AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0149630

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0149630 MtrunA17_Chr1g0146431 93.121 596 18 5 1 595 1 574 0.0 1110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0149630 AT2G25870.1 71.881 505 124 1 91 595 98 584 0.0 719
Msa0149630 AT5G38747.1 57.627 59 22 1 402 460 73 128 1.80e-14 71.6

Find 166 sgRNAs with CRISPR-Local

Find 453 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATGGCTTGTTACATCTTT+TGG 0.104044 1_4:-10481566 Msa0149630:CDS
ATCATGTTTCATATATTAAA+AGG 0.137655 1_4:+10476890 None:intergenic
CCAGCAATTGCAACCATTTC+GGG 0.172046 1_4:-10484080 Msa0149630:CDS
TTCCAGGGATTGCTTGTTTA+TGG 0.209459 1_4:-10479417 Msa0149630:intron
TGTCATTTATTTGTCATTAT+TGG 0.217372 1_4:-10476975 Msa0149630:three_prime_UTR
CAACAAGTGGATCATGAAAA+AGG 0.221799 1_4:+10478795 None:intergenic
CCCTTCTGTTGAAGATCTTC+TGG 0.243748 1_4:-10478645 Msa0149630:CDS
CCCGAAATGGTTGCAATTGC+TGG 0.248358 1_4:+10484080 None:intergenic
ACCAGCAATTGCAACCATTT+CGG 0.249025 1_4:-10484081 Msa0149630:CDS
AGATCATTTATCATTTCTTT+TGG 0.253794 1_4:+10484430 None:intergenic
AGGAAAAGTATTGGATTGTT+TGG 0.271230 1_4:-10479747 Msa0149630:CDS
GCAATGTTGCTTTCGTTTCT+CGG 0.271933 1_4:+10484342 None:intergenic
TGGCTGTAACTCATTCATTA+AGG 0.281685 1_4:-10476955 Msa0149630:three_prime_UTR
AATTACCATCTGAACTGTTT+TGG 0.282851 1_4:+10481407 None:intergenic
AAGAAGAAGAAGGAGATTAT+TGG 0.283048 1_4:+10484286 None:intergenic
GCAGGCATGTCTTTACTCTT+TGG 0.308750 1_4:-10478864 Msa0149630:intron
AAGTAACTAACCAAGATTTC+AGG 0.308843 1_4:+10483929 None:intergenic
ATGCTTGAGCTGGCTTCTTT+AGG 0.329248 1_4:-10477233 Msa0149630:CDS
AACTCCTTCTTCTTCCTCTT+CGG 0.352512 1_4:+10483998 None:intergenic
TCTTTACTCTTTGGAGAGTA+AGG 0.360636 1_4:-10478855 Msa0149630:CDS
TGAAGAGGCTGAAGTAGAAA+TGG 0.361449 1_4:-10481524 Msa0149630:CDS
GCCCGATGATCCTGAAATCT+TGG 0.362644 1_4:-10483939 Msa0149630:intron
GGAAAAGTATTGGATTGTTT+GGG 0.362912 1_4:-10479746 Msa0149630:CDS
TTGGTTCGTGGTATATTGTA+TGG 0.364756 1_4:+10478765 None:intergenic
GTCAACAAGTTATATACATT+TGG 0.380037 1_4:+10476710 None:intergenic
CCTTTATTTGCAGCTTATGT+TGG 0.380058 1_4:-10482244 Msa0149630:intron
AAGAAGGAGATTATTGGAAA+TGG 0.383365 1_4:+10484292 None:intergenic
TGTCCCAATGGCAATGAAAC+TGG 0.386115 1_4:-10482564 Msa0149630:CDS
GTTGTTGAATGCGACGGAAT+AGG 0.387795 1_4:+10484171 None:intergenic
CTTTATTTGCAGCTTATGTT+GGG 0.398548 1_4:-10482243 Msa0149630:intron
TGAAGGGAGGGTGGCGGAGA+AGG 0.413952 1_4:+10484242 None:intergenic
TCATGTTTCATATATTAAAA+GGG 0.415673 1_4:+10476891 None:intergenic
TGAAACATGATAGAAAATTC+AGG 0.417509 1_4:-10476878 Msa0149630:three_prime_UTR
TCTTCTTCCTCTTCGGCGTT+CGG 0.418770 1_4:+10484005 None:intergenic
AAAGAGACACGGCGAGGAGG+AGG 0.419639 1_4:+10484118 None:intergenic
GACAAGGTCGGGAAATATAT+AGG 0.421336 1_4:-10479392 Msa0149630:CDS
AAAAGAAATGATAAATGATC+TGG 0.428380 1_4:-10484428 Msa0149630:five_prime_UTR
GAGACACGGCGAGGAGGAGG+AGG 0.428702 1_4:+10484121 None:intergenic
TTATTATCTATCATATTAAA+CGG 0.430988 1_4:+10476827 None:intergenic
CTGGCATTTGATGGTTTGAA+AGG 0.435654 1_4:-10482545 Msa0149630:CDS
CAGAAAATATAGCTGAACTT+TGG 0.435697 1_4:+10481210 None:intergenic
AAAGCTGTGGCAAACGCAAT+TGG 0.436884 1_4:-10477179 Msa0149630:CDS
TTTGTTGCATCTGACCAGTA+TGG 0.437315 1_4:+10478178 None:intergenic
AAAAGTGCTGCTTGATCACT+TGG 0.439349 1_4:-10478077 Msa0149630:CDS
GGTACAATTTCCAGCATGTC+TGG 0.440193 1_4:+10478127 None:intergenic
TTTAAGAAGGTGGATTTAGC+TGG 0.441156 1_4:-10480794 Msa0149630:CDS
AATTGCGTTTGCCACAGCTT+TGG 0.449220 1_4:+10477181 None:intergenic
CTTTCGTTTCTCGGCTTAGC+GGG 0.450522 1_4:+10484351 None:intergenic
AACTTACACCTCTGTAGAAA+GGG 0.453153 1_4:+10477072 None:intergenic
CATGCTGGAAATTGTACCCT+TGG 0.454073 1_4:-10478122 Msa0149630:CDS
TCTGGCATCTGCTGACATAC+AGG 0.454582 1_4:-10478627 Msa0149630:intron
AATGCCAGTTTCATTGCCAT+TGG 0.454647 1_4:+10482560 None:intergenic
TGTTTATGGTAGACAAGGTC+GGG 0.459418 1_4:-10479403 Msa0149630:CDS
CGGAATAGGAATGGGATTGA+GGG 0.461244 1_4:+10484185 None:intergenic
TTAGGCATTGCACTGAGTAA+TGG 0.461385 1_4:-10477215 Msa0149630:CDS
GCAATGAAACTGGCATTTGA+TGG 0.464043 1_4:-10482554 Msa0149630:CDS
TCCAACCAAGACTTTGCAAA+AGG 0.464603 1_4:+10481485 None:intergenic
AGTCTTGGTTGGAAAGGAAA+AGG 0.470726 1_4:-10481475 Msa0149630:CDS
GCAAGACAAGCAGAGGAAAG+AGG 0.471221 1_4:-10482192 Msa0149630:CDS
CAACTTACACCTCTGTAGAA+AGG 0.477937 1_4:+10477071 None:intergenic
ATGCCAGTTTCATTGCCATT+GGG 0.481316 1_4:+10482561 None:intergenic
TGATAGATAATAACCCTTGT+GGG 0.484192 1_4:-10476817 Msa0149630:three_prime_UTR
TCAGAATGCATATCGATAGA+TGG 0.486146 1_4:+10477124 None:intergenic
TACCCTTGGGAACATGTAAA+GGG 0.486391 1_4:-10478108 Msa0149630:CDS
GTACCCTTGGGAACATGTAA+AGG 0.489992 1_4:-10478109 Msa0149630:CDS
CTCTCTCTTTCCTCCTCCGT+CGG 0.491250 1_4:+10484045 None:intergenic
ACCAAGATTTCAGGATCATC+GGG 0.495844 1_4:+10483938 None:intergenic
CAAGACAAGCAGAGGAAAGA+GGG 0.496208 1_4:-10482191 Msa0149630:CDS
TTGTTTGGCAGGAAAAGTAT+TGG 0.496289 1_4:-10479756 Msa0149630:intron
TAGAGTTGAAGGGAGGGTGG+CGG 0.497018 1_4:+10484236 None:intergenic
AATGAGGTACCTTTGGTTCG+TGG 0.497341 1_4:+10478753 None:intergenic
ACGGAATAGGAATGGGATTG+AGG 0.497725 1_4:+10484184 None:intergenic
ATTATTGGAAATGGAAGCTA+TGG 0.501536 1_4:+10484301 None:intergenic
GCTGCACGTATTCCCCGAAA+TGG 0.504722 1_4:+10484067 None:intergenic
ACGTGACATGATAGAGTTGA+AGG 0.506790 1_4:+10484225 None:intergenic
AACCAAGATTTCAGGATCAT+CGG 0.508129 1_4:+10483937 None:intergenic
TGAGGCCTCTCTCAAAGCCT+TGG 0.508435 1_4:+10481052 None:intergenic
GATATGCAGATAATGGCTAT+TGG 0.510832 1_4:-10477278 Msa0149630:intron
GTGGATTTAGCTGGAAAAGA+TGG 0.511679 1_4:-10480785 Msa0149630:CDS
ATTACCTCTCGACAGACGTC+CGG 0.513505 1_4:+10479357 None:intergenic
TTGCAAAGTCTTGGTTGGAA+AGG 0.513697 1_4:-10481481 Msa0149630:CDS
GGTTTAAGCAACGATGAAGA+TGG 0.514129 1_4:-10477158 Msa0149630:CDS
ATATAGGAGCAGCTTAGATC+CGG 0.515316 1_4:-10479376 Msa0149630:CDS
CGGATACATTACGTCCATAC+TGG 0.518060 1_4:-10478192 Msa0149630:CDS
TCAGAAGCCGAACGCCGAAG+AGG 0.519206 1_4:-10484012 Msa0149630:CDS
TTTCGCGAAGGAAAATGAAT+GGG 0.521861 1_4:+10477023 None:intergenic
CTTGGGAGTTACTGCTAATG+AGG 0.523463 1_4:-10478059 Msa0149630:intron
GTCAAAGACAGGAAGAAAGA+AGG 0.523896 1_4:-10481252 Msa0149630:intron
GTCTTGGTTGGAAAGGAAAA+GGG 0.525732 1_4:-10481474 Msa0149630:CDS
CTGCTATAGATGATGTTGGC+AGG 0.526203 1_4:-10482499 Msa0149630:CDS
TTTGAGAGAGGCCTCAGCAA+GGG 0.528767 1_4:-10481045 Msa0149630:CDS
GGGAACAATGCTTTGAGCAG+TGG 0.533362 1_4:-10479726 Msa0149630:CDS
