AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0715180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0715180 MtrunA17_Chr5g0402401 98.006 351 7 0 1 351 1 351 0.0 723
Msa0715180 MtrunA17_Chr5g0422531 58.449 361 135 4 1 351 1 356 3.02e-144 412
Msa0715180 MtrunA17_Chr4g0011731 50.530 283 134 2 73 349 100 382 1.29e-95 290
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0715180 AT4G37040.1 78.070 342 71 2 12 351 11 350 0.0 548
Msa0715180 AT1G13270.1 60.390 308 117 2 49 351 62 369 6.97e-135 389
Msa0715180 AT3G25740.1 56.954 302 121 4 55 349 42 341 1.81e-117 343
Msa0715180 AT2G45240.1 48.561 278 137 2 78 349 106 383 3.05e-89 273
Msa0715180 AT1G13270.2 60.377 212 79 2 49 255 62 273 5.98e-84 256
Msa0715180 AT2G45240.2 46.977 215 109 1 78 287 106 320 8.12e-65 209
Msa0715180 AT3G25740.2 57.143 140 56 1 55 190 42 181 6.19e-44 152

Find 96 sgRNAs with CRISPR-Local

Find 402 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGTTACCTCGATCACTTTC+TGG 0.148121 5_1:+8108218 Msa0715180:CDS
TACAGAACCTATGCTGACTA+TGG 0.239457 5_1:+8113457 Msa0715180:intron
TGCTTTATCTAGGCATTCTT+TGG 0.262562 5_1:-8110760 None:intergenic
TACCCATAAAATAGGTTATT+GGG 0.263492 5_1:+8113975 Msa0715180:three_prime_UTR
TTCTGGAAGGCTTGCTGCTC+AGG 0.268389 5_1:+8108439 Msa0715180:CDS
TTACCCATAAAATAGGTTAT+TGG 0.280804 5_1:+8113974 Msa0715180:three_prime_UTR
ATAGCGTATTGCTCCCTCTT+TGG 0.283049 5_1:+8113946 Msa0715180:three_prime_UTR
ACAGATGTGCATACACTCTT+TGG 0.287821 5_1:-8109231 None:intergenic
AGTGATCATGCAGATAAATA+TGG 0.316494 5_1:+8110949 Msa0715180:intron
CCAATCTCTTATTCAATAGA+AGG 0.322925 5_1:+8108246 Msa0715180:CDS
ATTGAATGTATGAGAGCTTC+TGG 0.324353 5_1:+8108422 Msa0715180:CDS
CACCATTATCAATTATCATT+TGG 0.331640 5_1:-8109176 None:intergenic
TTACTGAAGTGCAGAATAAC+TGG 0.332632 5_1:-8111030 None:intergenic
CGACGTGGAGAAACAATTCC+AGG 0.340529 5_1:-8108305 None:intergenic
GGCACATGCTTCTTATAACT+TGG 0.349020 5_1:-8113719 None:intergenic
CAAGAACTTTGATCTGAAAC+TGG 0.356213 5_1:-8113685 None:intergenic
GGAGTGGAATACAAGAAAAT+TGG 0.358013 5_1:+8110801 Msa0715180:CDS
TTTCAGATCAAAGTTCTTGC+TGG 0.375544 5_1:+8113689 Msa0715180:three_prime_UTR
TGGAGGCTTTGTTATGTCCT+TGG 0.383263 5_1:-8108336 None:intergenic
TACCCGTCTCCTCTTGGTTA+TGG 0.385751 5_1:+8109201 Msa0715180:CDS
CACCAAATGATAATTGATAA+TGG 0.386505 5_1:+8109174 Msa0715180:CDS
CCTTCTATTGAATAAGAGAT+TGG 0.388798 5_1:-8108246 None:intergenic
ACAACTTACATTTAGATAAA+CGG 0.389802 5_1:-8109405 None:intergenic
CCCCATCAGGTGTTATCAAA+AGG 0.394761 5_1:-8113562 None:intergenic
GGAGGCTTTGTTATGTCCTT+GGG 0.396406 5_1:-8108335 None:intergenic
GTGCAACAGTTTGTTGGCCA+TGG 0.402876 5_1:+8110982 Msa0715180:CDS
ATATCGATATTGCTTTATCT+AGG 0.407550 5_1:-8110770 None:intergenic
CAATTGTCTTTCCACATCAC+TGG 0.411722 5_1:-8113491 None:intergenic
TCAATGGGTAGAGGGAGATT+AGG 0.412793 5_1:+8113845 Msa0715180:three_prime_UTR
ATACAACACTGTGACTCATT+TGG 0.415013 5_1:-8113740 None:intergenic
ACCTCAAGCGAACGTGAATC+TGG 0.417194 5_1:-8109279 None:intergenic
CATGCAGATAAATATGGATA+TGG 0.420071 5_1:+8110955 Msa0715180:CDS
TGCAACAGTTTGTTGGCCAT+GGG 0.424319 5_1:+8110983 Msa0715180:CDS
TATTCTTTCGATCATTAAGA+TGG 0.439056 5_1:+8113876 Msa0715180:three_prime_UTR
TTTCATTATAGGTTTGTCAA+TGG 0.441428 5_1:+8113829 Msa0715180:three_prime_UTR
ACCTGAAGTACATGATGAAA+AGG 0.457990 5_1:+8108397 Msa0715180:CDS
GAACATCTTACTGAATTGTT+CGG 0.461558 5_1:-8110824 None:intergenic
GTCATAATCTCAGCCCCATC+AGG 0.462099 5_1:-8113575 None:intergenic
TTCATTATAGGTTTGTCAAT+GGG 0.462622 5_1:+8113830 Msa0715180:three_prime_UTR
CAGTGATGTGGAAAGACAAT+TGG 0.469081 5_1:+8113492 Msa0715180:CDS
TGGACAGTTGTAACAGAAGA+TGG 0.474162 5_1:+8113512 Msa0715180:CDS
CAGTTTGTTGGCCATGGGGT+TGG 0.478716 5_1:+8110988 Msa0715180:CDS
CCTGAAGTACATGATGAAAA+GGG 0.481951 5_1:+8108398 Msa0715180:CDS
CGCAATCCCTGGCGGAACCA+TGG 0.485545 5_1:-8108369 None:intergenic
GCTCAGGTTCTTCAGTATGC+TGG 0.486769 5_1:+8108455 Msa0715180:CDS
GGAATAGTTGAGGAAGTGAT+TGG 0.489316 5_1:-8108084 None:intergenic
CTGTTAAAGTCTTCTTTCAC+CGG 0.490926 5_1:+8108034 Msa0715180:CDS
GGTGCGTACCCGTCTCCTCT+TGG 0.492621 5_1:+8109195 Msa0715180:CDS
GTAAAATCCATGGTTCCGCC+AGG 0.509922 5_1:+8108362 Msa0715180:CDS
CCGTCTCCTCTTGGTTATGG+TGG 0.510232 5_1:+8109204 Msa0715180:CDS
TTAAATCAAACCTTCACGAT+TGG 0.513964 5_1:+8111707 Msa0715180:CDS
GGTGTTGTGCAACAGTTTGT+TGG 0.514303 5_1:+8110976 Msa0715180:CDS
CCCATCAGGTGTTATCAAAA+GGG 0.517184 5_1:-8113561 None:intergenic
GCACATGCTTCTTATAACTT+GGG 0.520577 5_1:-8113718 None:intergenic
ATTTCATCAGTCGTTATGCC+TGG 0.524254 5_1:-8109138 None:intergenic
CAACTATTCCGTTACAGACA+AGG 0.529560 5_1:+8108097 Msa0715180:CDS
ATCGATATGTGCACCTGGAG+TGG 0.530627 5_1:+8110785 Msa0715180:CDS
TCAGGTCCACTCGCAATCCC+TGG 0.530751 5_1:-8108380 None:intergenic
AATCGTAAACGCTTGAGACC+TGG 0.531063 5_1:+8108287 Msa0715180:CDS
ATAGGTTTGTCAATGGGTAG+AGG 0.532387 5_1:+8113836 Msa0715180:three_prime_UTR
ATAGAAACGCACCTTGACTA+AGG 0.539069 5_1:-8108480 None:intergenic
TATGAATTGTAGGGTTATCA+TGG 0.548429 5_1:+8109823 Msa0715180:intron
AGGTCTCAAGCGTTTACGAT+TGG 0.553505 5_1:-8108285 None:intergenic
GCCTCCATATGTAAAATCCA+TGG 0.558800 5_1:+8108352 Msa0715180:CDS
