Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0043070 | sp|Q94G17|TATC_PEA | 89.802 | 353 | 32 | 2 | 1 | 349 | 1 | 353 | 0.0 | 588 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004340 | Msa0043070 | 0.806109 | 9.649652e-50 | -8.615850e-47 |
| Msa0038750 | Msa0043070 | 0.812745 | 3.631895e-51 | -8.615850e-47 |
| Msa0042240 | Msa0043070 | 0.806916 | 6.518517e-50 | -8.615850e-47 |
| Msa0043070 | Msa0046050 | 0.861535 | 9.581137e-64 | -8.615850e-47 |
| Msa0043070 | Msa0065400 | 0.811292 | 7.531767e-51 | -8.615850e-47 |
| Msa0043070 | Msa0116950 | 0.812843 | 3.456394e-51 | -8.615850e-47 |
| Msa0043070 | Msa0132920 | 0.829893 | 3.989966e-55 | -8.615850e-47 |
| Msa0043070 | Msa0137010 | 0.820163 | 7.928840e-53 | -8.615850e-47 |
| Msa0043070 | Msa0147540 | 0.800561 | 1.360163e-48 | -8.615850e-47 |
| Msa0043070 | Msa0160470 | 0.814352 | 1.609345e-51 | -8.615850e-47 |
| Msa0043070 | Msa0163300 | 0.809387 | 1.939986e-50 | -8.615850e-47 |
| Msa0043070 | Msa0186380 | 0.803816 | 2.910553e-49 | -8.615850e-47 |
| Msa0043070 | Msa0197730 | 0.824934 | 6.166005e-54 | -8.615850e-47 |
| Msa0043070 | Msa0203330 | 0.820487 | 6.683108e-53 | -8.615850e-47 |
| Msa0043070 | Msa0239980 | 0.818321 | 2.083682e-52 | -8.615850e-47 |
| Msa0043070 | Msa0329060 | 0.805680 | 1.187768e-49 | -8.615850e-47 |
| Msa0043070 | Msa0375570 | 0.811823 | 5.774366e-51 | -8.615850e-47 |
| Msa0043070 | Msa0385870 | 0.820563 | 6.421748e-53 | -8.615850e-47 |
| Msa0043070 | Msa0418790 | 0.803640 | 3.165248e-49 | -8.615850e-47 |
| Msa0043070 | Msa0420280 | 0.818573 | 1.826412e-52 | -8.615850e-47 |
| Msa0043070 | Msa0424220 | 0.815813 | 7.628758e-52 | -8.615850e-47 |
| Msa0043070 | Msa0437790 | 0.851873 | 6.681428e-61 | -8.615850e-47 |
| Msa0043070 | Msa0464730 | 0.800938 | 1.139496e-48 | -8.615850e-47 |
| Msa0043070 | Msa0476140 | 0.807477 | 4.960072e-50 | -8.615850e-47 |
| Msa0043070 | Msa0485210 | 0.805255 | 1.458107e-49 | -8.615850e-47 |
| Msa0043070 | Msa0519060 | 0.817894 | 2.602466e-52 | -8.615850e-47 |
| Msa0043070 | Msa0525800 | 0.811337 | 7.363032e-51 | -8.615850e-47 |
| Msa0043070 | Msa0532880 | 0.837637 | 4.621431e-57 | -8.615850e-47 |
| Msa0043070 | Msa0589540 | 0.802592 | 5.213636e-49 | -8.615850e-47 |
| Msa0043070 | Msa0617120 | 0.816634 | 4.999179e-52 | -8.615850e-47 |
| Msa0043070 | Msa0630090 | 0.818017 | 2.440613e-52 | -8.615850e-47 |
| Msa0043070 | Msa0657300 | 0.802194 | 6.299459e-49 | -8.615850e-47 |
| Msa0043070 | Msa0681100 | 0.807655 | 4.546108e-50 | -8.615850e-47 |
| Msa0043070 | Msa0702360 | 0.807448 | 5.030072e-50 | -8.615850e-47 |
| Msa0043070 | Msa0702560 | 0.819211 | 1.308477e-52 | -8.615850e-47 |
| Msa0043070 | Msa0705810 | 0.808874 | 2.499634e-50 | -8.615850e-47 |
| Msa0043070 | Msa0719330 | 0.800095 | 1.692141e-48 | -8.615850e-47 |
| Msa0043070 | Msa0776290 | 0.808241 | 3.410815e-50 | -8.615850e-47 |
| Msa0043070 | Msa0876030 | 0.818956 | 1.495039e-52 | -8.615850e-47 |
| Msa0043070 | Msa0975550 | 0.806718 | 7.180598e-50 | -8.615850e-47 |
| Msa0043070 | Msa1028780 | 0.837098 | 6.350661e-57 | -8.615850e-47 |
| Msa0043070 | Msa1057320 | 0.808631 | 2.817371e-50 | -8.615850e-47 |
| Msa0043070 | Msa1088690 | 0.805774 | 1.134576e-49 | -8.615850e-47 |
| Msa0043070 | Msa1140480 | 0.827895 | 1.214864e-54 | -8.615850e-47 |
| Msa0043070 | Msa1178980 | 0.802358 | 5.825802e-49 | -8.615850e-47 |
| Msa0043070 | Msa1182530 | 0.802130 | 6.490470e-49 | -8.615850e-47 |
| Msa0043070 | Msa1202220 | 0.826767 | 2.264632e-54 | -8.615850e-47 |
| Msa0043070 | Msa1224820 | 0.812362 | 4.403881e-51 | -8.615850e-47 |
| Msa0043070 | Msa1243630 | 0.802795 | 4.734047e-49 | -8.615850e-47 |
| Msa0043070 | Msa1244220 | 0.805618 | 1.223768e-49 | -8.615850e-47 |
| Msa0043070 | Msa1263970 | 0.806356 | 8.558485e-50 | -8.615850e-47 |
| Msa0043070 | Msa1270860 | 0.814821 | 1.267684e-51 | -8.615850e-47 |
| Msa0043070 | Msa1286470 | 0.801484 | 8.808995e-49 | -8.615850e-47 |
| Msa0043070 | Msa1299900 | 0.805852 | 1.092988e-49 | -8.615850e-47 |
| Msa0043070 | Msa1308010 | 0.827868 | 1.233574e-54 | -8.615850e-47 |
| Msa0043070 | Msa1335210 | 0.834118 | 3.606116e-56 | -8.615850e-47 |
| Msa0043070 | Msa1350350 | 0.822067 | 2.888540e-53 | -8.615850e-47 |
| Msa0043070 | Msa1363690 | -0.813064 | 3.092555e-51 | -8.615850e-47 |
| Msa0043070 | Msa1369180 | 0.819022 | 1.444796e-52 | -8.615850e-47 |
| Msa0043070 | Msa1369390 | 0.829347 | 5.416432e-55 | -8.615850e-47 |
| Msa0043070 | Msa1373390 | 0.864172 | 1.472557e-64 | -8.615850e-47 |