CGGCTTAGCGGGAGATGCAA+TGG 0.536046 1_4:+10484362 None:intergenic
GTGAAAATTGTGATAGCCAC+TGG 0.536129 1_4:-10481020 Msa0149630:CDS
ATACGTGCAGCCGACGGAGG+AGG 0.536167 1_4:-10484055 Msa0149630:CDS
GTTCCCTTTACATGTTCCCA+AGG 0.536704 1_4:+10478105 None:intergenic
CCTTCACAAAATGCAATAAG+TGG 0.536888 1_4:+10478830 None:intergenic
TACTGGTCAGATGCAACAAA+AGG 0.539035 1_4:-10478175 Msa0149630:CDS
AATTTCTACTTCAACTGCCA+AGG 0.539368 1_4:-10481069 Msa0149630:CDS
TGATGAGATCCGTATCCTCA+TGG 0.539656 1_4:-10482157 Msa0149630:intron
TCAAGCTGTACCAGACATGC+TGG 0.541670 1_4:-10478137 Msa0149630:CDS
TAAAACCAACCATGAGGATA+CGG 0.541816 1_4:+10482148 None:intergenic
GAATGCGACGGAATAGGAAT+GGG 0.544042 1_4:+10484177 None:intergenic
GAAATGGAAGCTATGGCCTA+TGG 0.544426 1_4:+10484308 None:intergenic
ATGCTGGAAATTGTACCCTT+GGG 0.548664 1_4:-10478121 Msa0149630:CDS
GTAATGTATCCGACACACTC+TGG 0.552692 1_4:+10478203 None:intergenic
TGAATGCGACGGAATAGGAA+TGG 0.553354 1_4:+10484176 None:intergenic
GCCAGAAGATCTTCAACAGA+AGG 0.554050 1_4:+10478644 None:intergenic
TTGTTTATGGTAGACAAGGT+CGG 0.557920 1_4:-10479404 Msa0149630:CDS
CCAAAAGATGTAACAAGCCA+TGG 0.561789 1_4:+10481566 None:intergenic
AACTGCCAAGGCTTTGAGAG+AGG 0.562759 1_4:-10481057 Msa0149630:CDS
TGATCATGAATTAAGTGAAG+AGG 0.564233 1_4:-10481539 Msa0149630:CDS
TAATGTATCCGACACACTCT+GGG 0.564410 1_4:+10478204 None:intergenic
GCTTTCGTTTCTCGGCTTAG+CGG 0.567166 1_4:+10484350 None:intergenic
AGGAAGCATGAAGAAGAAGA+AGG 0.568819 1_4:+10484276 None:intergenic
TCAATGTCACAACATGAACC+TGG 0.570480 1_4:-10482377 Msa0149630:CDS
GATACTGCTATAGATGATGT+TGG 0.571424 1_4:-10482503 Msa0149630:CDS
CATGTTTCATATATTAAAAG+GGG 0.572224 1_4:+10476892 None:intergenic
TTGAGAGAGGCCTCAGCAAG+GGG 0.575910 1_4:-10481044 Msa0149630:CDS
GAGGAGGAAAGAGAGAGTAT+CGG 0.580158 1_4:-10484039 Msa0149630:CDS
ATGATAGATAATAACCCTTG+TGG 0.582154 1_4:-10476818 Msa0149630:three_prime_UTR
TCCCACCAAAACAGTTCAGA+TGG 0.584076 1_4:-10481412 Msa0149630:intron
ATTGCATTCCCTTTCTACAG+AGG 0.586020 1_4:-10477080 Msa0149630:three_prime_UTR
AACGCCGAAGAGGAAGAAGA+AGG 0.587913 1_4:-10484002 Msa0149630:CDS
TTCCCTTTACATGTTCCCAA+GGG 0.592459 1_4:+10478106 None:intergenic
ACAATAGGAAGATTGAGTCC+AGG 0.593719 1_4:+10482359 None:intergenic
GCAAAAGAGACACGGCGAGG+AGG 0.596444 1_4:+10484115 None:intergenic
AGTAGAAATGGAGAAAGAAG+AGG 0.597908 1_4:-10481512 Msa0149630:CDS
GGAGGAGGAGAGTTACAGAA+AGG 0.599414 1_4:+10484136 None:intergenic
TATGCATTCTGAGCAGCTGA+AGG 0.600572 1_4:-10477113 Msa0149630:exon
GACAGCAGCAAGACAAGCAG+AGG 0.601250 1_4:-10482199 Msa0149630:CDS
TGATGTAGAGATGCTTGAGC+TGG 0.601463 1_4:-10477243 Msa0149630:CDS
CGGGGAATACGTGCAGCCGA+CGG 0.602788 1_4:-10484061 Msa0149630:CDS
AACGAAAGCAACATTGCTGA+AGG 0.603225 1_4:-10484336 Msa0149630:five_prime_UTR
CTTTGAGAGAGGCCTCAGCA+AGG 0.603249 1_4:-10481046 Msa0149630:CDS
CAGATAATGGCTATTGGTGA+TGG 0.605598 1_4:-10477272 Msa0149630:CDS
CTCATCATTACAAAGAAGCA+CGG 0.607621 1_4:+10482457 None:intergenic
TTGCTTGTTTATGGTAGACA+AGG 0.609418 1_4:-10479408 Msa0149630:CDS
TACAATATACCACGAACCAA+AGG 0.612220 1_4:-10478762 Msa0149630:intron
GGAATACGTGCAGCCGACGG+AGG 0.618353 1_4:-10484058 Msa0149630:CDS
TGCATATCGATAGATGGCGT+CGG 0.621958 1_4:+10477130 None:intergenic
ATTGCTGAAGGATTAGCCAT+AGG 0.624909 1_4:-10484324 Msa0149630:five_prime_UTR
GACATGATAGAGTTGAAGGG+AGG 0.627093 1_4:+10484229 None:intergenic
AGATCCGGACGTCTGTCGAG+AGG 0.628487 1_4:-10479361 Msa0149630:intron
TTGAGGGAGAGAGCACGTGA+TGG 0.631396 1_4:+10484201 None:intergenic
GGCGGCGTTGTTGAATGCGA+CGG 0.632867 1_4:+10484165 None:intergenic
CCAGAAGATCTTCAACAGAA+GGG 0.634354 1_4:+10478645 None:intergenic
CGGAGAAGGTTAGAGAAACG+AGG 0.635386 1_4:+10484256 None:intergenic
GATAGATAATAACCCTTGTG+GGG 0.640619 1_4:-10476816 Msa0149630:three_prime_UTR
GCTTCGTCTAAATGTCCCAA+TGG 0.644543 1_4:-10482576 Msa0149630:CDS
ACATGATAGAGTTGAAGGGA+GGG 0.644964 1_4:+10484230 None:intergenic
TTGGGAACATGTAAAGGGAA+CGG 0.644997 1_4:-10478103 Msa0149630:CDS
GTATGGAGTGAATCAACAAG+TGG 0.650294 1_4:+10478782 None:intergenic
CGTGACATGATAGAGTTGAA+GGG 0.657532 1_4:+10484226 None:intergenic
CAGCAATTGCAACCATTTCG+GGG 0.658853 1_4:-10484079 Msa0149630:CDS
TGATAGAGTTGAAGGGAGGG+TGG 0.661487 1_4:+10484233 None:intergenic
AGACACTGCCCAGAGTGTGT+CGG 0.664859 1_4:-10478212 Msa0149630:CDS
ATCAGAGAAGACCAAAGCTG+TGG 0.670500 1_4:-10477192 Msa0149630:CDS
AAATTGTAATGATCCCCACA+AGG 0.673577 1_4:+10476803 None:intergenic
TGAAAAGCGCAAAAGAGACA+CGG 0.674363 1_4:+10484107 None:intergenic
AATTGTAATGATCCCCACAA+GGG 0.675744 1_4:+10476804 None:intergenic
AGCGCAAAAGAGACACGGCG+AGG 0.682613 1_4:+10484112 None:intergenic
AAAGTGCTGCTTGATCACTT+GGG 0.694800 1_4:-10478076 Msa0149630:CDS
TGGTACAGCTTGAACAACAG+TGG 0.699418 1_4:+10478147 None:intergenic
AGAGTTACAGAAAGGAACGA+CGG 0.726251 1_4:+10484144 None:intergenic
GTTACAGAAAGGAACGACGG+CGG 0.740877 1_4:+10484147 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATAAATATAAATATAT+AGG - chr1_4:10481080-10481099 Msa0149630:CDS 0.0%
!! TCAATTAAAAACAAAAAAAA+AGG + chr1_4:10480014-10480033 None:intergenic 10.0%
!! AAGAAAAATATAATAAAACA+AGG + chr1_4:10480761-10480780 None:intergenic 10.0%
!! TTTACAAATAAAGTAATTAA+AGG - chr1_4:10481188-10481207 Msa0149630:intron 10.0%
!! TATAAATTATACTATAATTG+AGG + chr1_4:10482570-10482589 None:intergenic 10.0%
!! AGAAAAAAAATATAATTCTA+AGG + chr1_4:10482695-10482714 None:intergenic 10.0%
!! TTATTATCTATCATATTAAA+CGG + chr1_4:10484322-10484341 None:intergenic 10.0%
!!! TTATTAGTTTCATAAAGTTT+AGG - chr1_4:10477839-10477858 Msa0149630:intron 15.0%
!!! TATTAGTTTCATAAAGTTTA+GGG - chr1_4:10477840-10477859 Msa0149630:intron 15.0%
!!! TTTATTTTCTTTCTCATAAA+TGG - chr1_4:10477943-10477962 Msa0149630:intron 15.0%
!! TTTAATATTTAGAGATGAAA+AGG - chr1_4:10478153-10478172 Msa0149630:CDS 15.0%
!!! AAAAATTTAGAATTGAATAG+AGG - chr1_4:10478230-10478249 Msa0149630:intron 15.0%
!!! TTATTTTCATTAACAAAAGT+TGG - chr1_4:10479142-10479161 Msa0149630:intron 15.0%
!! AAAACAAAAAAAAAGGATAA+TGG + chr1_4:10480007-10480026 None:intergenic 15.0%
!! AAAATAAATAGCTTAAAACA+TGG + chr1_4:10480190-10480209 None:intergenic 15.0%
!!! CAATTTTTCTAATATAAATG+TGG - chr1_4:10480250-10480269 Msa0149630:intron 15.0%
!!! TTAAGTATCATATATCTTTT+TGG - chr1_4:10481499-10481518 Msa0149630:CDS 15.0%
!! TTTCAGAATATATATACTTT+AGG + chr1_4:10482200-10482219 None:intergenic 15.0%
!! TTATTATGTTAACTCAAATA+TGG + chr1_4:10483213-10483232 None:intergenic 15.0%
!!! TAAAATTGATGTCATATTTT+AGG + chr1_4:10483621-10483640 None:intergenic 15.0%
