AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0533520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0533520 MtrunA17_Chr4g0007031 98.190 221 4 0 1 221 1 221 8.04e-161 443
Msa0533520 MtrunA17_Chr5g0419971 98.190 221 4 0 1 221 1 221 8.04e-161 443
Msa0533520 MtrunA17_Chr5g0419981 98.190 221 4 0 1 221 1 221 8.04e-161 443
Msa0533520 MtrunA17_Chr4g0007051 97.738 221 5 0 1 221 1 221 2.75e-160 441
Msa0533520 MtrunA17_Chr2g0285871 96.380 221 8 0 1 221 1 221 9.09e-159 437
Msa0533520 MtrunA17_Chr4g0007041 96.833 221 7 0 1 221 1 221 1.38e-158 437
Msa0533520 MtrunA17_Chr1g0189841 81.532 222 40 1 1 221 1 222 7.13e-131 367
Msa0533520 MtrunA17_Chr6g0449751 76.577 222 49 3 1 221 1 220 3.29e-118 335
Msa0533520 MtrunA17_Chr6g0449771 77.064 218 48 2 4 221 5 220 3.40e-118 335
Msa0533520 MtrunA17_Chr6g0449731 76.959 217 48 2 4 220 5 219 1.13e-117 334
Msa0533520 MtrunA17_Chr6g0449761 75.115 217 53 1 1 217 1 216 7.01e-116 330
Msa0533520 MtrunA17_Chr6g0449781 63.014 219 78 3 3 221 4 219 2.03e-90 265
Msa0533520 MtrunA17_Chr6g0449791 61.058 208 81 0 1 208 1 208 4.52e-88 258
Msa0533520 MtrunA17_Chr1g0156131 59.447 217 77 3 1 215 1 208 3.17e-81 241
Msa0533520 MtrunA17_Chr2g0292831 60.500 200 69 4 19 215 19 211 5.00e-78 233
Msa0533520 MtrunA17_Chr2g0292901 59.701 201 70 5 19 215 19 212 9.05e-74 222
Msa0533520 MtrunA17_Chr2g0292861 64.162 173 56 4 47 215 7 177 1.10e-71 216
Msa0533520 MtrunA17_Chr2g0292841 63.584 173 57 4 47 215 7 177 9.65e-70 211
Msa0533520 MtrunA17_Chr1g0193671 46.009 213 108 3 5 215 6 213 2.23e-60 188
Msa0533520 MtrunA17_Chr1g0193421 46.000 200 101 3 18 215 20 214 9.67e-54 171
Msa0533520 MtrunA17_Chr7g0271211 47.449 196 96 3 22 215 20 210 3.37e-52 167
Msa0533520 MtrunA17_Chr5g0414971 45.685 197 99 4 22 215 27 218 1.80e-49 160
Msa0533520 MtrunA17_Chr2g0292911 65.833 120 36 3 47 163 7 124 1.89e-47 153
Msa0533520 MtrunA17_Chr1g0210761 41.346 208 90 7 19 215 20 206 1.65e-43 145
Msa0533520 MtrunA17_Chr2g0300561 41.981 212 106 5 4 213 7 203 1.04e-42 143
Msa0533520 MtrunA17_Chr1g0178711 36.652 221 128 5 2 215 5 220 8.77e-42 141
Msa0533520 MtrunA17_Chr2g0300581 38.498 213 114 5 4 214 7 204 5.80e-39 133
Msa0533520 MtrunA17_Chr2g0300591 38.679 212 113 5 4 213 7 203 6.97e-39 133
Msa0533520 MtrunA17_Chr8g0335851 38.532 218 118 5 4 219 11 214 2.91e-36 127
Msa0533520 MtrunA17_Chr8g0343911 40.838 191 104 5 26 214 19 202 7.98e-35 123
Msa0533520 MtrunA17_Chr8g0344021 39.594 197 99 5 1 190 1 184 1.98e-34 122