| Msa0043070 | Msa1396550 | -0.804040 | 2.614474e-49 | -8.615850e-47 |
| Msa0043070 | Msa1420600 | 0.847620 | 1.030858e-59 | -8.615850e-47 |
| Msa0043070 | Msa1425540 | 0.845598 | 3.674968e-59 | -8.615850e-47 |
| Msa0043070 | Msa1427600 | 0.828070 | 1.102599e-54 | -8.615850e-47 |
| Msa0043070 | Msa1450780 | 0.815249 | 1.018553e-51 | -8.615850e-47 |
| Msa0043070 | Msa1453540 | 0.807512 | 4.875659e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0043070 | MtrunA17_Chr1g0208921 | 95.129 | 349 | 11 | 1 | 1 | 349 | 1 | 343 | 0.0 | 659 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0043070 | AT2G01110.1 | 70.625 | 320 | 75 | 3 | 30 | 349 | 40 | 340 | 5.24e-151 | 429 |
Find 106 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTCTCGTGGTGCAGGTTTC+TGG | 0.175531 | 1_1:-74030088 | Msa0043070:intron |
| CTTCTAGCAGCACCATTATT+AGG | 0.229476 | 1_1:-74028918 | Msa0043070:CDS |
| AGGAGTTGGAGGAAGCATTT+TGG | 0.229964 | 1_1:-74030757 | Msa0043070:CDS |
| GCCAAGGCCTGGTGGAATTT+AGG | 0.240581 | 1_1:+74028699 | None:intergenic |
| AGAATCTTTATATCAGTTCT+AGG | 0.249354 | 1_1:-74030777 | Msa0043070:CDS |
| TGCTTAAACTGAACTTCTTT+TGG | 0.249858 | 1_1:+74028832 | None:intergenic |
| ACCGATTATACAACTTCTAT+TGG | 0.263487 | 1_1:-74029057 | Msa0043070:CDS |
| TGACCCGATTATGAGCTAAA+TGG | 0.282917 | 1_1:+74031760 | None:intergenic |
| TTCCACCAGGCCTTGGCATT+TGG | 0.296857 | 1_1:-74028693 | Msa0043070:three_prime_UTR |
| CGAAGAAGTAATAAGAGTTT+TGG | 0.297387 | 1_1:-74031705 | Msa0043070:CDS |
| CAGTACAGGCTTGTCTTTCC+AGG | 0.298487 | 1_1:-74029804 | Msa0043070:intron |
| CGTTAGACCTGGAATTATAA+AGG | 0.303877 | 1_1:+74030015 | None:intergenic |
| GGACAACTTGGATTGGTTAC+TGG | 0.310168 | 1_1:-74029035 | Msa0043070:CDS |
| TCAATACTTTGAGTTTGTTC+TGG | 0.314656 | 1_1:-74029837 | Msa0043070:CDS |
| ATGAATATCCTTCCTCAGTT+CGG | 0.317891 | 1_1:-74031795 | Msa0043070:CDS |
| TGGATATTGTGGCCTTCTCT+TGG | 0.323792 | 1_1:-74030068 | Msa0043070:CDS |
| ATCATAGCCTTTATAATTCC+AGG | 0.326206 | 1_1:-74030022 | Msa0043070:CDS |
| GCATGGATGGTCAAACTTGC+TGG | 0.332429 | 1_1:-74028879 | Msa0043070:CDS |
| CTTACTGGGTCTTTCTTCAA+TGG | 0.334299 | 1_1:+74031599 | None:intergenic |
| TCCCATACGGCGTTTATGTT+TGG | 0.339910 | 1_1:+74031839 | None:intergenic |
| CGGAATAACCTTCTCCTACT+TGG | 0.346691 | 1_1:-74029933 | Msa0043070:CDS |
| AACCTTCTCCTACTTGGTTC+TGG | 0.358897 | 1_1:-74029927 | Msa0043070:CDS |
| TGAATATCCTTCCTCAGTTC+GGG | 0.363168 | 1_1:-74031794 | Msa0043070:CDS |
| AATCGGGTCAACAACTCTTC+CGG | 0.366696 | 1_1:-74031747 | Msa0043070:CDS |
| GAACCCATTTAGCTCATAAT+CGG | 0.370721 | 1_1:-74031764 | Msa0043070:CDS |
| TTTATATCAGTTCTAGGAGT+TGG | 0.372808 | 1_1:-74030771 | Msa0043070:CDS |
| TCCTAAATTCCACCAGGCCT+TGG | 0.374237 | 1_1:-74028700 | Msa0043070:three_prime_UTR |
| AACTCGTACTAAGCTGTTGT+TGG | 0.379029 | 1_1:+74031640 | None:intergenic |
| TTCTTTGTCGAAGCTCTTCA+AGG | 0.382875 | 1_1:+74030796 | None:intergenic |
| ATCGGGTCAACAACTCTTCC+GGG | 0.383529 | 1_1:-74031746 | Msa0043070:CDS |
| CAAGTAGGAGAAGGTTATTC+CGG | 0.387764 | 1_1:+74029934 | None:intergenic |
| TCAGGAAGAAGCTCTTTATC+AGG | 0.389696 | 1_1:+74030846 | None:intergenic |
| CCCAATAGAAGTTGTATAAT+CGG | 0.391969 | 1_1:+74029056 | None:intergenic |
| CCGATTATACAACTTCTATT+GGG | 0.394706 | 1_1:-74029056 | Msa0043070:CDS |
| GGTTCTCGTTAGATACGATT+TGG | 0.401877 | 1_1:+74031885 | None:intergenic |
| GGATATTGTGGCCTTCTCTT+GGG | 0.412223 | 1_1:-74030067 | Msa0043070:CDS |
| CAACTTCTATTGGGACAACT+TGG | 0.415318 | 1_1:-74029047 | Msa0043070:CDS |
| ATGATTTCATAGAGAATGAT+AGG | 0.415949 | 1_1:+74030040 | None:intergenic |
| ACATAAACGCCGTATGGGAT+TGG | 0.416626 | 1_1:-74031835 | Msa0043070:exon |
| ATGCTCATTTCTTTATCATC+AGG | 0.420227 | 1_1:+74030828 | None:intergenic |
| AAAGATATGCTTGATGGTAT+AGG | 0.428767 | 1_1:-74030933 | Msa0043070:intron |
| CTGGTTCTTATGTTCAGTAC+AGG | 0.435069 | 1_1:-74029818 | Msa0043070:CDS |
| GACAATAAAGATATGCTTGA+TGG | 0.441520 | 1_1:-74030939 | Msa0043070:intron |
| TCGTTAGATACGATTTGGTT+TGG | 0.442344 | 1_1:+74031890 | None:intergenic |
| GACCCGATTATGAGCTAAAT+GGG | 0.443412 | 1_1:+74031761 | None:intergenic |
| CATAAACGCCGTATGGGATT+GGG | 0.445231 | 1_1:-74031834 | Msa0043070:exon |
| AACCAAACATAAACGCCGTA+TGG | 0.454018 | 1_1:-74031841 | Msa0043070:exon |
| GTCTTTACCTAGGTGGTGCA+TGG | 0.454573 | 1_1:-74028896 | Msa0043070:CDS |
| AGATTTCTTCAGCTAGCTCC+TGG | 0.459845 | 1_1:-74030669 | Msa0043070:CDS |
| GAGACCGGATGCTATCAGTT+TGG | 0.466801 | 1_1:-74029013 | Msa0043070:CDS |
| CCTAGGTAAAGACCTAATAA+TGG | 0.468369 | 1_1:+74028906 | None:intergenic |