!! TCATGTTTCATATATTAAAA+GGG + chr1_4:10484258-10484277 None:intergenic 15.0%
!! ATCATGTTTCATATATTAAA+AGG + chr1_4:10484259-10484278 None:intergenic 15.0%
!!! AGATCATTTATCATTTCTTT+TGG + chr1_4:10476719-10476738 None:intergenic 20.0%
!! AAAAGAAATGATAAATGATC+TGG - chr1_4:10476718-10476737 Msa0149630:three_prime_UTR 20.0%
!! TAGTAATCAAACGATTATTT+AGG - chr1_4:10477318-10477337 Msa0149630:intron 20.0%
!! TAAGTGATTAATAATTCTGA+TGG - chr1_4:10477397-10477416 Msa0149630:intron 20.0%
!! AAGATACAATTACATTATGT+TGG - chr1_4:10477587-10477606 Msa0149630:intron 20.0%
!! GGAAAATAAAAAGAATATCT+TGG - chr1_4:10477608-10477627 Msa0149630:intron 20.0%
!!! GAATATCTTGGTATTTTTAA+TGG - chr1_4:10477620-10477639 Msa0149630:intron 20.0%
!! TTACAATCAACACAAAATAA+AGG + chr1_4:10478009-10478028 None:intergenic 20.0%
!!! ATTTTGTGTTGATTGTAATA+AGG - chr1_4:10478011-10478030 Msa0149630:intron 20.0%
!! TGTTAGAAAAAAATGATAAC+AGG - chr1_4:10478313-10478332 Msa0149630:intron 20.0%
!!! ATTAATTTGAAGCTTGAAAT+AGG - chr1_4:10478353-10478372 Msa0149630:intron 20.0%
!!! TTAATTTGAAGCTTGAAATA+GGG - chr1_4:10478354-10478373 Msa0149630:intron 20.0%
!!! CTACTTTATTCATTCTTTTT+TGG - chr1_4:10478510-10478529 Msa0149630:intron 20.0%
!! GTTTATACAAAAACTTAACA+AGG - chr1_4:10478711-10478730 Msa0149630:intron 20.0%
!!! TTAATTTCTCTCTTTTGAAA+TGG + chr1_4:10479232-10479251 None:intergenic 20.0%
!! CTGAAAAAAAGATTAAAATG+AGG + chr1_4:10479558-10479577 None:intergenic 20.0%
!!! CTCATTTTAATCTTTTTTTC+AGG - chr1_4:10479556-10479575 Msa0149630:intron 20.0%
!! CATTTGCACAAAAAAAATAT+GGG - chr1_4:10479847-10479866 Msa0149630:intron 20.0%
!! ATTTGCACAAAAAAAATATG+GGG - chr1_4:10479848-10479867 Msa0149630:intron 20.0%
!! TTGAATCCTGTATTATATAA+AGG - chr1_4:10480030-10480049 Msa0149630:intron 20.0%
!! AATGTTCCTTTATATAATAC+AGG + chr1_4:10480039-10480058 None:intergenic 20.0%
!! TATAAATGTGGATATTCATA+TGG - chr1_4:10480262-10480281 Msa0149630:intron 20.0%
!! TAATTTGAACATTGTGAATT+AGG - chr1_4:10480306-10480325 Msa0149630:intron 20.0%
!!! TGTGATAGATATTTTTAAGA+AGG - chr1_4:10480339-10480358 Msa0149630:intron 20.0%
!! TATTTAACTATTACAGTCTT+TGG + chr1_4:10480976-10480995 None:intergenic 20.0%
!! AGATATATGATACTTAAAAG+CGG + chr1_4:10481496-10481515 None:intergenic 20.0%
!!! TGTTTTTTGTTTTTCTCATT+GGG + chr1_4:10482075-10482094 None:intergenic 20.0%
!!! ATGTTTTTTGTTTTTCTCAT+TGG + chr1_4:10482076-10482095 None:intergenic 20.0%
!!! TTTTTGTTATGTAGAAAACT+GGG + chr1_4:10482146-10482165 None:intergenic 20.0%
!! TTAAGAGAAAAATACTTTAC+AGG - chr1_4:10482468-10482487 Msa0149630:CDS 20.0%
!!! GACATCAATTTTATTTTACA+AGG - chr1_4:10483628-10483647 Msa0149630:intron 20.0%
!! AATTTAGTCCTTGAAATATT+TGG + chr1_4:10483670-10483689 None:intergenic 20.0%
!! TGCATTGAATAAGATTATTT+AGG - chr1_4:10483783-10483802 Msa0149630:intron 20.0%
!! TATCTGCATATCATAAATTT+GGG + chr1_4:10483860-10483879 None:intergenic 20.0%
!! TTATCTGCATATCATAAATT+TGG + chr1_4:10483861-10483880 None:intergenic 20.0%
!! AATTTATGATATGCAGATAA+TGG - chr1_4:10483861-10483880 Msa0149630:intron 20.0%
!!! TGTCATTTATTTGTCATTAT+TGG - chr1_4:10484171-10484190 Msa0149630:CDS 20.0%
!! CATGTTTCATATATTAAAAG+GGG + chr1_4:10484257-10484276 None:intergenic 20.0%
! GATAAATGATCTGGAAAAAT+TGG - chr1_4:10476727-10476746 Msa0149630:three_prime_UTR 25.0%
!! AATTTTCTTCGATGCAAATA+GGG + chr1_4:10477186-10477205 None:intergenic 25.0%
!! AAATTTTCTTCGATGCAAAT+AGG + chr1_4:10477187-10477206 None:intergenic 25.0%
! TATATAGAGAAGAGATACTA+AGG - chr1_4:10477749-10477768 Msa0149630:intron 25.0%
! ATAAAGTTTAGGGACTAAAT+AGG - chr1_4:10477850-10477869 Msa0149630:intron 25.0%
!! TTTTCTTTCTCATAAATGGA+TGG - chr1_4:10477947-10477966 Msa0149630:intron 25.0%
! TAAATATTAAAACCTCCTTG+GGG + chr1_4:10478144-10478163 None:intergenic 25.0%
! CTAAATATTAAAACCTCCTT+GGG + chr1_4:10478145-10478164 None:intergenic 25.0%
! TCTAAATATTAAAACCTCCT+TGG + chr1_4:10478146-10478165 None:intergenic 25.0%
! TACAAAAACTTAACAAGGAA+TGG - chr1_4:10478716-10478735 Msa0149630:intron 25.0%
! GAAAATGCAATTCTTACAAT+AGG + chr1_4:10478805-10478824 None:intergenic 25.0%
!! ACTTATGAATTATGATGATG+AGG + chr1_4:10478830-10478849 None:intergenic 25.0%
! ATATTATAAAACCAACCATG+AGG + chr1_4:10479007-10479026 None:intergenic 25.0%
! TGCACTTACTTACTAAATAA+TGG - chr1_4:10479284-10479303 Msa0149630:intron 25.0%
!! TTTCATTTTCTTCTACTTGT+GGG - chr1_4:10479422-10479441 Msa0149630:intron 25.0%
! ATAAAACCAAAATACCATAC+TGG + chr1_4:10479800-10479819 None:intergenic 25.0%
!!! TATTTTTTTTGTGCAAATGG+AGG + chr1_4:10479846-10479865 None:intergenic 25.0%
!!! CCATATTTTTTTTGTGCAAA+TGG + chr1_4:10479849-10479868 None:intergenic 25.0%
! CCATTTGCACAAAAAAAATA+TGG - chr1_4:10479846-10479865 Msa0149630:intron 25.0%
! TTTGCACAAAAAAAATATGG+GGG - chr1_4:10479849-10479868 Msa0149630:intron 25.0%
! ATAAATGAATTGTCAAAGAC+AGG - chr1_4:10479883-10479902 Msa0149630:intron 25.0%
!! TATATTTTCTGTGATATGGA+TGG - chr1_4:10479948-10479967 Msa0149630:intron 25.0%
! TTAAAAATATCTATCACAGC+TGG + chr1_4:10480337-10480356 None:intergenic 25.0%
!!! GATAGATATTTTTAAGAAGG+TGG - chr1_4:10480342-10480361 Msa0149630:intron 25.0%
! ATCCAAACAAATATCCTTTA+TGG + chr1_4:10480676-10480695 None:intergenic 25.0%
! TAATTAAAGGCTATGAATGA+AGG - chr1_4:10481201-10481220 Msa0149630:CDS 25.0%
!! TATCAGAAACTACATTTTGT+TGG + chr1_4:10481621-10481640 None:intergenic 25.0%
! TTGTTACGAAAAACTGAAAA+AGG + chr1_4:10481827-10481846 None:intergenic 25.0%
! ATAATGTTTCATAAGCAATG+GGG + chr1_4:10481950-10481969 None:intergenic 25.0%
! CATAATGTTTCATAAGCAAT+GGG + chr1_4:10481951-10481970 None:intergenic 25.0%
! TGTAGTCAATGAACATAATA+TGG + chr1_4:10482025-10482044 None:intergenic 25.0%
!!! CTTTTTGTTATGTAGAAAAC+TGG + chr1_4:10482147-10482166 None:intergenic 25.0%
! TAGAATGTAAGCAATCATAT+AGG + chr1_4:10482427-10482446 None:intergenic 25.0%
! ATCTTGCTAACAATTACATT+TGG - chr1_4:10482889-10482908 Msa0149630:intron 25.0%
!! TTTTGTGATCATATTTCACA+CGG - chr1_4:10483303-10483322 Msa0149630:intron 25.0%
! AATATAAAGCAAACATCACA+AGG + chr1_4:10483557-10483576 None:intergenic 25.0%
! AACATGAACCAAATATTTCA+AGG - chr1_4:10483659-10483678 Msa0149630:intron 25.0%
! ATCTGCATATCATAAATTTG+GGG + chr1_4:10483859-10483878 None:intergenic 25.0%
!!! ATACCCCTGATTAATTTTTT+TGG - chr1_4:10484098-10484117 Msa0149630:CDS 25.0%
! GAACCAAAAAAATTAATCAG+GGG + chr1_4:10484104-10484123 None:intergenic 25.0%
! GGAACCAAAAAAATTAATCA+GGG + chr1_4:10484105-10484124 None:intergenic 25.0%
! TGAAACATGATAGAAAATTC+AGG - chr1_4:10484268-10484287 Msa0149630:exon 25.0%
