AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1369390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1369390 MtrunA17_Chr8g0334531 95.525 514 20 2 1 513 1 512 0.0 927
Msa1369390 MtrunA17_Chr7g0245041 72.505 491 117 5 28 513 14 491 0.0 680
Msa1369390 MtrunA17_Chr5g0422461 41.546 414 195 9 105 510 107 481 5.40e-96 302
Msa1369390 MtrunA17_Chr7g0245081 77.660 94 21 0 407 500 2 95 7.36e-38 136
Msa1369390 MtrunA17_Chr7g0245091 87.234 47 6 0 306 352 1 47 6.55e-22 89.7
Msa1369390 MtrunA17_Chr4g0038501 26.238 202 94 6 152 350 20 169 9.14e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1369390 AT5G01920.1 69.625 507 136 9 12 512 1 495 0.0 657
Msa1369390 AT5G01920.2 69.625 507 136 9 12 512 1 495 0.0 657
Msa1369390 AT1G68830.1 41.235 405 193 11 114 510 101 468 3.03e-86 276
Msa1369390 AT3G07980.1 26.238 202 94 5 152 350 20 169 4.61e-11 66.2
Msa1369390 AT3G07980.2 26.238 202 94 5 152 350 20 169 4.92e-11 66.2

Find 129 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGGACTTGGTGTTTCTTC+TGG 0.130923 tig0018782:-43315 None:intergenic
CAGATTAAACTCATTGATTT+TGG 0.180146 tig0018782:+43201 Msa1369390:CDS
CAGATTCACTATCAAGAATT+TGG 0.194374 tig0018782:-43648 None:intergenic
CAGATAAACGTCCTCTTCTT+AGG 0.202236 tig0018782:-43717 None:intergenic
TCATTTGGTGTTGTTTATTC+TGG 0.207852 tig0018782:+41913 Msa1369390:CDS
AATAACTTTATCCTTAGTTT+TGG 0.242510 tig0018782:-42010 None:intergenic
ATTCAAGGGGCTGAAGAATT+TGG 0.244608 tig0018782:+42631 Msa1369390:CDS
GCAAGACCAGGTGTTCTTAT+TGG 0.255792 tig0018782:+41778 Msa1369390:CDS
CAAGAGCACTTGGTGGTTAT+AGG 0.257964 tig0018782:+43977 Msa1369390:three_prime_UTR
TCTGGGAGTACATAGAGTTC+TGG 0.259567 tig0018782:-43297 None:intergenic
AGGAAGTCAGCACATGTTTC+AGG 0.264333 tig0018782:-42697 None:intergenic
CGTTCCTGACCGCACCCTTT+TGG 0.280827 tig0018782:+43257 Msa1369390:CDS
GAGGACTTGGTGTTTCTTCT+GGG 0.290835 tig0018782:-43314 None:intergenic
TGATCTGTTTGATACTTATT+CGG 0.294442 tig0018782:+43489 Msa1369390:CDS
TTGAGGAATGGTTCAATTAC+CGG 0.308751 tig0018782:+42659 Msa1369390:CDS
AACTTAGAATCTGTCATGTT+TGG 0.314194 tig0018782:+43024 Msa1369390:CDS
AAGGTGGAAAATGGCTTGTT+TGG 0.317886 tig0018782:+42761 Msa1369390:CDS
TCTTAAGAGAAGTAATTATC+TGG 0.321848 tig0018782:-43110 None:intergenic
TGTTGTTTATTCTGGTGTTT+TGG 0.331655 tig0018782:+41921 Msa1369390:CDS
AGTTCACAAAAGGTGGAAAA+TGG 0.341601 tig0018782:+42752 Msa1369390:CDS
GGATAAAGTTATTCTCAAAA+AGG 0.346106 tig0018782:+42020 Msa1369390:CDS
CAACTTAGTGGTCACCAAAC+AGG 0.353532 tig0018782:+43176 Msa1369390:CDS
CAAATTCTTGATAGTGAATC+TGG 0.355583 tig0018782:+43649 Msa1369390:CDS
TCACCTCCTAGAAGAAAATA+AGG 0.357841 tig0018782:-43760 None:intergenic
AAGAGCACTTGGTGGTTATA+GGG 0.367179 tig0018782:+43978 Msa1369390:three_prime_UTR
GGGTTCCAACCTTGTTGCCT+TGG 0.384780 tig0018782:-41989 None:intergenic
CTTAAGAAAATTCATGATAC+AGG 0.385572 tig0018782:+43126 Msa1369390:CDS
CTGGGAGTACATAGAGTTCT+GGG 0.385893 tig0018782:-43296 None:intergenic
GTTGCGCTCTTTCATGTAAT+CGG 0.387894 tig0018782:-42992 None:intergenic
CAAAGCAGCAGGAGACCTTA+AGG 0.395863 tig0018782:-43545 None:intergenic
CTGTTTGATACTTATTCGGC+TGG 0.396996 tig0018782:+43493 Msa1369390:CDS
CAGGTTAAGGTTGGAATTCA+AGG 0.397973 tig0018782:+42616 Msa1369390:intron
ATTCCTTCTTTGCTTCGATC+AGG 0.411992 tig0018782:+41673 Msa1369390:CDS
TGAAGAATTTGGTGAATTTG+AGG 0.416266 tig0018782:+42642 Msa1369390:CDS
TAATTTCACCAATGGTTTGT+TGG 0.417180 tig0018782:+41633 Msa1369390:CDS
TTTCTTGTTGGAGATAAAAT+CGG 0.418502 tig0018782:+41883 Msa1369390:CDS
GGTGAAAAGAACGCAGCAAT+TGG 0.430107 tig0018782:-43345 None:intergenic
AAAATCGGTGAAGGGTCATT+TGG 0.434082 tig0018782:+41898 Msa1369390:CDS
TTAAAATTCTTCAAAGCAGC+AGG 0.436042 tig0018782:-43556 None:intergenic