Msa0533520 MtrunA17_Chr3g0084531 39.378 193 107 5 7 197 3 187 7.09e-33 118
Msa0533520 MtrunA17_Chr8g0343934 38.674 181 98 5 1 179 1 170 1.28e-32 117
Msa0533520 MtrunA17_Chr2g0297231 36.493 211 118 6 1 206 1 200 4.31e-31 113
Msa0533520 MtrunA17_Chr2g0297241 36.493 211 118 6 1 206 1 200 5.18e-31 113
Msa0533520 MtrunA17_Chr2g0313961 36.493 211 118 6 1 206 1 200 1.04e-30 112
Msa0533520 MtrunA17_Chr8g0343954 35.938 192 112 5 26 215 22 204 2.44e-30 111
Msa0533520 MtrunA17_Chr8g0344051 40.223 179 95 4 1 176 1 170 3.08e-30 111
Msa0533520 MtrunA17_Chr8g0343961 33.641 217 129 6 1 215 1 204 1.54e-29 109
Msa0533520 MtrunA17_Chr3g0130241 38.418 177 103 3 5 179 72 244 2.73e-29 110
Msa0533520 MtrunA17_Chr3g0084511 39.655 174 95 5 26 197 21 186 4.97e-29 108
Msa0533520 MtrunA17_Chr3g0084521 36.816 201 108 7 1 197 1 186 7.85e-29 107
Msa0533520 MtrunA17_Chr2g0301611 36.313 179 101 5 1 177 1 168 1.99e-28 106
Msa0533520 MtrunA17_Chr2g0321601 33.641 217 118 7 2 214 7 201 8.63e-28 104
Msa0533520 MtrunA17_Chr2g0302171 36.019 211 119 6 1 206 1 200 1.04e-27 104
Msa0533520 MtrunA17_Chr4g0026191 34.703 219 117 6 1 214 6 203 1.39e-27 104
Msa0533520 MtrunA17_Chr4g0026201 35.784 204 105 6 16 214 21 203 1.85e-27 103
Msa0533520 MtrunA17_Chr2g0321581 41.985 131 70 3 85 214 77 202 2.25e-27 103
Msa0533520 MtrunA17_Chr2g0321591 41.221 131 71 3 85 214 77 202 5.93e-27 102
Msa0533520 MtrunA17_Chr2g0302541 38.172 186 103 5 26 206 22 200 6.72e-27 102
Msa0533520 MtrunA17_Chr5g0411961 33.810 210 125 5 1 206 1 200 9.84e-27 102
Msa0533520 MtrunA17_Chr8g0343921 33.953 215 125 7 1 213 1 200 8.26e-26 99.8
Msa0533520 MtrunA17_Chr8g0344041 34.500 200 118 5 13 206 12 204 2.59e-25 98.6
Msa0533520 MtrunA17_Chr8g0344031 33.180 217 132 6 1 215 1 206 3.26e-25 98.2
Msa0533520 MtrunA17_Chr7g0217811 37.097 186 105 5 26 206 22 200 1.16e-24 96.7
Msa0533520 MtrunA17_Chr4g0003361 36.782 174 102 4 43 215 34 200 1.16e-24 96.7
Msa0533520 MtrunA17_Chr4g0012651 37.097 186 105 5 26 206 22 200 3.47e-24 95.5
Msa0533520 MtrunA17_Chr2g0286171 32.420 219 132 7 1 215 1 207 7.76e-24 94.7
Msa0533520 MtrunA17_Chr3g0115141 35.484 186 104 6 27 206 26 201 2.32e-23 93.2
Msa0533520 MtrunA17_Chr2g0292881 65.517 58 19 1 93 150 1 57 4.29e-20 80.5
Msa0533520 MtrunA17_Chr3g0084551 33.171 205 115 9 1 202 1 186 2.69e-19 82.8
Msa0533520 MtrunA17_Chr3g0084501 37.500 112 61 4 1 110 1 105 8.80e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0533520 AT3G05950.1 65.471 223 69 4 6 221 7 228 9.01e-96 279
