AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0542040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0542040 MtrunA17_Chr4g0033851 99.153 236 1 1 1 235 1 236 3.31e-164 456
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0542040 AT1G65260.1 74.408 211 50 3 27 235 37 245 1.94e-106 311
Msa0542040 AT1G65260.2 83.333 174 29 0 62 235 1 174 3.77e-103 300

Find 50 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGGATCCCGAGAAAATTT+TGG 0.219648 4_1:-26155295 Msa0542040:CDS
AGGAATGAAGATTGCGAAAC+CGG 0.398735 4_1:-26155498 Msa0542040:CDS
AACCAAGGTGAGCGAGATGC+TGG 0.402351 4_1:-26151958 Msa0542040:CDS
TGCTATTGTAAGTTCGTTTG+AGG 0.410005 4_1:-26155313 Msa0542040:CDS
ATCGCTCCTCCGCCTCGAAC+CGG 0.418009 4_1:+26155479 None:intergenic
AGATATTGCTTGCGATTTCG+AGG 0.427185 4_1:+26155804 None:intergenic
AGCTCAACTTGATCAGCAAA+AGG 0.437200 4_1:-26153267 Msa0542040:CDS
CCTCTCGCCACTTCCTTCTT+CGG 0.437920 4_1:-26155640 Msa0542040:CDS
GGCGGAGGAGCGATTGGTGC+AGG 0.458931 4_1:-26155470 Msa0542040:CDS
AAACTTTGCAGATTGAGCTC+TGG 0.463191 4_1:+26152081 None:intergenic
GCGAAACCGGTTCGAGGCGG+AGG 0.476073 4_1:-26155485 Msa0542040:CDS
TCCTTCTTCGGCACCAGACC+AGG 0.477743 4_1:-26155628 Msa0542040:intron
GAAGAGTTGTTTGAAGATGA+TGG 0.481607 4_1:+26155771 None:intergenic
AACTAACTTGTGCTGTAGCT+TGG 0.486023 4_1:+26155229 None:intergenic
ACCTGGTCTGGTGCCGAAGA+AGG 0.487099 4_1:+26155627 None:intergenic
ATTTATATAGAGAGTGGACT+TGG 0.496131 4_1:+26151865 None:intergenic
AAGTTGAGCTTTCAAAGCAC+TGG 0.504664 4_1:+26153280 None:intergenic
AGTACTTATAAGTTGTATCC+TGG 0.512122 4_1:-26151842 Msa0542040:three_prime_UTR
TCCCAGCATCTCGCTCACCT+TGG 0.521392 4_1:+26151956 None:intergenic
GAAGATTGAAGTGGTGCGGA+GGG 0.523856 4_1:+26155685 None:intergenic
AGAAGATTGAAGTGGTGCGG+AGG 0.527050 4_1:+26155684 None:intergenic
TTCAATTCTTTCAGCAAACA+CGG 0.531772 4_1:-26155531 Msa0542040:intron
GTTCGAGGCGGAGGAGCGAT+TGG 0.531819 4_1:-26155476 Msa0542040:CDS
AGAAGAAGATTGAAGTGGTG+CGG 0.538986 4_1:+26155681 None:intergenic
TCAGGAGGCGAGGTCGAAGA+AGG 0.540578 4_1:-26152116 Msa0542040:CDS
TTCCTTTAGGACTTCAACCA+AGG 0.549139 4_1:-26151973 Msa0542040:intron
TCTGGTGCCGAAGAAGGAAG+TGG 0.564814 4_1:+26155633 None:intergenic
GCACAACTTGCTCTTCAGAA+AGG 0.564967 4_1:-26154372 Msa0542040:CDS
AAGATTGCGAAACCGGTTCG+AGG 0.567519 4_1:-26155491 Msa0542040:CDS
GCTCAACTTGATCAGCAAAA+GGG 0.571576 4_1:-26153266 Msa0542040:CDS
TCAAACAATAAGTGCAGACC+AGG 0.575396 4_1:+26151824 None:intergenic
GAAAATGAGAGAACCTGGTC+TGG 0.577981 4_1:+26155615 None:intergenic
ACCAAGGTGAGCGAGATGCT+GGG 0.593815 4_1:-26151957 Msa0542040:CDS
AGTACTATTTATATAGAGAG+TGG 0.594447 4_1:+26151859 None:intergenic
CAACACAAGCTTCTGAAGAG+TGG 0.599112 4_1:-26154491 Msa0542040:intron
GAGGAAGAAGAAGATTGAAG+TGG 0.604277 4_1:+26155676 None:intergenic
AAGATTTACGAGAGTCGTGA+AGG 0.612658 4_1:-26155432 Msa0542040:intron
GAGAGGCTTTCTGAGAGAAG+AGG 0.612773 4_1:+26155657 None:intergenic
CGAGAGGAATCACTTTCACA+AGG 0.616779 4_1:-26155855 Msa0542040:five_prime_UTR
CGCAAACATCGAAGAACGAG+AGG 0.617984 4_1:-26155871 Msa0542040:five_prime_UTR
ACGGATGGAAAATAAATACA+AGG 0.623103 4_1:-26154517 Msa0542040:CDS
GCAAACACGGTGAAATTCAG+AGG 0.626460 4_1:-26155518 Msa0542040:CDS
TTTGGAGAGTAAAATTCAGG+AGG 0.632036 4_1:-26152131 Msa0542040:CDS
CCGAAGAAGGAAGTGGCGAG+AGG 0.648845 4_1:+26155640 None:intergenic
ACAGTCTTGTCTCAAATACA+CGG 0.649426 4_1:-26153235 Msa0542040:CDS