! GTCAACAAGTTATATACATT+TGG + chr1_4:10484439-10484458 None:intergenic 25.0%
ATTATTGGAAATGGAAGCTA+TGG + chr1_4:10476848-10476867 None:intergenic 30.0%
AAGAAGGAGATTATTGGAAA+TGG + chr1_4:10476857-10476876 None:intergenic 30.0%
AAGAAGAAGAAGGAGATTAT+TGG + chr1_4:10476863-10476882 None:intergenic 30.0%
AAGTAACTAACCAAGATTTC+AGG + chr1_4:10477220-10477239 None:intergenic 30.0%
ACTACTAGAACTAATAGAGT+GGG + chr1_4:10477302-10477321 None:intergenic 30.0%
TACTACTAGAACTAATAGAG+TGG + chr1_4:10477303-10477322 None:intergenic 30.0%
GATAGAAATAATCACTCAAG+AGG - chr1_4:10477368-10477387 Msa0149630:intron 30.0%
ACCATCAATTTAGTCTCTAA+AGG - chr1_4:10477495-10477514 Msa0149630:intron 30.0%
! TCCTTTAGAGACTAAATTGA+TGG + chr1_4:10477499-10477518 None:intergenic 30.0%
GAAATCCATCAAATTAGTTC+CGG - chr1_4:10477720-10477739 Msa0149630:intron 30.0%
TCTTCTCTATATATAAGAGC+CGG + chr1_4:10477742-10477761 None:intergenic 30.0%
!! GACGGATTTTGTATAGTTTA+AGG - chr1_4:10477780-10477799 Msa0149630:intron 30.0%
AAACAATATGAAATCCGTCA+AGG + chr1_4:10477810-10477829 None:intergenic 30.0%
! TGTTGATTGTAATAAGGCAA+GGG - chr1_4:10478017-10478036 Msa0149630:intron 30.0%
AAATCACTAGAGCAGTTAAT+TGG + chr1_4:10478065-10478084 None:intergenic 30.0%
!!! AGTGACTTCTTGTTTTCATT+CGG - chr1_4:10478193-10478212 Msa0149630:CDS 30.0%
AAGTCATGTGAAATAGTTTG+TGG - chr1_4:10478402-10478421 Msa0149630:intron 30.0%
! AGTCATGTGAAATAGTTTGT+GGG - chr1_4:10478403-10478422 Msa0149630:intron 30.0%
! TATGAATTATGATGATGAGG+TGG + chr1_4:10478827-10478846 None:intergenic 30.0%
ATACAAACTTGCAACTTAGA+TGG - chr1_4:10478850-10478869 Msa0149630:CDS 30.0%
! CTTTATTTGCAGCTTATGTT+GGG - chr1_4:10478903-10478922 Msa0149630:intron 30.0%
TAAGTGCATTTGAAAGTTCT+TGG + chr1_4:10479272-10479291 None:intergenic 30.0%
CTCGAGTAGAAATAAATTGT+TGG - chr1_4:10479360-10479379 Msa0149630:intron 30.0%
! GTTTCATTTTCTTCTACTTG+TGG - chr1_4:10479421-10479440 Msa0149630:intron 30.0%
! TTCATTTTCTTCTACTTGTG+GGG - chr1_4:10479423-10479442 Msa0149630:intron 30.0%
!!! TAATCTTTTTTTCAGGTCCA+TGG - chr1_4:10479563-10479582 Msa0149630:intron 30.0%
TGATCATGAATTAAGTGAAG+AGG - chr1_4:10479607-10479626 Msa0149630:intron 30.0%
! AATTACCATCTGAACTGTTT+TGG + chr1_4:10479742-10479761 None:intergenic 30.0%
CAGAAAATATAGCTGAACTT+TGG + chr1_4:10479939-10479958 None:intergenic 30.0%
! CAGCTATATTTTCTGTGATA+TGG - chr1_4:10479944-10479963 Msa0149630:intron 30.0%
ATGGTATTCTGACAAATCAT+GGG + chr1_4:10480171-10480190 None:intergenic 30.0%
! ATTGTTTCAGAATTTTCTCC+TGG - chr1_4:10480385-10480404 Msa0149630:intron 30.0%
! TTGTTTCAGAATTTTCTCCT+GGG - chr1_4:10480386-10480405 Msa0149630:intron 30.0%
GAGATATTCGATGACAATTA+TGG - chr1_4:10480650-10480669 Msa0149630:intron 30.0%
AGAAACAGAATAGAGTAAGA+TGG - chr1_4:10481310-10481329 Msa0149630:intron 30.0%
!! AGGAAAAGTATTGGATTGTT+TGG - chr1_4:10481399-10481418 Msa0149630:intron 30.0%
!! GGAAAAGTATTGGATTGTTT+GGG - chr1_4:10481400-10481419 Msa0149630:intron 30.0%
TTGGAGATAACTTAATCTCT+TGG - chr1_4:10481518-10481537 Msa0149630:CDS 30.0%
ATGATAGAAACTGTGATAGT+GGG + chr1_4:10481661-10481680 None:intergenic 30.0%
AATGATAGAAACTGTGATAG+TGG + chr1_4:10481662-10481681 None:intergenic 30.0%
TACGAAAAACTGAAAAAGGA+GGG + chr1_4:10481823-10481842 None:intergenic 30.0%
TTACGAAAAACTGAAAAAGG+AGG + chr1_4:10481824-10481843 None:intergenic 30.0%
AATAAAGTCCAAAACGACAA+AGG + chr1_4:10481884-10481903 None:intergenic 30.0%
CCATAATGTTTCATAAGCAA+TGG + chr1_4:10481952-10481971 None:intergenic 30.0%
CCATTGCTTATGAAACATTA+TGG - chr1_4:10481949-10481968 Msa0149630:intron 30.0%
GAACATAATATGGCTATTGA+GGG + chr1_4:10482015-10482034 None:intergenic 30.0%
TGAACATAATATGGCTATTG+AGG + chr1_4:10482016-10482035 None:intergenic 30.0%
! TGTTTTTCTCATTGGGTAAA+AGG + chr1_4:10482068-10482087 None:intergenic 30.0%
!!! TCTGAAATGTCATTTTTTGC+AGG - chr1_4:10482213-10482232 Msa0149630:CDS 30.0%
AACAAGTGGATCATGAAAAA+GGG + chr1_4:10482353-10482372 None:intergenic 30.0%
TATTCACTGTTCTCTATTGA+AGG - chr1_4:10482605-10482624 Msa0149630:intron 30.0%
CAGTCAATACAAACTTGTAT+GGG + chr1_4:10482793-10482812 None:intergenic 30.0%
! TTTTATTGCAGTTGTCTTTG+AGG + chr1_4:10482824-10482843 None:intergenic 30.0%
GACAACAAAATAAATGTGTG+AGG + chr1_4:10483132-10483151 None:intergenic 30.0%
! TTGTCTTTTTCTCTCAAACT+CGG - chr1_4:10483147-10483166 Msa0149630:intron 30.0%
TTGGTATCATACATATAGAG+TGG - chr1_4:10483185-10483204 Msa0149630:intron 30.0%
ATGATCACAAAATCATGTCA+TGG + chr1_4:10483295-10483314 None:intergenic 30.0%
ATGTAGTATGATTGCTAATG+AGG - chr1_4:10483402-10483421 Msa0149630:intron 30.0%
TCACACGTACATAAACTAAA+AGG + chr1_4:10483461-10483480 None:intergenic 30.0%
!! GGTTTTAATCTCTGAAAAAC+AGG - chr1_4:10483494-10483513 Msa0149630:intron 30.0%
TCAAGGACTAAATTAGAACA+AGG - chr1_4:10483676-10483695 Msa0149630:intron 30.0%
AAATCCATCAATTGTGTTCA+TGG - chr1_4:10483732-10483751 Msa0149630:intron 30.0%
GGGAACCAAAAAAATTAATC+AGG + chr1_4:10484106-10484125 None:intergenic 30.0%
! TGCAATGTTTTCATGTCTAA+AGG - chr1_4:10484215-10484234 Msa0149630:CDS 30.0%
ATGATAGATAATAACCCTTG+TGG - chr1_4:10484328-10484347 Msa0149630:five_prime_UTR 30.0%
TGATAGATAATAACCCTTGT+GGG - chr1_4:10484329-10484348 Msa0149630:five_prime_UTR 30.0%
AACCAAGATTTCAGGATCAT+CGG + chr1_4:10477212-10477231 None:intergenic 35.0%
TGATAGTTCCCATATGAAGA+GGG - chr1_4:10477427-10477446 Msa0149630:intron 35.0%
ATTCTTTCTGTCTTAACCTC+TGG + chr1_4:10477469-10477488 None:intergenic 35.0%
GATACTAAGGACTAAAGAGA+CGG - chr1_4:10477762-10477781 Msa0149630:intron 35.0%
TAGTTTAAGGACTACCTTGA+CGG - chr1_4:10477793-10477812 Msa0149630:intron 35.0%
AGGAGTAAAAGTGATACTTG+AGG - chr1_4:10477870-10477889 Msa0149630:intron 35.0%
GGAGTAAAAGTGATACTTGA+GGG - chr1_4:10477871-10477890 Msa0149630:intron 35.0%
TACTTGAGGGACTAAATTGA+TGG - chr1_4:10477884-10477903 Msa0149630:intron 35.0%
!! GTGTTGATTGTAATAAGGCA+AGG - chr1_4:10478016-10478035 Msa0149630:intron 35.0%
GTTGATTGTAATAAGGCAAG+GGG - chr1_4:10478018-10478037 Msa0149630:intron 35.0%
! AATAGTTTGTGGGAACATCA+TGG - chr1_4:10478413-10478432 Msa0149630:intron 35.0%
GATACTGCTATAGATGATGT+TGG - chr1_4:10478643-10478662 Msa0149630:CDS 35.0%
CTCATCATTACAAAGAAGCA+CGG + chr1_4:10478692-10478711 None:intergenic 35.0%
AAAGGAATTCATCAAGCACT+TGG + chr1_4:10478887-10478906 None:intergenic 35.0%
CCAACATAAGCTGCAAATAA+AGG + chr1_4:10478905-10478924 None:intergenic 35.0%
! CCTTTATTTGCAGCTTATGT+TGG - chr1_4:10478902-10478921 Msa0149630:intron 35.0%
TAAAACCAACCATGAGGATA+CGG + chr1_4:10479001-10479020 None:intergenic 35.0%