TGCATTACACTTTGTAGTGT+TGG 0.436136 tig0018782:-41599 None:intergenic
AGATAAACGTCCTCTTCTTA+GGG 0.438198 tig0018782:-43716 None:intergenic
CAAGTTGAAGAGGAGCAAAA+AGG 0.442438 tig0018782:-41816 None:intergenic
AAATGGCAATACCAACCTTA+AGG 0.442773 tig0018782:+43530 Msa1369390:CDS
AAACATAGTAACATCATCAT+AGG 0.443413 tig0018782:-41385 None:intergenic
ATCTGGTAGAGGCTGGGACT+TGG 0.446958 tig0018782:+43666 Msa1369390:CDS
CTATCAAGAATTTGGAGGTC+GGG 0.446971 tig0018782:-43640 None:intergenic
AATGGTTTGTTGGATGTTGG+TGG 0.459164 tig0018782:+41643 Msa1369390:CDS
GAATAAGTATCAAACAGATC+AGG 0.461033 tig0018782:-43487 None:intergenic
ACCAATGGTTTGTTGGATGT+TGG 0.465781 tig0018782:+41640 Msa1369390:CDS
AAATAAACCTGCCATAAGAT+TGG 0.467031 tig0018782:-43366 None:intergenic
ATGGTTTGTTGGATGTTGGT+GGG 0.467597 tig0018782:+41644 Msa1369390:CDS
TTGGTGCAGCAACAGACCTT+CGG 0.468641 tig0018782:+43220 Msa1369390:CDS
TTGAATATGCAGGTTAAGGT+TGG 0.469673 tig0018782:+42607 Msa1369390:intron
GAAACATGTGCTGACTTCCT+TGG 0.472511 tig0018782:+42700 Msa1369390:CDS
AATTATCAGACATGCAAAGA+TGG 0.476231 tig0018782:+41713 Msa1369390:CDS
ATTGGCGCTGGTGGAGGACT+TGG 0.476970 tig0018782:-43327 None:intergenic
TATAAAGCCAGCCAACTTAG+TGG 0.477446 tig0018782:+43164 Msa1369390:CDS
GCAGCAATTGGCGCTGGTGG+AGG 0.482408 tig0018782:-43333 None:intergenic
TTGGTGACCACTAAGTTGGC+TGG 0.491398 tig0018782:-43171 None:intergenic
GAGTTTAATCTGTCCCTGTT+TGG 0.495629 tig0018782:-43190 None:intergenic
ATGACAGATTCTAAGTTTGA+AGG 0.504582 tig0018782:-43018 None:intergenic
TGGGATTGTACTACTTCAAA+TGG 0.504661 tig0018782:+43513 Msa1369390:CDS
AACGCAGCAATTGGCGCTGG+TGG 0.504872 tig0018782:-43336 None:intergenic
TTTGATAATAATTTCACCAA+TGG 0.508196 tig0018782:+41625 Msa1369390:CDS
GGCAATAGTCGGGATCCAAA+AGG 0.508880 tig0018782:-43272 None:intergenic
ATCTCCAACAAGAAAATCAC+CGG 0.512048 tig0018782:-41875 None:intergenic
GGATCCAAAAGGGTGCGGTC+AGG 0.512727 tig0018782:-43261 None:intergenic
ACAAACTCACAGTTCACAAA+AGG 0.512881 tig0018782:+42742 Msa1369390:CDS
ATAGTGAATCTGGTAGAGGC+TGG 0.515673 tig0018782:+43659 Msa1369390:CDS
ATAGTTGTAACAGTTGGAGT+TGG 0.517434 tig0018782:-41481 None:intergenic
TGGTTTGTTGGATGTTGGTG+GGG 0.524731 tig0018782:+41645 Msa1369390:CDS
TGACAGATTCTAAGTTTGAA+GGG 0.525444 tig0018782:-43017 None:intergenic
ATGGCTTGTTTGGAAATTTG+AGG 0.527072 tig0018782:+42771 Msa1369390:CDS
CTTGATAGTGAATCTGGTAG+AGG 0.528425 tig0018782:+43655 Msa1369390:CDS
GCAATAGTCGGGATCCAAAA+GGG 0.536861 tig0018782:-43271 None:intergenic
AAGGTTGGAACCCAAAACTA+AGG 0.537050 tig0018782:+41999 Msa1369390:CDS
AACTCACAGTTCACAAAAGG+TGG 0.542299 tig0018782:+42745 Msa1369390:CDS
GGAGGGAGTATACTCGCCTC+AGG 0.542612 tig0018782:+43617 Msa1369390:CDS
AAAATCCAAGGCAACAAGGT+TGG 0.543197 tig0018782:+41984 Msa1369390:CDS
TATCAGCCACAAAACTTCCA+AGG 0.543904 tig0018782:-42717 None:intergenic
ACAAAGCTTATATCTGAAAG+AGG 0.543985 tig0018782:+43691 Msa1369390:CDS
AGTCCTGATCGAAGCAAAGA+AGG 0.545231 tig0018782:-41676 None:intergenic
CAAACACTAGCAAGAGCACT+TGG 0.545666 tig0018782:+43967 Msa1369390:three_prime_UTR
TTAAGTATAGTTGTAACAGT+TGG 0.548626 tig0018782:-41487 None:intergenic
ATTATCAGACATGCAAAGAT+GGG 0.550083 tig0018782:+41714 Msa1369390:CDS
GATGTTGAGGTGGACAAGAG+AGG 0.551839 tig0018782:+41961 Msa1369390:CDS
GGAAGGAGAAATTTGAAGAC+CGG 0.552012 tig0018782:+41856 Msa1369390:CDS
CTGTTTGGTGACCACTAAGT+TGG 0.553834 tig0018782:-43175 None:intergenic
ATTCACTATCAAGAATTTGG+AGG 0.555926 tig0018782:-43645 None:intergenic
AGGTTAAGGTTGGAATTCAA+GGG 0.556860 tig0018782:+42617 Msa1369390:intron
ACCAACATCCAACAAACCAT+TGG 0.568449 tig0018782:-41641 None:intergenic
TTAGCAAAACCAAGTTGAAG+AGG 0.569301 tig0018782:-41826 None:intergenic
CGTAATTCTTTCCGATCCGA+AGG 0.571846 tig0018782:-43236 None:intergenic