AGAGTAAAATTCAGGAGGCG+AGG 0.657033 4_1:-26152126 Msa0542040:CDS
CAGTCTTGTCTCAAATACAC+GGG 0.662428 4_1:-26153234 Msa0542040:intron
CTGGGAAATGTCAATACAAG+TGG 0.671165 4_1:-26151939 Msa0542040:CDS
TTGCTCGTGAAGCACTTAAG+CGG 0.691632 4_1:-26154338 Msa0542040:CDS
ATTGCGAAACCGGTTCGAGG+CGG 0.697968 4_1:-26155488 Msa0542040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCATAATATGAAATAAAA+GGG + chr4_1:26154126-26154145 None:intergenic 10.0%
!! TATTCATAATATGAAATAAA+AGG + chr4_1:26154127-26154146 None:intergenic 10.0%
!! TCTAGTATTAAATTTATTAG+TGG - chr4_1:26154208-26154227 Msa0542040:intron 15.0%
!! ATATATAGCAATGATAAGAA+TGG + chr4_1:26152544-26152563 None:intergenic 20.0%
!! TTCTTATCATTGCTATATAT+TGG - chr4_1:26152544-26152563 Msa0542040:intron 20.0%
!! AATATTTAACTATGAGACAT+AGG - chr4_1:26152571-26152590 Msa0542040:intron 20.0%
!! TAAGTTATATGAAACTGTTT+GGG + chr4_1:26153025-26153044 None:intergenic 20.0%
!! ATAAGTTATATGAAACTGTT+TGG + chr4_1:26153026-26153045 None:intergenic 20.0%
!!! CTATTTTGAAGTTAGTTTTA+GGG + chr4_1:26153086-26153105 None:intergenic 20.0%
!!! GGTTTTACAATAAAAATAAC+TGG + chr4_1:26153109-26153128 None:intergenic 20.0%
!! GTTATGAGGTTATTTAAATT+AGG + chr4_1:26153674-26153693 None:intergenic 20.0%
!! TTGTACTAGTTGTATATAAT+TGG - chr4_1:26154075-26154094 Msa0542040:intron 20.0%
!! ACATTACTCAAAATTTCATT+CGG + chr4_1:26154150-26154169 None:intergenic 20.0%
!!! GAAATTTTGAGTAATGTTTA+AGG - chr4_1:26154153-26154172 Msa0542040:intron 20.0%
!!! GTATTTCTTTTTGAATAGTA+TGG - chr4_1:26154183-26154202 Msa0542040:intron 20.0%
!! TATGTGATAAATGTTTGATA+CGG + chr4_1:26154354-26154373 None:intergenic 20.0%
!! TCAAACATTTATCACATAAT+TGG - chr4_1:26154356-26154375 Msa0542040:CDS 20.0%
!!! TTCAATTTAGCTTAACTTTT+TGG - chr4_1:26154654-26154673 Msa0542040:intron 20.0%
!! TAATTACTAAAACAAACCTA+GGG + chr4_1:26154794-26154813 None:intergenic 20.0%
!! TTAATTACTAAAACAAACCT+AGG + chr4_1:26154795-26154814 None:intergenic 20.0%
!! AAAAAAAAGTAAAATAGCCT+AGG + chr4_1:26155114-26155133 None:intergenic 20.0%
!! TGAAATATTATTGTATGTGT+AGG + chr4_1:26155384-26155403 None:intergenic 20.0%
!!! TTATTCCATTCTGTATTTTA+TGG - chr4_1:26155673-26155692 Msa0542040:CDS 20.0%
!! TTTTCAGTTTTTGCGATTTT+AGG - chr4_1:26152316-26152335 Msa0542040:intron 25.0%
!!! GTTAGTTACTTTCTCTTTTT+TGG - chr4_1:26152485-26152504 Msa0542040:intron 25.0%
!!! TTCTCTTTTTTGGTTTCTTT+TGG - chr4_1:26152495-26152514 Msa0542040:intron 25.0%
! AATAAGTTGTTTATCCAAAC+AGG + chr4_1:26152618-26152637 None:intergenic 25.0%
!!! GCTATTTTGAAGTTAGTTTT+AGG + chr4_1:26153087-26153106 None:intergenic 25.0%
! AAAAAGAAACAACGATAAGA+TGG + chr4_1:26153130-26153149 None:intergenic 25.0%
!!! ATTTATTTTAATTCGCTTGC+AGG - chr4_1:26153247-26153266 Msa0542040:CDS 25.0%
!!! TTTATTTTAATTCGCTTGCA+GGG - chr4_1:26153248-26153267 Msa0542040:CDS 25.0%
!!! TTCTGCTTTAGATTTTAAAG+AGG - chr4_1:26153447-26153466 Msa0542040:intron 25.0%
! GGTTATTTAAATTAGGAACA+CGG + chr4_1:26153667-26153686 None:intergenic 25.0%
! AACCTCATAACCAAATATTT+AGG - chr4_1:26153683-26153702 Msa0542040:intron 25.0%
! AACCTAAATATTTGGTTATG+AGG + chr4_1:26153688-26153707 None:intergenic 25.0%
! CTTTCACAAACCTAAATATT+TGG + chr4_1:26153696-26153715 None:intergenic 25.0%
!! CAAATATTTAGGTTTGTGAA+AGG - chr4_1:26153694-26153713 Msa0542040:intron 25.0%
!!! GTGTTGTTGATTGAAAATTT+TGG - chr4_1:26153890-26153909 Msa0542040:intron 25.0%