| CACCAGGCCTTGGCATTTGG+AGG | 0.472494 | 1_1:-74028690 | None:intergenic |
| TAAATCAATTAATAGAATAC+AGG | 0.474864 | 1_1:+74028743 | None:intergenic |
| CTGACACCCTCTGATTGAAC+AGG | 0.476792 | 1_1:+74030690 | None:intergenic |
| ACTGATGAGCCTAAAACAAT+TGG | 0.477239 | 1_1:+74029968 | None:intergenic |
| AACTGAGGAAGGATATTCAT+AGG | 0.479717 | 1_1:+74031798 | None:intergenic |
| TTCTTTGTCAATTATGCTGA+AGG | 0.481146 | 1_1:-74029887 | Msa0043070:CDS |
| TTACCTAGGTGGTGCATGGA+TGG | 0.481523 | 1_1:-74028892 | Msa0043070:CDS |
| CTTTCAGCTTTCGTTAGACC+TGG | 0.483102 | 1_1:+74030004 | None:intergenic |
| TCTATTGGGACAACTTGGAT+TGG | 0.484052 | 1_1:-74029042 | Msa0043070:CDS |
| ACAAAGAAATTTAATGCTGC+GGG | 0.490001 | 1_1:+74029902 | None:intergenic |
| ATATCAGTTCTAGGAGTTGG+AGG | 0.501945 | 1_1:-74030768 | Msa0043070:CDS |
| GATTATGAGCTAAATGGGTT+CGG | 0.514586 | 1_1:+74031766 | None:intergenic |
| ACGAGAACCAACCGTTGGAC+AGG | 0.520567 | 1_1:-74031871 | Msa0043070:five_prime_UTR |
| TACCTCCAAATGCCAAGGCC+TGG | 0.522561 | 1_1:+74028688 | None:intergenic |
| AAACTCAAAGTATTGATCAA+TGG | 0.524905 | 1_1:+74029844 | None:intergenic |
| AACCCATTTAGCTCATAATC+GGG | 0.525966 | 1_1:-74031763 | Msa0043070:CDS |
| GACAAAGAAATTTAATGCTG+CGG | 0.531903 | 1_1:+74029901 | None:intergenic |
| AGAGAGAGGGAAGCTGAACC+CGG | 0.534179 | 1_1:+74031728 | None:intergenic |
| ACCTCCAAACTGATAGCATC+CGG | 0.541278 | 1_1:+74029009 | None:intergenic |
| ATACAGGAAGAGTAATGCTC+TGG | 0.541662 | 1_1:+74028759 | None:intergenic |
| ACCAAACATAAACGCCGTAT+GGG | 0.545286 | 1_1:-74031840 | Msa0043070:exon |
| TTGGATTGGTTACTGGAGAC+CGG | 0.547880 | 1_1:-74029028 | Msa0043070:CDS |
| TGGTATAGGTGAAGAAACAT+TGG | 0.554885 | 1_1:-74030919 | Msa0043070:CDS |
| GTCTAACGAAAGCTGAAAGA+AGG | 0.555459 | 1_1:-74030000 | Msa0043070:CDS |
| CGTAGTAGTCGGAGCAGTAG+TGG | 0.558016 | 1_1:-74028985 | Msa0043070:CDS |
| TTATTACTTCTTCGAGAGAG+AGG | 0.560020 | 1_1:+74031714 | None:intergenic |
| TGAAGCTCCTGTTCAATCAG+AGG | 0.565387 | 1_1:-74030697 | Msa0043070:CDS |
| TATTACTTCTTCGAGAGAGA+GGG | 0.570542 | 1_1:+74031715 | None:intergenic |
| AGTACGAGTTCAACTAGACT+TGG | 0.576801 | 1_1:-74031627 | Msa0043070:CDS |
| ACTGGGTCTTTCTTCAATGG+CGG | 0.583374 | 1_1:+74031602 | None:intergenic |
| CTCCAAATGCCAAGGCCTGG+TGG | 0.584016 | 1_1:+74028691 | None:intergenic |
| TGGCGGTTCCCAATCCCATA+CGG | 0.588062 | 1_1:+74031826 | None:intergenic |
| ACCGGATGCTATCAGTTTGG+AGG | 0.588400 | 1_1:-74029010 | Msa0043070:CDS |
| GCTAGAAGAACTTGAGTGAG+AGG | 0.588816 | 1_1:+74028933 | None:intergenic |
| GTGCAGGTTTCTGGATATTG+TGG | 0.589310 | 1_1:-74030079 | Msa0043070:intron |
| TGATAGGACTTCCCAAGAGA+AGG | 0.590331 | 1_1:+74030056 | None:intergenic |
| CATGGATGGTCAAACTTGCT+GGG | 0.591514 | 1_1:-74028878 | Msa0043070:CDS |
| GGAGCAACCCGAACTGAGGA+AGG | 0.591542 | 1_1:+74031787 | None:intergenic |
| ATCTAACGAGAACCAACCGT+TGG | 0.603068 | 1_1:-74031876 | Msa0043070:five_prime_UTR |
| AGGAAGAGTAATGCTCTGGT+AGG | 0.605861 | 1_1:+74028763 | None:intergenic |
| CCATTATTAGGTCTTTACCT+AGG | 0.610016 | 1_1:-74028906 | Msa0043070:CDS |
| AGTTATTCCTAAATTCCACC+AGG | 0.610116 | 1_1:-74028706 | Msa0043070:three_prime_UTR |
| GAAGCTCCTGTTCAATCAGA+GGG | 0.614527 | 1_1:-74030696 | Msa0043070:CDS |
| GTTTGGAGGTACGTAGTAGT+CGG | 0.615457 | 1_1:-74028996 | Msa0043070:CDS |
| TTATTAGGTCTTTACCTAGG+TGG | 0.622151 | 1_1:-74028903 | Msa0043070:CDS |
| AGGAATACCTCCAAATGCCA+AGG | 0.623816 | 1_1:+74028683 | None:intergenic |
| AACTTGAGTGAGAGGATCTG+TGG | 0.626725 | 1_1:+74028941 | None:intergenic |
| TACCAGAACCAAGTAGGAGA+AGG | 0.629321 | 1_1:+74029925 | None:intergenic |
| TGACCATCCATGCACCACCT+AGG | 0.640535 | 1_1:+74028889 | None:intergenic |
| TGCGGGTACCAGAACCAAGT+AGG | 0.676319 | 1_1:+74029919 | None:intergenic |
| AAGGATATTCATAGGAACAG+TGG | 0.679790 | 1_1:+74031806 | None:intergenic |
| GTTCGGAGCAACCCGAACTG+AGG | 0.682822 | 1_1:+74031783 | None:intergenic |
| TGAGTGAGAGGATCTGTGGA+TGG | 0.685947 | 1_1:+74028945 | None:intergenic |
| GATATTCATAGGAACAGTGG+CGG | 0.714235 | 1_1:+74031809 | None:intergenic |
| AAGGTGCTGTTGAATCACTG+TGG | 0.719291 | 1_1:-74029868 | Msa0043070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTAGTTTGTTTTTATT+GGG | - | chr1_1:74030212-74030231 | Msa0043070:intron | 10.0% |
| !!! | TGTATTTTATATTTATCATT+GGG | + | chr1_1:74030953-74030972 | None:intergenic | 10.0% |
| !!! | TTGTATTTTATATTTATCAT+TGG | + | chr1_1:74030954-74030973 | None:intergenic | 10.0% |
| !!! | TTTTAGTTACTATATATTAT+AGG | + | chr1_1:74031294-74031313 | None:intergenic | 10.0% |