TAGGTTTGTCAATGGGTAGA+GGG 0.560871 5_1:+8113837 Msa0715180:three_prime_UTR
CCACCATAACCAAGAGGAGA+CGG 0.567121 5_1:-8109204 None:intergenic
ACCAGATTCACGTTCGCTTG+AGG 0.570704 5_1:+8109278 Msa0715180:CDS
GGTTGAAACCTTGTCTGTAA+CGG 0.574103 5_1:-8108105 None:intergenic
CACCATAACCAAGAGGAGAC+GGG 0.579998 5_1:-8109203 None:intergenic
AAGAGAAGAGAACATGGCTA+TGG 0.582836 5_1:+8107991 Msa0715180:exon
TTGCGGGGATGTTGATGATG+AGG 0.585529 5_1:+8109867 Msa0715180:CDS
ACAGAACCTATGCTGACTAT+GGG 0.591367 5_1:+8113458 Msa0715180:intron
AACGTGAATCTGGTATTCCA+TGG 0.591774 5_1:-8109269 None:intergenic
GTTCCGCCAGGGATTGCGAG+TGG 0.597034 5_1:+8108374 Msa0715180:CDS
TATGGGTAAAAGATCCAAAG+AGG 0.597848 5_1:-8113960 None:intergenic
GTATGCTGGCACCTTAGTCA+AGG 0.603231 5_1:+8108469 Msa0715180:CDS
TGTGTTCAAACTGAGCTGAA+AGG 0.604770 5_1:-8113538 None:intergenic
GTGAATGAATGCATTTGCCA+TGG 0.609251 5_1:+8109252 Msa0715180:CDS
AATGTATGAGAGCTTCTGGA+AGG 0.615258 5_1:+8108426 Msa0715180:CDS
GCAGCGAAAGAATCGATCTC+CGG 0.619620 5_1:-8108053 None:intergenic
ATGGGTAAAAGATCCAAAGA+GGG 0.622146 5_1:-8113959 None:intergenic
TAAAATCCATGGTTCCGCCA+GGG 0.622525 5_1:+8108363 Msa0715180:CDS
GCAATATCGATATGTGCACC+TGG 0.626501 5_1:+8110780 Msa0715180:CDS
ATGCTGCCCATAGTCAGCAT+AGG 0.627596 5_1:-8113464 None:intergenic
TCCACGTCGAAAAGTTCCCA+AGG 0.628745 5_1:+8108319 Msa0715180:CDS
TGTCTGTAACGGAATAGTTG+AGG 0.629364 5_1:-8108094 None:intergenic
CTGAAGTACATGATGAAAAG+GGG 0.629440 5_1:+8108399 Msa0715180:CDS
CAGTGACACGCTGCTGCTCG+CGG 0.632054 5_1:-8108014 None:intergenic
GCAGCATCAATCCAGTGATG+TGG 0.633825 5_1:+8113480 Msa0715180:CDS
ATAAAAGAGATAAGTTACAA+AGG 0.634077 5_1:+8107953 Msa0715180:five_prime_UTR
ATAGTTGAGGAAGTGATTGG+TGG 0.636650 5_1:-8108081 None:intergenic
GCAACAGTTTGTTGGCCATG+GGG 0.649120 5_1:+8110984 Msa0715180:CDS
GTTAAGCCAGAAAGTGATCG+AGG 0.668909 5_1:-8108224 None:intergenic
GTAGGAAGAAAGGAAACACA+TGG 0.695496 5_1:+8107929 Msa0715180:five_prime_UTR
GGTCCACTCGCAATCCCTGG+CGG 0.706269 5_1:-8108377 None:intergenic
GGAAAACCACCATAACCAAG+AGG 0.708028 5_1:-8109210 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTGTAAAATTATATATCT+TGG + chr5_1:8109320-8109339 Msa0715180:intron 10.0%
!! ATTGTAAAATTATATATCTT+GGG + chr5_1:8109321-8109340 Msa0715180:intron 10.0%
!!! TAAGTTGTATAATTTTTTTT+TGG + chr5_1:8109420-8109439 Msa0715180:intron 10.0%
!!! ATTGGTAAAAATATTAATTT+TGG + chr5_1:8110067-8110086 Msa0715180:intron 10.0%
!! CAAATAAAATTCATTATATT+TGG - chr5_1:8110557-8110576 None:intergenic 10.0%
!!! CATTTTACAAAAAAATTTGT+AGG + chr5_1:8107911-8107930 Msa0715180:five_prime_UTR 15.0%
!! AATTAAATTGTTGAAATGAT+TGG + chr5_1:8109055-8109074 Msa0715180:intron 15.0%
!!! TATTTTGTTCTTTTAAAACA+TGG + chr5_1:8109640-8109659 Msa0715180:intron 15.0%
!!! TTAATTCATCTATCTTATTT+TGG + chr5_1:8109688-8109707 Msa0715180:intron 15.0%
!! ATTCCAAAACATATAAAAAT+GGG - chr5_1:8109747-8109766 None:intergenic 15.0%
!! AATTCCAAAACATATAAAAA+TGG - chr5_1:8109748-8109767 None:intergenic 15.0%
!!! ATTTATGGTTTTATATTTTC+TGG + chr5_1:8110463-8110482 Msa0715180:intron 15.0%
!!! ATAAATATAGATTTTCAACA+CGG - chr5_1:8111130-8111149 None:intergenic 15.0%
!! AATATAATATAATATAAGGG+TGG - chr5_1:8111523-8111542 None:intergenic 15.0%
!!! TTCTTGTTATTTTTATTTTC+AGG + chr5_1:8111659-8111678 Msa0715180:intron 15.0%
!! ATAACAAAATCTATAAATCT+TGG - chr5_1:8113394-8113413 None:intergenic 15.0%
!!! TTTAATTTTTTTTCTTTACC+TGG + chr5_1:8113427-8113446 Msa0715180:intron 15.0%
!! AAAAAAATTTGTAGGAAGAA+AGG + chr5_1:8107919-8107938 Msa0715180:five_prime_UTR 20.0%
!! ATAAAAGAGATAAGTTACAA+AGG + chr5_1:8107953-8107972 Msa0715180:five_prime_UTR 20.0%
!! TAATTGAAAAGAAGAGAAAA+TGG - chr5_1:8108149-8108168 None:intergenic 20.0%
!!! TATTTTAATTATGATTGCAG+CGG + chr5_1:8108709-8108728 Msa0715180:intron 20.0%
!!! TTATTTTTACTAGCTTATAG+TGG - chr5_1:8108791-8108810 None:intergenic 20.0%
!! TATTAACTAACAAACATATG+AGG + chr5_1:8108949-8108968 Msa0715180:intron 20.0%
!!! TTTACAATTTAAGAGTTTTC+TGG - chr5_1:8109309-8109328 None:intergenic 20.0%
!! ACAACTTACATTTAGATAAA+CGG - chr5_1:8109408-8109427 None:intergenic 20.0%
!!! TGTATAATTTTTTTTTGGCA+TGG + chr5_1:8109425-8109444 Msa0715180:intron 20.0%
!! AAATGCAGAATTAAATAACA+GGG - chr5_1:8109977-8109996 None:intergenic 20.0%
!! AAAATGCAGAATTAAATAAC+AGG - chr5_1:8109978-8109997 None:intergenic 20.0%
!!! TTTACCAATATTTTGAAAAC+TGG - chr5_1:8110056-8110075 None:intergenic 20.0%
!!! ATTTTGGATTTTAGATTACT+TGG + chr5_1:8110083-8110102 Msa0715180:intron 20.0%
!!! ATATCTGAAATTCAAAAACT+AGG - chr5_1:8110206-8110225 None:intergenic 20.0%
!! TAGATATTTATTATCTTAGC+AGG + chr5_1:8110313-8110332 Msa0715180:intron 20.0%
!! AGATATTTATTATCTTAGCA+GGG + chr5_1:8110314-8110333 Msa0715180:intron 20.0%
!!! TTTTATATTTTCTGGTCAAT+AGG + chr5_1:8110471-8110490 Msa0715180:intron 20.0%
!! AACAATTAGAATAAGTTGTA+AGG - chr5_1:8110587-8110606 None:intergenic 20.0%
!!! CAACTTATTCTAATTGTTTT+TGG + chr5_1:8110589-8110608 Msa0715180:intron 20.0%
!! TCATATAAACACAAAACAAA+TGG - chr5_1:8110704-8110723 None:intergenic 20.0%
!! CATAACAATCTATATTGTAT+TGG - chr5_1:8111747-8111766 None:intergenic 20.0%
!! AAATATTGAATTGTGACATT+AGG - chr5_1:8111957-8111976 None:intergenic 20.0%
