGAACCAACAGCGCAAGATTGATTCGAATTCGATGCAGTGGTGATTTGAGCACATGTGCTACAAACACAGTTGAGAATCAGCAGCGAGTGAAACTGAGTAACGGAAACGATTCATTGGAAATATGTAGAGTTCTTAATGGAATGTGGCAGACAAGTGGTGGTTGGGGGAGGATTGATAGAGACGACGCCGTTGAAGCTATGCTCCGGTATGCTGATTCCGGCTTATCTACCTTCGACATGGCTGATCACTGTATAGTTTCTGCTGTTGCTAAAGCTACTTTTCACACTTTGAGCAGTTTGAAAATGACTGAGTTATTACAGCATTCTTTGAGCAAATTCACTTATTACAGTTCAAACAGAACACCAACAAGAGGAATTGCAACAAGAGAATATAAGCATTTGAGACCATGTCAGTGTGTGACTACCCAGGAGGATAATCGGCGCATTGTGGTCAGTAATGGGAAGGATTCATTGGATATAACTCGGGTTGTGAATGGAATGTGGCAAACGAGTGGCGGATGGGGCAGAATTGATAGGGATGAGGCTGTTGATTCTATGCTTAAATACGCTGATGCTGGATTAACCACTTTCGATATGGCTGATATATATGGGCCAGCTGAAGATTTATATGGGATTTTCATCAATCGAGTTCGTCGTGAGCGGCCACCAGAATTTTTGGAAAAGGTCAGAGGTCTCACTAAGTGGGTGCCACCACCAGTTAAGATGACAAGTAGCTTTGTAAGAGACAACATTAATGTGTCAAGGAAGAGAATGGACGTGGAATCCTTGGATATGCTTCAGTTCCATTGGTGGGATTATTCAAATTCAGGATACCTTGATGCACTAAAACACCTCACAGACTTGAAAGGAGAAGGTAAAATCAAAACTATAGCTCTTACAAATTTTGATACCGAGAGATTACAAATTATTCTTGAAAATGAGATTCCCATTGTGAGCAATCAGGTACAACATTCACTAGTTGATATGCGTCCCCAACAGAAAATGGCAGAGCTTTGTCAGCTTACAGGAGTCAAACTGATAACGTATGGGACAGTAATGGGTGGTCTGTTGTCTGAGAAGTTCCTTGACACCAACATAAACATCCCTTTTGCTGGACCTGCAATTAACACTCCATCCCTCTCAAAATACAAAAGGATGGTGGATGCTTGGGGAGGATGGGGTTTGTTCCAAGGACTTCTTCGAACTCTTAAGCAAGTAGCTACTAAGCATGGCGTTACAATTCCAACTGTTGCTGTGAAGTATATACTAGACCAGCCTGCTGTAGCAGGATCAATGGTTGGTGTAAGACTTGGCTTGTCAGAACATATTCAAGACTGCAATGCTATCTTTTCACTTGTTCTTGATGAAGAAGATGTAAACAGCATAAGGGAAGCAGCAGGGAAAGGCAAGGATCTTCTTAAAGTGATTGGTGACTGTGGAGATGAGTACAGGCGTGCATGA

Protein sequence

>Msa0218860

LNKPTKTFPISILQFGSLSSSSSSQKSMAVVSSSHNLFSTFTRFNNSSRTNPHSQRTNSARLIRIRCSGDLSTCATNTVENQQRVKLSNGNDSLEICRVLNGMWQTSGGWGRIDRDDAVEAMLRYADSGLSTFDMADHCIVSAVAKATFHTLSSLKMTELLQHSLSKFTYYSSNRTPTRGIATREYKHLRPCQCVTTQEDNRRIVVSNGKDSLDITRVVNGMWQTSGGWGRIDRDEAVDSMLKYADAGLTTFDMADIYGPAEDLYGIFINRVRRERPPEFLEKVRGLTKWVPPPVKMTSSFVRDNINVSRKRMDVESLDMLQFHWWDYSNSGYLDALKHLTDLKGEGKIKTIALTNFDTERLQIILENEIPIVSNQVQHSLVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNINIPFAGPAINTPSLSKYKRMVDAWGGWGLFQGLLRTLKQVATKHGVTIPTVAVKYILDQPAVAGSMVGVRLGLSEHIQDCNAIFSLVLDEEDVNSIREAAGKGKDLLKVIGDCGDEYRRA*