AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0147540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0147540 MtrunA17_Chr1g0156891 88.219 365 10 1 1 332 1 365 0.0 637
Msa0147540 MtrunA17_Chr1g0156901 64.387 351 91 2 14 331 21 370 5.17e-166 467
Msa0147540 MtrunA17_Chr3g0142921 62.178 349 96 2 19 331 9 357 3.22e-157 444
Msa0147540 MtrunA17_Chr1g0156911 60.615 358 105 3 8 332 4 358 1.05e-154 437
Msa0147540 MtrunA17_Chr1g0156921 60.057 353 106 3 14 332 13 364 1.89e-150 427
Msa0147540 MtrunA17_Chr1g0156931 57.955 352 113 3 14 332 12 361 1.32e-147 420
Msa0147540 MtrunA17_Chr3g0142941 58.383 334 105 2 28 328 32 364 4.60e-144 411
Msa0147540 MtrunA17_Chr5g0405821 47.429 350 149 3 17 331 17 366 7.56e-110 324
Msa0147540 MtrunA17_Chr8g0371491 48.036 331 137 3 35 331 28 357 3.35e-105 312
Msa0147540 MtrunA17_Chr5g0405831 44.011 359 160 5 8 331 13 365 3.46e-99 297
Msa0147540 MtrunA17_Chr8g0371471 45.045 333 146 4 36 332 32 363 2.27e-98 295
Msa0147540 MtrunA17_Chr8g0371481 45.210 334 145 5 36 332 32 364 3.78e-97 291
Msa0147540 MtrunA17_Chr5g0438621 35.905 337 173 4 13 315 8 335 3.44e-72 227
Msa0147540 MtrunA17_Chr1g0157001 38.329 347 177 5 19 331 12 355 3.46e-72 228
Msa0147540 MtrunA17_Chr2g0283191 35.519 366 188 8 11 330 7 370 4.09e-70 223
Msa0147540 MtrunA17_Chr4g0046151 36.752 351 175 6 11 319 7 352 2.98e-69 220
Msa0147540 MtrunA17_Chr3g0105401 35.278 360 188 6 9 332 1 351 2.25e-68 218
Msa0147540 MtrunA17_Chr5g0438631 37.117 326 169 5 41 331 26 350 3.04e-68 217
Msa0147540 MtrunA17_Chr5g0432101 35.756 344 180 6 13 317 1 342 5.60e-67 214
Msa0147540 MtrunA17_Chr3g0120861 37.500 312 160 5 38 315 33 343 3.78e-65 209
Msa0147540 MtrunA17_Chr5g0438641 35.143 350 185 6 17 332 13 354 9.86e-64 206
Msa0147540 MtrunA17_Chr8g0341001 35.191 341 182 8 20 324 10 347 1.60e-63 205
Msa0147540 MtrunA17_Chr6g0463261 78.632 117 25 0 96 212 3 119 1.60e-61 192
Msa0147540 MtrunA17_Chr2g0320671 35.103 339 177 6 16 319 9 339 3.14e-61 199
Msa0147540 MtrunA17_Chr2g0330781 34.483 319 173 5 41 324 29 346 1.91e-58 192
Msa0147540 MtrunA17_Chr5g0437421 34.169 319 170 4 41 320 30 347 1.97e-57 189
Msa0147540 MtrunA17_Chr4g0027521 32.286 350 191 6 12 324 4 344 1.13e-54 182
Msa0147540 MtrunA17_Chr7g0275011 32.692 364 199 8 6 332 1 355 3.83e-51 173
Msa0147540 MtrunA17_Chr8g0380041 33.333 333 177 9 19 314 10 334 1.73e-50 171
Msa0147540 MtrunA17_Chr2g0285061 32.764 351 183 13 2 314 1 336 1.45e-49 169
Msa0147540 MtrunA17_Chr7g0275021 31.302 361 198 7 7 329 8 356 5.40e-48 165
Msa0147540 MtrunA17_Chr1g0182811 33.531 337 186 7 32 332 22 356 1.27e-47 164
Msa0147540 MtrunA17_Chr3g0086641 32.845 341 186 11 10 313 6 340 4.56e-47 162
Msa0147540 MtrunA17_Chr1g0189901 32.907 313 173 6 43 320 31 341 1.68e-46 161
Msa0147540 MtrunA17_Chr7g0274991 34.579 321 168 8 37 320 27 342 2.25e-45 158
Msa0147540 MtrunA17_Chr3g0077571 33.657 309 167 8 40 315 27 330 2.28e-45 158
Msa0147540 MtrunA17_Chr4g0017431 32.036 334 188 7 18 315 6 336 4.48e-45 157
Msa0147540 MtrunA17_Chr6g0457921 32.194 351 195 8 10 324 1 344 2.14e-44 155
Msa0147540 MtrunA17_Chr3g0131321 32.907 313 170 7 43 317 34 344 5.44e-44 155
Msa0147540 MtrunA17_Chr7g0275001 34.483 319 171 6 43 325 25 341 7.83e-44 154
Msa0147540 MtrunA17_Chr1g0189891 33.648 318 167 7 43 324 29 338 2.13e-43 153
Msa0147540 MtrunA17_Chr4g0008851 32.931 331 182 8 39 332 28 355 3.85e-43 152
Msa0147540 MtrunA17_Chr8g0374101 31.161 353 186 11 33 331 27 376 8.75e-43 151
Msa0147540 MtrunA17_Chr1g0189931 32.615 325 181 6 43 332 32 353 1.60e-42 150
Msa0147540 MtrunA17_Chr3g0077581 31.304 345 185 11 15 313 4 342 5.47e-42 149
Msa0147540 MtrunA17_Chr7g0215961 30.571 350 192 8 10 324 1 334 6.49e-42 149
Msa0147540 MtrunA17_Chr5g0396511 32.484 314 175 7 45 323 48 359 4.90e-41 147
Msa0147540 MtrunA17_Chr5g0444401 32.288 319 179 5 41 323 26 343 5.99e-40 144
Msa0147540 MtrunA17_Chr5g0434621 30.492 305 173 6 46 315 28 328 1.08e-39 143
Msa0147540 MtrunA17_Chr3g0099151 32.143 336 184 8 22 317 66 397 4.78e-39 142
Msa0147540 MtrunA17_Chr3g0099161 31.054 351 196 6 6 320 64 404 1.92e-38 141
Msa0147540 MtrunA17_Chr3g0092131 28.125 352 204 10 13 327 1 340 1.11e-36 135
Msa0147540 MtrunA17_Chr2g0301641 29.395 347 194 7 16 319 16 354 4.89e-36 134
Msa0147540 MtrunA17_Chr2g0294311 30.682 352 181 14 21 320 15 355 1.42e-35 132
Msa0147540 MtrunA17_Chr2g0294301 29.814 322 180 9 41 320 33 350 1.58e-35 132
Msa0147540 MtrunA17_Chr2g0284941 34.130 293 164 11 41 316 31 311 3.82e-35 130
Msa0147540 MtrunA17_Chr4g0060811 28.438 320 188 8 45 327 29 344 5.08e-35 130
Msa0147540 MtrunA17_Chr2g0285001 32.945 343 180 12 16 321 8 337 1.04e-34 130
Msa0147540 MtrunA17_Chr3g0099231 30.503 318 179 6 41 320 26 339 1.70e-34 130
Msa0147540 MtrunA17_Chr4g0068441 30.650 323 178 10 40 320 32 350 2.27e-34 129
Msa0147540 MtrunA17_Chr7g0229591 39.665 179 106 2 41 218 28 205 2.56e-33 122
Msa0147540 MtrunA17_Chr3g0085881 31.715 309 165 12 40 315 30 325 8.93e-33 124
Msa0147540 MtrunA17_Chr2g0284991 31.511 311 165 10 41 314 31 330 1.27e-32 124
Msa0147540 MtrunA17_Chr2g0284951 32.154 311 159 12 41 314 31 326 1.88e-31 121
Msa0147540 MtrunA17_Chr8g0380031 29.464 336 182 11 19 317 63 380 1.20e-30 119
Msa0147540 MtrunA17_Chr5g0420811 31.250 336 184 14 11 313 4 325 3.48e-30 117
Msa0147540 MtrunA17_Chr8g0349341 31.471 340 182 12 13 314 11 337 9.96e-30 116
Msa0147540 MtrunA17_Chr2g0284921 28.662 314 176 9 39 315 30 332 8.06e-29 114
Msa0147540 MtrunA17_Chr8g0344941 29.012 324 184 9 40 323 38 355 1.31e-28 114
Msa0147540 MtrunA17_Chr8g0349331 29.653 317 201 11 15 324 13 314 4.02e-26 106