!!! ACACTAAAACTTGTTAAAAA+GGG - chr5_1:8112369-8112388 None:intergenic 20.0%
!!! GAAAATAATGATTTTACTCT+TGG + chr5_1:8112515-8112534 Msa0715180:intron 20.0%
!!! TCAAAATTTGTAAAGTACTT+TGG + chr5_1:8112826-8112845 Msa0715180:intron 20.0%
!!! GTTTTTCATATATAGAGTTA+AGG + chr5_1:8113269-8113288 Msa0715180:intron 20.0%
!! CTTAAGTCTATATATAATCA+TGG + chr5_1:8113305-8113324 Msa0715180:intron 20.0%
!!! CTACACTTATTTTTCATTAT+AGG + chr5_1:8113818-8113837 Msa0715180:three_prime_UTR 20.0%
! AAAGAAGAGAAAATGGAATT+AGG - chr5_1:8108142-8108161 None:intergenic 25.0%
! ATATTTATAAGCTAGTTGAG+CGG - chr5_1:8108649-8108668 None:intergenic 25.0%
!! ACATATGAGGTTGTTATTAT+TGG + chr5_1:8108962-8108981 Msa0715180:intron 25.0%
! CACCAAATGATAATTGATAA+TGG + chr5_1:8109174-8109193 Msa0715180:CDS 25.0%
! CACCATTATCAATTATCATT+TGG - chr5_1:8109179-8109198 None:intergenic 25.0%
!!! TGACATTTTCTTTTATTTGC+AGG + chr5_1:8109355-8109374 Msa0715180:intron 25.0%
!!! ATTTTCTTTTATTTGCAGGA+TGG + chr5_1:8109359-8109378 Msa0715180:intron 25.0%
!!! GCTTATTTTTGCTTTTTGTT+CGG + chr5_1:8109454-8109473 Msa0715180:intron 25.0%
!!! CTTATTTTTGCTTTTTGTTC+GGG + chr5_1:8109455-8109474 Msa0715180:intron 25.0%
!!! TTGCCCATTTTTATATGTTT+TGG + chr5_1:8109741-8109760 Msa0715180:intron 25.0%
! ATAAAACTTGTGCTTTGATT+TGG + chr5_1:8109784-8109803 Msa0715180:intron 25.0%
! AACATATGGATATGAATTGT+AGG + chr5_1:8109813-8109832 Msa0715180:intron 25.0%
! ACATATGGATATGAATTGTA+GGG + chr5_1:8109814-8109833 Msa0715180:intron 25.0%
!!! GTTTAATGCACTTTTTGTAA+TGG + chr5_1:8110117-8110136 Msa0715180:intron 25.0%
! CATTCAAAACTTAATACCAT+AGG - chr5_1:8110404-8110423 None:intergenic 25.0%
!!! ATTAAGTTTTGAATGAGACA+CGG + chr5_1:8110409-8110428 Msa0715180:intron 25.0%
! AAACCATAAATGAATACCAA+GGG - chr5_1:8110454-8110473 None:intergenic 25.0%
! AAAACCATAAATGAATACCA+AGG - chr5_1:8110455-8110474 None:intergenic 25.0%
!!! TTGTTTTGTGTTTATATGAG+TGG + chr5_1:8110705-8110724 Msa0715180:intron 25.0%
!! TGTTTTGTGTTTATATGAGT+GGG + chr5_1:8110706-8110725 Msa0715180:intron 25.0%
! ATATCGATATTGCTTTATCT+AGG - chr5_1:8110773-8110792 None:intergenic 25.0%
! TTCTGAATTTATGTGGAATA+AGG - chr5_1:8110879-8110898 None:intergenic 25.0%
!!! TATTTATTTTACTGCTTACG+AGG + chr5_1:8111143-8111162 Msa0715180:intron 25.0%
! TTCTTTCACTACATAAAAGT+TGG + chr5_1:8111327-8111346 Msa0715180:intron 25.0%
! CTTGTGGAATGTAAAATATA+GGG - chr5_1:8111381-8111400 None:intergenic 25.0%
!! CTATATTTTACATTCCACAA+GGG + chr5_1:8111380-8111399 Msa0715180:intron 25.0%
! AAATGAATATTTCCAGAAAG+AGG - chr5_1:8111460-8111479 None:intergenic 25.0%
!! CGAATTTAAAACTGTTTGTT+TGG + chr5_1:8111486-8111505 Msa0715180:intron 25.0%
! GTTTGGATAAAATATGTGAA+CGG - chr5_1:8111562-8111581 None:intergenic 25.0%
! AAAAAAATTACCAATCGTGA+AGG - chr5_1:8111720-8111739 None:intergenic 25.0%
!!! GACACTAAAACTTGTTAAAA+AGG - chr5_1:8112370-8112389 None:intergenic 25.0%
! AAAGAGCTCAATTTCAATTT+GGG - chr5_1:8112655-8112674 None:intergenic 25.0%
! TAAAGAGCTCAATTTCAATT+TGG - chr5_1:8112656-8112675 None:intergenic 25.0%
! AATAAGAAAGTAGAGATTGA+GGG - chr5_1:8112760-8112779 None:intergenic 25.0%
! AAATAAGAAAGTAGAGATTG+AGG - chr5_1:8112761-8112780 None:intergenic 25.0%
!! TTGTAAAGTACTTTGGTATT+TGG + chr5_1:8112833-8112852 Msa0715180:intron 25.0%
!! TGTAAAGTACTTTGGTATTT+GGG + chr5_1:8112834-8112853 Msa0715180:intron 25.0%
!!! TAAACTTTTTGAAAACCCAT+CGG + chr5_1:8112881-8112900 Msa0715180:intron 25.0%
!!! TTTTCTTTCCCTTATTTGTT+AGG + chr5_1:8112945-8112964 Msa0715180:intron 25.0%
! AACATACACCTAACAAATAA+GGG - chr5_1:8112956-8112975 None:intergenic 25.0%
! AAACATACACCTAACAAATA+AGG - chr5_1:8112957-8112976 None:intergenic 25.0%
!! ATTTAGAGTTATTGCATTAG+AGG + chr5_1:8113041-8113060 Msa0715180:intron 25.0%
! AGAAGAAGACAAAAAACTAT+AGG + chr5_1:8113065-8113084 Msa0715180:intron 25.0%
! CTATCATAAATCATGTCTAT+AGG - chr5_1:8113117-8113136 None:intergenic 25.0%
! TATAGACTTAAGAGTCTATT+AGG - chr5_1:8113297-8113316 None:intergenic 25.0%
! ACAAAATCTATAAATCTTGG+AGG - chr5_1:8113391-8113410 None:intergenic 25.0%
! TTTCATTATAGGTTTGTCAA+TGG + chr5_1:8113829-8113848 Msa0715180:three_prime_UTR 25.0%
! TTCATTATAGGTTTGTCAAT+GGG + chr5_1:8113830-8113849 Msa0715180:three_prime_UTR 25.0%
! TATTCTTTCGATCATTAAGA+TGG + chr5_1:8113876-8113895 Msa0715180:three_prime_UTR 25.0%
! TTACCCATAAAATAGGTTAT+TGG + chr5_1:8113974-8113993 Msa0715180:three_prime_UTR 25.0%
! TACCCATAAAATAGGTTATT+GGG + chr5_1:8113975-8113994 Msa0715180:three_prime_UTR 25.0%
!! ATCCCAATAACCTATTTTAT+GGG - chr5_1:8113980-8113999 None:intergenic 25.0%
!! AATCCCAATAACCTATTTTA+TGG - chr5_1:8113981-8114000 None:intergenic 25.0%
AAAAAGAAGAGAAGAGAACA+TGG + chr5_1:8107985-8108004 Msa0715180:exon 30.0%
AGAAAATGGAATTAGGAAGA+AGG - chr5_1:8108135-8108154 None:intergenic 30.0%
CTTCATTCATTCTTTGTAAC+AGG + chr5_1:8108176-8108195 Msa0715180:intron 30.0%
CCTTCTATTGAATAAGAGAT+TGG - chr5_1:8108249-8108268 None:intergenic 30.0%
CCAATCTCTTATTCAATAGA+AGG + chr5_1:8108246-8108265 Msa0715180:CDS 30.0%
! TAAACTAGCTTATCTGCTAT+CGG - chr5_1:8108572-8108591 None:intergenic 30.0%
GTGATTGAATTTGTAGTGTT+TGG + chr5_1:8108614-8108633 Msa0715180:intron 30.0%
ATGACTAAAAAAGACCCATT+TGG - chr5_1:8108843-8108862 None:intergenic 30.0%