CAGGTGCTGCTCTAGATAGC+CGG 0.573871 tig0018782:-42678 None:intergenic
AATTTGGTGAATTTGAGGAA+TGG 0.573912 tig0018782:+42647 Msa1369390:CDS
AACTTAGTGGTCACCAAACA+GGG 0.574734 tig0018782:+43177 Msa1369390:CDS
ATATACTGACATTATCATGC+TGG 0.575534 tig0018782:-43829 None:intergenic
ATGTTTGGACGTGTGTTGCA+AGG 0.579309 tig0018782:+43039 Msa1369390:CDS
TGTTTGATACTTATTCGGCT+GGG 0.581574 tig0018782:+43494 Msa1369390:CDS
GAATTTGGAGGTCGGGCCTG+AGG 0.582291 tig0018782:-43633 None:intergenic
TGGGAGTACATAGAGTTCTG+GGG 0.582528 tig0018782:-43295 None:intergenic
AATAAGTATCAAACAGATCA+GGG 0.584272 tig0018782:-43486 None:intergenic
GTTGGAGATAAAATCGGTGA+AGG 0.586301 tig0018782:+41889 Msa1369390:CDS
AAAACAAGAACATTGAAGAA+GGG 0.592346 tig0018782:-44045 None:intergenic
TAGTGAATCTGGTAGAGGCT+GGG 0.593926 tig0018782:+43660 Msa1369390:CDS
ATAGGAAGACGTGGCAAGAG+AGG 0.594683 tig0018782:+41360 Msa1369390:five_prime_UTR
AAGAACGCAGCAATTGGCGC+TGG 0.598908 tig0018782:-43339 None:intergenic
GGGAGTACATAGAGTTCTGG+GGG 0.603048 tig0018782:-43294 None:intergenic
GCAGCAGGAGACCTTAAGGT+TGG 0.603473 tig0018782:-43541 None:intergenic
ACTATCAAGAATTTGGAGGT+CGG 0.607440 tig0018782:-43641 None:intergenic
AAAGAATGTGGTGGATGTTG+AGG 0.609920 tig0018782:+41948 Msa1369390:CDS
ACACTAGCAAGAGCACTTGG+TGG 0.620300 tig0018782:+43970 Msa1369390:three_prime_UTR
GAAAGAGGTCCCCTAAGAAG+AGG 0.622015 tig0018782:+43706 Msa1369390:CDS
TTGTAGTGTTGGTATTGACA+CGG 0.625771 tig0018782:-41588 None:intergenic
ATGGCACCAATAAGAACACC+TGG 0.630764 tig0018782:-41784 None:intergenic
GGTTAAGGTTGGAATTCAAG+GGG 0.633298 tig0018782:+42618 Msa1369390:intron
AGTCGGGATCCAAAAGGGTG+CGG 0.634552 tig0018782:-43266 None:intergenic
CAGAATGAAATGATGAGAGA+AGG 0.635481 tig0018782:-44010 None:intergenic
ATCGAAGCAAAGAAGGAATG+TGG 0.635614 tig0018782:-41669 None:intergenic
GAGGAAAATCCAAGGCAACA+AGG 0.637928 tig0018782:+41980 Msa1369390:CDS
TTGGAGATAAAATCGGTGAA+GGG 0.644807 tig0018782:+41890 Msa1369390:CDS
GAATGTGGTGGATGTTGAGG+TGG 0.645659 tig0018782:+41951 Msa1369390:CDS
GGACAAGAGAGGAAAATCCA+AGG 0.649587 tig0018782:+41972 Msa1369390:CDS
TTTGGTCTCAAAGAATGTGG+TGG 0.650196 tig0018782:+41939 Msa1369390:CDS
ATATACTTAACTGCAAGACC+AGG 0.651960 tig0018782:+41766 Msa1369390:CDS
GCAGCAACAGACCTTCGGAT+CGG 0.658142 tig0018782:+43225 Msa1369390:CDS
TAAAGTAAAATAGGAAGACG+TGG 0.687992 tig0018782:+41351 None:intergenic
GATAAACGTCCTCTTCTTAG+GGG 0.689705 tig0018782:-43715 None:intergenic
GGAGTACATAGAGTTCTGGG+GGG 0.810828 tig0018782:-43293 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATTGAATTTTAGTATA+AGG + tig0018782:42080-42099 Msa1369390:intron 10.0%
!! AAAAATAAATGAATTAGAAA+AGG - tig0018782:43858-43877 None:intergenic 10.0%
!! TATCATAACAAAAACAATAA+TGG + tig0018782:41444-41463 Msa1369390:CDS 15.0%
!! TTTATTTAGACAAGAAATAA+GGG - tig0018782:42064-42083 None:intergenic 15.0%
!!! TTTTATTTAGACAAGAAATA+AGG - tig0018782:42065-42084 None:intergenic 15.0%
!! TATGATTACATTCAATTATT+TGG + tig0018782:42214-42233 Msa1369390:intron 15.0%
!!! AATTCTGTTTTTAATGATTA+AGG + tig0018782:42547-42566 Msa1369390:intron 15.0%
!!! GAAACATTTGTATGTTTTAA+GGG - tig0018782:41544-41563 None:intergenic 20.0%
!!! AGAAACATTTGTATGTTTTA+AGG - tig0018782:41545-41564 None:intergenic 20.0%
!!! TTTGATAATAATTTCACCAA+TGG + tig0018782:41625-41644 Msa1369390:CDS 20.0%
!!! ATAACTTTATCCTTAGTTTT+GGG - tig0018782:42012-42031 None:intergenic 20.0%
!!! AATAACTTTATCCTTAGTTT+TGG - tig0018782:42013-42032 None:intergenic 20.0%
!! TTATTTAGACAAGAAATAAG+GGG - tig0018782:42063-42082 None:intergenic 20.0%
!!! ATTGAATTTTAGTATAAGGT+AGG + tig0018782:42084-42103 Msa1369390:intron 20.0%
!!! ATATTTTCACGACATAATTA+GGG - tig0018782:43399-43418 None:intergenic 20.0%
!! GATTATTTCATATATTGCAT+TGG + tig0018782:43419-43438 Msa1369390:intron 20.0%