! CATTTATCACATAATTGGAA+AGG - chr4_1:26154361-26154380 Msa0542040:CDS 25.0%
! TGTATTATTAAAACCTTACC+AGG - chr4_1:26154705-26154724 Msa0542040:intron 25.0%
! AATATAATTATGACCTGGTA+AGG + chr4_1:26154721-26154740 None:intergenic 25.0%
! CTGAAAATATAATTATGACC+TGG + chr4_1:26154726-26154745 None:intergenic 25.0%
! AATTACTAAAACAAACCTAG+GGG + chr4_1:26154793-26154812 None:intergenic 25.0%
! AAACAATAGTTCATTATCAG+GGG + chr4_1:26154821-26154840 None:intergenic 25.0%
! CAAACAATAGTTCATTATCA+GGG + chr4_1:26154822-26154841 None:intergenic 25.0%
! TCAAACAATAGTTCATTATC+AGG + chr4_1:26154823-26154842 None:intergenic 25.0%
!!! ATATCCAAGTTTTGCTTTTA+GGG - chr4_1:26154879-26154898 Msa0542040:intron 25.0%
! TTCTGCATTGTGTAAAAAAT+TGG - chr4_1:26154924-26154943 Msa0542040:intron 25.0%
! TCTGCATTGTGTAAAAAATT+GGG - chr4_1:26154925-26154944 Msa0542040:intron 25.0%
!! TTCTAGGGATAATTCATATA+TGG + chr4_1:26155270-26155289 None:intergenic 25.0%
! GGAAAAAGTTGCATAAATAA+AGG + chr4_1:26155360-26155379 None:intergenic 25.0%
! AATATTATTGTATGTGTAGG+TGG + chr4_1:26155381-26155400 None:intergenic 25.0%
! AAATACAGAATGGAATAAGA+TGG + chr4_1:26155671-26155690 None:intergenic 25.0%
! AAGAACCATAAAATACAGAA+TGG + chr4_1:26155681-26155700 None:intergenic 25.0%
!! TTCTTTTAGTAATGTCTTGT+TGG - chr4_1:26155696-26155715 Msa0542040:CDS 25.0%
! TTTGAAAAAATGGAAGAGAA+AGG - chr4_1:26155795-26155814 Msa0542040:five_prime_UTR 25.0%
! AGTACTATTTATATAGAGAG+TGG + chr4_1:26155842-26155861 None:intergenic 25.0%
GCTGAAAGAATTGAAAAAAG+TGG + chr4_1:26152162-26152181 None:intergenic 30.0%
TTCAATTCTTTCAGCAAACA+CGG - chr4_1:26152167-26152186 Msa0542040:intron 30.0%
ATTTAACTATGAGACATAGG+TGG - chr4_1:26152574-26152593 Msa0542040:intron 30.0%
ACGGATGGAAAATAAATACA+AGG - chr4_1:26153181-26153200 Msa0542040:intron 30.0%
AGATGTGTAAAACACAAAAG+TGG + chr4_1:26153289-26153308 None:intergenic 30.0%
TCATATTGCAAACATGTGAA+AGG + chr4_1:26153524-26153543 None:intergenic 30.0%
! AGTTCAGACATTTTAGATGA+TGG - chr4_1:26153776-26153795 Msa0542040:intron 30.0%
TAGAAAAGTTAACCATTGTG+AGG + chr4_1:26153806-26153825 None:intergenic 30.0%
! GCTATAGTTTGACATTTTGT+TGG - chr4_1:26153918-26153937 Msa0542040:intron 30.0%
TACTATTTATAGTTCCGCTT+TGG + chr4_1:26154045-26154064 None:intergenic 30.0%
AGGGATAACAAAATCGAAAA+TGG + chr4_1:26154107-26154126 None:intergenic 30.0%
! ATACACTTTTAACATGTTGC+AGG - chr4_1:26154389-26154408 Msa0542040:intron 30.0%
! TTTTGTGAAACATGGCATTT+AGG + chr4_1:26154536-26154555 None:intergenic 30.0%
!! GTCAATTGTTTTGTGAAACA+TGG + chr4_1:26154544-26154563 None:intergenic 30.0%
CTATTGTTTGATCTGCAATT+AGG - chr4_1:26154832-26154851 Msa0542040:intron 30.0%
!! GATATCCAAGTTTTGCTTTT+AGG - chr4_1:26154878-26154897 Msa0542040:intron 30.0%
AACTGAAGTTTGAAAGAAAG+AGG + chr4_1:26155172-26155191 None:intergenic 30.0%
!! AAAGGAAAATAGGTTTTGGT+TGG + chr4_1:26155205-26155224 None:intergenic 30.0%
CATTGAAAACCATGGTTTAT+GGG + chr4_1:26155293-26155312 None:intergenic 30.0%
AAGTTGCATAAATAAAGGTG+AGG + chr4_1:26155355-26155374 None:intergenic 30.0%
CAATAATATTTCAGTCCACT+AGG - chr4_1:26155391-26155410 Msa0542040:intron 30.0%
CCAATTCAATCGTTTCTAAA+CGG + chr4_1:26155442-26155461 None:intergenic 30.0%
!!! CATTTTTTCAAAAGCGGAAA+GGG + chr4_1:26155787-26155806 None:intergenic 30.0%
!!! CTCTTCCATTTTTTCAAAAG+CGG + chr4_1:26155793-26155812 None:intergenic 30.0%