! GTTGTTATTATTGGTTAGTG+CGG + chr5_1:8108971-8108990 Msa0715180:intron 30.0%
! TTGTTATTATTGGTTAGTGC+GGG + chr5_1:8108972-8108991 Msa0715180:intron 30.0%
! CAATTTAAGAGTTTTCTGGA+AGG - chr5_1:8109305-8109324 None:intergenic 30.0%
!!! TAATTTTTTTTTGGCATGGC+AGG + chr5_1:8109429-8109448 Msa0715180:intron 30.0%
!!! AATTTTTTTTTGGCATGGCA+GGG + chr5_1:8109430-8109449 Msa0715180:intron 30.0%
!! TGATTTGGTGATTGAACATA+TGG + chr5_1:8109799-8109818 Msa0715180:intron 30.0%
TATGAATTGTAGGGTTATCA+TGG + chr5_1:8109823-8109842 Msa0715180:intron 30.0%
! CAGTCCAGTTTTCAAAATAT+TGG + chr5_1:8110049-8110068 Msa0715180:intron 30.0%
GAATTCATTATGAAAACCTG+AGG + chr5_1:8110139-8110158 Msa0715180:intron 30.0%
TTCAGATATTGTGCTAACAA+AGG + chr5_1:8110217-8110236 Msa0715180:intron 30.0%
! GAATGCTTTTATATTCCCTT+TGG + chr5_1:8110239-8110258 Msa0715180:intron 30.0%
TTTCATATACTCGTTCCAAA+GGG - chr5_1:8110257-8110276 None:intergenic 30.0%
! TTTTCATATACTCGTTCCAA+AGG - chr5_1:8110258-8110277 None:intergenic 30.0%
AGCTACTCTACTGTATTATA+TGG + chr5_1:8110285-8110304 Msa0715180:intron 30.0%
AATACCATAGGATATTCTAC+TGG - chr5_1:8110392-8110411 None:intergenic 30.0%
TATCCCTTGGTATTCATTTA+TGG + chr5_1:8110448-8110467 Msa0715180:intron 30.0%
ATACAATTTCCAGGAATAAG+TGG - chr5_1:8110504-8110523 None:intergenic 30.0%
TTATGGGATATACAATTTCC+AGG - chr5_1:8110513-8110532 None:intergenic 30.0%
TTTGGTAAAACGTTAGTCAA+CGG - chr5_1:8110539-8110558 None:intergenic 30.0%
! GTTTTGTGTTTATATGAGTG+GGG + chr5_1:8110707-8110726 Msa0715180:intron 30.0%
GACCTGTATCAATCAAATAA+GGG - chr5_1:8110739-8110758 None:intergenic 30.0%
TGACCTGTATCAATCAAATA+AGG - chr5_1:8110740-8110759 None:intergenic 30.0%
GAACATCTTACTGAATTGTT+CGG - chr5_1:8110827-8110846 None:intergenic 30.0%
! AGAGGTTTTCTGAATTTATG+TGG - chr5_1:8110886-8110905 None:intergenic 30.0%
ACATAAATTCAGAAAACCTC+TGG + chr5_1:8110885-8110904 Msa0715180:intron 30.0%
AGTGATCATGCAGATAAATA+TGG + chr5_1:8110949-8110968 Msa0715180:intron 30.0%
CATGCAGATAAATATGGATA+TGG + chr5_1:8110955-8110974 Msa0715180:CDS 30.0%
ATGATATTGTGCATAGACTA+AGG + chr5_1:8111269-8111288 Msa0715180:intron 30.0%
TGATATTGTGCATAGACTAA+GGG + chr5_1:8111270-8111289 Msa0715180:intron 30.0%
CCTTGTGGAATGTAAAATAT+AGG - chr5_1:8111382-8111401 None:intergenic 30.0%
! CCTATATTTTACATTCCACA+AGG + chr5_1:8111379-8111398 Msa0715180:intron 30.0%
TATAACAGTATAAGCTAGCA+GGG - chr5_1:8111419-8111438 None:intergenic 30.0%
ACAAACATAACTCTGAATAG+AGG - chr5_1:8111631-8111650 None:intergenic 30.0%
TTAAATCAAACCTTCACGAT+TGG + chr5_1:8111707-8111726 Msa0715180:CDS 30.0%
ATGATTATTGTTTGCAAAGC+TGG + chr5_1:8111778-8111797 Msa0715180:intron 30.0%
!! TTGTTTTCTGTTGCATTGAT+TGG + chr5_1:8111822-8111841 Msa0715180:intron 30.0%
!!! TGTTTTCTGTTGCATTGATT+GGG + chr5_1:8111823-8111842 Msa0715180:intron 30.0%
AAAGGAAAGAGAATTTCTCA+AGG - chr5_1:8112022-8112041 None:intergenic 30.0%
CAAATTTAAATTTGGCAGTG+TGG - chr5_1:8112141-8112160 None:intergenic 30.0%
CACACTGCCAAATTTAAATT+TGG + chr5_1:8112139-8112158 Msa0715180:intron 30.0%
GCAGCTTCCAAATTTAAATT+TGG - chr5_1:8112149-8112168 None:intergenic 30.0%
AAATAAGTGGCTTACATACA+TGG - chr5_1:8112216-8112235 None:intergenic 30.0%
! TGTATGTAAGCCACTTATTT+TGG + chr5_1:8112216-8112235 Msa0715180:intron 30.0%
CACAATTACTCCAAAATAAG+TGG - chr5_1:8112229-8112248 None:intergenic 30.0%
AACTGCCTTTGAATTTACAT+AGG + chr5_1:8112252-8112271 Msa0715180:intron 30.0%
CTTAGCCTATGTAAATTCAA+AGG - chr5_1:8112260-8112279 None:intergenic 30.0%
TGAAAATGATCTGACAATGA+AGG - chr5_1:8112602-8112621 None:intergenic 30.0%
! TCAGATCATTTTCACCTTAA+AGG + chr5_1:8112608-8112627 Msa0715180:intron 30.0%
!! TTTTGAAAACATGACACCAA+GGG - chr5_1:8112812-8112831 None:intergenic 30.0%
!! ATTTTGAAAACATGACACCA+AGG - chr5_1:8112813-8112832 None:intergenic 30.0%
! GTAAAGTACTTTGGTATTTG+GGG + chr5_1:8112835-8112854 Msa0715180:intron 30.0%
TAGTTCATGATGTCTATATG+AGG + chr5_1:8112904-8112923 Msa0715180:intron 30.0%
AGTTCATGATGTCTATATGA+GGG + chr5_1:8112905-8112924 Msa0715180:intron 30.0%
! ACAATGTTGCATTTTATGAG+CGG + chr5_1:8112999-8113018 Msa0715180:intron 30.0%
ACTATAGGCTAAAGATTTAG+AGG + chr5_1:8113080-8113099 Msa0715180:intron 30.0%
!! ATCACATTTTGAAGAAACTG+TGG + chr5_1:8113238-8113257 Msa0715180:intron 30.0%
CTCACTAAAGCAAGTTTAAA+GGG - chr5_1:8113360-8113379 None:intergenic 30.0%
TCTCACTAAAGCAAGTTTAA+AGG - chr5_1:8113361-8113380 None:intergenic 30.0%
TAGGTTCTGTAAAATTTACC+AGG - chr5_1:8113448-8113467 None:intergenic 30.0%
! GGATCTTTTACCCATAAAAT+AGG + chr5_1:8113967-8113986 Msa0715180:three_prime_UTR 30.0%
CTGTTAAAGTCTTCTTTCAC+CGG + chr5_1:8108034-8108053 Msa0715180:CDS 35.0%
! ACCATGGATTTTACATATGG+AGG - chr5_1:8108356-8108375 None:intergenic 35.0%
! GGAACCATGGATTTTACATA+TGG - chr5_1:8108359-8108378 None:intergenic 35.0%
ACCTGAAGTACATGATGAAA+AGG + chr5_1:8108397-8108416 Msa0715180:CDS 35.0%
CCTGAAGTACATGATGAAAA+GGG + chr5_1:8108398-8108417 Msa0715180:CDS 35.0%
CTGAAGTACATGATGAAAAG+GGG + chr5_1:8108399-8108418 Msa0715180:CDS 35.0%
ATTGAATGTATGAGAGCTTC+TGG + chr5_1:8108422-8108441 Msa0715180:CDS 35.0%
ATTCAATCACCTAGCTTATC+TGG - chr5_1:8108604-8108623 None:intergenic 35.0%