TTGTGTTACACTTCTGCAAA+AGG - chr1_4:10479066-10479085 Msa0149630:intron 35.0%
GTTGAAGCTTGAGATACAAA+AGG - chr1_4:10479382-10479401 Msa0149630:CDS 35.0%
!!! CATGGCTTGTTACATCTTTT+GGG - chr1_4:10479581-10479600 Msa0149630:intron 35.0%
AGTAGAAATGGAGAAAGAAG+AGG - chr1_4:10479634-10479653 Msa0149630:intron 35.0%
! TGTGAACCAGTATGGTATTT+TGG - chr1_4:10479791-10479810 Msa0149630:intron 35.0%
AATTTCTACTTCAACTGCCA+AGG - chr1_4:10480077-10480096 Msa0149630:intron 35.0%
!! ACAACATCTTACTTTTCCAG+TGG + chr1_4:10480145-10480164 None:intergenic 35.0%
CATGGTATTCTGACAAATCA+TGG + chr1_4:10480172-10480191 None:intergenic 35.0%
! TTTAAGAAGGTGGATTTAGC+TGG - chr1_4:10480352-10480371 Msa0149630:intron 35.0%
! TGTTTCAGAATTTTCTCCTG+GGG - chr1_4:10480387-10480406 Msa0149630:intron 35.0%
ATTACCTGTAAAAAAACCCC+AGG + chr1_4:10480406-10480425 None:intergenic 35.0%
AAGTTGTCAACATTACTCAG+TGG - chr1_4:10480628-10480647 Msa0149630:intron 35.0%
GATGACAATTATGGCCATAA+AGG - chr1_4:10480659-10480678 Msa0149630:intron 35.0%
GGCCATAAAGGATATTTGTT+TGG - chr1_4:10480671-10480690 Msa0149630:intron 35.0%
AAGTTAGCAATTCCAGATAG+TGG - chr1_4:10480930-10480949 Msa0149630:intron 35.0%
AGTTAGCAATTCCAGATAGT+GGG - chr1_4:10480931-10480950 Msa0149630:intron 35.0%
! ATACTTTTCCTGCCAAACAA+GGG + chr1_4:10481390-10481409 None:intergenic 35.0%
! AATACTTTTCCTGCCAAACA+AGG + chr1_4:10481391-10481410 None:intergenic 35.0%
! TTGTTTGGCAGGAAAAGTAT+TGG - chr1_4:10481390-10481409 Msa0149630:intron 35.0%
TTGCTTGTTTATGGTAGACA+AGG - chr1_4:10481738-10481757 Msa0149630:intron 35.0%
TTGTTTATGGTAGACAAGGT+CGG - chr1_4:10481742-10481761 Msa0149630:intron 35.0%
!! CGTTTTGGACTTTATTGCAA+AGG - chr1_4:10481888-10481907 Msa0149630:intron 35.0%
! TTTATTGCAAAGGTTAGCTG+TGG - chr1_4:10481898-10481917 Msa0149630:intron 35.0%
TAAGCAATGGGGAAATAAAG+TGG + chr1_4:10481939-10481958 None:intergenic 35.0%
TTTGTGTTTCTTGTATGTGC+AGG - chr1_4:10482264-10482283 Msa0149630:intron 35.0%
! TCTTTACTCTTTGGAGAGTA+AGG - chr1_4:10482291-10482310 Msa0149630:intron 35.0%
CCTTCACAAAATGCAATAAG+TGG + chr1_4:10482319-10482338 None:intergenic 35.0%
! CCACTTATTGCATTTTGTGA+AGG - chr1_4:10482316-10482335 Msa0149630:intron 35.0%
CAACAAGTGGATCATGAAAA+AGG + chr1_4:10482354-10482373 None:intergenic 35.0%
! TTGGTTCGTGGTATATTGTA+TGG + chr1_4:10482384-10482403 None:intergenic 35.0%
TACAATATACCACGAACCAA+AGG - chr1_4:10482384-10482403 Msa0149630:CDS 35.0%
!! AACCAAAGGTACCTCATTAT+TGG - chr1_4:10482398-10482417 Msa0149630:CDS 35.0%
!! ACCAAAGGTACCTCATTATT+GGG - chr1_4:10482399-10482418 Msa0149630:CDS 35.0%
CATATAGGATCCCAATAATG+AGG + chr1_4:10482412-10482431 None:intergenic 35.0%
! TCTTTTTCCATACCAGGAAA+GGG - chr1_4:10482628-10482647 Msa0149630:intron 35.0%
AGGTGAAATGTCAAACTACA+AGG + chr1_4:10482675-10482694 None:intergenic 35.0%
GCAGTCAATACAAACTTGTA+TGG + chr1_4:10482794-10482813 None:intergenic 35.0%
GTGAGGTGAATAGATATTTG+TGG + chr1_4:10483115-10483134 None:intergenic 35.0%
TCGGAAAGTGAAAGTAAGAT+TGG - chr1_4:10483166-10483185 Msa0149630:intron 35.0%
GGAAAACATGTTGAATCTGA+TGG + chr1_4:10483274-10483293 None:intergenic 35.0%
ATTAATCATCCATTGAGCTG+AGG - chr1_4:10483347-10483366 Msa0149630:intron 35.0%
TTAATCATCCATTGAGCTGA+GGG - chr1_4:10483348-10483367 Msa0149630:intron 35.0%
GCAATCATACTACATTTGCA+TGG + chr1_4:10483397-10483416 None:intergenic 35.0%
ACGTGTGACACACTATTTAT+TGG - chr1_4:10483473-10483492 Msa0149630:intron 35.0%
! GCTTTCTGTCATCATTGTTT+TGG - chr1_4:10483524-10483543 Msa0149630:intron 35.0%
TTGTCCATGAACACAATTGA+TGG + chr1_4:10483739-10483758 None:intergenic 35.0%
! GATATGCAGATAATGGCTAT+TGG - chr1_4:10483868-10483887 Msa0149630:intron 35.0%
TCAGAATGCATATCGATAGA+TGG + chr1_4:10484025-10484044 None:intergenic 35.0%
AACTTACACCTCTGTAGAAA+GGG + chr1_4:10484077-10484096 None:intergenic 35.0%
TTTCGCGAAGGAAAATGAAT+GGG + chr1_4:10484126-10484145 None:intergenic 35.0%
! TTTTCGCGAAGGAAAATGAA+TGG + chr1_4:10484127-10484146 None:intergenic 35.0%
! ATTCATTTTCCTTCGCGAAA+AGG - chr1_4:10484126-10484145 Msa0149630:CDS 35.0%
TGGCTGTAACTCATTCATTA+AGG - chr1_4:10484191-10484210 Msa0149630:CDS 35.0%
! TGTTTTCATGTCTAAAGGCA+TGG - chr1_4:10484220-10484239 Msa0149630:CDS 35.0%
! GGCTGTTACTGTGAAATTTT+TGG - chr1_4:10484289-10484308 Msa0149630:five_prime_UTR 35.0%
GATAGATAATAACCCTTGTG+GGG - chr1_4:10484330-10484349 Msa0149630:five_prime_UTR 35.0%
AATTGTAATGATCCCCACAA+GGG + chr1_4:10484345-10484364 None:intergenic 35.0%
AAATTGTAATGATCCCCACA+AGG + chr1_4:10484346-10484365 None:intergenic 35.0%
! GTGGGGATCATTACAATTTT+TGG - chr1_4:10484347-10484366 Msa0149630:five_prime_UTR 35.0%
!!! ACTTGACAGCTCTAGTTTTA+TGG + chr1_4:10484387-10484406 None:intergenic 35.0%
!! GCAATGTTGCTTTCGTTTCT+CGG + chr1_4:10476807-10476826 None:intergenic 40.0%
AACGAAAGCAACATTGCTGA+AGG - chr1_4:10476810-10476829 Msa0149630:three_prime_UTR 40.0%
!! ATTGCTGAAGGATTAGCCAT+AGG - chr1_4:10476822-10476841 Msa0149630:three_prime_UTR 40.0%
! AGGAAGCATGAAGAAGAAGA+AGG + chr1_4:10476873-10476892 None:intergenic 40.0%
ACATGATAGAGTTGAAGGGA+GGG + chr1_4:10476919-10476938 None:intergenic 40.0%
CGTGACATGATAGAGTTGAA+GGG + chr1_4:10476923-10476942 None:intergenic 40.0%
ACGTGACATGATAGAGTTGA+AGG + chr1_4:10476924-10476943 None:intergenic 40.0%
AGAGTTACAGAAAGGAACGA+CGG + chr1_4:10477005-10477024 None:intergenic 40.0%
! TGAAAAGCGCAAAAGAGACA+CGG + chr1_4:10477042-10477061 None:intergenic 40.0%
ACCAGCAATTGCAACCATTT+CGG - chr1_4:10477065-10477084 Msa0149630:three_prime_UTR 40.0%
AACTCCTTCTTCTTCCTCTT+CGG + chr1_4:10477151-10477170 None:intergenic 40.0%
ACCAAGATTTCAGGATCATC+GGG + chr1_4:10477211-10477230 None:intergenic 40.0%
CTGATAGTTCCCATATGAAG+AGG - chr1_4:10477426-10477445 Msa0149630:intron 40.0%
AAGAGCCGGAACTAATTTGA+TGG + chr1_4:10477728-10477747 None:intergenic 40.0%
TTGTAATAAGGCAAGGGGAT+TGG - chr1_4:10478023-10478042 Msa0149630:intron 40.0%
!! AAGGGGATTGGTTGCATTTA+TGG - chr1_4:10478035-10478054 Msa0149630:intron 40.0%
TCACTAGAGCAGTTAATTGG+TGG + chr1_4:10478062-10478081 None:intergenic 40.0%
! GTTACTTTGAATGTTCCCCA+AGG - chr1_4:10478126-10478145 Msa0149630:CDS 40.0%
ATGCCAGTTTCATTGCCATT+GGG + chr1_4:10478588-10478607 None:intergenic 40.0%
AATGCCAGTTTCATTGCCAT+TGG + chr1_4:10478589-10478608 None:intergenic 40.0%
GCAATGAAACTGGCATTTGA+TGG - chr1_4:10478592-10478611 Msa0149630:intron 40.0%
! CTGGCATTTGATGGTTTGAA+AGG - chr1_4:10478601-10478620 Msa0149630:intron 40.0%
TCAATGTCACAACATGAACC+TGG - chr1_4:10478769-10478788 Msa0149630:CDS 40.0%
ACAATAGGAAGATTGAGTCC+AGG + chr1_4:10478790-10478809 None:intergenic 40.0%