!!! TGCTTTGAAGAATTTTAATT+TGG + tig0018782:43561-43580 Msa1369390:CDS 20.0%
!! ATATGATTTGAAAAAATGGA+GGG + tig0018782:43600-43619 Msa1369390:CDS 20.0%
!!! TTTTTCAGAATTATTGTTGA+AGG + tig0018782:43874-43893 Msa1369390:intron 20.0%
!! GTGAAAAATATAAATCTACA+TGG - tig0018782:43934-43953 None:intergenic 20.0%
! AAACATAGTAACATCATCAT+AGG - tig0018782:41388-41407 None:intergenic 25.0%
! TTAAGTATAGTTGTAACAGT+TGG - tig0018782:41490-41509 None:intergenic 25.0%
! TTTCTTGTTGGAGATAAAAT+CGG + tig0018782:41883-41902 Msa1369390:CDS 25.0%
! GGATAAAGTTATTCTCAAAA+AGG + tig0018782:42020-42039 Msa1369390:CDS 25.0%
! CCTTTACATTCAATTATTAC+CGG + tig0018782:42250-42269 Msa1369390:intron 25.0%
!!! TTAAATTTTAACCATCCATG+CGG + tig0018782:42445-42464 Msa1369390:intron 25.0%
! ATAAAACTTTAGACATGTCT+AGG - tig0018782:42849-42868 None:intergenic 25.0%
! TTATTGCTTGTACTTCATTT+AGG + tig0018782:42865-42884 Msa1369390:intron 25.0%
! CTTAATTTATCATCTGAATC+TGG + tig0018782:42904-42923 Msa1369390:intron 25.0%
! ATTCCTTAACATACACTAAT+TGG + tig0018782:42934-42953 Msa1369390:intron 25.0%
! TCTTAAGAGAAGTAATTATC+TGG - tig0018782:43113-43132 None:intergenic 25.0%
! CTTAAGAAAATTCATGATAC+AGG + tig0018782:43126-43145 Msa1369390:CDS 25.0%
!!! CAGATTAAACTCATTGATTT+TGG + tig0018782:43201-43220 Msa1369390:CDS 25.0%
!! CATATTTTCACGACATAATT+AGG - tig0018782:43400-43419 None:intergenic 25.0%
! AATAAGTATCAAACAGATCA+GGG - tig0018782:43489-43508 None:intergenic 25.0%
! TGATCTGTTTGATACTTATT+CGG + tig0018782:43489-43508 Msa1369390:CDS 25.0%
! AATTTGGAAATAAAAACCTG+TGG + tig0018782:43577-43596 Msa1369390:CDS 25.0%
!!! TTTTTTCAAATCATATCCAC+AGG - tig0018782:43596-43615 None:intergenic 25.0%
! GTGGATATGATTTGAAAAAA+TGG + tig0018782:43596-43615 Msa1369390:CDS 25.0%
! GATATGATTTGAAAAAATGG+AGG + tig0018782:43599-43618 Msa1369390:CDS 25.0%
!! GGAATTTTATATCTCAAAGA+AGG + tig0018782:43895-43914 Msa1369390:intron 25.0%
! AAAATATAAATCTACATGGC+AGG - tig0018782:43930-43949 None:intergenic 25.0%
! AAAACAAGAACATTGAAGAA+GGG - tig0018782:44048-44067 None:intergenic 25.0%
! AAAAACAAGAACATTGAAGA+AGG - tig0018782:44049-44068 None:intergenic 25.0%
! TAATTTCACCAATGGTTTGT+TGG + tig0018782:41633-41652 Msa1369390:CDS 30.0%
AATTATCAGACATGCAAAGA+TGG + tig0018782:41713-41732 Msa1369390:CDS 30.0%
ATTATCAGACATGCAAAGAT+GGG + tig0018782:41714-41733 Msa1369390:CDS 30.0%
!!! CTTGGTTTTGCTAATTTATC+TGG + tig0018782:41835-41854 Msa1369390:CDS 30.0%
! GTTTTGCTAATTTATCTGGA+AGG + tig0018782:41839-41858 Msa1369390:CDS 30.0%
!! TCATTTGGTGTTGTTTATTC+TGG + tig0018782:41913-41932 Msa1369390:CDS 30.0%
!! TGTTGTTTATTCTGGTGTTT+TGG + tig0018782:41921-41940 Msa1369390:CDS 30.0%
ATGCTTAAAACAACCAAAAC+AGG + tig0018782:42121-42140 Msa1369390:intron 30.0%
CCGGTAATAATTGAATGTAA+AGG - tig0018782:42253-42272 None:intergenic 30.0%
ATGTCATATCTCTTTCAATG+TGG + tig0018782:42387-42406 Msa1369390:intron 30.0%
TGTCATATCTCTTTCAATGT+GGG + tig0018782:42388-42407 Msa1369390:intron 30.0%
TCAGAAATCAACAATTCTTC+CGG - tig0018782:42500-42519 None:intergenic 30.0%
AGCTAACTAATTGAATATGC+AGG + tig0018782:42597-42616 Msa1369390:intron 30.0%
CTAATTGAATATGCAGGTTA+AGG + tig0018782:42603-42622 Msa1369390:intron 30.0%
! TGAAGAATTTGGTGAATTTG+AGG + tig0018782:42642-42661 Msa1369390:CDS 30.0%
! AATTTGGTGAATTTGAGGAA+TGG + tig0018782:42647-42666 Msa1369390:CDS 30.0%
AGACATGTCTAGGTAATTTA+AGG - tig0018782:42839-42858 None:intergenic 30.0%
TCTCCAATTAGTGTATGTTA+AGG - tig0018782:42940-42959 None:intergenic 30.0%
TGACAGATTCTAAGTTTGAA+GGG - tig0018782:43020-43039 None:intergenic 30.0%
ATGACAGATTCTAAGTTTGA+AGG - tig0018782:43021-43040 None:intergenic 30.0%
AACTTAGAATCTGTCATGTT+TGG + tig0018782:43024-43043 Msa1369390:CDS 30.0%