| !! | CTTGTTAAATTAAGAAAAAT+GGG | + | chr1_1:74029060-74029079 | None:intergenic | 15.0% |
| !!! | ACTTGTTAAATTAAGAAAAA+TGG | + | chr1_1:74029061-74029080 | None:intergenic | 15.0% |
| !! | ATTATTTGAACTTATATTCT+TGG | + | chr1_1:74029584-74029603 | None:intergenic | 15.0% |
| !!! | TAAAAATTTTACCTTTAAAG+TGG | + | chr1_1:74030003-74030022 | None:intergenic | 15.0% |
| !! | CAATAAAAACAAACTAATTA+TGG | + | chr1_1:74030213-74030232 | None:intergenic | 15.0% |
| !!! | CATAATTAGTTTGTTTTTAT+TGG | - | chr1_1:74030211-74030230 | Msa0043070:intron | 15.0% |
| !!! | TAATTAGTTTGTTTTTATTG+GGG | - | chr1_1:74030213-74030232 | Msa0043070:intron | 15.0% |
| !! | TTACATTCATAATTAATCAT+TGG | - | chr1_1:74030348-74030367 | Msa0043070:intron | 15.0% |
| !! | TAAATCAATTAATAGAATAC+AGG | + | chr1_1:74031892-74031911 | None:intergenic | 15.0% |
| !!! | AGAAACATTGGAAAATTTTA+AGG | - | chr1_1:74029725-74029744 | Msa0043070:intron | 20.0% |
| !!! | ATTTTTACTCAAAATATCTC+CGG | - | chr1_1:74030016-74030035 | Msa0043070:CDS | 20.0% |
| !!! | GAATGTAATATTTTATTTCC+TGG | - | chr1_1:74030075-74030094 | Msa0043070:CDS | 20.0% |
| !!! | AAATTTGACTTCTCTAAAAT+AGG | + | chr1_1:74030417-74030436 | None:intergenic | 20.0% |
| !!! | ATTTTAGAGAAGTCAAATTT+AGG | - | chr1_1:74030417-74030436 | Msa0043070:intron | 20.0% |
| !! | TAGTAACTAAAAAAAAGACT+TGG | - | chr1_1:74031302-74031321 | Msa0043070:intron | 20.0% |
| !!! | ATTTTTATGTAAATTCACAC+AGG | - | chr1_1:74031824-74031843 | Msa0043070:CDS | 20.0% |
| !!! | TTTTAGTTTTTTGCCTTCAT+AGG | - | chr1_1:74029080-74029099 | Msa0043070:intron | 25.0% |
| ! | CAAATAATTCATTGATGAGA+CGG | - | chr1_1:74029175-74029194 | Msa0043070:intron | 25.0% |
| ! | TTACAAGATAGTTTATGAAG+AGG | + | chr1_1:74029377-74029396 | None:intergenic | 25.0% |
| ! | TGTAAACCTTGAAAATAAGT+TGG | - | chr1_1:74029392-74029411 | Msa0043070:intron | 25.0% |
| !!! | TTGTTTCCAACTTATTTTCA+AGG | + | chr1_1:74029401-74029420 | None:intergenic | 25.0% |
| ! | TCAAATAAGCTAATTCGAAT+GGG | - | chr1_1:74029491-74029510 | Msa0043070:intron | 25.0% |
| !!! | TTGGAAAATTTTAAGGAAGA+TGG | - | chr1_1:74029732-74029751 | Msa0043070:intron | 25.0% |
| ! | AGAATCTTTATATCAGTTCT+AGG | - | chr1_1:74029855-74029874 | Msa0043070:CDS | 25.0% |
| !! | CTTTGCATTTTCAAAAGATT+TGG | - | chr1_1:74029902-74029921 | Msa0043070:CDS | 25.0% |
| !! | ATTTTTCTTCACCACTTTAA+AGG | - | chr1_1:74029989-74030008 | Msa0043070:CDS | 25.0% |
| !! | TTTTTACTCAAAATATCTCC+GGG | - | chr1_1:74030017-74030036 | Msa0043070:CDS | 25.0% |
| ! | AAACTAATTATGGCAGAAAA+TGG | + | chr1_1:74030203-74030222 | None:intergenic | 25.0% |
| ! | GTAATGGTTATATCATACAA+AGG | + | chr1_1:74030479-74030498 | None:intergenic | 25.0% |
| ! | AGTTTGATCATGATTTAGAT+GGG | + | chr1_1:74030513-74030532 | None:intergenic | 25.0% |
| ! | TAGTTTGATCATGATTTAGA+TGG | + | chr1_1:74030514-74030533 | None:intergenic | 25.0% |
| ! | TGATCAAACTAATATTGTTG+TGG | - | chr1_1:74030523-74030542 | Msa0043070:intron | 25.0% |
| ! | ATGATTTCATAGAGAATGAT+AGG | + | chr1_1:74030595-74030614 | None:intergenic | 25.0% |
| !!! | AAACTCAAAGTATTGATCAA+TGG | + | chr1_1:74030791-74030810 | None:intergenic | 25.0% |
| !!! | TTCCTTTCTTTTTGACTATA+TGG | - | chr1_1:74030875-74030894 | Msa0043070:CDS | 25.0% |
| ! | TACCATATAGTCAAAAAGAA+AGG | + | chr1_1:74030880-74030899 | None:intergenic | 25.0% |
| ! | TATATTTATCATTGGGTCAA+TGG | + | chr1_1:74030946-74030965 | None:intergenic | 25.0% |
| !!! | AAGATGCTTGAAAGTTTTAA+AGG | - | chr1_1:74031213-74031232 | Msa0043070:intron | 25.0% |
| !!! | AACTTCTTTTGGTAATATGT+GGG | + | chr1_1:74031792-74031811 | None:intergenic | 25.0% |
| ! | CGAAGAAGTAATAAGAGTTT+TGG | - | chr1_1:74028927-74028946 | Msa0043070:CDS | 30.0% |
| TAAGAAAAATGGGTCTTACT+GGG | + | chr1_1:74029050-74029069 | None:intergenic | 30.0% | |
| TTAAGAAAAATGGGTCTTAC+TGG | + | chr1_1:74029051-74029070 | None:intergenic | 30.0% | |
| GATAAGCTGCTTAATTAAGT+TGG | - | chr1_1:74029112-74029131 | Msa0043070:intron | 30.0% | |
| CGTCTCATCAATGAATTATT+TGG | + | chr1_1:74029177-74029196 | None:intergenic | 30.0% | |
| TCTTGAGAGATTATGGAAAT+AGG | - | chr1_1:74029234-74029253 | Msa0043070:intron | 30.0% | |
| TTGGAAACAACTTACAGATA+AGG | - | chr1_1:74029411-74029430 | Msa0043070:intron | 30.0% | |
| ACAACTTACAGATAAGGATA+TGG | - | chr1_1:74029417-74029436 | Msa0043070:intron | 30.0% | |
| ! | AGCTTATTTGAGTTATGTAC+TGG | + | chr1_1:74029482-74029501 | None:intergenic | 30.0% |
| CTCAAATAAGCTAATTCGAA+TGG | - | chr1_1:74029490-74029509 | Msa0043070:intron | 30.0% | |