! ATTTATATAGAGAGTGGACT+TGG + chr4_1:26155836-26155855 None:intergenic 30.0%
AGTACTTATAAGTTGTATCC+TGG - chr4_1:26155856-26155875 Msa0542040:five_prime_UTR 30.0%
GAAGAGTTGTTTGAAGATGA+TGG + chr4_1:26151930-26151949 None:intergenic 35.0%
TTCTCTTCCGATCACAAAAA+TGG - chr4_1:26151961-26151980 Msa0542040:CDS 35.0%
ATTGAGAAAATGAGAGAACC+TGG + chr4_1:26152091-26152110 None:intergenic 35.0%
TGCTATTGTAAGTTCGTTTG+AGG - chr4_1:26152385-26152404 Msa0542040:intron 35.0%
!! AGCTTGCTCCAAAATTTTCT+CGG + chr4_1:26152414-26152433 None:intergenic 35.0%
! CAAACAGGACCTTAATTTTC+AGG + chr4_1:26152603-26152622 None:intergenic 35.0%
CTGAAAATTAAGGTCCTGTT+TGG - chr4_1:26152601-26152620 Msa0542040:intron 35.0%
! TATACCGCCATAGCATTTTA+GGG + chr4_1:26152771-26152790 None:intergenic 35.0%
! ATTTTCAGTCTTTGCAATGG+CGG + chr4_1:26152810-26152829 None:intergenic 35.0%
! CTGATTTTCAGTCTTTGCAA+TGG + chr4_1:26152813-26152832 None:intergenic 35.0%
! TCAATAGTGTTGCTATAGCA+TGG + chr4_1:26152900-26152919 None:intergenic 35.0%
AAACTGTTTGGGAGAACTTA+TGG + chr4_1:26153014-26153033 None:intergenic 35.0%
TCAAATAAGCCAATCCAAAC+AGG - chr4_1:26153060-26153079 Msa0542040:intron 35.0%
!!! TTCTTTTTTCCCCTTTCTTG+AGG - chr4_1:26153142-26153161 Msa0542040:intron 35.0%
! GTGTTTTACACATCTGATGT+AGG - chr4_1:26153294-26153313 Msa0542040:intron 35.0%
TGCAAACATGTGAAAGGAAA+TGG + chr4_1:26153518-26153537 None:intergenic 35.0%
TGATATTGCTAAGCTATGTG+AGG + chr4_1:26153570-26153589 None:intergenic 35.0%
! ACAGTCTTGTCTCAAATACA+CGG - chr4_1:26154463-26154482 Msa0542040:intron 35.0%
!! AAACAATTGACTTGAAACCC+TGG - chr4_1:26154553-26154572 Msa0542040:intron 35.0%
!! AACAATTGACTTGAAACCCT+GGG - chr4_1:26154554-26154573 Msa0542040:intron 35.0%
CTCCAAAAAAAGAGTCAGTT+CGG + chr4_1:26154588-26154607 None:intergenic 35.0%
!!! CTTTTTTTGGAGCCACATAA+TGG - chr4_1:26154596-26154615 Msa0542040:intron 35.0%
TGTAGAAATTGCTACACGTT+TGG - chr4_1:26155024-26155043 Msa0542040:intron 35.0%
TAGGCATCATACCTAGAATT+TGG + chr4_1:26155064-26155083 None:intergenic 35.0%
AATTCTAGGTATGATGCCTA+AGG - chr4_1:26155064-26155083 Msa0542040:intron 35.0%
!!! AATAGGTTTTGGTTGGTAGT+TGG + chr4_1:26155198-26155217 None:intergenic 35.0%
! AGGCAAAGGAAAATAGGTTT+TGG + chr4_1:26155209-26155228 None:intergenic 35.0%
AATTAAAACCTGACAGGCAA+AGG + chr4_1:26155223-26155242 None:intergenic 35.0%
GTAGACAATTAAAACCTGAC+AGG + chr4_1:26155229-26155248 None:intergenic 35.0%
GCATTGAAAACCATGGTTTA+TGG + chr4_1:26155294-26155313 None:intergenic 35.0%
!! CATACAAGCATTGAAAACCA+TGG + chr4_1:26155301-26155320 None:intergenic 35.0%
! CATGGTTTTCAATGCTTGTA+TGG - chr4_1:26155299-26155318 Msa0542040:CDS 35.0%
CCGTTTAGAAACGATTGAAT+TGG - chr4_1:26155439-26155458 Msa0542040:CDS 35.0%
TTAGCTCACTGTTCTAATAC+AGG - chr4_1:26155472-26155491 Msa0542040:CDS 35.0%
ACAGCTTACATTCAGAATTG+AGG + chr4_1:26155534-26155553 None:intergenic 35.0%
! GCTGTTCAATTTGTAGCTTT+TGG - chr4_1:26155549-26155568 Msa0542040:intron 35.0%
!! GCTTTTGGAGAGTAAAATTC+AGG - chr4_1:26155564-26155583 Msa0542040:intron 35.0%
TTTGGAGAGTAAAATTCAGG+AGG - chr4_1:26155567-26155586 Msa0542040:intron 35.0%
TGGAATAAGATGGAAGCAAA+TGG + chr4_1:26155661-26155680 None:intergenic 35.0%
!!! CCATTTTTTCAAAAGCGGAA+AGG + chr4_1:26155788-26155807 None:intergenic 35.0%
!! CCTTTCCGCTTTTGAAAAAA+TGG - chr4_1:26155785-26155804 Msa0542040:five_prime_UTR 35.0%