AAATAAACCTGCCATAAGAT+TGG - tig0018782:43369-43388 None:intergenic 30.0%
GAATAAGTATCAAACAGATC+AGG - tig0018782:43490-43509 None:intergenic 30.0%
TTAAAATTCTTCAAAGCAGC+AGG - tig0018782:43559-43578 None:intergenic 30.0%
ATTCACTATCAAGAATTTGG+AGG - tig0018782:43648-43667 None:intergenic 30.0%
CAGATTCACTATCAAGAATT+TGG - tig0018782:43651-43670 None:intergenic 30.0%
!! CAAATTCTTGATAGTGAATC+TGG + tig0018782:43649-43668 Msa1369390:CDS 30.0%
ACAAAGCTTATATCTGAAAG+AGG + tig0018782:43691-43710 Msa1369390:CDS 30.0%
!!! AGACATCCTTATTTTCTTCT+AGG + tig0018782:43754-43773 Msa1369390:CDS 30.0%
ATATACTGACATTATCATGC+TGG - tig0018782:43832-43851 None:intergenic 30.0%
ATAGTTGTAACAGTTGGAGT+TGG - tig0018782:41484-41503 None:intergenic 35.0%
!! TTGTAGTGTTGGTATTGACA+CGG - tig0018782:41591-41610 None:intergenic 35.0%
TGCATTACACTTTGTAGTGT+TGG - tig0018782:41602-41621 None:intergenic 35.0%
! AGATGGGAGTTTCTTCTTTT+TGG + tig0018782:41730-41749 Msa1369390:CDS 35.0%
!!! TTCTTTTTGGTGGACTCATA+TGG + tig0018782:41743-41762 Msa1369390:CDS 35.0%
ATATACTTAACTGCAAGACC+AGG + tig0018782:41766-41785 Msa1369390:CDS 35.0%
AGCAAAAAGGTAAGCATCAA+TGG - tig0018782:41806-41825 None:intergenic 35.0%
! TTAGCAAAACCAAGTTGAAG+AGG - tig0018782:41829-41848 None:intergenic 35.0%
ATCTCCAACAAGAAAATCAC+CGG - tig0018782:41878-41897 None:intergenic 35.0%
TTGGAGATAAAATCGGTGAA+GGG + tig0018782:41890-41909 Msa1369390:CDS 35.0%
!!! TGTTTTGGTCTCAAAGAATG+TGG + tig0018782:41936-41955 Msa1369390:CDS 35.0%
CGTAGTGTCTCTTAGAATTT+GGG + tig0018782:42287-42306 Msa1369390:intron 35.0%
GTAACTCAACCCTACAAAAT+CGG + tig0018782:42316-42335 Msa1369390:intron 35.0%
TTGAATATGCAGGTTAAGGT+TGG + tig0018782:42607-42626 Msa1369390:intron 35.0%
AGGTTAAGGTTGGAATTCAA+GGG + tig0018782:42617-42636 Msa1369390:intron 35.0%
TTGAGGAATGGTTCAATTAC+CGG + tig0018782:42659-42678 Msa1369390:CDS 35.0%
ACAAACTCACAGTTCACAAA+AGG + tig0018782:42742-42761 Msa1369390:CDS 35.0%
AGTTCACAAAAGGTGGAAAA+TGG + tig0018782:42752-42771 Msa1369390:CDS 35.0%
!! ATGGCTTGTTTGGAAATTTG+AGG + tig0018782:42771-42790 Msa1369390:CDS 35.0%
TGCAATCGAAATATGAGTCA+AGG - tig0018782:42799-42818 None:intergenic 35.0%
TTGCTTGTACTTCATTTAGG+TGG + tig0018782:42868-42887 Msa1369390:intron 35.0%
! CGTTCTTTTCACCAATCTTA+TGG + tig0018782:43355-43374 Msa1369390:CDS 35.0%
TGTTTGATACTTATTCGGCT+GGG + tig0018782:43494-43513 Msa1369390:CDS 35.0%
TGGGATTGTACTACTTCAAA+TGG + tig0018782:43513-43532 Msa1369390:CDS 35.0%
AAATGGCAATACCAACCTTA+AGG + tig0018782:43530-43549 Msa1369390:CDS 35.0%
ACTATCAAGAATTTGGAGGT+CGG - tig0018782:43644-43663 None:intergenic 35.0%
AGATAAACGTCCTCTTCTTA+GGG - tig0018782:43719-43738 None:intergenic 35.0%
!!! CATCCTTATTTTCTTCTAGG+AGG + tig0018782:43757-43776 Msa1369390:CDS 35.0%
TCACCTCCTAGAAGAAAATA+AGG - tig0018782:43763-43782 None:intergenic 35.0%
CAGAATGAAATGATGAGAGA+AGG - tig0018782:44013-44032 None:intergenic 35.0%
!! ACCAATGGTTTGTTGGATGT+TGG + tig0018782:41640-41659 Msa1369390:CDS 40.0%
ACCAACATCCAACAAACCAT+TGG - tig0018782:41644-41663 None:intergenic 40.0%
!! AATGGTTTGTTGGATGTTGG+TGG + tig0018782:41643-41662 Msa1369390:CDS 40.0%
!! ATGGTTTGTTGGATGTTGGT+GGG + tig0018782:41644-41663 Msa1369390:CDS 40.0%
ATCGAAGCAAAGAAGGAATG+TGG - tig0018782:41672-41691 None:intergenic 40.0%
ATTCCTTCTTTGCTTCGATC+AGG + tig0018782:41673-41692 Msa1369390:CDS 40.0%
! TGGGAGTTTCTTCTTTTTGG+TGG + tig0018782:41733-41752 Msa1369390:CDS 40.0%
! CAAGTTGAAGAGGAGCAAAA+AGG - tig0018782:41819-41838 None:intergenic 40.0%
! CTTTTTGCTCCTCTTCAACT+TGG + tig0018782:41817-41836 Msa1369390:CDS 40.0%
GGAAGGAGAAATTTGAAGAC+CGG + tig0018782:41856-41875 Msa1369390:CDS 40.0%
! AAGACCGGTGATTTTCTTGT+TGG + tig0018782:41871-41890 Msa1369390:CDS 40.0%