Msa0147540 MtrunA17_Chr8g0344931 28.399 331 192 9 20 315 14 334 4.83e-26 106
Msa0147540 MtrunA17_Chr8g0349321 28.693 352 195 13 13 324 11 346 9.97e-26 105
Msa0147540 MtrunA17_Chr3g0104821 27.273 341 178 13 43 325 44 372 2.15e-25 105
Msa0147540 MtrunA17_Chr6g0469511 46.018 113 60 1 41 153 28 139 5.67e-25 98.2
Msa0147540 MtrunA17_Chr4g0027571 30.660 212 113 5 147 324 3 214 1.48e-24 99.8
Msa0147540 MtrunA17_Chr3g0112821 27.964 329 183 14 43 325 30 350 2.50e-24 101
Msa0147540 MtrunA17_Chr1g0160031 26.703 367 200 13 21 330 18 372 1.15e-23 100
Msa0147540 MtrunA17_Chr3g0093031 28.529 333 181 14 43 325 30 355 1.78e-23 99.4
Msa0147540 MtrunA17_Chr4g0027561 50.000 96 47 1 41 136 28 122 4.00e-23 93.6
Msa0147540 MtrunA17_Chr8g0349301 29.431 299 172 11 13 282 11 299 5.87e-23 97.4
Msa0147540 MtrunA17_Chr1g0160011 25.989 354 194 12 21 317 18 360 1.95e-22 96.7
Msa0147540 MtrunA17_Chr7g0229581 37.931 116 71 1 210 324 32 147 1.65e-21 89.7
Msa0147540 MtrunA17_Chr2g0317271 27.577 359 198 14 13 325 1 343 7.61e-21 92.0
Msa0147540 MtrunA17_Chr8g0381581 24.859 354 195 12 38 330 35 378 1.05e-20 92.0
Msa0147540 MtrunA17_Chr3g0085231 27.653 311 174 10 41 315 29 324 8.82e-20 89.0
Msa0147540 MtrunA17_Chr8g0370951 24.478 335 209 7 20 313 8 339 1.57e-19 88.2
Msa0147540 MtrunA17_Chr2g0283481 28.571 336 176 14 40 321 44 369 3.10e-19 87.8
Msa0147540 MtrunA17_Chr8g0370981 34.637 179 99 6 15 185 23 191 7.26e-19 86.7
Msa0147540 MtrunA17_Chr4g0018571 35.345 116 74 1 210 324 55 170 2.00e-18 81.6
Msa0147540 MtrunA17_Chr2g0321991 43.089 123 63 5 16 135 8 126 2.77e-18 79.7
Msa0147540 MtrunA17_Chr6g0450731 24.251 367 217 12 10 330 1 352 5.79e-18 83.6
Msa0147540 MtrunA17_Chr8g0347751 25.501 349 188 13 43 330 36 373 6.80e-18 83.6
Msa0147540 MtrunA17_Chr1g0159991 24.390 369 207 13 10 317 1 358 1.21e-17 82.8
Msa0147540 MtrunA17_Chr1g0189921 52.273 88 40 2 43 130 31 116 1.55e-17 78.6
Msa0147540 MtrunA17_Chr1g0178931 24.159 327 193 12 44 332 38 347 9.25e-17 80.1
Msa0147540 MtrunA17_Chr2g0283511 28.249 354 194 17 20 321 10 355 2.21e-16 79.3
Msa0147540 MtrunA17_Chr4g0057991 23.978 367 210 14 6 317 1 353 8.70e-15 74.7
Msa0147540 MtrunA17_Chr6g0455661 51.613 93 40 4 41 133 29 116 1.10e-14 74.7
Msa0147540 MtrunA17_Chr8g0370971 37.037 108 63 2 40 143 35 141 6.79e-13 65.9
Msa0147540 MtrunA17_Chr7g0266061 24.085 328 177 15 41 319 40 344 7.28e-13 68.6
Msa0147540 MtrunA17_Chr5g0432081 52.083 48 23 0 270 317 10 57 7.67e-13 63.2
Msa0147540 MtrunA17_Chr3g0104801 36.170 141 76 6 43 176 44 177 9.81e-13 65.9
Msa0147540 MtrunA17_Chr4g0018561 55.556 54 23 1 41 94 28 80 1.01e-12 63.5
Msa0147540 MtrunA17_Chr3g0104831 28.814 118 76 3 216 325 174 291 7.48e-12 65.1
Msa0147540 MtrunA17_Chr4g0027581 29.710 138 74 2 210 324 50 187 1.22e-11 63.2
Msa0147540 MtrunA17_Chr2g0308201 61.818 55 19 2 41 95 33 85 1.97e-11 59.7
Msa0147540 MtrunA17_Chr7g0228261 36.111 72 45 1 261 332 11 81 2.22e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0147540 AT1G75890.2 48.315 356 150 2 7 328 11 366 9.39e-118 344
Msa0147540 AT1G75890.3 48.315 356 150 2 7 328 40 395 1.69e-117 345
Msa0147540 AT1G75890.1 46.612 369 150 3 7 328 11 379 3.74e-114 336
Msa0147540 AT1G75900.1 48.127 347 144 4 20 332 20 364 6.90e-110 324
Msa0147540 AT1G75880.2 46.240 359 156 4 9 331 16 373 8.02e-110 325
Msa0147540 AT1G75880.1 46.111 360 156 5 9 331 16 374 4.80e-108 320
Msa0147540 AT5G42170.1 44.910 334 152 4 30 332 37 369 3.38e-103 308
Msa0147540 AT3G14820.1 43.732 343 154 5 19 327 8 345 1.82e-92 280
Msa0147540 AT1G20120.1 43.465 329 147 4 38 332 73 396 4.70e-88 270
Msa0147540 AT3G43570.1 42.138 318 170 6 19 329 7 317 1.28e-86 263
Msa0147540 AT1G59406.1 43.119 327 146 6 38 329 25 346 4.00e-86 263
Msa0147540 AT1G59030.1 43.119 327 146 6 38 329 25 346 4.00e-86 263
Msa0147540 AT1G58725.1 43.119 327 146 6 38 329 25 346 4.00e-86 263
Msa0147540 AT1G20132.1 42.813 327 152 5 38 330 56 381 6.00e-84 259
Msa0147540 AT1G58520.3 41.896 327 143 7 38 329 25 339 2.83e-78 243
Msa0147540 AT1G58525.1 41.896 327 143 7 38 329 25 339 2.83e-78 243
Msa0147540 AT2G30220.1 38.506 348 173 4 19 328 12 356 1.97e-75 236
Msa0147540 AT2G31540.1 38.068 352 178 4 12 325 6 355 5.21e-74 233
Msa0147540 AT1G58430.1 38.529 340 172 4 12 316 6 343 3.40e-73 230
Msa0147540 AT1G20130.2 39.039 333 161 5 38 329 179 510 1.15e-72 234
Msa0147540 AT1G20130.1 39.039 333 161 5 38 329 199 530 1.88e-72 234
Msa0147540 AT2G30310.1 37.538 333 171 3 19 316 12 342 2.51e-72 228
Msa0147540 AT1G06990.1 35.942 345 177 5 15 316 1 344 4.63e-71 225
Msa0147540 AT1G73610.1 36.782 348 177 7 10 325 1 337 8.46e-70 221
Msa0147540 AT2G04570.1 38.369 331 165 6 19 315 8 333 3.08e-68 218
Msa0147540 AT2G40250.1 36.280 328 170 5 37 326 30 356 4.88e-67 214
Msa0147540 AT2G24560.1 36.012 336 178 4 16 316 9 342 8.01e-67 214
Msa0147540 AT3G43550.1 43.007 286 123 6 19 270 7 286 4.86e-66 210
Msa0147540 AT5G45960.1 37.237 333 167 5 40 331 44 375 8.74e-66 212
Msa0147540 AT5G03810.1 35.965 342 180 7 15 321 4 341 2.19e-64 207
Msa0147540 AT5G63170.1 37.013 308 153 4 40 316 25 322 1.71e-63 205
Msa0147540 AT4G26790.1 36.145 332 171 10 33 327 18 345 3.07e-63 204
Msa0147540 AT4G26790.2 36.145 332 171 10 33 327 18 345 3.07e-63 204
Msa0147540 AT2G42990.1 36.570 309 161 5 39 313 24 331 8.37e-63 203
Msa0147540 AT1G23500.1 38.532 327 152 6 34 325 26 338 3.38e-62 202
Msa0147540 AT1G75920.2 38.182 330 155 7 33 325 19 336 2.80e-61 199
Msa0147540 AT3G16370.1 34.146 328 180 4 32 324 19 345 5.12e-59 194
Msa0147540 AT1G20135.1 37.419 310 151 6 43 320 29 327 8.29e-59 192