TTACAATCCTAAGACACGTA+GGG - chr5_1:8108926-8108945 None:intergenic 35.0%
ATTACAATCCTAAGACACGT+AGG - chr5_1:8108927-8108946 None:intergenic 35.0%
!!! ATTTTTGCTTTTTGTTCGGG+TGG + chr5_1:8109458-8109477 Msa0715180:intron 35.0%
!!! TTTTTGCTTTTTGTTCGGGT+GGG + chr5_1:8109459-8109478 Msa0715180:intron 35.0%
CAACAATATAGCACAAGAAG+AGG - chr5_1:8109575-8109594 None:intergenic 35.0%
CTCTTCTTGTGCTATATTGT+TGG + chr5_1:8109573-8109592 Msa0715180:intron 35.0%
TTCTTGTGCTATATTGTTGG+AGG + chr5_1:8109576-8109595 Msa0715180:intron 35.0%
TCTTGTGCTATATTGTTGGA+GGG + chr5_1:8109577-8109596 Msa0715180:intron 35.0%
! ACATCGACAACTTTCTTTTG+CGG + chr5_1:8109850-8109869 Msa0715180:CDS 35.0%
TGAGGCTAAAAAACTAGTTC+AGG + chr5_1:8109885-8109904 Msa0715180:CDS 35.0%
! GGATTTTAGATTACTTGGTC+TGG + chr5_1:8110088-8110107 Msa0715180:intron 35.0%
! GATAGCTTTACAGTTTACGT+TGG - chr5_1:8110370-8110389 None:intergenic 35.0%
CTATCCAGTAGAATATCCTA+TGG + chr5_1:8110385-8110404 Msa0715180:intron 35.0%
GTATAAGGAAGAATATCCCT+TGG + chr5_1:8110435-8110454 Msa0715180:intron 35.0%
!! CGTTAGTCAACGGATTTTAT+GGG - chr5_1:8110529-8110548 None:intergenic 35.0%
!! ACGTTAGTCAACGGATTTTA+TGG - chr5_1:8110530-8110549 None:intergenic 35.0%
TGGATGTTGAGATACTATTC+TGG + chr5_1:8110609-8110628 Msa0715180:intron 35.0%
TAAACACAAAACAAATGGCG+AGG - chr5_1:8110699-8110718 None:intergenic 35.0%
! CTCCCTTATTTGATTGATAC+AGG + chr5_1:8110734-8110753 Msa0715180:intron 35.0%
TGCTTTATCTAGGCATTCTT+TGG - chr5_1:8110763-8110782 None:intergenic 35.0%
! ATTTTCTTGTATTCCACTCC+AGG - chr5_1:8110801-8110820 None:intergenic 35.0%
GGAGTGGAATACAAGAAAAT+TGG + chr5_1:8110801-8110820 Msa0715180:CDS 35.0%
GAATAAGGAAATGCAGGAAT+GGG - chr5_1:8110864-8110883 None:intergenic 35.0%
TATGTGGAATAAGGAAATGC+AGG - chr5_1:8110870-8110889 None:intergenic 35.0%
TGATGAATCATATAGTCCAG+AGG - chr5_1:8110904-8110923 None:intergenic 35.0%
TTACTGAAGTGCAGAATAAC+TGG - chr5_1:8111033-8111052 None:intergenic 35.0%
GATATTGTGCATAGACTAAG+GGG + chr5_1:8111271-8111290 Msa0715180:intron 35.0%
! GGCTTGTTTGTCAAGTTTAA+TGG - chr5_1:8111360-8111379 None:intergenic 35.0%
GTATAACAGTATAAGCTAGC+AGG - chr5_1:8111420-8111439 None:intergenic 35.0%
TGATATATTCCACCTCTTTC+TGG + chr5_1:8111445-8111464 Msa0715180:intron 35.0%
TGAATATTTCCAGAAAGAGG+TGG - chr5_1:8111457-8111476 None:intergenic 35.0%
!!! GGCAAAAGTATTTTGAGGTT+TGG - chr5_1:8111579-8111598 None:intergenic 35.0%
AGAAAAGCAATCACATCTGA+CGG - chr5_1:8111601-8111620 None:intergenic 35.0%
!! TTTTCAGGAAACAACGAAGA+TGG + chr5_1:8111674-8111693 Msa0715180:intron 35.0%
AAGGAAAGCGAAATGATGAA+AGG - chr5_1:8112003-8112022 None:intergenic 35.0%
AATTCTCTTTCCTTTCCACT+TGG + chr5_1:8112027-8112046 Msa0715180:intron 35.0%
ATTCTCTTTCCTTTCCACTT+GGG + chr5_1:8112028-8112047 Msa0715180:intron 35.0%
! TTGGACGTGTGAACTTTTAT+TGG - chr5_1:8112110-8112129 None:intergenic 35.0%
AGTTCACACGTCCAAAAATA+TGG + chr5_1:8112115-8112134 Msa0715180:intron 35.0%
!!! GTCGCTAACTGTTTTAATTG+TGG + chr5_1:8112387-8112406 Msa0715180:intron 35.0%
!!! GCTAACTGTTTTAATTGTGG+AGG + chr5_1:8112390-8112409 Msa0715180:intron 35.0%
!!! ACTGTTTTAATTGTGGAGGA+TGG + chr5_1:8112394-8112413 Msa0715180:intron 35.0%
TATATAGAGGGTAGTGAAAG+TGG + chr5_1:8112420-8112439 Msa0715180:intron 35.0%
CTAGCGCTTGGTAAAAATAA+TGG + chr5_1:8112484-8112503 Msa0715180:intron 35.0%
TCTTGGTATGATTGAACAGT+AGG + chr5_1:8112532-8112551 Msa0715180:intron 35.0%
CTTGGTATGATTGAACAGTA+GGG + chr5_1:8112533-8112552 Msa0715180:intron 35.0%
AATGATCTGACAATGAAGGA+TGG - chr5_1:8112598-8112617 None:intergenic 35.0%
! TATCTGCTACTTCTCCTTTA+AGG - chr5_1:8112625-8112644 None:intergenic 35.0%
GATTGAGGGAATGGAAAATT+TGG - chr5_1:8112746-8112765 None:intergenic 35.0%
TATAAGCTAAAGCAAGTTCC+AGG + chr5_1:8112780-8112799 Msa0715180:intron 35.0%
GCGGAAATATTAGATGAGAT+AGG + chr5_1:8113018-8113037 Msa0715180:intron 35.0%
CATGTCTATAGGCAAACTAT+TGG - chr5_1:8113106-8113125 None:intergenic 35.0%
AACAAAACCTTATTCCAGCA+GGG - chr5_1:8113178-8113197 None:intergenic 35.0%
! CAAGAACTTTGATCTGAAAC+TGG - chr5_1:8113688-8113707 None:intergenic 35.0%
TTTCAGATCAAAGTTCTTGC+TGG + chr5_1:8113689-8113708 Msa0715180:three_prime_UTR 35.0%
GCACATGCTTCTTATAACTT+GGG - chr5_1:8113721-8113740 None:intergenic 35.0%
ATACAACACTGTGACTCATT+TGG - chr5_1:8113743-8113762 None:intergenic 35.0%
ATGGGTAAAAGATCCAAAGA+GGG - chr5_1:8113962-8113981 None:intergenic 35.0%
TATGGGTAAAAGATCCAAAG+AGG - chr5_1:8113963-8113982 None:intergenic 35.0%
GTAGGAAGAAAGGAAACACA+TGG + chr5_1:8107929-8107948 Msa0715180:five_prime_UTR 40.0%
AAGAGAAGAGAACATGGCTA+TGG + chr5_1:8107991-8108010 Msa0715180:exon 40.0%
ATAGTTGAGGAAGTGATTGG+TGG - chr5_1:8108084-8108103 None:intergenic 40.0%
GGAATAGTTGAGGAAGTGAT+TGG - chr5_1:8108087-8108106 None:intergenic 40.0%
! TGTCTGTAACGGAATAGTTG+AGG - chr5_1:8108097-8108116 None:intergenic 40.0%
CAACTATTCCGTTACAGACA+AGG + chr5_1:8108097-8108116 Msa0715180:CDS 40.0%
GGTTGAAACCTTGTCTGTAA+CGG - chr5_1:8108108-8108127 None:intergenic 40.0%
TGGAATTAGGAAGAAGGAGA+AGG - chr5_1:8108129-8108148 None:intergenic 40.0%
GCCTCCATATGTAAAATCCA+TGG + chr5_1:8108352-8108371 Msa0715180:CDS 40.0%
! CCCTTTTCATCATGTACTTC+AGG - chr5_1:8108401-8108420 None:intergenic 40.0%