GTTGGAGATAAAATCGGTGA+AGG + tig0018782:41889-41908 Msa1369390:CDS 40.0%
AAAATCGGTGAAGGGTCATT+TGG + tig0018782:41898-41917 Msa1369390:CDS 40.0%
TTTGGTCTCAAAGAATGTGG+TGG + tig0018782:41939-41958 Msa1369390:CDS 40.0%
!! AAAGAATGTGGTGGATGTTG+AGG + tig0018782:41948-41967 Msa1369390:CDS 40.0%
AAAATCCAAGGCAACAAGGT+TGG + tig0018782:41984-42003 Msa1369390:CDS 40.0%
AAGGTTGGAACCCAAAACTA+AGG + tig0018782:41999-42018 Msa1369390:CDS 40.0%
! CCTAATGCTATAGCCTGTTT+TGG - tig0018782:42137-42156 None:intergenic 40.0%
CCAAAACAGGCTATAGCATT+AGG + tig0018782:42134-42153 Msa1369390:intron 40.0%
AATGTAAAGGACATGTGTCG+TGG - tig0018782:42240-42259 None:intergenic 40.0%
GCGTAGTGTCTCTTAGAATT+TGG + tig0018782:42286-42305 Msa1369390:intron 40.0%
GTGTCTCTTAGAATTTGGGT+TGG + tig0018782:42291-42310 Msa1369390:intron 40.0%
!! CCTTACAAGCCGATTTTGTA+GGG - tig0018782:42328-42347 None:intergenic 40.0%
!! ACCTTACAAGCCGATTTTGT+AGG - tig0018782:42329-42348 None:intergenic 40.0%
! CAAGCAACAACTTTAGCTTC+CGG + tig0018782:42478-42497 Msa1369390:intron 40.0%
CAGGTTAAGGTTGGAATTCA+AGG + tig0018782:42616-42635 Msa1369390:intron 40.0%
GGTTAAGGTTGGAATTCAAG+GGG + tig0018782:42618-42637 Msa1369390:intron 40.0%
ATTCAAGGGGCTGAAGAATT+TGG + tig0018782:42631-42650 Msa1369390:CDS 40.0%
! TGACTTCCTTGGAAGTTTTG+TGG + tig0018782:42711-42730 Msa1369390:CDS 40.0%
TATCAGCCACAAAACTTCCA+AGG - tig0018782:42720-42739 None:intergenic 40.0%
AACTCACAGTTCACAAAAGG+TGG + tig0018782:42745-42764 Msa1369390:CDS 40.0%
!! AAGGTGGAAAATGGCTTGTT+TGG + tig0018782:42761-42780 Msa1369390:CDS 40.0%
GTTGCGCTCTTTCATGTAAT+CGG - tig0018782:42995-43014 None:intergenic 40.0%
TATAAAGCCAGCCAACTTAG+TGG + tig0018782:43164-43183 Msa1369390:CDS 40.0%
AACTTAGTGGTCACCAAACA+GGG + tig0018782:43177-43196 Msa1369390:CDS 40.0%
GAGTTTAATCTGTCCCTGTT+TGG - tig0018782:43193-43212 None:intergenic 40.0%
! CTTTTCACCAATCTTATGGC+AGG + tig0018782:43359-43378 Msa1369390:CDS 40.0%
CTGTTTGATACTTATTCGGC+TGG + tig0018782:43493-43512 Msa1369390:CDS 40.0%
CTATCAAGAATTTGGAGGTC+GGG - tig0018782:43643-43662 None:intergenic 40.0%
!! CTTGATAGTGAATCTGGTAG+AGG + tig0018782:43655-43674 Msa1369390:CDS 40.0%
GATAAACGTCCTCTTCTTAG+GGG - tig0018782:43718-43737 None:intergenic 40.0%
CAGATAAACGTCCTCTTCTT+AGG - tig0018782:43720-43739 None:intergenic 40.0%
!! TTTTCTTCTAGGAGGTGATC+AGG + tig0018782:43765-43784 Msa1369390:CDS 40.0%
!! AAGAGCACTTGGTGGTTATA+GGG + tig0018782:43978-43997 Msa1369390:three_prime_UTR 40.0%
!! TGGTTTGTTGGATGTTGGTG+GGG + tig0018782:41645-41664 Msa1369390:CDS 45.0%
AGTCCTGATCGAAGCAAAGA+AGG - tig0018782:41679-41698 None:intergenic 45.0%
GCAAGACCAGGTGTTCTTAT+TGG + tig0018782:41778-41797 Msa1369390:CDS 45.0%
ATGGCACCAATAAGAACACC+TGG - tig0018782:41787-41806 None:intergenic 45.0%
GGACAAGAGAGGAAAATCCA+AGG + tig0018782:41972-41991 Msa1369390:CDS 45.0%
GAGGAAAATCCAAGGCAACA+AGG + tig0018782:41980-41999 Msa1369390:CDS 45.0%
TCGGATTGAAGATGTGTCCA+CGG + tig0018782:42177-42196 Msa1369390:intron 45.0%
CTACGCTGACATTAACATGC+CGG - tig0018782:42272-42291 None:intergenic 45.0%
!! CCCTACAAAATCGGCTTGTA+AGG + tig0018782:42325-42344 Msa1369390:intron 45.0%
GGTCCCTTCACAATGTCTAT+CGG + tig0018782:42409-42428 Msa1369390:intron 45.0%
GTCCCTTCACAATGTCTATC+GGG + tig0018782:42410-42429 Msa1369390:intron 45.0%
CTCCCGATAGACATTGTGAA+GGG - tig0018782:42415-42434 None:intergenic 45.0%
GTAAAGTAAAGCCGCATGGA+TGG - tig0018782:42459-42478 None:intergenic 45.0%
GCTTGTAAAGTAAAGCCGCA+TGG - tig0018782:42463-42482 None:intergenic 45.0%
AGGAAGTCAGCACATGTTTC+AGG - tig0018782:42700-42719 None:intergenic 45.0%
!! GAAACATGTGCTGACTTCCT+TGG + tig0018782:42700-42719 Msa1369390:CDS 45.0%
TGGAGAGTTATCCGTATCAC+AGG + tig0018782:42954-42973 Msa1369390:intron 45.0%