Msa0147540 AT5G03820.1 34.097 349 189 8 10 321 1 345 1.59e-58 192
Msa0147540 AT5G03820.2 34.985 343 179 8 19 321 35 373 2.04e-58 193
Msa0147540 AT1G75910.1 36.890 328 161 6 38 329 23 340 2.55e-58 191
Msa0147540 AT1G75920.1 36.522 345 155 8 33 325 14 346 2.98e-57 189
Msa0147540 AT5G22810.1 34.385 317 168 7 41 319 32 346 1.41e-55 185
Msa0147540 AT3G53100.1 33.623 345 184 7 19 326 9 345 2.03e-53 179
Msa0147540 AT5G45950.1 31.515 330 191 6 34 332 31 356 1.10e-52 177
Msa0147540 AT1G75920.4 36.610 295 139 6 68 325 25 308 2.25e-50 170
Msa0147540 AT1G29670.1 34.024 338 182 10 14 315 3 335 5.28e-50 171
Msa0147540 AT1G29670.2 34.024 338 182 10 14 315 71 403 2.03e-49 171
Msa0147540 AT5G18430.1 33.148 359 191 8 12 329 2 352 1.06e-48 167
Msa0147540 AT5G33370.1 33.718 347 192 7 21 332 8 351 5.27e-48 165
Msa0147540 AT3G04290.1 33.231 325 180 6 35 324 21 343 4.95e-46 160
Msa0147540 AT5G45670.1 32.335 334 183 9 19 315 7 334 1.43e-45 159
Msa0147540 AT2G24560.2 33.793 290 155 4 16 270 9 296 1.46e-45 157
Msa0147540 AT1G75930.1 34.568 324 167 10 38 326 24 337 3.59e-45 157
Msa0147540 AT4G28780.1 30.484 351 207 6 13 328 1 349 6.28e-45 157
Msa0147540 AT4G18970.1 32.372 312 170 8 41 315 26 333 8.85e-44 154
Msa0147540 AT3G50400.1 30.747 348 198 8 10 315 1 347 1.00e-43 154
Msa0147540 AT4G18970.2 32.372 312 170 8 41 315 26 333 2.42e-43 154
Msa0147540 AT2G23540.1 30.747 348 196 11 12 315 14 360 3.93e-43 153
Msa0147540 AT1G75920.3 32.727 330 142 8 33 325 19 305 1.25e-42 150
Msa0147540 AT1G29660.1 31.437 334 181 9 19 315 14 336 1.47e-42 151
Msa0147540 AT5G08460.1 33.333 312 167 6 42 314 48 357 2.06e-42 151
Msa0147540 AT1G71250.1 32.635 334 182 8 22 315 16 346 1.06e-41 149
Msa0147540 AT1G71691.2 32.362 309 170 8 41 315 53 356 1.56e-41 149
Msa0147540 AT1G33811.1 30.435 345 190 11 17 315 4 344 3.52e-41 147
Msa0147540 AT5G15720.1 33.435 329 174 11 41 329 28 351 4.20e-41 147
Msa0147540 AT5G37690.1 28.829 333 191 8 21 315 6 330 9.94e-39 140
Msa0147540 AT4G10950.2 31.290 310 176 7 41 315 69 376 2.87e-38 140
Msa0147540 AT2G19010.1 32.704 318 151 13 40 315 27 323 2.42e-37 137
Msa0147540 AT2G19010.2 32.704 318 151 13 40 315 57 353 2.98e-37 137
Msa0147540 AT5G55050.1 33.231 325 169 10 39 320 35 354 7.59e-37 136
Msa0147540 AT1G74460.1 28.011 357 209 10 10 332 1 343 2.11e-36 135
Msa0147540 AT4G10950.1 31.290 310 172 8 41 315 69 372 1.81e-35 133
Msa0147540 AT2G19060.1 32.188 320 160 14 41 320 28 330 8.39e-35 130
Msa0147540 AT1G53920.1 28.736 348 204 10 12 319 14 357 1.95e-34 130
Msa0147540 AT5G37690.2 27.928 333 186 9 21 315 6 322 3.54e-34 128
Msa0147540 AT5G41890.1 30.636 346 178 12 45 331 33 375 7.29e-34 128
Msa0147540 AT2G19050.1 30.032 313 164 11 41 315 29 324 8.25e-34 127
Msa0147540 AT5G33370.2 30.368 326 184 7 21 311 8 325 3.46e-32 122
Msa0147540 AT2G31550.1 32.673 202 101 2 150 316 1 202 6.77e-31 116
Msa0147540 AT2G03980.2 32.476 311 163 13 42 313 42 344 2.84e-30 118
Msa0147540 AT2G03980.3 32.476 311 163 13 42 313 42 344 2.84e-30 118
Msa0147540 AT2G03980.1 32.476 311 163 13 42 313 42 344 2.84e-30 118
Msa0147540 AT2G03980.4 32.476 311 163 13 42 313 42 344 2.84e-30 118
Msa0147540 AT1G71120.1 30.284 317 175 9 40 319 28 335 9.09e-30 117
Msa0147540 AT1G53940.2 28.329 353 203 12 15 324 11 356 2.42e-29 116
Msa0147540 AT2G04020.1 43.429 175 75 8 42 206 42 202 3.63e-27 107
Msa0147540 AT5G40990.1 29.609 358 196 16 12 324 8 354 5.10e-27 109
Msa0147540 AT2G04020.2 34.122 296 136 17 42 313 42 302 1.28e-26 107
Msa0147540 AT4G30140.1 30.225 311 166 12 40 315 30 324 8.52e-26 105
Msa0147540 AT5G15720.2 32.963 270 136 11 41 270 28 292 1.49e-25 104
Msa0147540 AT4G16230.1 39.623 159 92 3 41 198 28 183 4.25e-25 102
Msa0147540 AT2G19050.2 30.556 252 130 9 41 257 29 270 6.24e-25 102
Msa0147540 AT1G53990.1 28.412 359 186 14 15 324 9 345 8.55e-24 100
Msa0147540 AT1G71691.3 29.924 264 146 8 41 270 53 311 9.38e-24 99.8
Msa0147540 AT1G54790.3 22.396 384 223 11 6 330 1 368 1.67e-23 100
Msa0147540 AT1G71691.1 26.562 256 151 6 94 315 3 255 1.97e-22 95.5
Msa0147540 AT5G15720.3 28.947 266 148 8 104 329 56 320 2.58e-22 96.3
Msa0147540 AT3G05180.1 24.850 334 191 9 42 321 35 362 1.28e-21 94.7
Msa0147540 AT3G14225.2 28.135 327 181 14 43 324 37 354 5.99e-21 92.8
Msa0147540 AT3G14225.1 28.182 330 181 14 43 324 37 358 7.49e-21 92.4
Msa0147540 AT1G28650.1 27.913 369 197 16 5 319 6 359 8.22e-21 92.4
Msa0147540 AT1G28640.1 28.024 339 176 15 43 324 35 362 1.41e-20 92.0
Msa0147540 AT1G53940.1 33.180 217 123 8 15 227 11 209 1.46e-20 90.9
Msa0147540 AT5G14450.1 24.802 379 217 10 9 330 10 377 3.08e-20 90.9
Msa0147540 AT1G28610.2 27.513 378 196 15 6 325 1 358 5.13e-20 90.1
Msa0147540 AT2G27360.1 27.824 363 190 14 13 319 10 356 1.96e-19 88.6
Msa0147540 AT1G28580.1 27.246 334 185 12 43 324 37 364 6.41e-19 87.0
Msa0147540 AT5G03610.1 26.730 318 174 12 44 319 44 344 3.76e-18 84.7
Msa0147540 AT1G28590.1 27.688 372 193 17 7 321 7 359 8.77e-18 84.0
Msa0147540 AT1G28570.1 26.882 372 203 14 9 325 5 362 2.81e-17 82.4
Msa0147540 AT5G45910.1 26.629 353 186 16 35 325 22 363 6.56e-17 81.3
Msa0147540 AT1G31550.2 26.113 337 186 13 43 325 36 363 6.85e-17 81.3
Msa0147540 AT1G56670.1 26.404 356 194 16 11 315 9 347 1.91e-16 79.7
Msa0147540 AT1G28600.1 27.193 342 186 15 37 324 25 357 2.74e-16 79.3
Msa0147540 AT1G09390.1 26.705 352 199 14 10 315 6 344 6.26e-16 78.2
Msa0147540 AT4G16233.1 36.792 106 62 2 221 321 8 113 1.39e-15 72.8
Msa0147540 AT1G31550.1 25.298 336 187 13 43 325 36 360 1.44e-14 74.3
Msa0147540 AT4G16220.1 46.875 96 46 3 41 136 28 118 1.78e-14 72.4