TTCATCAAGCACTTGGCAAT+TGG + chr1_4:10478880-10478899 None:intergenic 40.0%
TTACACTTCTGCAAAAGGCA+TGG - chr1_4:10479071-10479090 Msa0149630:intron 40.0%
GAAGCTTGAGATACAAAAGG+TGG - chr1_4:10479385-10479404 Msa0149630:CDS 40.0%
ACAAAAGGTGGAAAGCAAAC+TGG - chr1_4:10479397-10479416 Msa0149630:CDS 40.0%
ACAACATGAGATGAGCATGT+TGG - chr1_4:10479466-10479485 Msa0149630:intron 40.0%
TGTACAGCATAACACTGTCT+TGG + chr1_4:10479503-10479522 None:intergenic 40.0%
CCAAAAGATGTAACAAGCCA+TGG + chr1_4:10479583-10479602 None:intergenic 40.0%
!!! CCATGGCTTGTTACATCTTT+TGG - chr1_4:10479580-10479599 Msa0149630:intron 40.0%
TGAAGAGGCTGAAGTAGAAA+TGG - chr1_4:10479622-10479641 Msa0149630:intron 40.0%
! GAACTCCTTTTGCAAAGTCT+TGG - chr1_4:10479656-10479675 Msa0149630:intron 40.0%
! TCCTTTTGCAAAGTCTTGGT+TGG - chr1_4:10479660-10479679 Msa0149630:intron 40.0%
TCCAACCAAGACTTTGCAAA+AGG + chr1_4:10479664-10479683 None:intergenic 40.0%
TTGCAAAGTCTTGGTTGGAA+AGG - chr1_4:10479665-10479684 Msa0149630:intron 40.0%
AGTCTTGGTTGGAAAGGAAA+AGG - chr1_4:10479671-10479690 Msa0149630:intron 40.0%
GTCTTGGTTGGAAAGGAAAA+GGG - chr1_4:10479672-10479691 Msa0149630:intron 40.0%
!!! ACCATCTGAACTGTTTTGGT+GGG + chr1_4:10479738-10479757 None:intergenic 40.0%
!! TACCATCTGAACTGTTTTGG+TGG + chr1_4:10479739-10479758 None:intergenic 40.0%
TCAACATCTGTGAACCAGTA+TGG - chr1_4:10479783-10479802 Msa0149630:intron 40.0%
TGGAGGTTACTTGAATGTGA+GGG + chr1_4:10479829-10479848 None:intergenic 40.0%
ATGGAGGTTACTTGAATGTG+AGG + chr1_4:10479830-10479849 None:intergenic 40.0%
GTCAAAGACAGGAAGAAAGA+AGG - chr1_4:10479894-10479913 Msa0149630:intron 40.0%
GTGAAAATTGTGATAGCCAC+TGG - chr1_4:10480126-10480145 Msa0149630:intron 40.0%
GTGGATTTAGCTGGAAAAGA+TGG - chr1_4:10480361-10480380 Msa0149630:intron 40.0%
!!! TTCTCCTGGGGTTTTTTTAC+AGG - chr1_4:10480399-10480418 Msa0149630:intron 40.0%
GCGTCATCAGAAACATGAAA+AGG + chr1_4:10480435-10480454 None:intergenic 40.0%
TCATAGACACGATTCGAACT+CGG - chr1_4:10481108-10481127 Msa0149630:intron 40.0%
AGAATAGAGTAAGATGGAGC+CGG - chr1_4:10481316-10481335 Msa0149630:intron 40.0%
TTCCAGGGATTGCTTGTTTA+TGG - chr1_4:10481729-10481748 Msa0149630:intron 40.0%
TACCATAAACAAGCAATCCC+TGG + chr1_4:10481734-10481753 None:intergenic 40.0%
TGTTTATGGTAGACAAGGTC+GGG - chr1_4:10481743-10481762 Msa0149630:intron 40.0%
GACAAGGTCGGGAAATATAT+AGG - chr1_4:10481754-10481773 Msa0149630:intron 40.0%
ATATAGGAGCAGCTTAGATC+CGG - chr1_4:10481770-10481789 Msa0149630:intron 40.0%
CCAAAACGACAAAGGAATAC+AGG + chr1_4:10481876-10481895 None:intergenic 40.0%
!! CCTGTATTCCTTTGTCGTTT+TGG - chr1_4:10481873-10481892 Msa0149630:intron 40.0%
TTATTATCGAGCTCACTTGC+TGG - chr1_4:10482096-10482115 Msa0149630:intron 40.0%
TATTATCGAGCTCACTTGCT+GGG - chr1_4:10482097-10482116 Msa0149630:intron 40.0%
CATGAAAAAGGGTTAAGCAG+CGG + chr1_4:10482342-10482361 None:intergenic 40.0%
GTATGGAGTGAATCAACAAG+TGG + chr1_4:10482367-10482386 None:intergenic 40.0%
! TCCCAATAATGAGGTACCTT+TGG + chr1_4:10482403-10482422 None:intergenic 40.0%
CCAGAAGATCTTCAACAGAA+GGG + chr1_4:10482504-10482523 None:intergenic 40.0%
CTGACATACAGGTATTCACT+AGG - chr1_4:10482530-10482549 Msa0149630:CDS 40.0%
! TGAAGGTCTTTTTCCATACC+AGG - chr1_4:10482622-10482641 Msa0149630:intron 40.0%
! GTCTTTTTCCATACCAGGAA+AGG - chr1_4:10482627-10482646 Msa0149630:intron 40.0%
! CTTTTTCCATACCAGGAAAG+GGG - chr1_4:10482629-10482648 Msa0149630:intron 40.0%
! TTTTTCCATACCAGGAAAGG+GGG - chr1_4:10482630-10482649 Msa0149630:intron 40.0%
TAATGTATCCGACACACTCT+GGG + chr1_4:10482945-10482964 None:intergenic 40.0%
TTTGTTGCATCTGACCAGTA+TGG + chr1_4:10482971-10482990 None:intergenic 40.0%
TACTGGTCAGATGCAACAAA+AGG - chr1_4:10482971-10482990 Msa0149630:intron 40.0%
ATGCTGGAAATTGTACCCTT+GGG - chr1_4:10483025-10483044 Msa0149630:intron 40.0%
TACCCTTGGGAACATGTAAA+GGG - chr1_4:10483038-10483057 Msa0149630:intron 40.0%
TTCCCTTTACATGTTCCCAA+GGG + chr1_4:10483043-10483062 None:intergenic 40.0%
TTGGGAACATGTAAAGGGAA+CGG - chr1_4:10483043-10483062 Msa0149630:intron 40.0%
!! AAAAGTGCTGCTTGATCACT+TGG - chr1_4:10483069-10483088 Msa0149630:intron 40.0%
!! AAAGTGCTGCTTGATCACTT+GGG - chr1_4:10483070-10483089 Msa0149630:intron 40.0%
TAATCATCCATTGAGCTGAG+GGG - chr1_4:10483349-10483368 Msa0149630:intron 40.0%
TAGGCCTTTAATATTGCAGC+AGG - chr1_4:10483802-10483821 Msa0149630:intron 40.0%
ACAGCCTGCTGCAATATTAA+AGG + chr1_4:10483809-10483828 None:intergenic 40.0%
! CAGATAATGGCTATTGGTGA+TGG - chr1_4:10483874-10483893 Msa0149630:intron 40.0%
! TTAGGCATTGCACTGAGTAA+TGG - chr1_4:10483931-10483950 Msa0149630:intron 40.0%
GGTTTAAGCAACGATGAAGA+TGG - chr1_4:10483988-10484007 Msa0149630:CDS 40.0%
ATTGCATTCCCTTTCTACAG+AGG - chr1_4:10484066-10484085 Msa0149630:CDS 40.0%
CAACTTACACCTCTGTAGAA+AGG + chr1_4:10484078-10484097 None:intergenic 40.0%
! TCATCTTTACCTTTTCGCGA+AGG + chr1_4:10484138-10484157 None:intergenic 40.0%
GAAATGGAAGCTATGGCCTA+TGG + chr1_4:10476841-10476860 None:intergenic 45.0%
GACATGATAGAGTTGAAGGG+AGG + chr1_4:10476920-10476939 None:intergenic 45.0%
CGGAATAGGAATGGGATTGA+GGG + chr1_4:10476964-10476983 None:intergenic 45.0%
ACGGAATAGGAATGGGATTG+AGG + chr1_4:10476965-10476984 None:intergenic 45.0%
GAATGCGACGGAATAGGAAT+GGG + chr1_4:10476972-10476991 None:intergenic 45.0%
TGAATGCGACGGAATAGGAA+TGG + chr1_4:10476973-10476992 None:intergenic 45.0%
GTTGTTGAATGCGACGGAAT+AGG + chr1_4:10476978-10476997 None:intergenic 45.0%
CCAGCAATTGCAACCATTTC+GGG - chr1_4:10477066-10477085 Msa0149630:three_prime_UTR 45.0%
CAGCAATTGCAACCATTTCG+GGG - chr1_4:10477067-10477086 Msa0149630:three_prime_UTR 45.0%
! GAGGAGGAAAGAGAGAGTAT+CGG - chr1_4:10477107-10477126 Msa0149630:exon 45.0%
! AACCTCTGGTTCGAAAGGAA+GGG + chr1_4:10477455-10477474 None:intergenic 45.0%
! TAACCTCTGGTTCGAAAGGA+AGG + chr1_4:10477456-10477475 None:intergenic 45.0%
! GTCTTAACCTCTGGTTCGAA+AGG + chr1_4:10477460-10477479 None:intergenic 45.0%
ACTTTGAATGTTCCCCAAGG+AGG - chr1_4:10478129-10478148 Msa0149630:CDS 45.0%
GCTTCGTCTAAATGTCCCAA+TGG - chr1_4:10478570-10478589 Msa0149630:intron 45.0%
TGTCCCAATGGCAATGAAAC+TGG - chr1_4:10478582-10478601 Msa0149630:intron 45.0%
CTGCTATAGATGATGTTGGC+AGG - chr1_4:10478647-10478666 Msa0149630:CDS 45.0%
CAAGACAAGCAGAGGAAAGA+GGG - chr1_4:10478955-10478974 Msa0149630:intron 45.0%
TGATGAGATCCGTATCCTCA+TGG - chr1_4:10478989-10479008 Msa0149630:intron 45.0%
TCCCACCAAAACAGTTCAGA+TGG - chr1_4:10479734-10479753 Msa0149630:CDS 45.0%
ATGACGCCTCTGATTCTACA+AGG - chr1_4:10480448-10480467 Msa0149630:intron 45.0%