GGAGAGTTATCCGTATCACA+GGG + tig0018782:42955-42974 Msa1369390:intron 45.0%
AGTACGATCTCCCTGTGATA+CGG - tig0018782:42968-42987 None:intergenic 45.0%
ATGTTTGGACGTGTGTTGCA+AGG + tig0018782:43039-43058 Msa1369390:CDS 45.0%
! CTGTTTGGTGACCACTAAGT+TGG - tig0018782:43178-43197 None:intergenic 45.0%
CAACTTAGTGGTCACCAAAC+AGG + tig0018782:43176-43195 Msa1369390:CDS 45.0%
CGTAATTCTTTCCGATCCGA+AGG - tig0018782:43239-43258 None:intergenic 45.0%
GCAATAGTCGGGATCCAAAA+GGG - tig0018782:43274-43293 None:intergenic 45.0%
! TGGGAGTACATAGAGTTCTG+GGG - tig0018782:43298-43317 None:intergenic 45.0%
! CTGGGAGTACATAGAGTTCT+GGG - tig0018782:43299-43318 None:intergenic 45.0%
! TCTGGGAGTACATAGAGTTC+TGG - tig0018782:43300-43319 None:intergenic 45.0%
!! GAGGACTTGGTGTTTCTTCT+GGG - tig0018782:43317-43336 None:intergenic 45.0%
GGTGAAAAGAACGCAGCAAT+TGG - tig0018782:43348-43367 None:intergenic 45.0%
ATAGTGAATCTGGTAGAGGC+TGG + tig0018782:43659-43678 Msa1369390:CDS 45.0%
TAGTGAATCTGGTAGAGGCT+GGG + tig0018782:43660-43679 Msa1369390:CDS 45.0%
!! CAAACACTAGCAAGAGCACT+TGG + tig0018782:43967-43986 Msa1369390:three_prime_UTR 45.0%
!! CAAGAGCACTTGGTGGTTAT+AGG + tig0018782:43977-43996 Msa1369390:three_prime_UTR 45.0%
ATAGGAAGACGTGGCAAGAG+AGG + tig0018782:41360-41379 Msa1369390:five_prime_UTR 50.0%
!! GAATGTGGTGGATGTTGAGG+TGG + tig0018782:41951-41970 Msa1369390:CDS 50.0%
GATGTTGAGGTGGACAAGAG+AGG + tig0018782:41961-41980 Msa1369390:CDS 50.0%
GCTATGTACCACAGACACCT+CGG + tig0018782:42158-42177 Msa1369390:intron 50.0%
! TCTTCAATCCGAGGTGTCTG+TGG - tig0018782:42169-42188 None:intergenic 50.0%
GTGGACACATCTTCAATCCG+AGG - tig0018782:42178-42197 None:intergenic 50.0%
TTGAAGATGTGTCCACGGCT+TGG + tig0018782:42182-42201 Msa1369390:intron 50.0%
ATATGTGTCATGCCAAGCCG+TGG - tig0018782:42197-42216 None:intergenic 50.0%
GCTCCCGATAGACATTGTGA+AGG - tig0018782:42416-42435 None:intergenic 50.0%
! TTGGTGACCACTAAGTTGGC+TGG - tig0018782:43174-43193 None:intergenic 50.0%
TTGGTGCAGCAACAGACCTT+CGG + tig0018782:43220-43239 Msa1369390:CDS 50.0%
GGCAATAGTCGGGATCCAAA+AGG - tig0018782:43275-43294 None:intergenic 50.0%
!! GGAGTACATAGAGTTCTGGG+GGG - tig0018782:43296-43315 None:intergenic 50.0%
! GGGAGTACATAGAGTTCTGG+GGG - tig0018782:43297-43316 None:intergenic 50.0%
!! GGAGGACTTGGTGTTTCTTC+TGG - tig0018782:43318-43337 None:intergenic 50.0%
CAAAGCAGCAGGAGACCTTA+AGG - tig0018782:43548-43567 None:intergenic 50.0%
GAAAGAGGTCCCCTAAGAAG+AGG + tig0018782:43706-43725 Msa1369390:CDS 50.0%
!! ACACTAGCAAGAGCACTTGG+TGG + tig0018782:43970-43989 Msa1369390:three_prime_UTR 50.0%
GGGTTCCAACCTTGTTGCCT+TGG - tig0018782:41992-42011 None:intergenic 55.0%
!! CAGGTGCTGCTCTAGATAGC+CGG - tig0018782:42681-42700 None:intergenic 55.0%
GCAGCAACAGACCTTCGGAT+CGG + tig0018782:43225-43244 Msa1369390:CDS 55.0%
AGTCGGGATCCAAAAGGGTG+CGG - tig0018782:43269-43288 None:intergenic 55.0%
!! AGTTCTGGGGGGCAATAGTC+GGG - tig0018782:43285-43304 None:intergenic 55.0%
!! GAGTTCTGGGGGGCAATAGT+CGG - tig0018782:43286-43305 None:intergenic 55.0%
AAGAACGCAGCAATTGGCGC+TGG - tig0018782:43342-43361 None:intergenic 55.0%
GCAGCAGGAGACCTTAAGGT+TGG - tig0018782:43544-43563 None:intergenic 55.0%
ATCTGGTAGAGGCTGGGACT+TGG + tig0018782:43666-43685 Msa1369390:CDS 55.0%
! CGTTCCTGACCGCACCCTTT+TGG + tig0018782:43257-43276 Msa1369390:CDS 60.0%
! GGATCCAAAAGGGTGCGGTC+AGG - tig0018782:43264-43283 None:intergenic 60.0%
!! ATTGGCGCTGGTGGAGGACT+TGG - tig0018782:43330-43349 None:intergenic 60.0%
! AACGCAGCAATTGGCGCTGG+TGG - tig0018782:43339-43358 None:intergenic 60.0%
! GGAGGGAGTATACTCGCCTC+AGG + tig0018782:43617-43636 Msa1369390:CDS 60.0%
GAATTTGGAGGTCGGGCCTG+AGG - tig0018782:43636-43655 None:intergenic 60.0%