Msa0533520 AT5G39150.1 64.220 218 75 2 1 215 1 218 8.15e-95 276
Msa0533520 AT5G39180.1 64.220 218 75 2 1 215 1 218 1.66e-94 275
Msa0533520 AT5G39120.1 64.220 218 75 2 1 215 1 218 3.42e-94 275
Msa0533520 AT5G39160.1 64.840 219 72 3 1 215 1 218 1.28e-92 271
Msa0533520 AT5G39110.1 64.455 211 73 1 7 215 9 219 1.87e-92 270
Msa0533520 AT5G39190.1 64.840 219 72 3 1 215 1 218 1.98e-92 270
Msa0533520 AT5G39130.1 63.470 219 75 3 1 215 1 218 7.19e-92 269
Msa0533520 AT5G39160.3 62.557 219 73 3 1 215 1 214 6.69e-88 259
Msa0533520 AT4G14630.1 60.731 219 82 2 1 215 3 221 1.76e-87 258
Msa0533520 AT3G04200.1 60.465 215 82 3 1 213 6 219 4.60e-84 249
Msa0533520 AT5G39190.2 58.986 217 66 2 1 215 1 196 1.99e-80 239
Msa0533520 AT5G39160.2 58.525 217 67 2 1 215 1 196 6.34e-80 238
Msa0533520 AT5G38910.1 59.545 220 82 4 1 215 1 218 1.40e-78 235
Msa0533520 AT5G38960.1 60.697 201 75 3 18 215 22 221 9.06e-78 233
Msa0533520 AT5G38940.1 60.714 196 74 2 22 215 26 220 1.43e-77 233
Msa0533520 AT5G38940.2 60.714 196 74 2 22 215 50 244 2.27e-77 233
Msa0533520 AT5G38930.1 61.616 198 73 2 20 215 24 220 2.47e-77 232
Msa0533520 AT3G04170.1 55.981 209 86 3 8 214 12 216 7.61e-75 226
Msa0533520 AT3G04190.1 56.219 201 85 2 15 213 19 218 7.38e-74 223
Msa0533520 AT3G04150.1 54.378 217 93 3 3 214 4 219 7.51e-73 221
Msa0533520 AT3G04150.2 51.528 229 94 3 3 214 4 232 4.88e-71 217
Msa0533520 AT3G04180.1 54.726 201 88 2 15 213 19 218 8.86e-71 215
Msa0533520 AT1G02335.1 46.465 198 99 3 20 215 22 214 7.27e-56 177
Msa0533520 AT5G38910.2 48.636 220 69 4 1 215 1 181 4.32e-55 174
Msa0533520 AT3G62020.1 46.009 213 106 5 6 215 8 214 6.65e-55 175
Msa0533520 AT1G09560.1 45.274 201 103 3 17 215 19 214 2.53e-53 171
Msa0533520 AT3G05930.1 46.798 203 99 4 3 202 5 201 2.27e-52 168
Msa0533520 AT1G18970.1 46.000 200 99 4 18 215 25 217 3.80e-51 165
Msa0533520 AT5G26700.1 46.875 192 88 5 26 213 25 206 1.41e-50 164
Msa0533520 AT1G18980.1 45.500 200 100 4 18 215 25 217 6.32e-49 159
Msa0533520 AT3G62020.2 46.667 180 90 3 39 215 9 185 2.10e-47 155
Msa0533520 AT3G10080.1 40.099 202 112 5 18 215 22 218 3.85e-44 147
Msa0533520 AT1G10460.1 41.414 198 108 5 22 214 19 213 3.89e-44 147
Msa0533520 AT3G10080.2 40.099 202 112 5 18 215 93 289 1.87e-43 148
Msa0533520 AT5G20630.1 41.905 210 110 6 1 208 1 200 4.29e-42 142
Msa0533520 AT5G61750.1 41.530 183 102 2 6 186 3 182 7.24e-40 136
Msa0533520 AT1G72610.1 41.053 190 103 6 26 213 19 201 4.08e-34 121
Msa0533520 AT1G74820.1 38.660 194 110 4 24 215 38 224 4.57e-33 119