Msa0147540 AT1G28610.1 31.132 212 113 9 6 202 1 194 2.47e-12 66.2
Msa0147540 AT1G54000.1 23.899 318 188 11 38 317 31 332 7.95e-12 66.2

Find 74 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATTGATTGCTTGATTATT+TGG 0.132648 1_4:-7498151 None:intergenic
TCCTGATTATGCTGATCTTA+TGG 0.251081 1_4:+7495982 Msa0147540:CDS
TCCTGCTGTTTGGATAATTC+TGG 0.287953 1_4:-7496567 None:intergenic
AAATCACTGGGCTGGAGATT+TGG 0.299729 1_4:-7495582 None:intergenic
GTTTGGATAATTCTGGTTAA+AGG 0.300373 1_4:-7496560 None:intergenic
AAAGAAAGGGAATTCATTAA+AGG 0.307233 1_4:-7493694 None:intergenic
ATGATATGGAGTTTGTCTTT+TGG 0.317220 1_4:+7497995 Msa0147540:CDS
GTTCCAGCAGTGTTGGTGTT+TGG 0.319690 1_4:+7493793 Msa0147540:CDS
GGATATAAAGTGGAAGATAA+AGG 0.350027 1_4:+7497907 Msa0147540:intron
AATGGTAGTGAACTTATAAA+TGG 0.350537 1_4:-7498372 None:intergenic
AGAATTTCTACCAGCATACT+TGG 0.356901 1_4:+7495557 Msa0147540:CDS
TTCTACGTGTCCAAATGATA+TGG 0.363550 1_4:+7497981 Msa0147540:CDS
GCATATGCTAGTATATATTA+TGG 0.364303 1_4:+7493669 Msa0147540:exon
ATTGTAAACTCTAATAAATA+TGG 0.372700 1_4:+7496628 Msa0147540:CDS
CCTTTAAAATCTTTCCCATA+AGG 0.388007 1_4:-7493883 None:intergenic
AAGACAAACTCCATATCATT+TGG 0.391476 1_4:-7497991 None:intergenic
ATCCCAAAACAAAACAAAAC+TGG 0.397944 1_4:-7498099 None:intergenic
TGTCGATTTAGCATTTGTTA+TGG 0.398099 1_4:+7493550 Msa0147540:five_prime_UTR
CTGTGGTCAGTTGAAGAATT+AGG 0.406265 1_4:+7495528 Msa0147540:intron
CAGTCAGCAATATCATTATC+TGG 0.410346 1_4:+7495794 Msa0147540:intron
ACCATAAGATCAGCATAATC+AGG 0.417873 1_4:-7495983 None:intergenic
GGAGATTCTATCGTGGATAC+AGG 0.422024 1_4:+7493814 Msa0147540:CDS
GGAAAATTAAGAGGACTTGT+TGG 0.429168 1_4:+7495845 Msa0147540:CDS
CATAATCAGGAAAATCATAC+TGG 0.431311 1_4:-7495970 None:intergenic
ATTTAAACTTAATGCTTACA+TGG 0.432977 1_4:-7498194 None:intergenic
CTGAAACATTTGGTGGAAGT+TGG 0.433865 1_4:-7493771 None:intergenic
ATGTAAACAATCCTGCTGTT+TGG 0.434657 1_4:-7496577 None:intergenic
CCATTTCAGAGAACAGCTGC+TGG 0.443466 1_4:+7496457 Msa0147540:intron
TACAACAGCAAATTGTCAAA+GGG 0.443709 1_4:+7496529 Msa0147540:CDS
GATATAAAGTGGAAGATAAA+GGG 0.448591 1_4:+7497908 Msa0147540:CDS
TTTAAAGGAGGGATTCCAAC+TGG 0.449758 1_4:+7493898 Msa0147540:CDS
CAGCCCAGTGATTTACCTAC+TGG 0.453091 1_4:+7495591 Msa0147540:CDS
TCTCCAAACACCAACACTGC+TGG 0.455954 1_4:-7493796 None:intergenic
CAAGTAATAATATTATGAAA+TGG 0.458422 1_4:-7493723 None:intergenic
ATGCTTCTCATATTTAGAAA+AGG 0.461940 1_4:+7493615 Msa0147540:five_prime_UTR
ATTCTTTGAACAAATCTAGT+TGG 0.462739 1_4:-7495817 None:intergenic
ACCAGAATTATCCAAACAGC+AGG 0.467487 1_4:+7496566 Msa0147540:CDS
ACTGCTGGAACTGAAACATT+TGG 0.480723 1_4:-7493781 None:intergenic
TTGGACACGTAGAAGACAAA+TGG 0.488601 1_4:-7497972 None:intergenic
AAAGTTCCCTCAGACTTCAT+AGG 0.491281 1_4:+7493937 Msa0147540:CDS
CAACTGAAAGTGTTTACAAA+AGG 0.491375 1_4:+7498031 Msa0147540:CDS
CTTGTTGCATGTAAAACAAA+GGG 0.493568 1_4:+7493742 Msa0147540:CDS
TTAAAATCTTTCCCATAAGG+TGG 0.495261 1_4:-7493880 None:intergenic
GTAATTTACAGGATATAAAG+TGG 0.495715 1_4:+7497897 Msa0147540:intron
GATAAAGGGTGCTGTGGCAC+GGG 0.506909 1_4:+7497922 Msa0147540:CDS
TCCTTTGACATCTCAAACTG+CGG 0.523946 1_4:+7495647 Msa0147540:CDS
TGTTTCAGTTCCAGCAGTGT+TGG 0.525916 1_4:+7493786 Msa0147540:CDS
AGACAGAACAAACTTCATCT+TGG 0.527036 1_4:+7495871 Msa0147540:CDS
ATACAACAGCAAATTGTCAA+AGG 0.532727 1_4:+7496528 Msa0147540:CDS
CCATTGCTAAATCTTCCAGT+TGG 0.536733 1_4:-7493913 None:intergenic
ACTTGTTGCATGTAAAACAA+AGG 0.543187 1_4:+7493741 Msa0147540:CDS
GAATACATAGGAAAATTAAG+AGG 0.545890 1_4:+7495836 Msa0147540:CDS
GCGAGACAAGAAATATGTGT+TGG 0.549615 1_4:-7495936 None:intergenic
CAGTAGGTAAATCACTGGGC+TGG 0.554672 1_4:-7495590 None:intergenic
AGATAAAGGGTGCTGTGGCA+CGG 0.555443 1_4:+7497921 Msa0147540:CDS
CACACCAGTAGGTAAATCAC+TGG 0.556309 1_4:-7495595 None:intergenic
GCTGGAACTGAAACATTTGG+TGG 0.559299 1_4:-7493778 None:intergenic
AGATTTGGATCCAAGTATGC+TGG 0.578680 1_4:-7495567 None:intergenic
CTGTGGCACGGGCATAATTG+AGG 0.590447 1_4:+7497933 Msa0147540:CDS
TGTAGTACCTATGAAGTCTG+AGG 0.593842 1_4:-7493944 None:intergenic
CAATCAATTATGCATAGACA+TGG 0.607930 1_4:+7498164 Msa0147540:three_prime_UTR
TTACAATGATGTCATGCAGA+GGG 0.615433 1_4:-7496612 None:intergenic
GATGCAAAACACACACCAGT+AGG 0.626175 1_4:-7495606 None:intergenic
CCAACTGGAAGATTTAGCAA+TGG 0.628801 1_4:+7493913 Msa0147540:CDS
GATTTGTTCAAAGAATACAT+AGG 0.632933 1_4:+7495824 Msa0147540:CDS
GTGGAAGATAAAGGGTGCTG+TGG 0.635794 1_4:+7497916 Msa0147540:CDS
ACAACAGCAAATTGTCAAAG+GGG 0.637819 1_4:+7496530 Msa0147540:CDS
GTAGTACCTATGAAGTCTGA+GGG 0.653162 1_4:-7493943 None:intergenic
TTTACAATGATGTCATGCAG+AGG 0.656205 1_4:-7496613 None:intergenic
TTTCAGAGAACAGCTGCTGG+AGG 0.657240 1_4:+7496460 Msa0147540:intron
ACCGCAGTTTGAGATGTCAA+AGG 0.661904 1_4:-7495648 None:intergenic
CATTACTGCCCAATACCACA+AGG 0.663942 1_4:-7495907 None:intergenic
GGTGTTTGGAGATTCTATCG+TGG 0.689331 1_4:+7493807 Msa0147540:CDS
ACACCAGTAGGTAAATCACT+GGG 0.703062 1_4:-7495594 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTACTAACTTTTAAA+TGG + chr1_4:7494086-7494105 Msa0147540:intron 10.0%
!! AATAATGCATAATATATATA+AGG + chr1_4:7494526-7494545 Msa0147540:intron 10.0%
!!! TTCAATACATATATTTTAAT+CGG - chr1_4:7496207-7496226 None:intergenic 10.0%
!! CAAAAAAAATAAAAAATACT+TGG - chr1_4:7496348-7496367 None:intergenic 10.0%
!!! CAAGTATTTTTTATTTTTTT+TGG + chr1_4:7496346-7496365 Msa0147540:intron 10.0%
!! TAAATTCTTAAAAAAAATGA+GGG - chr1_4:7496818-7496837 None:intergenic 10.0%
!! TTAAATTCTTAAAAAAAATG+AGG - chr1_4:7496819-7496838 None:intergenic 10.0%