| TCATTAACTAAGAGTCTGTT+TGG | + | chr1_1:74029613-74029632 | None:intergenic | 30.0% | |
| GACAATAAAGATATGCTTGA+TGG | - | chr1_1:74029693-74029712 | Msa0043070:intron | 30.0% | |
| ! | AAAGATATGCTTGATGGTAT+AGG | - | chr1_1:74029699-74029718 | Msa0043070:intron | 30.0% |
| ATGCTCATTTCTTTATCATC+AGG | + | chr1_1:74029807-74029826 | None:intergenic | 30.0% | |
| !! | TTTATATCAGTTCTAGGAGT+TGG | - | chr1_1:74029861-74029880 | Msa0043070:CDS | 30.0% |
| !!! | CATTTTCAAAAGATTTGGTG+AGG | - | chr1_1:74029907-74029926 | Msa0043070:CDS | 30.0% |
| ! | TTTTACTCAAAATATCTCCG+GGG | - | chr1_1:74030018-74030037 | Msa0043070:CDS | 30.0% |
| TATTACATTCACAACTCACT+AGG | + | chr1_1:74030065-74030084 | None:intergenic | 30.0% | |
| GCATTTCATGTGAAGTTTAA+AGG | - | chr1_1:74030101-74030120 | Msa0043070:intron | 30.0% | |
| ! | TCTAAAATAGGTAGTTGGTA+AGG | + | chr1_1:74030405-74030424 | None:intergenic | 30.0% |
| !! | ACTTCTCTAAAATAGGTAGT+TGG | + | chr1_1:74030410-74030429 | None:intergenic | 30.0% |
| TTAGAGAAGTCAAATTTAGG+AGG | - | chr1_1:74030420-74030439 | Msa0043070:intron | 30.0% | |
| TAGAGAAGTCAAATTTAGGA+GGG | - | chr1_1:74030421-74030440 | Msa0043070:intron | 30.0% | |
| GGTTATATCATACAAAGGTT+GGG | + | chr1_1:74030474-74030493 | None:intergenic | 30.0% | |
| TGGTTATATCATACAAAGGT+TGG | + | chr1_1:74030475-74030494 | None:intergenic | 30.0% | |
| ATCATAGCCTTTATAATTCC+AGG | - | chr1_1:74030610-74030629 | Msa0043070:intron | 30.0% | |
| ! | AAAGCTGAAAGAAGGTTTTT+AGG | - | chr1_1:74030640-74030659 | Msa0043070:intron | 30.0% |
| ! | AAGCTGAAAGAAGGTTTTTA+GGG | - | chr1_1:74030641-74030660 | Msa0043070:intron | 30.0% |
| !!! | TTTTTAGGGCCAATTGTTTT+AGG | - | chr1_1:74030655-74030674 | Msa0043070:CDS | 30.0% |
| ACAAAGAAATTTAATGCTGC+GGG | + | chr1_1:74030733-74030752 | None:intergenic | 30.0% | |
| GACAAAGAAATTTAATGCTG+CGG | + | chr1_1:74030734-74030753 | None:intergenic | 30.0% | |
| TTCTTTGTCAATTATGCTGA+AGG | - | chr1_1:74030745-74030764 | Msa0043070:CDS | 30.0% | |
| ! | TCAATACTTTGAGTTTGTTC+TGG | - | chr1_1:74030795-74030814 | Msa0043070:CDS | 30.0% |
| ! | AAAGAAAGGAAGTACAAAAC+AGG | + | chr1_1:74030866-74030885 | None:intergenic | 30.0% |
| ! | ATTCCTAACAGAGGTATATT+GGG | + | chr1_1:74031059-74031078 | None:intergenic | 30.0% |
| ! | AATTCCTAACAGAGGTATAT+TGG | + | chr1_1:74031060-74031079 | None:intergenic | 30.0% |
| TTTATTCGAATTCCTAACAG+AGG | + | chr1_1:74031068-74031087 | None:intergenic | 30.0% | |
| AATGTTTGTAATCGATCATC+TGG | - | chr1_1:74031141-74031160 | Msa0043070:intron | 30.0% | |
| TATTACTTGATATGAGACGT+GGG | + | chr1_1:74031192-74031211 | None:intergenic | 30.0% | |
| ATATTACTTGATATGAGACG+TGG | + | chr1_1:74031193-74031212 | None:intergenic | 30.0% | |
| !!! | CTTGAAAGTTTTAAAGGACT+TGG | - | chr1_1:74031219-74031238 | Msa0043070:intron | 30.0% |
| TTTATCACTGTTGAACAATG+TGG | - | chr1_1:74031258-74031277 | Msa0043070:intron | 30.0% | |
| ! | CTTTCTTTTCTTCCTAAGTT+TGG | - | chr1_1:74031516-74031535 | Msa0043070:intron | 30.0% |
| CTAAGTCATCTTGTATTTGT+AGG | - | chr1_1:74031551-74031570 | Msa0043070:intron | 30.0% | |
| ACCGATTATACAACTTCTAT+TGG | - | chr1_1:74031575-74031594 | Msa0043070:intron | 30.0% | |
| CCCAATAGAAGTTGTATAAT+CGG | + | chr1_1:74031579-74031598 | None:intergenic | 30.0% | |
| CCGATTATACAACTTCTATT+GGG | - | chr1_1:74031576-74031595 | Msa0043070:intron | 30.0% | |
| !! | GAACTTCTTTTGGTAATATG+TGG | + | chr1_1:74031793-74031812 | None:intergenic | 30.0% |
| ! | TGCTTAAACTGAACTTCTTT+TGG | + | chr1_1:74031803-74031822 | None:intergenic | 30.0% |
| !! | TCGTTAGATACGATTTGGTT+TGG | + | chr1_1:74028745-74028764 | None:intergenic | 35.0% |
| !!! | GGTTTTATTTTCCTGTCCAA+CGG | + | chr1_1:74028775-74028794 | None:intergenic | 35.0% |
| AAGGATATTCATAGGAACAG+TGG | + | chr1_1:74028829-74028848 | None:intergenic | 35.0% | |
| AACTGAGGAAGGATATTCAT+AGG | + | chr1_1:74028837-74028856 | None:intergenic | 35.0% | |
| ATGAATATCCTTCCTCAGTT+CGG | - | chr1_1:74028837-74028856 | Msa0043070:three_prime_UTR | 35.0% | |
| ! | GATTATGAGCTAAATGGGTT+CGG | + | chr1_1:74028869-74028888 | None:intergenic | 35.0% |
| ! | GAACCCATTTAGCTCATAAT+CGG | - | chr1_1:74028868-74028887 | Msa0043070:exon | 35.0% |
| ! | AACCCATTTAGCTCATAATC+GGG | - | chr1_1:74028869-74028888 | Msa0043070:exon | 35.0% |
| TATTACTTCTTCGAGAGAGA+GGG | + | chr1_1:74028920-74028939 | None:intergenic | 35.0% | |
| TTATTACTTCTTCGAGAGAG+AGG | + | chr1_1:74028921-74028940 | None:intergenic | 35.0% | |
| ATTAAGCAGCTTATCCAAAC+AGG | + | chr1_1:74029107-74029126 | None:intergenic | 35.0% | |