AATGTATGAGAGCTTCTGGA+AGG + chr5_1:8108426-8108445 Msa0715180:CDS 40.0%
ATAGAAACGCACCTTGACTA+AGG - chr5_1:8108483-8108502 None:intergenic 40.0%
TATATCATCCTTGAAGCGAG+TGG - chr5_1:8108518-8108537 None:intergenic 40.0%
TAGCTGATACCAGATAAGCT+AGG + chr5_1:8108592-8108611 Msa0715180:intron 40.0%
AAATAACCTATAAGCTCGCG+AGG + chr5_1:8108805-8108824 Msa0715180:intron 40.0%
AGGAAGTAACGGTTACCAAA+TGG + chr5_1:8108825-8108844 Msa0715180:intron 40.0%
GGAAGTAACGGTTACCAAAT+GGG + chr5_1:8108826-8108845 Msa0715180:intron 40.0%
TAAGACACGTAGGGTGTATT+TGG - chr5_1:8108917-8108936 None:intergenic 40.0%
AAATACACCCTACGTGTCTT+AGG + chr5_1:8108916-8108935 Msa0715180:intron 40.0%
! TTATTGGTTAGTGCGGGAAA+AGG + chr5_1:8108978-8108997 Msa0715180:intron 40.0%
! TTTAACTTCTGTTGACAGCC+AGG + chr5_1:8109120-8109139 Msa0715180:intron 40.0%
ATTTCATCAGTCGTTATGCC+TGG - chr5_1:8109141-8109160 None:intergenic 40.0%
ACAGATGTGCATACACTCTT+TGG - chr5_1:8109234-8109253 None:intergenic 40.0%
GTGAATGAATGCATTTGCCA+TGG + chr5_1:8109252-8109271 Msa0715180:CDS 40.0%
AACGTGAATCTGGTATTCCA+TGG - chr5_1:8109272-8109291 None:intergenic 40.0%
!!! TTTTGCTTTTTGTTCGGGTG+GGG + chr5_1:8109460-8109479 Msa0715180:intron 40.0%
CTTGTGCTATATTGTTGGAG+GGG + chr5_1:8109578-8109597 Msa0715180:intron 40.0%
! CATCGACAACTTTCTTTTGC+GGG + chr5_1:8109851-8109870 Msa0715180:CDS 40.0%
! ATCGACAACTTTCTTTTGCG+GGG + chr5_1:8109852-8109871 Msa0715180:CDS 40.0%
TCGTTGGCATGAAGATAAAC+TGG - chr5_1:8109913-8109932 None:intergenic 40.0%
GTTTATCTTCATGCCAACGA+TGG + chr5_1:8109913-8109932 Msa0715180:intron 40.0%
TGAACCGTGAACTAGTTCAA+TGG + chr5_1:8110025-8110044 Msa0715180:intron 40.0%
CTGACCATTGAACTAGTTCA+CGG - chr5_1:8110032-8110051 None:intergenic 40.0%
AACCTGAGGAATTACAGAGA+AGG + chr5_1:8110153-8110172 Msa0715180:intron 40.0%
ACCTGAGGAATTACAGAGAA+GGG + chr5_1:8110154-8110173 Msa0715180:intron 40.0%
GGGTCTAAATCCTTAGAGTA+AGG + chr5_1:8110175-8110194 Msa0715180:intron 40.0%
CTAGGTAAGTCCTTACTCTA+AGG - chr5_1:8110188-8110207 None:intergenic 40.0%
AATGAGACACGGAGTGTATA+AGG + chr5_1:8110420-8110439 Msa0715180:intron 40.0%
GGAATGGGAGAACAAATGAT+AGG - chr5_1:8110849-8110868 None:intergenic 40.0%
GGAATAAGGAAATGCAGGAA+TGG - chr5_1:8110865-8110884 None:intergenic 40.0%
TTCCACAAGGGAAAAACCAA+AGG + chr5_1:8111392-8111411 Msa0715180:intron 40.0%
!!! TGACGGGCAAAAGTATTTTG+AGG - chr5_1:8111584-8111603 None:intergenic 40.0%
GAAAAGCAATCACATCTGAC+GGG - chr5_1:8111600-8111619 None:intergenic 40.0%
GTTGAAATTCCCAAGTGGAA+AGG - chr5_1:8112040-8112059 None:intergenic 40.0%
CCTGTTTATTAAGCTACGCA+AGG - chr5_1:8112062-8112081 None:intergenic 40.0%
CCTTGCGTAGCTTAATAAAC+AGG + chr5_1:8112059-8112078 Msa0715180:intron 40.0%
GATACTACCCACATACCATA+TGG + chr5_1:8112180-8112199 Msa0715180:intron 40.0%
TACCCACATACCATATGGAT+AGG + chr5_1:8112185-8112204 Msa0715180:intron 40.0%
TGCCTATCCATATGGTATGT+GGG - chr5_1:8112190-8112209 None:intergenic 40.0%
ATGCCTATCCATATGGTATG+TGG - chr5_1:8112191-8112210 None:intergenic 40.0%
AATTGCAACAGCTCAGATGT+GGG + chr5_1:8112307-8112326 Msa0715180:intron 40.0%
TGGAGGATGGTACTATATAG+AGG + chr5_1:8112407-8112426 Msa0715180:intron 40.0%
GGAGGATGGTACTATATAGA+GGG + chr5_1:8112408-8112427 Msa0715180:intron 40.0%
! TTTTACCAAGCGCTAGATCA+GGG - chr5_1:8112480-8112499 None:intergenic 40.0%
! TTTTTACCAAGCGCTAGATC+AGG - chr5_1:8112481-8112500 None:intergenic 40.0%
AGGAGAAGTAGCAGATATTG+TGG + chr5_1:8112628-8112647 Msa0715180:intron 40.0%
GAAAGTAGAGATTGAGGGAA+TGG - chr5_1:8112755-8112774 None:intergenic 40.0%
AAGTTCCAGGAATATACCCT+TGG + chr5_1:8112793-8112812 Msa0715180:intron 40.0%
AGACATCATGAACTACCGAT+GGG - chr5_1:8112899-8112918 None:intergenic 40.0%
TAGACATCATGAACTACCGA+TGG - chr5_1:8112900-8112919 None:intergenic 40.0%
ACAAAACCTTATTCCAGCAG+GGG - chr5_1:8113177-8113196 None:intergenic 40.0%
CAACAAAACCTTATTCCAGC+AGG - chr5_1:8113179-8113198 None:intergenic 40.0%
! TACAGAACCTATGCTGACTA+TGG + chr5_1:8113457-8113476 Msa0715180:intron 40.0%
! ACAGAACCTATGCTGACTAT+GGG + chr5_1:8113458-8113477 Msa0715180:intron 40.0%
CAATTGTCTTTCCACATCAC+TGG - chr5_1:8113494-8113513 None:intergenic 40.0%
CAGTGATGTGGAAAGACAAT+TGG + chr5_1:8113492-8113511 Msa0715180:CDS 40.0%
TGGACAGTTGTAACAGAAGA+TGG + chr5_1:8113512-8113531 Msa0715180:CDS 40.0%
TGTGTTCAAACTGAGCTGAA+AGG - chr5_1:8113541-8113560 None:intergenic 40.0%
!! ACCCTTTTGATAACACCTGA+TGG + chr5_1:8113560-8113579 Msa0715180:CDS 40.0%
! CCCATCAGGTGTTATCAAAA+GGG - chr5_1:8113564-8113583 None:intergenic 40.0%
!! CCCTTTTGATAACACCTGAT+GGG + chr5_1:8113561-8113580 Msa0715180:CDS 40.0%
!! CCTTTTGATAACACCTGATG+GGG + chr5_1:8113562-8113581 Msa0715180:CDS 40.0%
GGCACATGCTTCTTATAACT+TGG - chr5_1:8113722-8113741 None:intergenic 40.0%
ATAGGTTTGTCAATGGGTAG+AGG + chr5_1:8113836-8113855 Msa0715180:three_prime_UTR 40.0%
TAGGTTTGTCAATGGGTAGA+GGG + chr5_1:8113837-8113856 Msa0715180:three_prime_UTR 40.0%
CAGTTACCTCGATCACTTTC+TGG + chr5_1:8108218-8108237 Msa0715180:CDS 45.0%
GTTAAGCCAGAAAGTGATCG+AGG - chr5_1:8108227-8108246 None:intergenic 45.0%
AGGTCTCAAGCGTTTACGAT+TGG - chr5_1:8108288-8108307 None:intergenic 45.0%
AATCGTAAACGCTTGAGACC+TGG + chr5_1:8108287-8108306 Msa0715180:CDS 45.0%