!!! AAATTCTACTTTTTATTTTT+TGG + chr1_4:7497623-7497642 Msa0147540:intron 10.0%
!! CAAGTAATAATATTATGAAA+TGG - chr1_4:7493726-7493745 None:intergenic 15.0%
!! AAAATGCAATAAATAAAAAC+TGG + chr1_4:7494255-7494274 Msa0147540:intron 15.0%
!!! TAGTATGATTATGTTTTATA+TGG - chr1_4:7494636-7494655 None:intergenic 15.0%
!! ATATAAAACATAATCATACT+AGG + chr1_4:7494635-7494654 Msa0147540:intron 15.0%
!! TTGTAAAATAAATACATACA+TGG + chr1_4:7494904-7494923 Msa0147540:intron 15.0%
!! TGTAAAATAAATACATACAT+GGG + chr1_4:7494905-7494924 Msa0147540:intron 15.0%
!!! TAACTTCTAAAAAGATATTA+GGG - chr1_4:7495689-7495708 None:intergenic 15.0%
!!! TCACTTTTATAGTTATAAAA+TGG + chr1_4:7496306-7496325 Msa0147540:intron 15.0%
!! AAAATAAAAAATACTTGGTA+AGG - chr1_4:7496343-7496362 None:intergenic 15.0%
!! ATTGTAAACTCTAATAAATA+TGG + chr1_4:7496628-7496647 Msa0147540:CDS 15.0%
!! AAATTAAAGAAGTTTCATAT+AGG - chr1_4:7497024-7497043 None:intergenic 15.0%
!!! TTTGAAATTTTTATACTTTG+AGG - chr1_4:7497156-7497175 None:intergenic 15.0%
!!! CTAGTGTTTTTTTTTTTTTT+TGG + chr1_4:7497854-7497873 Msa0147540:intron 15.0%
!! ACTGATATATATAAGACAAA+AGG + chr1_4:7494026-7494045 Msa0147540:intron 20.0%
!! CTGATATATATAAGACAAAA+GGG + chr1_4:7494027-7494046 Msa0147540:intron 20.0%
!!! TATGTTTTATATGGAATATC+AGG - chr1_4:7494627-7494646 None:intergenic 20.0%
!!! ATTTTAGAAACTAAAGTGAA+TGG - chr1_4:7494733-7494752 None:intergenic 20.0%
!! AAAAAAATATAGTAACTAGC+TGG - chr1_4:7494841-7494860 None:intergenic 20.0%
!! TTGTATGATGATAATTTCTA+TGG - chr1_4:7494971-7494990 None:intergenic 20.0%
!! ATCACAAACAAGTATATAAA+CGG - chr1_4:7495376-7495395 None:intergenic 20.0%
!! TTTATTAACTAGTGCTTTAA+GGG - chr1_4:7495418-7495437 None:intergenic 20.0%
!! ATTTATTAACTAGTGCTTTA+AGG - chr1_4:7495419-7495438 None:intergenic 20.0%
!!! AACTTCTAAAAAGATATTAG+GGG - chr1_4:7495688-7495707 None:intergenic 20.0%
!!! GTAACTTCTAAAAAGATATT+AGG - chr1_4:7495690-7495709 None:intergenic 20.0%
!!! CAAGTTAAGTAAGTTTTTAA+TGG - chr1_4:7495712-7495731 None:intergenic 20.0%
!! GTTGAAAATTAAAAAATAGG+TGG - chr1_4:7496771-7496790 None:intergenic 20.0%
!! AGGGTTGAAAATTAAAAAAT+AGG - chr1_4:7496774-7496793 None:intergenic 20.0%
!! AAAATTGAACCTAAACTTTA+AGG + chr1_4:7496870-7496889 Msa0147540:intron 20.0%
!! ACAATTTATAAACACATTAG+TGG + chr1_4:7496976-7496995 Msa0147540:intron 20.0%
!!! ACAATAACTCTTTTCATATA+AGG - chr1_4:7497302-7497321 None:intergenic 20.0%
!!! TCATTACAGTTTCAATTTTA+GGG + chr1_4:7497457-7497476 Msa0147540:intron 20.0%
!! CTAATATTCCATTTGTAAAT+TGG + chr1_4:7497490-7497509 Msa0147540:intron 20.0%
!!! TATGTTCCTACATTTTAATT+AGG - chr1_4:7497695-7497714 None:intergenic 20.0%
!! TTAGTGAAATTGTAATTTAC+AGG + chr1_4:7497886-7497905 Msa0147540:intron 20.0%
!! TAATTGATTGCTTGATTATT+TGG - chr1_4:7498154-7498173 None:intergenic 20.0%
!! ATTTAAACTTAATGCTTACA+TGG - chr1_4:7498197-7498216 None:intergenic 20.0%
! ATGCTTCTCATATTTAGAAA+AGG + chr1_4:7493615-7493634 Msa0147540:five_prime_UTR 25.0%
! GCATATGCTAGTATATATTA+TGG + chr1_4:7493669-7493688 Msa0147540:exon 25.0%
! AAAGAAAGGGAATTCATTAA+AGG - chr1_4:7493697-7493716 None:intergenic 25.0%
! GAAATGGAGAAAAAAAGAAA+GGG - chr1_4:7493710-7493729 None:intergenic 25.0%
! TGAAATGGAGAAAAAAAGAA+AGG - chr1_4:7493711-7493730 None:intergenic 25.0%
!! ATGTTTAGAATACTCTAAGA+TGG - chr1_4:7494113-7494132 None:intergenic 25.0%
!! TCTTAGAGTATTCTAAACAT+AGG + chr1_4:7494113-7494132 Msa0147540:intron 25.0%
!! CTTAGAGTATTCTAAACATA+GGG + chr1_4:7494114-7494133 Msa0147540:intron 25.0%
!! CATAATTGAATCGGTTTAAT+CGG + chr1_4:7494168-7494187 Msa0147540:intron 25.0%
! TAGTTTATTTATCCGTGATT+CGG - chr1_4:7494202-7494221 None:intergenic 25.0%
!! AAGACATATTTTCCTTTTGT+GGG - chr1_4:7494348-7494367 None:intergenic 25.0%
! TAATGACTTAATCTTGATTG+TGG - chr1_4:7494670-7494689 None:intergenic 25.0%
! ACAATCAAGATTAAGTCATT+AGG + chr1_4:7494669-7494688 Msa0147540:intron 25.0%
! TTAGTGAGTGTAAATACAAA+AGG - chr1_4:7494787-7494806 None:intergenic 25.0%
! GATAATTTCTATGGAATCTT+GGG - chr1_4:7494962-7494981 None:intergenic 25.0%
! TGATAATTTCTATGGAATCT+TGG - chr1_4:7494963-7494982 None:intergenic 25.0%
!! TATGTAGTACATTTTTGAAC+AGG + chr1_4:7495071-7495090 Msa0147540:intron 25.0%
!! ATGTAGTACATTTTTGAACA+GGG + chr1_4:7495072-7495091 Msa0147540:intron 25.0%
! ATGATACAAGTAAGAATAGA+TGG + chr1_4:7495213-7495232 Msa0147540:intron 25.0%
!! CAAGTATATAAACGGATTTA+GGG - chr1_4:7495368-7495387 None:intergenic 25.0%
!! ACAAGTATATAAACGGATTT+AGG - chr1_4:7495369-7495388 None:intergenic 25.0%
! ATTCTTTGAACAAATCTAGT+TGG - chr1_4:7495820-7495839 None:intergenic 25.0%
!! GATTTGTTCAAAGAATACAT+AGG + chr1_4:7495824-7495843 Msa0147540:CDS 25.0%
! GAATACATAGGAAAATTAAG+AGG + chr1_4:7495836-7495855 Msa0147540:CDS 25.0%
! TTCAGCTTCTAATTTCTTAA+AGG + chr1_4:7496009-7496028 Msa0147540:intron 25.0%
! TTAACAAGTTGCAAATATCT+TGG + chr1_4:7496044-7496063 Msa0147540:intron 25.0%
! TAACAAGTTGCAAATATCTT+GGG + chr1_4:7496045-7496064 Msa0147540:intron 25.0%
! CAACACACATTCATTTAAAT+TGG + chr1_4:7496108-7496127 Msa0147540:intron 25.0%
! TAATCGGTTGAAATTCAAAT+TGG - chr1_4:7496191-7496210 None:intergenic 25.0%
!! ATGGTAATTACAACTTTTGT+TGG + chr1_4:7496647-7496666 Msa0147540:intron 25.0%
! TTTGTTGGATTATTTGAACA+AGG + chr1_4:7496662-7496681 Msa0147540:intron 25.0%
!!! GTTAAGATGTTTTTAAGTAG+TGG - chr1_4:7496734-7496753 None:intergenic 25.0%
! TCTCTGATGCTAATTAATTT+GGG - chr1_4:7496851-7496870 None:intergenic 25.0%
! TTCTCTGATGCTAATTAATT+TGG - chr1_4:7496852-7496871 None:intergenic 25.0%
! TTTGAATATGAAATCCACTT+AGG - chr1_4:7496938-7496957 None:intergenic 25.0%