| AAGCTGTTCTTGAGAGATTA+TGG | - | chr1_1:74029227-74029246 | Msa0043070:intron | 35.0% | |
| AGAGATTATGGAAATAGGCT+CGG | - | chr1_1:74029239-74029258 | Msa0043070:intron | 35.0% | |
| CTAAGCACTTATGAGACTTT+GGG | + | chr1_1:74029561-74029580 | None:intergenic | 35.0% | |
| TGGTATAGGTGAAGAAACAT+TGG | - | chr1_1:74029713-74029732 | Msa0043070:intron | 35.0% | |
| GTTACCTATTTAAGAGTAGC+TGG | + | chr1_1:74030243-74030262 | None:intergenic | 35.0% | |
| AGGTAACTCACTCTAAATTG+AGG | - | chr1_1:74030256-74030275 | Msa0043070:intron | 35.0% | |
| TGGTAAGGTGAGAAAATCAA+AGG | + | chr1_1:74030390-74030409 | None:intergenic | 35.0% | |
| ATGGGTATACACTACAGTAA+TGG | + | chr1_1:74030495-74030514 | None:intergenic | 35.0% | |
| CGTTAGACCTGGAATTATAA+AGG | + | chr1_1:74030620-74030639 | None:intergenic | 35.0% | |
| ACTGATGAGCCTAAAACAAT+TGG | + | chr1_1:74030667-74030686 | None:intergenic | 35.0% | |
| AACAGGAAGAAGAAATTACC+TGG | + | chr1_1:74030849-74030868 | None:intergenic | 35.0% | |
| ATTCGTAGCTATGGGTAATA+TGG | - | chr1_1:74031029-74031048 | Msa0043070:intron | 35.0% | |
| TATCCCAATATACCTCTGTT+AGG | - | chr1_1:74031053-74031072 | Msa0043070:intron | 35.0% | |
| ! | TTGCAGTATTGCTATTGAGT+TGG | - | chr1_1:74031098-74031117 | Msa0043070:intron | 35.0% |
| TTGTAATCGATCATCTGGAT+TGG | - | chr1_1:74031146-74031165 | Msa0043070:intron | 35.0% | |
| TGTAATCGATCATCTGGATT+GGG | - | chr1_1:74031147-74031166 | Msa0043070:intron | 35.0% | |
| !!! | TATCACGTTCTTTTGGAGTT+TGG | - | chr1_1:74031381-74031400 | Msa0043070:intron | 35.0% |
| AATCTTACGTGCAAATTGCA+AGG | + | chr1_1:74031413-74031432 | None:intergenic | 35.0% | |
| ! | CGTAAGATTTTACCTTGATG+TGG | - | chr1_1:74031424-74031443 | Msa0043070:intron | 35.0% |
| CTTCCTAAGTTTGGTTGTAA+TGG | - | chr1_1:74031525-74031544 | Msa0043070:intron | 35.0% | |
| ATGCCATTACAACCAAACTT+AGG | + | chr1_1:74031531-74031550 | None:intergenic | 35.0% | |
| CCTAGGTAAAGACCTAATAA+TGG | + | chr1_1:74031729-74031748 | None:intergenic | 35.0% | |
| CCATTATTAGGTCTTTACCT+AGG | - | chr1_1:74031726-74031745 | Msa0043070:CDS | 35.0% | |
| TTATTAGGTCTTTACCTAGG+TGG | - | chr1_1:74031729-74031748 | Msa0043070:CDS | 35.0% | |
| AGTTATTCCTAAATTCCACC+AGG | - | chr1_1:74031926-74031945 | Msa0043070:five_prime_UTR | 35.0% | |
| GGTTCTCGTTAGATACGATT+TGG | + | chr1_1:74028750-74028769 | None:intergenic | 40.0% | |
| ! | TTATTTTCCTGTCCAACGGT+TGG | + | chr1_1:74028771-74028790 | None:intergenic | 40.0% |
| AACCAAACATAAACGCCGTA+TGG | - | chr1_1:74028791-74028810 | Msa0043070:three_prime_UTR | 40.0% | |
| ACCAAACATAAACGCCGTAT+GGG | - | chr1_1:74028792-74028811 | Msa0043070:three_prime_UTR | 40.0% | |
| GATATTCATAGGAACAGTGG+CGG | + | chr1_1:74028826-74028845 | None:intergenic | 40.0% | |
| TGAATATCCTTCCTCAGTTC+GGG | - | chr1_1:74028838-74028857 | Msa0043070:three_prime_UTR | 40.0% | |
| GACCCGATTATGAGCTAAAT+GGG | + | chr1_1:74028874-74028893 | None:intergenic | 40.0% | |
| TGACCCGATTATGAGCTAAA+TGG | + | chr1_1:74028875-74028894 | None:intergenic | 40.0% | |
| AACTCGTACTAAGCTGTTGT+TGG | + | chr1_1:74028995-74029014 | None:intergenic | 40.0% | |
| AGTACGAGTTCAACTAGACT+TGG | - | chr1_1:74029005-74029024 | Msa0043070:CDS | 40.0% | |
| CTTACTGGGTCTTTCTTCAA+TGG | + | chr1_1:74029036-74029055 | None:intergenic | 40.0% | |
| TATCCAAACAGGACCTATGA+AGG | + | chr1_1:74029096-74029115 | None:intergenic | 40.0% | |
| ! | TTATGGAAATAGGCTCGGTT+TGG | - | chr1_1:74029244-74029263 | Msa0043070:intron | 40.0% |
| ! | TATGGAAATAGGCTCGGTTT+GGG | - | chr1_1:74029245-74029264 | Msa0043070:intron | 40.0% |
| GCTAAGCACTTATGAGACTT+TGG | + | chr1_1:74029562-74029581 | None:intergenic | 40.0% | |
| TCAGGAAGAAGCTCTTTATC+AGG | + | chr1_1:74029789-74029808 | None:intergenic | 40.0% | |
| TTCTTTGTCGAAGCTCTTCA+AGG | + | chr1_1:74029839-74029858 | None:intergenic | 40.0% | |
| !! | ATATCAGTTCTAGGAGTTGG+AGG | - | chr1_1:74029864-74029883 | Msa0043070:CDS | 40.0% |
| GTGGTGAAGAAAAATTCACC+AGG | + | chr1_1:74029984-74030003 | None:intergenic | 40.0% | |
| CATTCACAACTCACTAGGTA+GGG | + | chr1_1:74030060-74030079 | None:intergenic | 40.0% | |
| ACATTCACAACTCACTAGGT+AGG | + | chr1_1:74030061-74030080 | None:intergenic | 40.0% | |
| !! | GTTTAAAGGTGCTATACCGT+TGG | - | chr1_1:74030115-74030134 | Msa0043070:intron | 40.0% |
| ! | AAACTCTGTCAAGTTGCCAA+CGG | + | chr1_1:74030134-74030153 | None:intergenic | 40.0% |
| ! | CAACTTGACAGAGTTTTCCA+GGG | - | chr1_1:74030138-74030157 | Msa0043070:intron | 40.0% |
| AAGACTTTGATCTTTCACCC+TGG | + | chr1_1:74030158-74030177 | None:intergenic | 40.0% | |