AGATATTGCTTGCGATTTCG+AGG + chr4_1:26151897-26151916 None:intergenic 40.0%
!!! TTCGTCGCCATTTTTGTGAT+CGG + chr4_1:26151971-26151990 None:intergenic 40.0%
AGAAGAAGATTGAAGTGGTG+CGG + chr4_1:26152020-26152039 None:intergenic 40.0%
GAGGAAGAAGAAGATTGAAG+TGG + chr4_1:26152025-26152044 None:intergenic 40.0%
AGGAATGAAGATTGCGAAAC+CGG - chr4_1:26152200-26152219 Msa0542040:intron 40.0%
AAGATTTACGAGAGTCGTGA+AGG - chr4_1:26152266-26152285 Msa0542040:intron 40.0%
! TGAGGATCCCGAGAAAATTT+TGG - chr4_1:26152403-26152422 Msa0542040:intron 40.0%
! GCTTGCTCCAAAATTTTCTC+GGG + chr4_1:26152413-26152432 None:intergenic 40.0%
! AACTAACTTGTGCTGTAGCT+TGG + chr4_1:26152472-26152491 None:intergenic 40.0%
AGGTGGCATCCTGAAAATTA+AGG - chr4_1:26152591-26152610 Msa0542040:intron 40.0%
! AGCTATCTGGGACTAACAAT+AGG + chr4_1:26152732-26152751 None:intergenic 40.0%
ACTTACCCCCTAAAATGCTA+TGG - chr4_1:26152761-26152780 Msa0542040:intron 40.0%
! ATACCGCCATAGCATTTTAG+GGG + chr4_1:26152770-26152789 None:intergenic 40.0%
! CTATACCGCCATAGCATTTT+AGG + chr4_1:26152772-26152791 None:intergenic 40.0%
!!! AGTTAGTTTTAGGGCCTGTT+TGG + chr4_1:26153077-26153096 None:intergenic 40.0%
!! AGGTGTTGGCATCTCAAAAA+CGG - chr4_1:26153162-26153181 Msa0542040:intron 40.0%
TTTAATTCGCTTGCAGGGTT+TGG - chr4_1:26153253-26153272 Msa0542040:CDS 40.0%
TATTGCTAAGCTATGTGAGG+AGG + chr4_1:26153567-26153586 None:intergenic 40.0%
!! AGCATCGGTAAAACCTTGAT+TGG - chr4_1:26153632-26153651 Msa0542040:intron 40.0%
ACGGTGTAAAGTTCCAATCA+AGG + chr4_1:26153648-26153667 None:intergenic 40.0%
GTGAAAGGAAATGACCATTC+TGG - chr4_1:26153709-26153728 Msa0542040:intron 40.0%
! ATTCTGGTTGTCATGTCCTT+GGG - chr4_1:26153725-26153744 Msa0542040:intron 40.0%
TCAAACCACATAATGACCCA+AGG + chr4_1:26153744-26153763 None:intergenic 40.0%
TGTCATCAGCGTCGTATTTA+CGG + chr4_1:26153870-26153889 None:intergenic 40.0%
GATACCTCTGTTGTCAAAAG+CGG - chr4_1:26153943-26153962 Msa0542040:intron 40.0%
! TCCTGATTTTTCCGCTATAG+CGG + chr4_1:26153978-26153997 None:intergenic 40.0%
AAGTTGAGCTTTCAAAGCAC+TGG + chr4_1:26154421-26154440 None:intergenic 40.0%
AGCTCAACTTGATCAGCAAA+AGG - chr4_1:26154431-26154450 Msa0542040:intron 40.0%
GCTCAACTTGATCAGCAAAA+GGG - chr4_1:26154432-26154451 Msa0542040:intron 40.0%
! CAGTCTTGTCTCAAATACAC+GGG - chr4_1:26154464-26154483 Msa0542040:intron 40.0%
CATGGCATTTAGGTGCTTTA+AGG + chr4_1:26154526-26154545 None:intergenic 40.0%
!!! AGCCGAACTGACTCTTTTTT+TGG - chr4_1:26154583-26154602 Msa0542040:intron 40.0%
TCTACTGAGTCACCATTATG+TGG + chr4_1:26154611-26154630 None:intergenic 40.0%
ATGGTGACTCAGTAGAATCA+AGG - chr4_1:26154615-26154634 Msa0542040:intron 40.0%
!! GTTGACTCGTGATTATGTTG+TGG - chr4_1:26154681-26154700 Msa0542040:intron 40.0%
CCAACCCTAAAAGCAAAACT+TGG + chr4_1:26154886-26154905 None:intergenic 40.0%
!!! CCAAGTTTTGCTTTTAGGGT+TGG - chr4_1:26154883-26154902 Msa0542040:intron 40.0%
CACGGTGAAATCCAAATTCT+AGG - chr4_1:26155050-26155069 Msa0542040:intron 40.0%
ACCATGGTTTATGGGTTCTA+GGG + chr4_1:26155285-26155304 None:intergenic 40.0%
AACCATGGTTTATGGGTTCT+AGG + chr4_1:26155286-26155305 None:intergenic 40.0%
! ATTTCAGTCCACTAGGCTTT+TGG - chr4_1:26155398-26155417 Msa0542040:intron 40.0%
! TTTCAGTCCACTAGGCTTTT+GGG - chr4_1:26155399-26155418 Msa0542040:intron 40.0%
AAACTTTGCAGATTGAGCTC+TGG + chr4_1:26155620-26155639 None:intergenic 40.0%
! TTGTTGGTTGACGTTCCTTT+AGG - chr4_1:26155712-26155731 Msa0542040:CDS 40.0%