!! AGCAATTCCAGATAGTGGGT+AGG - chr1_4:10480935-10480954 Msa0149630:intron 45.0%
!! GCAATTCCAGATAGTGGGTA+GGG - chr1_4:10480936-10480955 Msa0149630:intron 45.0%
CATAGACACGATTCGAACTC+GGG - chr1_4:10481109-10481128 Msa0149630:intron 45.0%
GCTATGAATGAAGGATGCCA+CGG - chr1_4:10481210-10481229 Msa0149630:CDS 45.0%
AACAGACACAGATTGAGCAG+AGG - chr1_4:10481274-10481293 Msa0149630:intron 45.0%
! ATTGAGCAGAGGCATGAGTT+GGG - chr1_4:10481285-10481304 Msa0149630:intron 45.0%
! CACAAAAGGCTTTCGAGTAG+AGG + chr1_4:10481356-10481375 None:intergenic 45.0%
! CTACTCGAAAGCCTTTTGTG+AGG - chr1_4:10481356-10481375 Msa0149630:intron 45.0%
TCCTTACACCACATGATTCC+AGG - chr1_4:10481713-10481732 Msa0149630:intron 45.0%
CCTTACACCACATGATTCCA+GGG - chr1_4:10481714-10481733 Msa0149630:intron 45.0%
AAGCAATCCCTGGAATCATG+TGG + chr1_4:10481724-10481743 None:intergenic 45.0%
! GTGTGTCAGGGATTTGGTTT+AGG + chr1_4:10481993-10482012 None:intergenic 45.0%
GCAGGCATGTCTTTACTCTT+TGG - chr1_4:10482282-10482301 Msa0149630:intron 45.0%
! AATGAGGTACCTTTGGTTCG+TGG + chr1_4:10482396-10482415 None:intergenic 45.0%
CCCTTCTGTTGAAGATCTTC+TGG - chr1_4:10482501-10482520 Msa0149630:CDS 45.0%
GCCAGAAGATCTTCAACAGA+AGG + chr1_4:10482505-10482524 None:intergenic 45.0%
! TTGCAGTTGTCTTTGAGGAC+AGG + chr1_4:10482819-10482838 None:intergenic 45.0%
GTAATGTATCCGACACACTC+TGG + chr1_4:10482946-10482965 None:intergenic 45.0%
CGGATACATTACGTCCATAC+TGG - chr1_4:10482954-10482973 Msa0149630:intron 45.0%
TGGTACAGCTTGAACAACAG+TGG + chr1_4:10483002-10483021 None:intergenic 45.0%
GGTACAATTTCCAGCATGTC+TGG + chr1_4:10483022-10483041 None:intergenic 45.0%
CATGCTGGAAATTGTACCCT+TGG - chr1_4:10483024-10483043 Msa0149630:intron 45.0%
GTACCCTTGGGAACATGTAA+AGG - chr1_4:10483037-10483056 Msa0149630:intron 45.0%
GTTCCCTTTACATGTTCCCA+AGG + chr1_4:10483044-10483063 None:intergenic 45.0%
CTTGGGAGTTACTGCTAATG+AGG - chr1_4:10483087-10483106 Msa0149630:intron 45.0%
! TTTTTGTCCCCTCAGCTCAA+TGG + chr1_4:10483359-10483378 None:intergenic 45.0%
TGATGTAGAGATGCTTGAGC+TGG - chr1_4:10483903-10483922 Msa0149630:intron 45.0%
! ATGCTTGAGCTGGCTTCTTT+AGG - chr1_4:10483913-10483932 Msa0149630:intron 45.0%
ATCAGAGAAGACCAAAGCTG+TGG - chr1_4:10483954-10483973 Msa0149630:CDS 45.0%
AATTGCGTTTGCCACAGCTT+TGG + chr1_4:10483968-10483987 None:intergenic 45.0%
AAAGCTGTGGCAAACGCAAT+TGG - chr1_4:10483967-10483986 Msa0149630:CDS 45.0%
TGCATATCGATAGATGGCGT+CGG + chr1_4:10484019-10484038 None:intergenic 45.0%
TATGCATTCTGAGCAGCTGA+AGG - chr1_4:10484033-10484052 Msa0149630:CDS 45.0%
!!! GACAGCTCTAGTTTTATGGC+TGG + chr1_4:10484383-10484402 None:intergenic 45.0%
!!! ATTTTTTTAGAAATAATATT+TGG - chr1_4:10480903-10480922 Msa0149630:intron 5.0%
CTTTCGTTTCTCGGCTTAGC+GGG + chr1_4:10476798-10476817 None:intergenic 50.0%
GCTTTCGTTTCTCGGCTTAG+CGG + chr1_4:10476799-10476818 None:intergenic 50.0%
CGGAGAAGGTTAGAGAAACG+AGG + chr1_4:10476893-10476912 None:intergenic 50.0%
TGATAGAGTTGAAGGGAGGG+TGG + chr1_4:10476916-10476935 None:intergenic 50.0%
GTTACAGAAAGGAACGACGG+CGG + chr1_4:10477002-10477021 None:intergenic 50.0%
GGAGGAGGAGAGTTACAGAA+AGG + chr1_4:10477013-10477032 None:intergenic 50.0%
CCCGAAATGGTTGCAATTGC+TGG + chr1_4:10477069-10477088 None:intergenic 50.0%
TCTTCTTCCTCTTCGGCGTT+CGG + chr1_4:10477144-10477163 None:intergenic 50.0%
AACGCCGAAGAGGAAGAAGA+AGG - chr1_4:10477144-10477163 Msa0149630:CDS 50.0%
GCCCGATGATCCTGAAATCT+TGG - chr1_4:10477207-10477226 Msa0149630:CDS 50.0%
GAAGGGGTCCCTCTTCATAT+GGG + chr1_4:10477438-10477457 None:intergenic 50.0%
! ACCTCTGGTTCGAAAGGAAG+GGG + chr1_4:10477454-10477473 None:intergenic 50.0%
GCAAGACAAGCAGAGGAAAG+AGG - chr1_4:10478954-10478973 Msa0149630:intron 50.0%
GAGATCCGTATCCTCATGGT+TGG - chr1_4:10478993-10479012 Msa0149630:intron 50.0%
!! AACTGCCAAGGCTTTGAGAG+AGG - chr1_4:10480089-10480108 Msa0149630:intron 50.0%
TTTGAGAGAGGCCTCAGCAA+GGG - chr1_4:10480101-10480120 Msa0149630:intron 50.0%
! AATTTTCACGCCCCTTGCTG+AGG + chr1_4:10480115-10480134 None:intergenic 50.0%
GAGCTGCCTTGTAGAATCAG+AGG + chr1_4:10480457-10480476 None:intergenic 50.0%
GCTGCAGAGAACATGTAGGA+TGG - chr1_4:10481232-10481251 Msa0149630:CDS 50.0%
! GATTGAGCAGAGGCATGAGT+TGG - chr1_4:10481284-10481303 Msa0149630:intron 50.0%
ATAGAGTAAGATGGAGCCGG+AGG - chr1_4:10481319-10481338 Msa0149630:intron 50.0%
AGAGGAAAGAGATGTGCCTC+CGG + chr1_4:10481338-10481357 None:intergenic 50.0%
! TCGAAAGCCTTTTGTGAGGC+AGG - chr1_4:10481360-10481379 Msa0149630:intron 50.0%
! GGGAACAATGCTTTGAGCAG+TGG - chr1_4:10481420-10481439 Msa0149630:CDS 50.0%
CCCTGGAATCATGTGGTGTA+AGG + chr1_4:10481717-10481736 None:intergenic 50.0%
ATTACCTCTCGACAGACGTC+CGG + chr1_4:10481792-10481811 None:intergenic 50.0%
! TTGAGGGTGTGTCAGGGATT+TGG + chr1_4:10481999-10482018 None:intergenic 50.0%
! TGGCTATTGAGGGTGTGTCA+GGG + chr1_4:10482005-10482024 None:intergenic 50.0%
! ATGGCTATTGAGGGTGTGTC+AGG + chr1_4:10482006-10482025 None:intergenic 50.0%
! AGCTCACTTGCTGGGATCTA+TGG - chr1_4:10482105-10482124 Msa0149630:intron 50.0%
TCTGGCATCTGCTGACATAC+AGG - chr1_4:10482519-10482538 Msa0149630:CDS 50.0%
TCATTCCCCCTTTCCTGGTA+TGG + chr1_4:10482638-10482657 None:intergenic 50.0%
ACATGTCATTCCCCCTTTCC+TGG + chr1_4:10482643-10482662 None:intergenic 50.0%
TCAAGCTGTACCAGACATGC+TGG - chr1_4:10483009-10483028 Msa0149630:intron 50.0%
TAGAGTTGAAGGGAGGGTGG+CGG + chr1_4:10476913-10476932 None:intergenic 55.0%
! TTGAGGGAGAGAGCACGTGA+TGG + chr1_4:10476948-10476967 None:intergenic 55.0%
GCTGCACGTATTCCCCGAAA+TGG + chr1_4:10477082-10477101 None:intergenic 55.0%
CTCTCTCTTTCCTCCTCCGT+CGG + chr1_4:10477104-10477123 None:intergenic 55.0%
GGAAGGGGTCCCTCTTCATA+TGG + chr1_4:10477439-10477458 None:intergenic 55.0%
ACCCCTTCCTTTCGAACCAG+AGG - chr1_4:10477450-10477469 Msa0149630:intron 55.0%
GACAGCAGCAAGACAAGCAG+AGG - chr1_4:10478947-10478966 Msa0149630:intron 55.0%
TGAGGCCTCTCTCAAAGCCT+TGG + chr1_4:10480097-10480116 None:intergenic 55.0%
! CTTTGAGAGAGGCCTCAGCA+AGG - chr1_4:10480100-10480119 Msa0149630:intron 55.0%
TTGAGAGAGGCCTCAGCAAG+GGG - chr1_4:10480102-10480121 Msa0149630:intron 55.0%
CCATCTCCCTACCCACTATC+TGG + chr1_4:10480945-10480964 None:intergenic 55.0%
!! CCAGATAGTGGGTAGGGAGA+TGG - chr1_4:10480942-10480961 Msa0149630:intron 55.0%
CTACATGTTCTCTGCAGCCG+TGG + chr1_4:10481230-10481249 None:intergenic 55.0%
CACGGCTGCAGAGAACATGT+AGG - chr1_4:10481228-10481247 Msa0149630:CDS 55.0%
AGACACTGCCCAGAGTGTGT+CGG - chr1_4:10482934-10482953 Msa0149630:intron 55.0%
CGGCTTAGCGGGAGATGCAA+TGG + chr1_4:10476787-10476806 None:intergenic 60.0%