!! GGAGGCTTTGTTATGTCCTT+GGG - chr5_1:8108338-8108357 None:intergenic 45.0%
!! TGGAGGCTTTGTTATGTCCT+TGG - chr5_1:8108339-8108358 None:intergenic 45.0%
TAAAATCCATGGTTCCGCCA+GGG + chr5_1:8108363-8108382 Msa0715180:CDS 45.0%
TTACTTCCTCGCGAGCTTAT+AGG - chr5_1:8108814-8108833 None:intergenic 45.0%
ATAAGCTCGCGAGGAAGTAA+CGG + chr5_1:8108814-8108833 Msa0715180:intron 45.0%
GGAAAACCACCATAACCAAG+AGG - chr5_1:8109213-8109232 None:intergenic 45.0%
ACTACTGTACTACTGAGACG+AGG - chr5_1:8109526-8109545 None:intergenic 45.0%
! GGACATAAGCGTTGTAAGCA+GGG - chr5_1:8109554-8109573 None:intergenic 45.0%
! AGGACATAAGCGTTGTAAGC+AGG - chr5_1:8109555-8109574 None:intergenic 45.0%
TGCTATATTGTTGGAGGGGA+CGG + chr5_1:8109582-8109601 Msa0715180:intron 45.0%
AATAACAGGGCACAGACGTA+TGG - chr5_1:8109964-8109983 None:intergenic 45.0%
CCTGAGGAATTACAGAGAAG+GGG + chr5_1:8110155-8110174 Msa0715180:intron 45.0%
TAGCAGGGCAGTAAGTAACT+AGG + chr5_1:8110329-8110348 Msa0715180:intron 45.0%
! TACGTTGGCACAAGTACTGT+AGG - chr5_1:8110355-8110374 None:intergenic 45.0%
GGAGATGTACCACTTATTCC+TGG + chr5_1:8110492-8110511 Msa0715180:intron 45.0%
GCAATATCGATATGTGCACC+TGG + chr5_1:8110780-8110799 Msa0715180:CDS 45.0%
! GGTGTTGTGCAACAGTTTGT+TGG + chr5_1:8110976-8110995 Msa0715180:CDS 45.0%
!! TGCAACAGTTTGTTGGCCAT+GGG + chr5_1:8110983-8111002 Msa0715180:CDS 45.0%
TGCATAGACTAAGGGGTTGA+AGG + chr5_1:8111278-8111297 Msa0715180:intron 45.0%
ATAGACTAAGGGGTTGAAGG+AGG + chr5_1:8111281-8111300 Msa0715180:intron 45.0%
!!! GACCTTTGGTTTTTCCCTTG+TGG - chr5_1:8111397-8111416 None:intergenic 45.0%
TATAAGCTAGCAGGGACCTT+TGG - chr5_1:8111411-8111430 None:intergenic 45.0%
GCAAGGTTGAAATTCCCAAG+TGG - chr5_1:8112045-8112064 None:intergenic 45.0%
! TGGCAGTGTGGCCATATTTT+TGG - chr5_1:8112129-8112148 None:intergenic 45.0%
CATGGCAATGCCTATCCATA+TGG - chr5_1:8112198-8112217 None:intergenic 45.0%
GAATTGCAACAGCTCAGATG+TGG + chr5_1:8112306-8112325 Msa0715180:intron 45.0%
ATTGCAACAGCTCAGATGTG+GGG + chr5_1:8112308-8112327 Msa0715180:intron 45.0%
GTAGTGAAAGTGGAGTGGAA+TGG + chr5_1:8112430-8112449 Msa0715180:intron 45.0%
GAAAGTGGAGTGGAATGGAA+TGG + chr5_1:8112435-8112454 Msa0715180:intron 45.0%
! TGACACCAAGGGTATATTCC+TGG - chr5_1:8112801-8112820 None:intergenic 45.0%
CAAAACCTTATTCCAGCAGG+GGG - chr5_1:8113176-8113195 None:intergenic 45.0%
! CCCCATCAGGTGTTATCAAA+AGG - chr5_1:8113565-8113584 None:intergenic 45.0%
TCAATGGGTAGAGGGAGATT+AGG + chr5_1:8113845-8113864 Msa0715180:three_prime_UTR 45.0%
ATAGCGTATTGCTCCCTCTT+TGG + chr5_1:8113946-8113965 Msa0715180:three_prime_UTR 45.0%
!!! TTATCATTTTTAAAAATTAA+AGG - chr5_1:8111190-8111209 None:intergenic 5.0%
!! TTCAATATAATATAATATAA+GGG - chr5_1:8111526-8111545 None:intergenic 5.0%
!! TTTCAATATAATATAATATA+AGG - chr5_1:8111527-8111546 None:intergenic 5.0%
GCAGCGAAAGAATCGATCTC+CGG - chr5_1:8108056-8108075 None:intergenic 50.0%
CGACGTGGAGAAACAATTCC+AGG - chr5_1:8108308-8108327 None:intergenic 50.0%
TCCACGTCGAAAAGTTCCCA+AGG + chr5_1:8108319-8108338 Msa0715180:CDS 50.0%
! TCCTTGGGAACTTTTCGACG+TGG - chr5_1:8108323-8108342 None:intergenic 50.0%
GTAAAATCCATGGTTCCGCC+AGG + chr5_1:8108362-8108381 Msa0715180:CDS 50.0%
GCTCAGGTTCTTCAGTATGC+TGG + chr5_1:8108455-8108474 Msa0715180:CDS 50.0%
GTATGCTGGCACCTTAGTCA+AGG + chr5_1:8108469-8108488 Msa0715180:CDS 50.0%
!! CTTTTTCGCCACTCGCTTCA+AGG + chr5_1:8108507-8108526 Msa0715180:intron 50.0%
TACCCGTCTCCTCTTGGTTA+TGG + chr5_1:8109201-8109220 Msa0715180:CDS 50.0%
CACCATAACCAAGAGGAGAC+GGG - chr5_1:8109206-8109225 None:intergenic 50.0%
CCACCATAACCAAGAGGAGA+CGG - chr5_1:8109207-8109226 None:intergenic 50.0%
ACCAGATTCACGTTCGCTTG+AGG + chr5_1:8109278-8109297 Msa0715180:CDS 50.0%
ACCTCAAGCGAACGTGAATC+TGG - chr5_1:8109282-8109301 None:intergenic 50.0%
TATATTGTTGGAGGGGACGG+AGG + chr5_1:8109585-8109604 Msa0715180:intron 50.0%
!! TTGCGGGGATGTTGATGATG+AGG + chr5_1:8109867-8109886 Msa0715180:CDS 50.0%
TGCCAACGATGGCTGTGATT+TGG + chr5_1:8109924-8109943 Msa0715180:intron 50.0%
CACCAAATCACAGCCATCGT+TGG - chr5_1:8109929-8109948 None:intergenic 50.0%
CCCCTTCTCTGTAATTCCTC+AGG - chr5_1:8110158-8110177 None:intergenic 50.0%
ATCGATATGTGCACCTGGAG+TGG + chr5_1:8110785-8110804 Msa0715180:CDS 50.0%
!! GTGCAACAGTTTGTTGGCCA+TGG + chr5_1:8110982-8111001 Msa0715180:CDS 50.0%
!! GCAACAGTTTGTTGGCCATG+GGG + chr5_1:8110984-8111003 Msa0715180:CDS 50.0%
GAAAAACACGTCCAACCCCA+TGG - chr5_1:8111002-8111021 None:intergenic 50.0%
TAAGGGGTTGAAGGAGGCAA+GGG + chr5_1:8111287-8111306 Msa0715180:intron 50.0%
AACAGCTCAGATGTGGGGAA+GGG + chr5_1:8112313-8112332 Msa0715180:intron 50.0%
AGAGGGTAGTGAAAGTGGAG+TGG + chr5_1:8112425-8112444 Msa0715180:intron 50.0%
AGCAGGGGGAATCAGCTATA+TGG - chr5_1:8113162-8113181 None:intergenic 50.0%
! ATATAGCTGATTCCCCCTGC+TGG + chr5_1:8113161-8113180 Msa0715180:intron 50.0%
TGATTCCCCCTGCTGGAATA+AGG + chr5_1:8113168-8113187 Msa0715180:intron 50.0%
ATGCTGCCCATAGTCAGCAT+AGG - chr5_1:8113467-8113486 None:intergenic 50.0%
GCAGCATCAATCCAGTGATG+TGG + chr5_1:8113480-8113499 Msa0715180:CDS 50.0%
GTCATAATCTCAGCCCCATC+AGG - chr5_1:8113578-8113597 None:intergenic 50.0%
!! TTCTGGAAGGCTTGCTGCTC+AGG + chr5_1:8108439-8108458 Msa0715180:CDS 55.0%