!! GCAGCAATTGGCGCTGGTGG+AGG - tig0018782:43336-43355 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0018782 gene 41360 44207 41360 ID=Msa1369390;Name=Msa1369390
tig0018782 mRNA 41360 44207 41360 ID=Msa1369390-mRNA-1;Parent=Msa1369390;Name=Msa1369390-mRNA-1;_AED=0.04;_eAED=0.04;_QI=70|1|1|1|0.6|0.5|6|230|513
tig0018782 exon 41360 42041 41360 ID=Msa1369390-mRNA-1:exon:1070;Parent=Msa1369390-mRNA-1
tig0018782 exon 42619 42792 42619 ID=Msa1369390-mRNA-1:exon:1071;Parent=Msa1369390-mRNA-1
tig0018782 exon 42976 43380 42976 ID=Msa1369390-mRNA-1:exon:1072;Parent=Msa1369390-mRNA-1
tig0018782 exon 43478 43841 43478 ID=Msa1369390-mRNA-1:exon:1073;Parent=Msa1369390-mRNA-1
tig0018782 exon 43939 44093 43939 ID=Msa1369390-mRNA-1:exon:1074;Parent=Msa1369390-mRNA-1
tig0018782 exon 44146 44207 44146 ID=Msa1369390-mRNA-1:exon:1075;Parent=Msa1369390-mRNA-1
tig0018782 five_prime_UTR 41360 41429 41360 ID=Msa1369390-mRNA-1:five_prime_utr;Parent=Msa1369390-mRNA-1
tig0018782 CDS 41430 42041 41430 ID=Msa1369390-mRNA-1:cds;Parent=Msa1369390-mRNA-1
tig0018782 CDS 42619 42792 42619 ID=Msa1369390-mRNA-1:cds;Parent=Msa1369390-mRNA-1
tig0018782 CDS 42976 43380 42976 ID=Msa1369390-mRNA-1:cds;Parent=Msa1369390-mRNA-1
tig0018782 CDS 43478 43828 43478 ID=Msa1369390-mRNA-1:cds;Parent=Msa1369390-mRNA-1
tig0018782 three_prime_UTR 43829 43841 43829 ID=Msa1369390-mRNA-1:three_prime_utr;Parent=Msa1369390-mRNA-1
tig0018782 three_prime_UTR 43939 44093 43939 ID=Msa1369390-mRNA-1:three_prime_utr;Parent=Msa1369390-mRNA-1
tig0018782 three_prime_UTR 44146 44207 44146 ID=Msa1369390-mRNA-1:three_prime_utr;Parent=Msa1369390-mRNA-1
Gene Sequence

>Msa1369390

ATGAATGAGCATCATATCATAACAAAAACAATAATGGTTTCTTTGCTTCATCCAACTCCAACTGTTACAACTATACTTAAGCAGCGAACATCAACAATCTGTTTCTTCTGTCCCTTAAAACATACAAATGTTTCTTTCTTAACTAACACAAACACAAACCGTGTCAATACCAACACTACAAAGTGTAATGCATTTTTTGATAATAATTTCACCAATGGTTTGTTGGATGTTGGTGGGGACCACATTCCTTCTTTGCTTCGATCAGGACTACTTCAGTTTCAAGAATTATCAGACATGCAAAGATGGGAGTTTCTTCTTTTTGGTGGACTCATATGGATATACTTAACTGCAAGACCAGGTGTTCTTATTGGTGCCATTGATGCTTACCTTTTTGCTCCTCTTCAACTTGGTTTTGCTAATTTATCTGGAAGGAGAAATTTGAAGACCGGTGATTTTCTTGTTGGAGATAAAATCGGTGAAGGGTCATTTGGTGTTGTTTATTCTGGTGTTTTGGTCTCAAAGAATGTGGTGGATGTTGAGGTGGACAAGAGAGGAAAATCCAAGGCAACAAGGTTGGAACCCAAAACTAAGGATAAAGTTATTCTCAAAAAGGTTAAGGTTGGAATTCAAGGGGCTGAAGAATTTGGTGAATTTGAGGAATGGTTCAATTACCGGCTATCTAGAGCAGCACCTGAAACATGTGCTGACTTCCTTGGAAGTTTTGTGGCTGATAAAACAAACTCACAGTTCACAAAAGGTGGAAAATGGCTTGTTTGGAAATTTGAGGGAGATCGTACTCTTGCCGATTACATGAAAGAGCGCAACTTCCCTTCAAACTTAGAATCTGTCATGTTTGGACGTGTGTTGCAAGGCGTAGATTCTTCTAGACGAAATGCATTGATCATCAAGCAAATCATGCGCCAGATAATTACTTCTCTTAAGAAAATTCATGATACAGGCATTGTTCACAGAGATATAAAGCCAGCCAACTTAGTGGTCACCAAACAGGGACAGATTAAACTCATTGATTTTGGTGCAGCAACAGACCTTCGGATCGGAAAGAATTACGTTCCTGACCGCACCCTTTTGGATCCCGACTATTGCCCCCCAGAACTCTATGTACTCCCAGAAGAAACACCAAGTCCTCCACCAGCGCCAATTGCTGCGTTCTTTTCACCAATCTTATGGCAGTTAAACAGCCCTGATCTGTTTGATACTTATTCGGCTGGGATTGTACTACTTCAAATGGCAATACCAACCTTAAGGTCTCCTGCTGCTTTGAAGAATTTTAATTTGGAAATAAAAACCTGTGGATATGATTTGAAAAAATGGAGGGAGTATACTCGCCTCAGGCCCGACCTCCAAATTCTTGATAGTGAATCTGGTAGAGGCTGGGACTTGGCAACAAAGCTTATATCTGAAAGAGGTCCCCTAAGAAGAGGACGTTTATCTGCTGCTTCAGCTTTGAGACATCCTTATTTTCTTCTAGGAGGTGATCAGGCAGCTGCAGTTCTTTCAAAATTAAGCTTAAGTAGAAAGTAA

Protein sequence

>Msa1369390

MNEHHIITKTIMVSLLHPTPTVTTILKQRTSTICFFCPLKHTNVSFLTNTNTNRVNTNTTKCNAFFDNNFTNGLLDVGGDHIPSLLRSGLLQFQELSDMQRWEFLLFGGLIWIYLTARPGVLIGAIDAYLFAPLQLGFANLSGRRNLKTGDFLVGDKIGEGSFGVVYSGVLVSKNVVDVEVDKRGKSKATRLEPKTKDKVILKKVKVGIQGAEEFGEFEEWFNYRLSRAAPETCADFLGSFVADKTNSQFTKGGKWLVWKFEGDRTLADYMKERNFPSNLESVMFGRVLQGVDSSRRNALIIKQIMRQIITSLKKIHDTGIVHRDIKPANLVVTKQGQIKLIDFGAATDLRIGKNYVPDRTLLDPDYCPPELYVLPEETPSPPPAPIAAFFSPILWQLNSPDLFDTYSAGIVLLQMAIPTLRSPAALKNFNLEIKTCGYDLKKWREYTRLRPDLQILDSESGRGWDLATKLISERGPLRRGRLSAASALRHPYFLLGGDQAAAVLSKLSLSRK*