| CGATCCAGCTACTCTTAAAT+AGG | - | chr1_1:74030236-74030255 | Msa0043070:intron | 40.0% | |
| CTAATATTGTTGTGGTCTCG+TGG | - | chr1_1:74030531-74030550 | Msa0043070:intron | 40.0% | |
| GTCTAACGAAAGCTGAAAGA+AGG | - | chr1_1:74030632-74030651 | Msa0043070:intron | 40.0% | |
| ! | TCATCAGTTCTTTTCTACGC+CGG | - | chr1_1:74030679-74030698 | Msa0043070:CDS | 40.0% |
| CAAGTAGGAGAAGGTTATTC+CGG | + | chr1_1:74030701-74030720 | None:intergenic | 40.0% | |
| ! | CTGGTTCTTATGTTCAGTAC+AGG | - | chr1_1:74030814-74030833 | Msa0043070:CDS | 40.0% |
| !! | TTTTTAAGCATGCCTGCATC+AGG | - | chr1_1:74031003-74031022 | Msa0043070:intron | 40.0% |
| ATCAGGTCAATTCGTAGCTA+TGG | - | chr1_1:74031020-74031039 | Msa0043070:intron | 40.0% | |
| TCAGGTCAATTCGTAGCTAT+GGG | - | chr1_1:74031021-74031040 | Msa0043070:intron | 40.0% | |
| ! | GAGTGCTTATCACGTTCTTT+TGG | - | chr1_1:74031374-74031393 | Msa0043070:intron | 40.0% |
| TTACCTTGATGTGGTTCTTG+AGG | - | chr1_1:74031433-74031452 | Msa0043070:intron | 40.0% | |
| TTTCCTCAAGAACCACATCA+AGG | + | chr1_1:74031439-74031458 | None:intergenic | 40.0% | |
| CAACTTCTATTGGGACAACT+TGG | - | chr1_1:74031585-74031604 | Msa0043070:intron | 40.0% | |
| TCTATTGGGACAACTTGGAT+TGG | - | chr1_1:74031590-74031609 | Msa0043070:intron | 40.0% | |
| CTTCTAGCAGCACCATTATT+AGG | - | chr1_1:74031714-74031733 | Msa0043070:CDS | 40.0% | |
| ATACAGGAAGAGTAATGCTC+TGG | + | chr1_1:74031876-74031895 | None:intergenic | 40.0% | |
| TGCAAAAATATGAGGCGACG+AGG | - | chr1_1:74028698-74028717 | Msa0043070:three_prime_UTR | 45.0% | |
| ATCTAACGAGAACCAACCGT+TGG | - | chr1_1:74028756-74028775 | Msa0043070:three_prime_UTR | 45.0% | |
| TCCCATACGGCGTTTATGTT+TGG | + | chr1_1:74028796-74028815 | None:intergenic | 45.0% | |
| ACATAAACGCCGTATGGGAT+TGG | - | chr1_1:74028797-74028816 | Msa0043070:three_prime_UTR | 45.0% | |
| CATAAACGCCGTATGGGATT+GGG | - | chr1_1:74028798-74028817 | Msa0043070:three_prime_UTR | 45.0% | |
| AATCGGGTCAACAACTCTTC+CGG | - | chr1_1:74028885-74028904 | Msa0043070:CDS | 45.0% | |
| ACTGGGTCTTTCTTCAATGG+CGG | + | chr1_1:74029033-74029052 | None:intergenic | 45.0% | |
| TTGCCTTCATAGGTCCTGTT+TGG | - | chr1_1:74029090-74029109 | Msa0043070:intron | 45.0% | |
| !!! | AGGAGTTGGAGGAAGCATTT+TGG | - | chr1_1:74029875-74029894 | Msa0043070:CDS | 45.0% |
| !!! | GGAGTTGGAGGAAGCATTTT+GGG | - | chr1_1:74029876-74029895 | Msa0043070:CDS | 45.0% |
| TGAAGCTCCTGTTCAATCAG+AGG | - | chr1_1:74029935-74029954 | Msa0043070:CDS | 45.0% | |
| GAAGCTCCTGTTCAATCAGA+GGG | - | chr1_1:74029936-74029955 | Msa0043070:CDS | 45.0% | |
| AGATTTCTTCAGCTAGCTCC+TGG | - | chr1_1:74029963-74029982 | Msa0043070:CDS | 45.0% | |
| GAAGGAAGCAAAAAACACCC+CGG | + | chr1_1:74030038-74030057 | None:intergenic | 45.0% | |
| CTTCACATGAAATGCATGCC+AGG | + | chr1_1:74030096-74030115 | None:intergenic | 45.0% | |
| ! | GCAACTTGACAGAGTTTTCC+AGG | - | chr1_1:74030137-74030156 | Msa0043070:intron | 45.0% |
| ! | GTGCAGGTTTCTGGATATTG+TGG | - | chr1_1:74030553-74030572 | Msa0043070:intron | 45.0% |
| TGGATATTGTGGCCTTCTCT+TGG | - | chr1_1:74030564-74030583 | Msa0043070:intron | 45.0% | |
| GGATATTGTGGCCTTCTCTT+GGG | - | chr1_1:74030565-74030584 | Msa0043070:intron | 45.0% | |
| TGATAGGACTTCCCAAGAGA+AGG | + | chr1_1:74030579-74030598 | None:intergenic | 45.0% | |
| CTTTCAGCTTTCGTTAGACC+TGG | + | chr1_1:74030631-74030650 | None:intergenic | 45.0% | |
| CGGAATAACCTTCTCCTACT+TGG | - | chr1_1:74030699-74030718 | Msa0043070:CDS | 45.0% | |
| AACCTTCTCCTACTTGGTTC+TGG | - | chr1_1:74030705-74030724 | Msa0043070:CDS | 45.0% | |
| TACCAGAACCAAGTAGGAGA+AGG | + | chr1_1:74030710-74030729 | None:intergenic | 45.0% | |
| !! | AAGGTGCTGTTGAATCACTG+TGG | - | chr1_1:74030764-74030783 | Msa0043070:CDS | 45.0% |
| !! | ATCAATCGGTGTCAGCTAGA+AGG | + | chr1_1:74030910-74030929 | None:intergenic | 45.0% |
| GTCGTGTGGCAAGTATCAAT+CGG | + | chr1_1:74030924-74030943 | None:intergenic | 45.0% | |
| ATTGGGACACGGGTATAACA+GGG | - | chr1_1:74031164-74031183 | Msa0043070:intron | 45.0% | |
| CCTTAAAAGCCAGCTCTCAA+GGG | + | chr1_1:74031335-74031354 | None:intergenic | 45.0% | |
| !!! | CCTTGAGAGCTGGCTTTTAA+GGG | - | chr1_1:74031333-74031352 | Msa0043070:intron | 45.0% |
| !! | GGACAACTTGGATTGGTTAC+TGG | - | chr1_1:74031597-74031616 | Msa0043070:intron | 45.0% |
| !! | TTGGATTGGTTACTGGAGAC+CGG | - | chr1_1:74031604-74031623 | Msa0043070:CDS | 45.0% |
| ACCTCCAAACTGATAGCATC+CGG | + | chr1_1:74031626-74031645 | None:intergenic | 45.0% | |
| ! | GTTTGGAGGTACGTAGTAGT+CGG | - | chr1_1:74031636-74031655 | Msa0043070:CDS | 45.0% |