CCGTCTCCTCTTGGTTATGG+TGG + chr5_1:8109204-8109223 Msa0715180:CDS 55.0%
!! TGCTTTTTGTTCGGGTGGGG+AGG + chr5_1:8109463-8109482 Msa0715180:intron 55.0%
! GCTTTTTGTTCGGGTGGGGA+GGG + chr5_1:8109464-8109483 Msa0715180:intron 55.0%
! CTTTTTGTTCGGGTGGGGAG+GGG + chr5_1:8109465-8109484 Msa0715180:intron 55.0%
! TTTTTGTTCGGGTGGGGAGG+GGG + chr5_1:8109466-8109485 Msa0715180:intron 55.0%
!! CAGTTTGTTGGCCATGGGGT+TGG + chr5_1:8110988-8111007 Msa0715180:CDS 55.0%
CTAAGGGGTTGAAGGAGGCA+AGG + chr5_1:8111286-8111305 Msa0715180:intron 55.0%
GGTTGAAGGAGGCAAGGGTT+TGG + chr5_1:8111292-8111311 Msa0715180:intron 55.0%
CAACAGCTCAGATGTGGGGA+AGG + chr5_1:8112312-8112331 Msa0715180:intron 55.0%
ACAGCTCAGATGTGGGGAAG+GGG + chr5_1:8112314-8112333 Msa0715180:intron 55.0%
TGACTCCCTGATCTAGCGCT+TGG + chr5_1:8112472-8112491 Msa0715180:intron 55.0%
TCAGGTCCACTCGCAATCCC+TGG - chr5_1:8108383-8108402 None:intergenic 60.0%
! AGATGTGGGGAAGGGGTGCA+TGG + chr5_1:8112321-8112340 Msa0715180:intron 60.0%
! GATGTGGGGAAGGGGTGCAT+GGG + chr5_1:8112322-8112341 Msa0715180:intron 60.0%
CAGTGACACGCTGCTGCTCG+CGG - chr5_1:8108017-8108036 None:intergenic 65.0%
CGCAATCCCTGGCGGAACCA+TGG - chr5_1:8108372-8108391 None:intergenic 65.0%
GTTCCGCCAGGGATTGCGAG+TGG + chr5_1:8108374-8108393 Msa0715180:CDS 65.0%
GGTCCACTCGCAATCCCTGG+CGG - chr5_1:8108380-8108399 None:intergenic 65.0%
GGTGCGTACCCGTCTCCTCT+TGG + chr5_1:8109195-8109214 Msa0715180:CDS 65.0%
!! GTGGGGAGGGGGACTAGTCA+TGG + chr5_1:8109477-8109496 Msa0715180:intron 65.0%
TGTTGGAGGGGACGGAGGCT+AGG + chr5_1:8109590-8109609 Msa0715180:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 8107880 8114043 8107880 ID=Msa0715180;Name=Msa0715180
chr5_1 mRNA 8107880 8114043 8107880 ID=Msa0715180-mRNA-1;Parent=Msa0715180;Name=Msa0715180-mRNA-1;_AED=0.02;_eAED=0.02;_QI=124|1|1|1|1|1|9|436|351
chr5_1 exon 8107880 8108118 8107880 ID=Msa0715180-mRNA-1:exon:3325;Parent=Msa0715180-mRNA-1
chr5_1 exon 8108198 8108490 8108198 ID=Msa0715180-mRNA-1:exon:3326;Parent=Msa0715180-mRNA-1
chr5_1 exon 8109138 8109299 8109138 ID=Msa0715180-mRNA-1:exon:3327;Parent=Msa0715180-mRNA-1
chr5_1 exon 8109377 8109418 8109377 ID=Msa0715180-mRNA-1:exon:3328;Parent=Msa0715180-mRNA-1
chr5_1 exon 8109835 8109906 8109835 ID=Msa0715180-mRNA-1:exon:3329;Parent=Msa0715180-mRNA-1
chr5_1 exon 8110756 8110835 8110756 ID=Msa0715180-mRNA-1:exon:3330;Parent=Msa0715180-mRNA-1
chr5_1 exon 8110951 8111048 8110951 ID=Msa0715180-mRNA-1:exon:3331;Parent=Msa0715180-mRNA-1
chr5_1 exon 8111681 8111728 8111681 ID=Msa0715180-mRNA-1:exon:3332;Parent=Msa0715180-mRNA-1
chr5_1 exon 8113462 8114043 8113462 ID=Msa0715180-mRNA-1:exon:3333;Parent=Msa0715180-mRNA-1
chr5_1 five_prime_UTR 8107880 8108003 8107880 ID=Msa0715180-mRNA-1:five_prime_utr;Parent=Msa0715180-mRNA-1
chr5_1 CDS 8108004 8108118 8108004 ID=Msa0715180-mRNA-1:cds;Parent=Msa0715180-mRNA-1
chr5_1 CDS 8108198 8108490 8108198 ID=Msa0715180-mRNA-1:cds;Parent=Msa0715180-mRNA-1
chr5_1 CDS 8109138 8109299 8109138 ID=Msa0715180-mRNA-1:cds;Parent=Msa0715180-mRNA-1
chr5_1 CDS 8109377 8109418 8109377 ID=Msa0715180-mRNA-1:cds;Parent=Msa0715180-mRNA-1
chr5_1 CDS 8109835 8109906 8109835 ID=Msa0715180-mRNA-1:cds;Parent=Msa0715180-mRNA-1
chr5_1 CDS 8110756 8110835 8110756 ID=Msa0715180-mRNA-1:cds;Parent=Msa0715180-mRNA-1
chr5_1 CDS 8110951 8111048 8110951 ID=Msa0715180-mRNA-1:cds;Parent=Msa0715180-mRNA-1
chr5_1 CDS 8111681 8111728 8111681 ID=Msa0715180-mRNA-1:cds;Parent=Msa0715180-mRNA-1
chr5_1 CDS 8113462 8113607 8113462 ID=Msa0715180-mRNA-1:cds;Parent=Msa0715180-mRNA-1
chr5_1 three_prime_UTR 8113608 8114043 8113608 ID=Msa0715180-mRNA-1:three_prime_utr;Parent=Msa0715180-mRNA-1
Gene Sequence

>Msa0715180

ATGGCTATGGCCGCGAGCAGCAGCGTGTCACTGTTAAAGTCTTCTTTCACCGGAGATCGATTCTTTCGCTGCTCACGCCACCAATCACTTCCTCAACTATTCCGTTACAGACAAGGAATGAATCATTTTTCGATGCAGTTACCTCGATCACTTTCTGGCTTAACCAATCTCTTATTCAATAGAAGGAACATCGATGACAATACCAATCGTAAACGCTTGAGACCTGGAATTGTTTCTCCACGTCGAAAAGTTCCCAAGGACATAACAAAGCCTCCATATGTAAAATCCATGGTTCCGCCAGGGATTGCGAGTGGACCTGAAGTACATGATGAAAAGGGGATTGAATGTATGAGAGCTTCTGGAAGGCTTGCTGCTCAGGTTCTTCAGTATGCTGGCACCTTAGTCAAGCCAGGCATAACGACTGATGAAATTGACGAAGCAGTTCACCAAATGATAATTGATAATGGTGCGTACCCGTCTCCTCTTGGTTATGGTGGTTTTCCAAAGAGTGTATGCACATCTGTGAATGAATGCATTTGCCATGGAATACCAGATTCACGTTCGCTTGAGGATGGTGATATAATCAACATTGATGTTACCGTTTATCTAAATGGTTATCATGGTGACACATCGACAACTTTCTTTTGCGGGGATGTTGATGATGAGGCTAAAAAACTAGTTCAGGTCACCAAAGAATGCCTAGATAAAGCAATATCGATATGTGCACCTGGAGTGGAATACAAGAAAATTGGCCGAACAATTCATGATCATGCAGATAAATATGGATATGGTGTTGTGCAACAGTTTGTTGGCCATGGGGTTGGACGTGTTTTTCATGCTGATCCAGTTATTCTGCACTTCAGAAACAACGAAGATGGACGTATGATGTTAAATCAAACCTTCACGATTGAACCTATGCTGACTATGGGCAGCATCAATCCAGTGATGTGGAAAGACAATTGGACAGTTGTAACAGAAGATGGAAGCCTTTCAGCTCAGTTTGAACACACCCTTTTGATAACACCTGATGGGGCTGAGATTATGACTCAATGCTGA

Protein sequence

>Msa0715180

MAMAASSSVSLLKSSFTGDRFFRCSRHQSLPQLFRYRQGMNHFSMQLPRSLSGLTNLLFNRRNIDDNTNRKRLRPGIVSPRRKVPKDITKPPYVKSMVPPGIASGPEVHDEKGIECMRASGRLAAQVLQYAGTLVKPGITTDEIDEAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRSLEDGDIINIDVTVYLNGYHGDTSTTFFCGDVDDEAKKLVQVTKECLDKAISICAPGVEYKKIGRTIHDHADKYGYGVVQQFVGHGVGRVFHADPVILHFRNNEDGRMMLNQTFTIEPMLTMGSINPVMWKDNWTVVTEDGSLSAQFEHTLLITPDGAEIMTQC*