GGCGGCGTTGTTGAATGCGA+CGG + chr1_4:10476984-10477003 None:intergenic 60.0%
AAAGAGACACGGCGAGGAGG+AGG + chr1_4:10477031-10477050 None:intergenic 60.0%
GCAAAAGAGACACGGCGAGG+AGG + chr1_4:10477034-10477053 None:intergenic 60.0%
AGCGCAAAAGAGACACGGCG+AGG + chr1_4:10477037-10477056 None:intergenic 60.0%
TCAGAAGCCGAACGCCGAAG+AGG - chr1_4:10477134-10477153 Msa0149630:CDS 60.0%
GGGCACACCTGCCTCACAAA+AGG + chr1_4:10481370-10481389 None:intergenic 60.0%
GAGGCAGGTGTGCCCTTGTT+TGG - chr1_4:10481375-10481394 Msa0149630:intron 60.0%
! CAGGTGTGCCCTTGTTTGGC+AGG - chr1_4:10481379-10481398 Msa0149630:intron 60.0%
AGATCCGGACGTCTGTCGAG+AGG - chr1_4:10481785-10481804 Msa0149630:intron 60.0%
!! TGAAGGGAGGGTGGCGGAGA+AGG + chr1_4:10476907-10476926 None:intergenic 65.0%
CGGGGAATACGTGCAGCCGA+CGG - chr1_4:10477085-10477104 Msa0149630:three_prime_UTR 65.0%
GGAATACGTGCAGCCGACGG+AGG - chr1_4:10477088-10477107 Msa0149630:three_prime_UTR 65.0%
ATACGTGCAGCCGACGGAGG+AGG - chr1_4:10477091-10477110 Msa0149630:three_prime_UTR 65.0%
GAGACACGGCGAGGAGGAGG+AGG + chr1_4:10477028-10477047 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 10476709 10484459 10476709 ID=Msa0149630;Name=Msa0149630
chr1_4 mRNA 10476709 10484459 10476709 ID=Msa0149630-mRNA-1;Parent=Msa0149630;Name=Msa0149630-mRNA-1;_AED=0.06;_eAED=0.06;_QI=175|0.83|0.92|0.92|1|1|13|415|595
chr1_4 exon 10476709 10477291 10476709 ID=Msa0149630-mRNA-1:exon:4474;Parent=Msa0149630-mRNA-1
chr1_4 exon 10478060 10478248 10478060 ID=Msa0149630-mRNA-1:exon:4473;Parent=Msa0149630-mRNA-1
chr1_4 exon 10478628 10478678 10478628 ID=Msa0149630-mRNA-1:exon:4472;Parent=Msa0149630-mRNA-1
chr1_4 exon 10478763 10478882 10478763 ID=Msa0149630-mRNA-1:exon:4471;Parent=Msa0149630-mRNA-1
chr1_4 exon 10479362 10479433 10479362 ID=Msa0149630-mRNA-1:exon:4470;Parent=Msa0149630-mRNA-1
chr1_4 exon 10479714 10479767 10479714 ID=Msa0149630-mRNA-1:exon:4469;Parent=Msa0149630-mRNA-1
chr1_4 exon 10480748 10480840 10480748 ID=Msa0149630-mRNA-1:exon:4468;Parent=Msa0149630-mRNA-1
chr1_4 exon 10481016 10481116 10481016 ID=Msa0149630-mRNA-1:exon:4467;Parent=Msa0149630-mRNA-1
chr1_4 exon 10481199 10481267 10481199 ID=Msa0149630-mRNA-1:exon:4466;Parent=Msa0149630-mRNA-1
chr1_4 exon 10481413 10481590 10481413 ID=Msa0149630-mRNA-1:exon:4465;Parent=Msa0149630-mRNA-1
chr1_4 exon 10482158 10482253 10482158 ID=Msa0149630-mRNA-1:exon:4464;Parent=Msa0149630-mRNA-1
chr1_4 exon 10482361 10482612 10482361 ID=Msa0149630-mRNA-1:exon:4463;Parent=Msa0149630-mRNA-1
chr1_4 exon 10483940 10484459 10483940 ID=Msa0149630-mRNA-1:exon:4462;Parent=Msa0149630-mRNA-1
chr1_4 five_prime_UTR 10484285 10484459 10484285 ID=Msa0149630-mRNA-1:five_prime_utr;Parent=Msa0149630-mRNA-1
chr1_4 CDS 10483940 10484284 10483940 ID=Msa0149630-mRNA-1:cds;Parent=Msa0149630-mRNA-1
chr1_4 CDS 10482361 10482612 10482361 ID=Msa0149630-mRNA-1:cds;Parent=Msa0149630-mRNA-1
chr1_4 CDS 10482158 10482253 10482158 ID=Msa0149630-mRNA-1:cds;Parent=Msa0149630-mRNA-1
chr1_4 CDS 10481413 10481590 10481413 ID=Msa0149630-mRNA-1:cds;Parent=Msa0149630-mRNA-1
chr1_4 CDS 10481199 10481267 10481199 ID=Msa0149630-mRNA-1:cds;Parent=Msa0149630-mRNA-1
chr1_4 CDS 10481016 10481116 10481016 ID=Msa0149630-mRNA-1:cds;Parent=Msa0149630-mRNA-1
chr1_4 CDS 10480748 10480840 10480748 ID=Msa0149630-mRNA-1:cds;Parent=Msa0149630-mRNA-1
chr1_4 CDS 10479714 10479767 10479714 ID=Msa0149630-mRNA-1:cds;Parent=Msa0149630-mRNA-1
chr1_4 CDS 10479362 10479433 10479362 ID=Msa0149630-mRNA-1:cds;Parent=Msa0149630-mRNA-1
chr1_4 CDS 10478763 10478882 10478763 ID=Msa0149630-mRNA-1:cds;Parent=Msa0149630-mRNA-1
chr1_4 CDS 10478628 10478678 10478628 ID=Msa0149630-mRNA-1:cds;Parent=Msa0149630-mRNA-1
chr1_4 CDS 10478060 10478248 10478060 ID=Msa0149630-mRNA-1:cds;Parent=Msa0149630-mRNA-1
chr1_4 CDS 10477124 10477291 10477124 ID=Msa0149630-mRNA-1:cds;Parent=Msa0149630-mRNA-1
chr1_4 three_prime_UTR 10476709 10477123 10476709 ID=Msa0149630-mRNA-1:three_prime_utr;Parent=Msa0149630-mRNA-1
Gene Sequence

>Msa0149630

ATGCTTCCTCGTTTCTCTAACCTTCTCCGCCACCCTCCCTTCAACTCTATCATGTCACGTGCCATCACGTGCTCTCTCCCTCAATCCCATTCCTATTCCGTCGCATTCAACAACGCCGCCGTCGTTCCTTTCTGTAACTCTCCTCCTCCTCCTCGCCGTGTCTCTTTTGCGCTTTTCAATAACCAGCAATTGCAACCATTTCGGGGAATACGTGCAGCCGACGGAGGAGGAAAGAGAGAGTATCGGAAAGTCAGAAGCCGAACGCCGAAGAGGAAGAAGAAGGAGTTAGAACTCTCTGTCCCTATTTGCATCGAAGAAAATTTGCCCGATGATCCTGAAATCTTGAATATTGCAGAGATGCTTCGTCTAAATGTCCCAATGGCAATGAAACTGGCATTTGATGGTTTGAAAGGTTCAGAGTATAAAACAAGAGATACTGCTATAGATGATGTTGGCAGGTTTGAAAGTGTTGAGTTATCCGTGCTTCTTTGTAATGATGAGTTTATACAAAAACTTAACAAGGAATGGAGAGATGAAGATCACGCTACTGATGTTCTCTCAATGTCACAACATGAACCTGGACTCAATCTTCCTATTCTTATGTTGGGTGATATTGTAATTTCTCTTGAGACAGCAGCAAGACAAGCAGAGGAAAGAGGGCACACACTTCTTGATGAGATCCGTATCCTCATGGTCCATGGCTTGTTACATCTTTTGGGATTTGATCATGAATTAAGTGAAGAGGCTGAAGTAGAAATGGAGAAAGAAGAGGAACTCCTTTTGCAAAGTCTTGGTTGGAAAGGAAAAGGGCTAATAAAGAGTGCATATGATGCTGAAGAAAATGCAAGTTCCCACCAAAACAGTTCAGATGACAGGAAGAAAGAAGGCAGTCTTCGATTTTACAAACCAAAGTTCAGCTATATTTTCTGTGATATGGATGGAACATTGCTGAACAGCAAAAGTCAAATTTCTACTTCAACTGCCAAGGCTTTGAGAGAGGCCTCAGCAAGGGGCGTGAAAATTGTGATAGCCACTGGAAAAGCTCGTCCAGCTGTGATAGATATTTTTAAGAAGGTGGATTTAGCTGGAAAAGATGGCATTGTTTCAGAATTTTCTCCTGGGGTTTTTTTACAGGAAAAGTATTGGATTGTTTGGGAACAATGCTTTGAGCAGTGGCATATTGATATCGGATTGCTTGTTTATGGTAGACAAGGTCGGGAAATATATAGGAGCAGCTTAGATCCGGACGTCTGTCGAGAGGCATGTCTTTACTCTTTGGAGAGTAAGGTTCCACTTATTGCATTTTGTGAAGGCCGCTGCTTAACCCTTTTTCATGATCCACTTGTTGATTCACTCCATACAATATACCACGAACCAAAGGCTGAGATCATCCCTTCTGTTGAAGATCTTCTGGCATCTGCTGACATACAGAAAATGATTTTCTTAGACACTGCCCAGAGTGTGTCGGATACATTACGTCCATACTGGTCAGATGCAACAAAAGGTCGTGCCACTGTTGTTCAAGCTGTACCAGACATGCTGGAAATTGTACCCTTGGGAACATGTAAAGGGAACGGAGTAAAAGTGCTGCTTGATCACTTGGGAGTTACTGCTAATGAGATAATGGCTATTGGTGATGGCGAAAATGATGTAGAGATGCTTGAGCTGGCTTCTTTAGGCATTGCACTGAGTAATGGATCAGAGAAGACCAAAGCTGTGGCAAACGCAATTGGTTTAAGCAACGATGAAGATGGTGCAGCCGACGCCATCTATCGATATGCATTCTGA
Protein sequence

>Msa0149630

MLPRFSNLLRHPPFNSIMSRAITCSLPQSHSYSVAFNNAAVVPFCNSPPPPRRVSFALFNNQQLQPFRGIRAADGGGKREYRKVRSRTPKRKKKELELSVPICIEENLPDDPEILNIAEMLRLNVPMAMKLAFDGLKGSEYKTRDTAIDDVGRFESVELSVLLCNDEFIQKLNKEWRDEDHATDVLSMSQHEPGLNLPILMLGDIVISLETAARQAEERGHTLLDEIRILMVHGLLHLLGFDHELSEEAEVEMEKEEELLLQSLGWKGKGLIKSAYDAEENASSHQNSSDDRKKEGSLRFYKPKFSYIFCDMDGTLLNSKSQISTSTAKALREASARGVKIVIATGKARPAVIDIFKKVDLAGKDGIVSEFSPGVFLQEKYWIVWEQCFEQWHIDIGLLVYGRQGREIYRSSLDPDVCREACLYSLESKVPLIAFCEGRCLTLFHDPLVDSLHTIYHEPKAEIIPSVEDLLASADIQKMIFLDTAQSVSDTLRPYWSDATKGRATVVQAVPDMLEIVPLGTCKGNGVKVLLDHLGVTANEIMAIGDGENDVEMLELASLGIALSNGSEKTKAVANAIGLSNDEDGAADAIYRYAF*