! TTAAGTTTAAATGAGACTTG+AGG - chr1_4:7497058-7497077 None:intergenic 25.0%
! TTATTTGACCCATTTGTAAA+TGG + chr1_4:7497081-7497100 Msa0147540:intron 25.0%
! CTATTAGTCCATTTACAAAT+GGG - chr1_4:7497092-7497111 None:intergenic 25.0%
! ACTATTAGTCCATTTACAAA+TGG - chr1_4:7497093-7497112 None:intergenic 25.0%
! GACTATTCATTACACATTTA+GGG - chr1_4:7497125-7497144 None:intergenic 25.0%
! TGACTATTCATTACACATTT+AGG - chr1_4:7497126-7497145 None:intergenic 25.0%
! ACAATAAGTATGCATATTGA+AGG - chr1_4:7497238-7497257 None:intergenic 25.0%
!! CTCATTACAGTTTCAATTTT+AGG + chr1_4:7497456-7497475 Msa0147540:intron 25.0%
! TCTACTATCCAATTTACAAA+TGG - chr1_4:7497501-7497520 None:intergenic 25.0%
!!! TCTTTTAAGCTTTTTCTCAA+AGG + chr1_4:7497543-7497562 Msa0147540:intron 25.0%
!!! CTTTTAAGCTTTTTCTCAAA+GGG + chr1_4:7497544-7497563 Msa0147540:intron 25.0%
!!! TTTTTAGTTGTATAGTCTCA+AGG + chr1_4:7497592-7497611 Msa0147540:intron 25.0%
!!! TTTATTTTTTGGCTAGTTAG+TGG + chr1_4:7497634-7497653 Msa0147540:intron 25.0%
!!! TTATTTTTTGGCTAGTTAGT+GGG + chr1_4:7497635-7497654 Msa0147540:intron 25.0%
! GTAATTTACAGGATATAAAG+TGG + chr1_4:7497897-7497916 Msa0147540:intron 25.0%
! GATATAAAGTGGAAGATAAA+GGG + chr1_4:7497908-7497927 Msa0147540:CDS 25.0%
!!! TTGACGTATTTTTGGATAAT+AGG - chr1_4:7498066-7498085 None:intergenic 25.0%
!!! CAAAATCACTTTTCATTAGT+TGG + chr1_4:7498256-7498275 Msa0147540:three_prime_UTR 25.0%
!! TGTCGATTTAGCATTTGTTA+TGG + chr1_4:7493550-7493569 Msa0147540:five_prime_UTR 30.0%
! ACTTGTTGCATGTAAAACAA+AGG + chr1_4:7493741-7493760 Msa0147540:CDS 30.0%
CTTGTTGCATGTAAAACAAA+GGG + chr1_4:7493742-7493761 Msa0147540:CDS 30.0%
TTAAAATCTTTCCCATAAGG+TGG - chr1_4:7493883-7493902 None:intergenic 30.0%
!! CCTTTAAAATCTTTCCCATA+AGG - chr1_4:7493886-7493905 None:intergenic 30.0%
! CCTTATGGGAAAGATTTTAA+AGG + chr1_4:7493883-7493902 Msa0147540:CDS 30.0%
!! TATGGGAAAGATTTTAAAGG+AGG + chr1_4:7493886-7493905 Msa0147540:CDS 30.0%
!! ATGGGAAAGATTTTAAAGGA+GGG + chr1_4:7493887-7493906 Msa0147540:CDS 30.0%
TGAAATACTACTTGTCTAGT+AGG - chr1_4:7493988-7494007 None:intergenic 30.0%
CTAAACATAGGGATTCAAAA+TGG + chr1_4:7494125-7494144 Msa0147540:intron 30.0%
ATGGAATCATTATGACATCT+AGG + chr1_4:7494144-7494163 Msa0147540:intron 30.0%
CATCTAGGTCATAATTGAAT+CGG + chr1_4:7494159-7494178 Msa0147540:intron 30.0%
AAAACTGGTTGAATCAATTG+CGG + chr1_4:7494270-7494289 Msa0147540:intron 30.0%
! CAAGACATATTTTCCTTTTG+TGG - chr1_4:7494349-7494368 None:intergenic 30.0%
! AAAAGTAGCAACTTTTGCAT+TGG - chr1_4:7494399-7494418 None:intergenic 30.0%
TATGCTTAAACAATGCTCTT+AGG + chr1_4:7494420-7494439 Msa0147540:intron 30.0%
ATGCTTAAACAATGCTCTTA+GGG + chr1_4:7494421-7494440 Msa0147540:intron 30.0%
!!! CTTGTATGCAGTCTTTTTTA+TGG - chr1_4:7494574-7494593 None:intergenic 30.0%
TGCATACAAGATAAAGAATG+TGG + chr1_4:7494584-7494603 Msa0147540:intron 30.0%
GATAAAGAATGTGGTTATCT+AGG + chr1_4:7494593-7494612 Msa0147540:intron 30.0%
TAGAAACTAAAGTGAATGGA+CGG - chr1_4:7494729-7494748 None:intergenic 30.0%
AATAAATACATACATGGGAG+AGG + chr1_4:7494910-7494929 Msa0147540:intron 30.0%
! ACATTTTTGAACAGGGTAAT+CGG + chr1_4:7495079-7495098 Msa0147540:intron 30.0%
ATATGGAAATATCAACCAGA+CGG - chr1_4:7495261-7495280 None:intergenic 30.0%
!!! TAACCTACTTTTTTGTACTG+TGG + chr1_4:7495511-7495530 Msa0147540:intron 30.0%
CATAATCAGGAAAATCATAC+TGG - chr1_4:7495973-7495992 None:intergenic 30.0%
TGATATCCTCTGAATCATAT+AGG + chr1_4:7496144-7496163 Msa0147540:intron 30.0%
TTCCTTTCATTTGTATTGAG+AGG - chr1_4:7496377-7496396 None:intergenic 30.0%
TGAAAGGAAATATATGAGCT+AGG + chr1_4:7496388-7496407 Msa0147540:intron 30.0%
ATACAACAGCAAATTGTCAA+AGG + chr1_4:7496528-7496547 Msa0147540:CDS 30.0%
TACAACAGCAAATTGTCAAA+GGG + chr1_4:7496529-7496548 Msa0147540:CDS 30.0%
! GTTTGGATAATTCTGGTTAA+AGG - chr1_4:7496563-7496582 None:intergenic 30.0%
ATTATTTGAACAAGGTCACT+TGG + chr1_4:7496670-7496689 Msa0147540:intron 30.0%
TTATTTGAACAAGGTCACTT+GGG + chr1_4:7496671-7496690 Msa0147540:intron 30.0%
TCTCATTTAGACTTGAATGA+GGG - chr1_4:7496793-7496812 None:intergenic 30.0%
! TGATGCTAATTAATTTGGGT+GGG - chr1_4:7496847-7496866 None:intergenic 30.0%
TATGCTTCTCCTTAAAGTTT+AGG - chr1_4:7496882-7496901 None:intergenic 30.0%
ATATGAAATCCACTTAGGTT+AGG - chr1_4:7496933-7496952 None:intergenic 30.0%
ACTAATGAGTTGCACAATTA+GGG - chr1_4:7497184-7497203 None:intergenic 30.0%
AACTAATGAGTTGCACAATT+AGG - chr1_4:7497185-7497204 None:intergenic 30.0%
TGAGAAAAAGCTTAAAAGAG+AGG - chr1_4:7497542-7497561 None:intergenic 30.0%
CACATGCCTAATTAAAATGT+AGG + chr1_4:7497686-7497705 Msa0147540:intron 30.0%
TTATTCATCCTCACTTTGTA+TGG + chr1_4:7497811-7497830 Msa0147540:intron 30.0%
ATAAGTTTCCATACAAAGTG+AGG - chr1_4:7497822-7497841 None:intergenic 30.0%
GGATATAAAGTGGAAGATAA+AGG + chr1_4:7497907-7497926 Msa0147540:intron 30.0%
AAGACAAACTCCATATCATT+TGG - chr1_4:7497994-7498013 None:intergenic 30.0%
! ATGATATGGAGTTTGTCTTT+TGG + chr1_4:7497995-7498014 Msa0147540:CDS 30.0%
! TGATATGGAGTTTGTCTTTT+GGG + chr1_4:7497996-7498015 Msa0147540:CDS 30.0%
! CTTTTGTAAACACTTTCAGT+TGG - chr1_4:7498033-7498052 None:intergenic 30.0%
!! CAACTGAAAGTGTTTACAAA+AGG + chr1_4:7498031-7498050 Msa0147540:CDS 30.0%
! TGAAATCGTTGACGTATTTT+TGG - chr1_4:7498074-7498093 None:intergenic 30.0%
!!! TGACCAGTTTTGTTTTGTTT+TGG + chr1_4:7498096-7498115 Msa0147540:exon 30.0%
!!! GACCAGTTTTGTTTTGTTTT+GGG + chr1_4:7498097-7498116 Msa0147540:exon 30.0%
ATCCCAAAACAAAACAAAAC+TGG - chr1_4:7498102-7498121 None:intergenic 30.0%
CAATCAATTATGCATAGACA+TGG + chr1_4:7498164-7498183 Msa0147540:three_prime_UTR 30.0%