!! TTCCTTTAGGACTTCAACCA+AGG - chr4_1:26155725-26155744 Msa0542040:exon 40.0%
CTGGGAAATGTCAATACAAG+TGG - chr4_1:26155759-26155778 Msa0542040:five_prime_UTR 40.0%
CGAGAGGAATCACTTTCACA+AGG - chr4_1:26151843-26151862 Msa0542040:three_prime_UTR 45.0%
GAAAATGAGAGAACCTGGTC+TGG + chr4_1:26152086-26152105 None:intergenic 45.0%
GCAAACACGGTGAAATTCAG+AGG - chr4_1:26152180-26152199 Msa0542040:intron 45.0%
AGTGCTACACGAAGCTATCT+GGG + chr4_1:26152744-26152763 None:intergenic 45.0%
AAGTGCTACACGAAGCTATC+TGG + chr4_1:26152745-26152764 None:intergenic 45.0%
TACCCCCTAAAATGCTATGG+CGG - chr4_1:26152764-26152783 Msa0542040:intron 45.0%
! TACCGCCATAGCATTTTAGG+GGG + chr4_1:26152769-26152788 None:intergenic 45.0%
TATGGCGGTATAGCAGATAG+CGG - chr4_1:26152779-26152798 Msa0542040:intron 45.0%
ATACACAACCGCTACGCTAT+CGG - chr4_1:26152869-26152888 Msa0542040:intron 45.0%
!!! GTTTTAGGGCCTGTTTGGAT+TGG + chr4_1:26153072-26153091 None:intergenic 45.0%
TTTCCCCTTTCTTGAGGTGT+TGG - chr4_1:26153148-26153167 Msa0542040:intron 45.0%
ATGCCAACACCTCAAGAAAG+GGG + chr4_1:26153154-26153173 None:intergenic 45.0%
GATGCCAACACCTCAAGAAA+GGG + chr4_1:26153155-26153174 None:intergenic 45.0%
AGATGCCAACACCTCAAGAA+AGG + chr4_1:26153156-26153175 None:intergenic 45.0%
GTTGGCATCTCAAAAACGGA+TGG - chr4_1:26153166-26153185 Msa0542040:intron 45.0%
! CAACACAAGCTTCTGAAGAG+TGG - chr4_1:26153207-26153226 Msa0542040:intron 45.0%
! GCACAACTTGCTCTTCAGAA+AGG - chr4_1:26153326-26153345 Msa0542040:intron 45.0%
! TTGCTCGTGAAGCACTTAAG+CGG - chr4_1:26153360-26153379 Msa0542040:intron 45.0%
CAAGGACATGACAACCAGAA+TGG + chr4_1:26153726-26153745 None:intergenic 45.0%
! CATTCTGGTTGTCATGTCCT+TGG - chr4_1:26153724-26153743 Msa0542040:intron 45.0%
CATGTCCTTGGGTCATTATG+TGG - chr4_1:26153736-26153755 Msa0542040:intron 45.0%
!! AGAAGTGGAAAGTGCCAAAG+CGG - chr4_1:26154028-26154047 Msa0542040:intron 45.0%
ATCGTCCTCTGTTGTCAATG+CGG + chr4_1:26154303-26154322 None:intergenic 45.0%
TTGCTACACGTTTGGTTGCA+CGG - chr4_1:26155032-26155051 Msa0542040:intron 45.0%
CTAGGTATGATGCCTAAGGA+AGG - chr4_1:26155068-26155087 Msa0542040:intron 45.0%
ATGCCTAAGGAAGGAGCTAT+AGG - chr4_1:26155077-26155096 Msa0542040:intron 45.0%
TATAGGTGCATGTGAAGCCT+AGG - chr4_1:26155094-26155113 Msa0542040:intron 45.0%
CCTGACAGGCAAAGGAAAAT+AGG + chr4_1:26155215-26155234 None:intergenic 45.0%
! CCTATTTTCCTTTGCCTGTC+AGG - chr4_1:26155212-26155231 Msa0542040:intron 45.0%
TCCCTAGAACCCATAAACCA+TGG - chr4_1:26155281-26155300 Msa0542040:CDS 45.0%
TTCTTCTCCCAAAAGCCTAG+TGG + chr4_1:26155409-26155428 None:intergenic 45.0%
AGAGTAAAATTCAGGAGGCG+AGG - chr4_1:26155572-26155591 Msa0542040:intron 45.0%
CACCTTGGTTGAAGTCCTAA+AGG + chr4_1:26155730-26155749 None:intergenic 45.0%
GAAGATTGAAGTGGTGCGGA+GGG + chr4_1:26152016-26152035 None:intergenic 50.0%
AGAAGATTGAAGTGGTGCGG+AGG + chr4_1:26152017-26152036 None:intergenic 50.0%
! GAGAGGCTTTCTGAGAGAAG+AGG + chr4_1:26152044-26152063 None:intergenic 50.0%
!! AAGATTGCGAAACCGGTTCG+AGG - chr4_1:26152207-26152226 Msa0542040:intron 50.0%
ATGGCGGTATAGCAGATAGC+GGG - chr4_1:26152780-26152799 Msa0542040:intron 50.0%
TGGAATAGCCGATAGCGTAG+CGG + chr4_1:26152880-26152899 None:intergenic 50.0%
GTTCTCATTCCTGCGAGCAT+CGG - chr4_1:26153617-26153636 Msa0542040:intron 50.0%
! AAGGTTTTACCGATGCTCGC+AGG + chr4_1:26153629-26153648 None:intergenic 50.0%