| AACTTGAGTGAGAGGATCTG+TGG | + | chr1_1:74031694-74031713 | None:intergenic | 45.0% | |
| GCTAGAAGAACTTGAGTGAG+AGG | + | chr1_1:74031702-74031721 | None:intergenic | 45.0% | |
| ! | CATGGATGGTCAAACTTGCT+GGG | - | chr1_1:74031754-74031773 | Msa0043070:CDS | 45.0% |
| AGGAAGAGTAATGCTCTGGT+AGG | + | chr1_1:74031872-74031891 | None:intergenic | 45.0% | |
| ATCGGGTCAACAACTCTTCC+GGG | - | chr1_1:74028886-74028905 | Msa0043070:CDS | 50.0% | |
| CTGACACCCTCTGATTGAAC+AGG | + | chr1_1:74029945-74029964 | None:intergenic | 50.0% | |
| CACAACTCACTAGGTAGGGA+AGG | + | chr1_1:74030056-74030075 | None:intergenic | 50.0% | |
| CAGTACAGGCTTGTCTTTCC+AGG | - | chr1_1:74030828-74030847 | Msa0043070:CDS | 50.0% | |
| TCATTGGGTCAATGGTCGTG+TGG | + | chr1_1:74030938-74030957 | None:intergenic | 50.0% | |
| GCTACGAATTGACCTGATGC+AGG | + | chr1_1:74031018-74031037 | None:intergenic | 50.0% | |
| ! | CGATCATCTGGATTGGGACA+CGG | - | chr1_1:74031153-74031172 | Msa0043070:intron | 50.0% |
| ! | GATCATCTGGATTGGGACAC+GGG | - | chr1_1:74031154-74031173 | Msa0043070:intron | 50.0% |
| GATTGGGACACGGGTATAAC+AGG | - | chr1_1:74031163-74031182 | Msa0043070:intron | 50.0% | |
| !!! | CCCTTGAGAGCTGGCTTTTA+AGG | - | chr1_1:74031332-74031351 | Msa0043070:intron | 50.0% |
| CCCTTAAAAGCCAGCTCTCA+AGG | + | chr1_1:74031336-74031355 | None:intergenic | 50.0% | |
| GAGACCGGATGCTATCAGTT+TGG | - | chr1_1:74031619-74031638 | Msa0043070:CDS | 50.0% | |
| ACCGGATGCTATCAGTTTGG+AGG | - | chr1_1:74031622-74031641 | Msa0043070:CDS | 50.0% | |
| TGAGTGAGAGGATCTGTGGA+TGG | + | chr1_1:74031690-74031709 | None:intergenic | 50.0% | |
| GTCTTTACCTAGGTGGTGCA+TGG | - | chr1_1:74031736-74031755 | Msa0043070:CDS | 50.0% | |
| TTACCTAGGTGGTGCATGGA+TGG | - | chr1_1:74031740-74031759 | Msa0043070:CDS | 50.0% | |
| GCATGGATGGTCAAACTTGC+TGG | - | chr1_1:74031753-74031772 | Msa0043070:CDS | 50.0% | |
| TCCTAAATTCCACCAGGCCT+TGG | - | chr1_1:74031932-74031951 | Msa0043070:five_prime_UTR | 50.0% | |
| ACGAGAACCAACCGTTGGAC+AGG | - | chr1_1:74028761-74028780 | Msa0043070:three_prime_UTR | 55.0% | |
| TGGCGGTTCCCAATCCCATA+CGG | + | chr1_1:74028809-74028828 | None:intergenic | 55.0% | |
| AGAGAGAGGGAAGCTGAACC+CGG | + | chr1_1:74028907-74028926 | None:intergenic | 55.0% | |
| TTGTTGTGGTCTCGTGGTGC+AGG | - | chr1_1:74030537-74030556 | Msa0043070:intron | 55.0% | |
| TGCGGGTACCAGAACCAAGT+AGG | + | chr1_1:74030716-74030735 | None:intergenic | 55.0% | |
| GGTTCTTCTCCCTTGAGAGC+TGG | - | chr1_1:74031323-74031342 | Msa0043070:intron | 55.0% | |
| CGTAGTAGTCGGAGCAGTAG+TGG | - | chr1_1:74031647-74031666 | Msa0043070:CDS | 55.0% | |
| TGACCATCCATGCACCACCT+AGG | + | chr1_1:74031746-74031765 | None:intergenic | 55.0% | |
| GCCAAGGCCTGGTGGAATTT+AGG | + | chr1_1:74031936-74031955 | None:intergenic | 55.0% | |
| GGAGCAACCCGAACTGAGGA+AGG | + | chr1_1:74028848-74028867 | None:intergenic | 60.0% | |
| GTTCGGAGCAACCCGAACTG+AGG | + | chr1_1:74028852-74028871 | None:intergenic | 60.0% | |
| GGTCTCGTGGTGCAGGTTTC+TGG | - | chr1_1:74030544-74030563 | Msa0043070:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 74028693 | 74031961 | 74028693 | ID=Msa0043070;Name=Msa0043070 |
| chr1_1 | mRNA | 74028693 | 74031961 | 74028693 | ID=Msa0043070-mRNA-1;Parent=Msa0043070;Name=Msa0043070-mRNA-1;_AED=0.01;_eAED=0.01;_QI=117|0.66|0.75|1|1|1|4|179|349 |
| chr1_1 | exon | 74028693 | 74029081 | 74028693 | ID=Msa0043070-mRNA-1:exon:24904;Parent=Msa0043070-mRNA-1 |
| chr1_1 | exon | 74029805 | 74030095 | 74029805 | ID=Msa0043070-mRNA-1:exon:24903;Parent=Msa0043070-mRNA-1 |
| chr1_1 | exon | 74030644 | 74030951 | 74030644 | ID=Msa0043070-mRNA-1:exon:24902;Parent=Msa0043070-mRNA-1 |
| chr1_1 | exon | 74031604 | 74031961 | 74031604 | ID=Msa0043070-mRNA-1:exon:24901;Parent=Msa0043070-mRNA-1 |
| chr1_1 | five_prime_UTR | 74031845 | 74031961 | 74031845 | ID=Msa0043070-mRNA-1:five_prime_utr;Parent=Msa0043070-mRNA-1 |
| chr1_1 | CDS | 74031604 | 74031844 | 74031604 | ID=Msa0043070-mRNA-1:cds;Parent=Msa0043070-mRNA-1 |
| chr1_1 | CDS | 74030644 | 74030951 | 74030644 | ID=Msa0043070-mRNA-1:cds;Parent=Msa0043070-mRNA-1 |
| chr1_1 | CDS | 74029805 | 74030095 | 74029805 | ID=Msa0043070-mRNA-1:cds;Parent=Msa0043070-mRNA-1 |
| chr1_1 | CDS | 74028872 | 74029081 | 74028872 | ID=Msa0043070-mRNA-1:cds;Parent=Msa0043070-mRNA-1 |
| chr1_1 | three_prime_UTR | 74028693 | 74028871 | 74028693 | ID=Msa0043070-mRNA-1:three_prime_utr;Parent=Msa0043070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