! CAAATCATCGTCATCTTTTA+TGG - chr1_4:7498297-7498316 None:intergenic 30.0%
! GTTGCAATTTTCCACCTTAT+GGG + chr1_4:7493869-7493888 Msa0147540:CDS 35.0%
TCTTGTTAACAAGTGCTCTA+AGG + chr1_4:7494307-7494326 Msa0147540:intron 35.0%
CTTGTTAACAAGTGCTCTAA+GGG + chr1_4:7494308-7494327 Msa0147540:intron 35.0%
TTGTTTAAGGAACCCACAAA+AGG + chr1_4:7494333-7494352 Msa0147540:intron 35.0%
!!! AGTCTTTTTTATGGTGGTTG+AGG - chr1_4:7494565-7494584 None:intergenic 35.0%
!!! GTATGCAGTCTTTTTTATGG+TGG - chr1_4:7494571-7494590 None:intergenic 35.0%
GAGTGTAAATACAAAAGGAC+CGG - chr1_4:7494782-7494801 None:intergenic 35.0%
ATGGAATCTTGGGTTTGAAT+TGG - chr1_4:7494952-7494971 None:intergenic 35.0%
TATGGAAATATCAACCAGAC+GGG - chr1_4:7495260-7495279 None:intergenic 35.0%
ATTCGTACTCGTCTCATATA+TGG - chr1_4:7495278-7495297 None:intergenic 35.0%
TGACCACAGTACAAAAAAGT+AGG - chr1_4:7495517-7495536 None:intergenic 35.0%
AGAATTTCTACCAGCATACT+TGG + chr1_4:7495557-7495576 Msa0147540:CDS 35.0%
CAGTCAGCAATATCATTATC+TGG + chr1_4:7495794-7495813 Msa0147540:intron 35.0%
GGAAAATTAAGAGGACTTGT+TGG + chr1_4:7495845-7495864 Msa0147540:CDS 35.0%
AGACAGAACAAACTTCATCT+TGG + chr1_4:7495871-7495890 Msa0147540:CDS 35.0%
! TAGTCTTTTCCTTGTGGTAT+TGG + chr1_4:7495898-7495917 Msa0147540:CDS 35.0%
! AGTCTTTTCCTTGTGGTATT+GGG + chr1_4:7495899-7495918 Msa0147540:CDS 35.0%
TCCTGATTATGCTGATCTTA+TGG + chr1_4:7495982-7496001 Msa0147540:CDS 35.0%
ACCATAAGATCAGCATAATC+AGG - chr1_4:7495986-7496005 None:intergenic 35.0%
GTGAAACCTATATGATTCAG+AGG - chr1_4:7496153-7496172 None:intergenic 35.0%
TCAAGTCTCAACACAAAAAC+TGG + chr1_4:7496279-7496298 Msa0147540:intron 35.0%
CTTTCATTTGTATTGAGAGG+TGG - chr1_4:7496374-7496393 None:intergenic 35.0%
CACCTCTCAATACAAATGAA+AGG + chr1_4:7496372-7496391 Msa0147540:intron 35.0%
AAATATATGAGCTAGGTGCA+AGG + chr1_4:7496395-7496414 Msa0147540:intron 35.0%
TATTCAATGCACCACCAATT+GGG + chr1_4:7496428-7496447 Msa0147540:intron 35.0%
ACAACAGCAAATTGTCAAAG+GGG + chr1_4:7496530-7496549 Msa0147540:CDS 35.0%
ATGTAAACAATCCTGCTGTT+TGG - chr1_4:7496580-7496599 None:intergenic 35.0%
TTACAATGATGTCATGCAGA+GGG - chr1_4:7496615-7496634 None:intergenic 35.0%
TTTACAATGATGTCATGCAG+AGG - chr1_4:7496616-7496635 None:intergenic 35.0%
ACTTGGGTATTTGAACTAGT+CGG + chr1_4:7496687-7496706 Msa0147540:intron 35.0%
GTCTCATTTAGACTTGAATG+AGG - chr1_4:7496794-7496813 None:intergenic 35.0%
! CTGATGCTAATTAATTTGGG+TGG - chr1_4:7496848-7496867 None:intergenic 35.0%
! TTAAGGAGAAGCATACTCTT+AGG + chr1_4:7496887-7496906 Msa0147540:intron 35.0%
GGACATAACTCTGATACTAA+TGG + chr1_4:7497656-7497675 Msa0147540:intron 35.0%
ATGAGTGTTCTTAAGTGTGA+AGG + chr1_4:7497723-7497742 Msa0147540:intron 35.0%
!!! GTCTTTTGGTTCCAACTTTT+AGG - chr1_4:7497756-7497775 None:intergenic 35.0%
! GGTGTAGAATTTGAGTCTTT+TGG - chr1_4:7497770-7497789 None:intergenic 35.0%
TTCTACGTGTCCAAATGATA+TGG + chr1_4:7497981-7498000 Msa0147540:CDS 35.0%
! CTGAAACATTTGGTGGAAGT+TGG - chr1_4:7493774-7493793 None:intergenic 40.0%
ACTGCTGGAACTGAAACATT+TGG - chr1_4:7493784-7493803 None:intergenic 40.0%
! CGTTGCAATTTTCCACCTTA+TGG + chr1_4:7493868-7493887 Msa0147540:CDS 40.0%
TTTAAAGGAGGGATTCCAAC+TGG + chr1_4:7493898-7493917 Msa0147540:CDS 40.0%
CCATTGCTAAATCTTCCAGT+TGG - chr1_4:7493916-7493935 None:intergenic 40.0%
CCAACTGGAAGATTTAGCAA+TGG + chr1_4:7493913-7493932 Msa0147540:CDS 40.0%
AAAGTTCCCTCAGACTTCAT+AGG + chr1_4:7493937-7493956 Msa0147540:CDS 40.0%
GTAGTACCTATGAAGTCTGA+GGG - chr1_4:7493946-7493965 None:intergenic 40.0%
TGTAGTACCTATGAAGTCTG+AGG - chr1_4:7493947-7493966 None:intergenic 40.0%
!! TGCTCTAAGGGCATTGTTTA+AGG + chr1_4:7494320-7494339 Msa0147540:intron 40.0%
TTGAACAGGGTAATCGGTAA+AGG + chr1_4:7495085-7495104 Msa0147540:intron 40.0%
AAACATAGACAGCAGTCATG+TGG - chr1_4:7495327-7495346 None:intergenic 40.0%
ATGACTGCTGTCTATGTTTG+TGG + chr1_4:7495328-7495347 Msa0147540:intron 40.0%
CTGTGGTCAGTTGAAGAATT+AGG + chr1_4:7495528-7495547 Msa0147540:intron 40.0%
AGATTTGGATCCAAGTATGC+TGG - chr1_4:7495570-7495589 None:intergenic 40.0%
ACACCAGTAGGTAAATCACT+GGG - chr1_4:7495597-7495616 None:intergenic 40.0%
TCCTTTGACATCTCAAACTG+CGG + chr1_4:7495647-7495666 Msa0147540:CDS 40.0%
! GGCAAATAGTCTTTTCCTTG+TGG + chr1_4:7495892-7495911 Msa0147540:CDS 40.0%
GCGAGACAAGAAATATGTGT+TGG - chr1_4:7495939-7495958 None:intergenic 40.0%
GTATTCAATGCACCACCAAT+TGG + chr1_4:7496427-7496446 Msa0147540:intron 40.0%
TGAAATGGCAAACACCCAAT+TGG - chr1_4:7496445-7496464 None:intergenic 40.0%
ACCAGAATTATCCAAACAGC+AGG + chr1_4:7496566-7496585 Msa0147540:CDS 40.0%
! TCCTGCTGTTTGGATAATTC+TGG - chr1_4:7496570-7496589 None:intergenic 40.0%
!! AGCTTTTTCTCAAAGGGACA+TGG + chr1_4:7497550-7497569 Msa0147540:intron 40.0%
GTGTTCTTAAGTGTGAAGGT+CGG + chr1_4:7497727-7497746 Msa0147540:intron 40.0%
TTGGACACGTAGAAGACAAA+TGG - chr1_4:7497975-7497994 None:intergenic 40.0%
GCTGGAACTGAAACATTTGG+TGG - chr1_4:7493781-7493800 None:intergenic 45.0%
TGTTTCAGTTCCAGCAGTGT+TGG + chr1_4:7493786-7493805 Msa0147540:CDS 45.0%
GGTGTTTGGAGATTCTATCG+TGG + chr1_4:7493807-7493826 Msa0147540:CDS 45.0%
GGAGATTCTATCGTGGATAC+AGG + chr1_4:7493814-7493833 Msa0147540:CDS 45.0%
TCGGTCTTTCAACCGAATCA+CGG + chr1_4:7494187-7494206 Msa0147540:intron 45.0%
AATATTGCCACCTCACCTCA+AGG + chr1_4:7494750-7494769 Msa0147540:intron 45.0%
CGGATTTAGGGATGACAATG+AGG - chr1_4:7495356-7495375 None:intergenic 45.0%
! AAATCACTGGGCTGGAGATT+TGG - chr1_4:7495585-7495604 None:intergenic 45.0%
CACACCAGTAGGTAAATCAC+TGG - chr1_4:7495598-7495617 None:intergenic 45.0%
GATGCAAAACACACACCAGT+AGG - chr1_4:7495609-7495628 None:intergenic 45.0%