! GATGATGGCAGACCTCACAA+TGG - chr4_1:26153791-26153810 Msa0542040:intron 50.0%
! GATTTTTCCGCTATAGCGGC+CGG + chr4_1:26153974-26153993 None:intergenic 50.0%
! GCCGCTATAGCGGAAAAATC+AGG - chr4_1:26153974-26153993 Msa0542040:intron 50.0%
ACCCAATAATTGGCACGGTG+CGG + chr4_1:26154267-26154286 None:intergenic 50.0%
CACCGTGCCAATTATTGGGT+TGG - chr4_1:26154267-26154286 Msa0542040:intron 50.0%
GGCCAACCCAATAATTGGCA+CGG + chr4_1:26154272-26154291 None:intergenic 50.0%
AGCACGGCCAACCCAATAAT+TGG + chr4_1:26154277-26154296 None:intergenic 50.0%
CTCAGCTTATACTCTCCCCT+AGG - chr4_1:26154775-26154794 Msa0542040:intron 50.0%
GCACCTATAGCTCCTTCCTT+AGG + chr4_1:26155083-26155102 None:intergenic 50.0%
CCTCTCGCCACTTCCTTCTT+CGG - chr4_1:26152058-26152077 Msa0542040:intron 55.0%
! TCTGGTGCCGAAGAAGGAAG+TGG + chr4_1:26152068-26152087 None:intergenic 55.0%
!! ATTGCGAAACCGGTTCGAGG+CGG - chr4_1:26152210-26152229 Msa0542040:intron 55.0%
AAAATCAGGACCACCGCACC+AGG - chr4_1:26153988-26154007 Msa0542040:intron 55.0%
TCCCGCACCGTGCCAATTAT+TGG - chr4_1:26154262-26154281 Msa0542040:intron 55.0%
CCCAATAATTGGCACGGTGC+GGG + chr4_1:26154266-26154285 None:intergenic 55.0%
CCCGCACCGTGCCAATTATT+GGG - chr4_1:26154263-26154282 Msa0542040:intron 55.0%
CAGTTCGGCTATTCAGCCCA+GGG + chr4_1:26154573-26154592 None:intergenic 55.0%
TCAGTTCGGCTATTCAGCCC+AGG + chr4_1:26154574-26154593 None:intergenic 55.0%
AACCAAGGTGAGCGAGATGC+TGG - chr4_1:26155740-26155759 Msa0542040:exon 55.0%
ACCAAGGTGAGCGAGATGCT+GGG - chr4_1:26155741-26155760 Msa0542040:five_prime_UTR 55.0%
CCGAAGAAGGAAGTGGCGAG+AGG + chr4_1:26152061-26152080 None:intergenic 60.0%
TCCTTCTTCGGCACCAGACC+AGG - chr4_1:26152070-26152089 Msa0542040:intron 60.0%
! ACCTGGTCTGGTGCCGAAGA+AGG + chr4_1:26152074-26152093 None:intergenic 60.0%
!!! GCGGCCGCTTTTGACAACAG+AGG + chr4_1:26153950-26153969 None:intergenic 60.0%
! CGGGCGCTATTTCAGTGGTG+CGG + chr4_1:26154234-26154253 None:intergenic 60.0%
TAATTGGCACGGTGCGGGAG+CGG + chr4_1:26154261-26154280 None:intergenic 60.0%
GTTGTCAATGCGGCGCAGCA+CGG + chr4_1:26154293-26154312 None:intergenic 60.0%
! CTGCGCCGCATTGACAACAG+AGG - chr4_1:26154295-26154314 Msa0542040:intron 60.0%
TCAGGAGGCGAGGTCGAAGA+AGG - chr4_1:26155582-26155601 Msa0542040:intron 60.0%
TCCCAGCATCTCGCTCACCT+TGG + chr4_1:26155745-26155764 None:intergenic 60.0%
ATCGCTCCTCCGCCTCGAAC+CGG + chr4_1:26152222-26152241 None:intergenic 65.0%
GTTCGAGGCGGAGGAGCGAT+TGG - chr4_1:26152222-26152241 Msa0542040:intron 65.0%
GTTGTCAAAAGCGGCCGCGC+CGG - chr4_1:26153952-26153971 Msa0542040:intron 65.0%
! ACTTCTGACACGCGCCGACG+CGG + chr4_1:26154014-26154033 None:intergenic 65.0%
AATTGGCACGGTGCGGGAGC+GGG + chr4_1:26154260-26154279 None:intergenic 65.0%
!! GCGAAACCGGTTCGAGGCGG+AGG - chr4_1:26152213-26152232 Msa0542040:intron 70.0%
GGCGGAGGAGCGATTGGTGC+AGG - chr4_1:26152228-26152247 Msa0542040:intron 70.0%
TTCCGCTATAGCGGCCGGCG+CGG + chr4_1:26153969-26153988 None:intergenic 70.0%
! GCGTCGGCGCGTGTCAGAAG+TGG - chr4_1:26154013-26154032 Msa0542040:intron 70.0%
! GGGCGCGGGCGCTATTTCAG+TGG + chr4_1:26154239-26154258 None:intergenic 70.0%
ATTGGCACGGTGCGGGAGCG+GGG + chr4_1:26154259-26154278 None:intergenic 70.0%
ACCACCGCACCAGGCCGCGT+CGG - chr4_1:26153997-26154016 Msa0542040:intron 75.0%
!! GGCCGCGCCGGCCGCTATAG+CGG - chr4_1:26153964-26153983 Msa0542040:intron 80.0%
!! TGACACGCGCCGACGCGGCC+TGG + chr4_1:26154009-26154028 None:intergenic 80.0%