! ACTGGTGTGTGTTTTGCATC+TGG + chr1_4:7495609-7495628 Msa0147540:CDS 45.0%
! ACCGCAGTTTGAGATGTCAA+AGG - chr1_4:7495651-7495670 None:intergenic 45.0%
CATTACTGCCCAATACCACA+AGG - chr1_4:7495910-7495929 None:intergenic 45.0%
TATATGAGCTAGGTGCAAGG+AGG + chr1_4:7496398-7496417 Msa0147540:intron 45.0%
AATGGCAAACACCCAATTGG+TGG - chr1_4:7496442-7496461 None:intergenic 45.0%
!! CTAGTCGGTGTTATTGAGTG+TGG + chr1_4:7496702-7496721 Msa0147540:intron 45.0%
GAAATCCACTTAGGTTAGGC+TGG - chr1_4:7496929-7496948 None:intergenic 45.0%
AAGGTCGGTGACCTAAAAGT+TGG + chr1_4:7497742-7497761 Msa0147540:intron 45.0%
!!! TCTATTTATTATTTTTTTTT+TGG + chr1_4:7495027-7495046 Msa0147540:intron 5.0%
!! AAAAACTAAAATATTTATAA+AGG - chr1_4:7497791-7497810 None:intergenic 5.0%
!! GTTCCAGCAGTGTTGGTGTT+TGG + chr1_4:7493793-7493812 Msa0147540:CDS 50.0%
TCTCCAAACACCAACACTGC+TGG - chr1_4:7493799-7493818 None:intergenic 50.0%
!! CAACCAGACGGGTTGATGAT+GGG - chr1_4:7495249-7495268 None:intergenic 50.0%
!! TCAACCAGACGGGTTGATGA+TGG - chr1_4:7495250-7495269 None:intergenic 50.0%
TCATGTGGTGCATGTCACGT+TGG - chr1_4:7495312-7495331 None:intergenic 50.0%
CAGTAGGTAAATCACTGGGC+TGG - chr1_4:7495593-7495612 None:intergenic 50.0%
CAGCCCAGTGATTTACCTAC+TGG + chr1_4:7495591-7495610 Msa0147540:CDS 50.0%
! GGTGTGTGTTTTGCATCTGG+TGG + chr1_4:7495612-7495631 Msa0147540:CDS 50.0%
!! TGTTTTGCATCTGGTGGTGC+TGG + chr1_4:7495618-7495637 Msa0147540:CDS 50.0%
! CCAGCAGCTGTTCTCTGAAA+TGG - chr1_4:7496460-7496479 None:intergenic 50.0%
CCATTTCAGAGAACAGCTGC+TGG + chr1_4:7496457-7496476 Msa0147540:intron 50.0%
TTTCAGAGAACAGCTGCTGG+AGG + chr1_4:7496460-7496479 Msa0147540:intron 50.0%
TACCACCAGCCTAACCTAAG+TGG + chr1_4:7496921-7496940 Msa0147540:intron 50.0%
ATCCACTTAGGTTAGGCTGG+TGG - chr1_4:7496926-7496945 None:intergenic 50.0%
!! GTGGAAGATAAAGGGTGCTG+TGG + chr1_4:7497916-7497935 Msa0147540:CDS 50.0%
!! AGATAAAGGGTGCTGTGGCA+CGG + chr1_4:7497921-7497940 Msa0147540:CDS 50.0%
!! GCTTTAGCCTTGAGGTGAGG+TGG - chr1_4:7494760-7494779 None:intergenic 55.0%
CCTCACCTCAAGGCTAAAGC+CGG + chr1_4:7494760-7494779 Msa0147540:intron 55.0%
!! AAGGACCGGCTTTAGCCTTG+AGG - chr1_4:7494768-7494787 None:intergenic 55.0%
!! AGACGGGTTGATGATGGGTG+GGG - chr1_4:7495244-7495263 None:intergenic 55.0%
!! CAGACGGGTTGATGATGGGT+GGG - chr1_4:7495245-7495264 None:intergenic 55.0%
GAGCTAGGTGCAAGGAGGAT+TGG + chr1_4:7496403-7496422 Msa0147540:intron 55.0%
!! GATAAAGGGTGCTGTGGCAC+GGG + chr1_4:7497922-7497941 Msa0147540:CDS 55.0%
CTGTGGCACGGGCATAATTG+AGG + chr1_4:7497933-7497952 Msa0147540:CDS 55.0%
!! CCGGCTTTAGCCTTGAGGTG+AGG - chr1_4:7494763-7494782 None:intergenic 60.0%
!! CCAGACGGGTTGATGATGGG+TGG - chr1_4:7495246-7495265 None:intergenic 60.0%
CCACCCATCATCAACCCGTC+TGG + chr1_4:7495243-7495262 Msa0147540:intron 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 7493538 7498389 7493538 ID=Msa0147540;Name=Msa0147540
chr1_4 mRNA 7493538 7498389 7493538 ID=Msa0147540-mRNA-1;Parent=Msa0147540;Name=Msa0147540-mRNA-1;_AED=0.20;_eAED=0.20;_QI=135|0.75|0.6|1|1|1|5|291|332
chr1_4 exon 7493538 7493958 7493538 ID=Msa0147540-mRNA-1:exon:3276;Parent=Msa0147540-mRNA-1
chr1_4 exon 7495538 7495668 7495538 ID=Msa0147540-mRNA-1:exon:3277;Parent=Msa0147540-mRNA-1
chr1_4 exon 7495797 7496003 7495797 ID=Msa0147540-mRNA-1:exon:3278;Parent=Msa0147540-mRNA-1
chr1_4 exon 7496466 7496649 7496466 ID=Msa0147540-mRNA-1:exon:3279;Parent=Msa0147540-mRNA-1
chr1_4 exon 7497908 7498389 7497908 ID=Msa0147540-mRNA-1:exon:3280;Parent=Msa0147540-mRNA-1
chr1_4 five_prime_UTR 7493538 7493672 7493538 ID=Msa0147540-mRNA-1:five_prime_utr;Parent=Msa0147540-mRNA-1
chr1_4 CDS 7493673 7493958 7493673 ID=Msa0147540-mRNA-1:cds;Parent=Msa0147540-mRNA-1
chr1_4 CDS 7495538 7495668 7495538 ID=Msa0147540-mRNA-1:cds;Parent=Msa0147540-mRNA-1
chr1_4 CDS 7495797 7496003 7495797 ID=Msa0147540-mRNA-1:cds;Parent=Msa0147540-mRNA-1
chr1_4 CDS 7496466 7496649 7496466 ID=Msa0147540-mRNA-1:cds;Parent=Msa0147540-mRNA-1
chr1_4 CDS 7497908 7498098 7497908 ID=Msa0147540-mRNA-1:cds;Parent=Msa0147540-mRNA-1
chr1_4 three_prime_UTR 7498099 7498389 7498099 ID=Msa0147540-mRNA-1:three_prime_utr;Parent=Msa0147540-mRNA-1
Gene Sequence

>Msa0147540

ATGCTAGTATATATTATGGTTCCTTTAATGAATTCCCTTTCTTTTTTTCTCCATTTCATAATATTATTACTTGTTGCATGTAAAACAAAGGGTATAGTCCAACTTCCACCAAATGTTTCAGTTCCAGCAGTGTTGGTGTTTGGAGATTCTATCGTGGATACAGGTAACAATAACAACAATTTGAGAACAACAGCTCGTTGCAATTTTCCACCTTATGGGAAAGATTTTAAAGGAGGGATTCCAACTGGAAGATTTAGCAATGGAAAAGTTCCCTCAGACTTCATAGTTGAAGAATTAGGCATTAAAGAATTTCTACCAGCATACTTGGATCCAAATCTCCAGCCCAGTGATTTACCTACTGGTGTGTGTTTTGCATCTGGTGGTGCTGGATTTGATCCTTTGACATCTCAAACTGCGTCAGCAATATCATTATCTGGCCAACTAGATTTGTTCAAAGAATACATAGGAAAATTAAGAGGACTTGTTGGAGAAGACAGAACAAACTTCATCTTGGCAAATAGTCTTTTCCTTGTGGTATTGGGCAGTAATGATATTTCCAACACATATTTCTTGTCTCGCATTAGACAATTCCAGTATGATTTTCCTGATTATGCTGATCTTATGAGAACAGCTGCTGGAGGAATAGAAAGAAGAATTGTAGTTGAATACAATGAAGCAGTAGAATTATACAACAGCAAATTGTCAAAGGGGTTAGCTTCCTTTAACCAGAATTATCCAAACAGCAGGATTGTTTACATTGATGTCTATAACCCTCTGCATGACATCATTGTAAACTCTAATAAATATGGATATAAAGTGGAAGATAAAGGGTGCTGTGGCACGGGCATAATTGAGGTTGTGTTGTTATGCAACCATTTGTCTTCTACGTGTCCAAATGATATGGAGTTTGTCTTTTGGGATAGTTTTCATCCAACTGAAAGTGTTTACAAAAGGCTCATAGCTCCTATTATCCAAAAATACGTCAACGATTTCATGTGA
Protein sequence

>Msa0147540

MLVYIMVPLMNSLSFFLHFIILLLVACKTKGIVQLPPNVSVPAVLVFGDSIVDTGNNNNNLRTTARCNFPPYGKDFKGGIPTGRFSNGKVPSDFIVEELGIKEFLPAYLDPNLQPSDLPTGVCFASGGAGFDPLTSQTASAISLSGQLDLFKEYIGKLRGLVGEDRTNFILANSLFLVVLGSNDISNTYFLSRIRQFQYDFPDYADLMRTAAGGIERRIVVEYNEAVELYNSKLSKGLASFNQNYPNSRIVYIDVYNPLHDIIVNSNKYGYKVEDKGCCGTGIIEVVLLCNHLSSTCPNDMEFVFWDSFHPTESVYKRLIAPIIQKYVNDFM*