! GCCGACGCGGCCTGGTGCGG+TGG + chr4_1:26154001-26154020 None:intergenic 85.0%
!! CGCGCCGACGCGGCCTGGTG+CGG + chr4_1:26154004-26154023 None:intergenic 85.0%
! ACGGTGCGGGAGCGGGGCGC+GGG + chr4_1:26154253-26154272 None:intergenic 85.0%
! CACGGTGCGGGAGCGGGGCG+CGG + chr4_1:26154254-26154273 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 26151829 26155891 26151829 ID=Msa0542040;Name=Msa0542040
chr4_1 mRNA 26151829 26155891 26151829 ID=Msa0542040-mRNA-1;Parent=Msa0542040;Name=Msa0542040-mRNA-1;_AED=0.12;_eAED=0.12;_QI=151|1|1|1|1|1|8|34|248
chr4_1 exon 26151829 26151986 26151829 ID=Msa0542040-mRNA-1:exon:7100;Parent=Msa0542040-mRNA-1
chr4_1 exon 26152085 26152155 26152085 ID=Msa0542040-mRNA-1:exon:7099;Parent=Msa0542040-mRNA-1
chr4_1 exon 26153235 26153309 26153235 ID=Msa0542040-mRNA-1:exon:7098;Parent=Msa0542040-mRNA-1
chr4_1 exon 26154323 26154404 26154323 ID=Msa0542040-mRNA-1:exon:7097;Parent=Msa0542040-mRNA-1
chr4_1 exon 26154492 26154556 26154492 ID=Msa0542040-mRNA-1:exon:7096;Parent=Msa0542040-mRNA-1
chr4_1 exon 26155236 26155346 26155236 ID=Msa0542040-mRNA-1:exon:7095;Parent=Msa0542040-mRNA-1
chr4_1 exon 26155433 26155539 26155433 ID=Msa0542040-mRNA-1:exon:7094;Parent=Msa0542040-mRNA-1
chr4_1 exon 26155629 26155891 26155629 ID=Msa0542040-mRNA-1:exon:7093;Parent=Msa0542040-mRNA-1
chr4_1 five_prime_UTR 26155741 26155891 26155741 ID=Msa0542040-mRNA-1:five_prime_utr;Parent=Msa0542040-mRNA-1
chr4_1 CDS 26155629 26155740 26155629 ID=Msa0542040-mRNA-1:cds;Parent=Msa0542040-mRNA-1
chr4_1 CDS 26155433 26155539 26155433 ID=Msa0542040-mRNA-1:cds;Parent=Msa0542040-mRNA-1
chr4_1 CDS 26155236 26155346 26155236 ID=Msa0542040-mRNA-1:cds;Parent=Msa0542040-mRNA-1
chr4_1 CDS 26154492 26154556 26154492 ID=Msa0542040-mRNA-1:cds;Parent=Msa0542040-mRNA-1
chr4_1 CDS 26154323 26154404 26154323 ID=Msa0542040-mRNA-1:cds;Parent=Msa0542040-mRNA-1
chr4_1 CDS 26153235 26153309 26153235 ID=Msa0542040-mRNA-1:cds;Parent=Msa0542040-mRNA-1
chr4_1 CDS 26152085 26152155 26152085 ID=Msa0542040-mRNA-1:cds;Parent=Msa0542040-mRNA-1
chr4_1 CDS 26151863 26151986 26151863 ID=Msa0542040-mRNA-1:cds;Parent=Msa0542040-mRNA-1
chr4_1 three_prime_UTR 26151829 26151862 26151829 ID=Msa0542040-mRNA-1:three_prime_utr;Parent=Msa0542040-mRNA-1
Gene Sequence

>Msa0542040

ATGGCGACGAAGCTTCAAATATTTACACAATTACCCTCCGCACCACTTCAATCTTCTTCTTCCTCTTCTCTCAGAAAGCCTCTCGCCACTTCCTTCTTCGGCACCAGACCAGCAAACACGGTGAAATTCAGAGGAATGAAGATTGCGAAACCGGTTCGAGGCGGAGGAGCGATTGGTGCAGGCATGAACTTATTTGAAAGATTTACGAGAGTCGTGAAGTCATACGCAAATGCTATTGTAAGTTCGTTTGAGGATCCCGAGAAAATTTTGGAGCAAGCTGTGCTTGAAATGAACGATGATTTGACTAAAATGCGCCAAGCTACAGCACAAGTGTTGGCATCTCAAAAACGGATGGAAAATAAATACAAGGCTGCAACACAAGCTTCTGAAGAGTGGTATCGTAAAGCACAACTTGCTCTTCAGAAAGGTGAAGAAGATCTTGCTCGTGAAGCACTTAAGCGGCGTAAATCTTTTGCAGATAATGCCAGTGCTTTGAAAGCTCAACTTGATCAGCAAAAGGGTGTTGTTGACAGTCTTGTCTCAAATACACGGCTTTTGGAGAGTAAAATTCAGGAGGCGAGGTCGAAGAAGGATACTCTAAAAGCCAGAGCTCAATCTGCAAAGACTTCAACCAAGGTGAGCGAGATGCTGGGAAATGTCAATACAAGTGGTGCCCTTTCCGCTTTTGAAAAAATGGAAGAGAAAGGTGAGAAGAAAACTCACCAAGTCCACTCTCTATATAAATAG

Protein sequence

>Msa0542040

MATKLQIFTQLPSAPLQSSSSSSLRKPLATSFFGTRPANTVKFRGMKIAKPVRGGGAIGAGMNLFERFTRVVKSYANAIVSSFEDPEKILEQAVLEMNDDLTKMRQATAQVLASQKRMENKYKAATQASEEWYRKAQLALQKGEEDLAREALKRRKSFADNASALKAQLDQQKGVVDSLVSNTRLLESKIQEARSKKDTLKARAQSAKTSTKVSEMLGNVNTSGALSAFEKMEEKGEKKTHQVHSLYK*