Msa0533520 AT5G38950.1 54.167 72 33 0 145 216 2 73 1.42e-18 78.2

Find 60 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATATACATACCACCATCTT+TGG 0.255130 4_1:-8534223 None:intergenic
TTTCAACTGAATGTAGGATA+TGG 0.306228 4_1:+8534833 Msa0533520:CDS
CCTTGTTAGCATCTTGGCTT+TGG 0.311083 4_1:+8534134 Msa0533520:CDS
TTGAGATCCTAGTGCATTAG+AGG 0.333822 4_1:-8534564 None:intergenic
CTTATCCACTTGAAAAGCTT+TGG 0.335788 4_1:-8534960 None:intergenic
TAACACGCTTGGTATATCTT+TGG 0.340502 4_1:+8534622 Msa0533520:CDS
TGAAAATGAATAAGACCAAT+TGG 0.356438 4_1:-8534815 None:intergenic
ATACTTCCTTGTTAGCATCT+TGG 0.361887 4_1:+8534128 Msa0533520:CDS
GAGTGCCTTCGAGTACTATA+AGG 0.397511 4_1:-8534709 None:intergenic
TTCTTCAAACATGTTGAAGC+TGG 0.402098 4_1:+8534536 Msa0533520:CDS
ATATACATACCACCATCTTT+GGG 0.405165 4_1:-8534222 None:intergenic
CTCTAGGGTGGATGTGAGGT+GGG 0.411548 4_1:-8534676 None:intergenic
GATGTGTTTGTGTTCCCAAT+TGG 0.424230 4_1:+8534800 Msa0533520:CDS
TAAAGAGCCGGTTGTTGTCT+TGG 0.425026 4_1:-8534757 None:intergenic
GGCAACGCGGTTGCTATCGC+TGG 0.429748 4_1:+8534854 Msa0533520:CDS
CAAAAGTCTTGGAGAGGGCT+AGG 0.434671 4_1:-8534183 None:intergenic
TAATTTGCAGTATTCGTGAA+TGG 0.437869 4_1:+8534473 Msa0533520:intron
ATTATCTTCAAAAGCAGTCT+TGG 0.442184 4_1:+8534993 Msa0533520:CDS
CTCGAAGGCACTCTTTATGT+TGG 0.443268 4_1:+8534719 Msa0533520:CDS
TCTTCAGCTTTAACAAGTGC+GGG 0.444792 4_1:-8534512 None:intergenic
GTCACTGTAGACCAACTATT+CGG 0.446134 4_1:+8534596 Msa0533520:CDS
CATCAAACCAAGACAACAAC+CGG 0.452231 4_1:+8534750 Msa0533520:CDS
ATAAGGATCTCTGTTCCTCT+AGG 0.468428 4_1:-8534692 None:intergenic
TTTGCAACGGTGATAACTCC+TGG 0.470922 4_1:-8534893 None:intergenic
TGATTGCAACACAAAAGTCT+TGG 0.490396 4_1:-8534194 None:intergenic
AATTTGCAGTATTCGTGAAT+GGG 0.491761 4_1:+8534474 Msa0533520:intron
CCTCTAGGGTGGATGTGAGG+TGG 0.496940 4_1:-8534677 None:intergenic
TCTTCAAACATGTTGAAGCT+GGG 0.501315 4_1:+8534537 Msa0533520:CDS
CTATTCGGACTTAACACGCT+TGG 0.510323 4_1:+8534611 Msa0533520:CDS
GAAAATGAATAAGACCAATT+GGG 0.510497 4_1:-8534814 None:intergenic
AGAACTTCGTCGGAAATAAG+AGG 0.511108 4_1:-8534935 None:intergenic
AATAGTTGGTCTACAGTGAC+TGG 0.527501 4_1:-8534593 None:intergenic
AGTACTGAGTTGCAAGATGA+AGG 0.531977 4_1:+8534101 Msa0533520:exon
GCGTGTTAAGTCCGAATAGT+TGG 0.534502 4_1:-8534607 None:intergenic
TGAGGTGGGTTTAAACCCTT+AGG 0.537084 4_1:-8534662 None:intergenic
ATCTTCAGCTTTAACAAGTG+CGG 0.543612 4_1:-8534513 None:intergenic
CTTTACCAAGGTGCTCAACA+AGG 0.544491 4_1:+8534775 Msa0533520:CDS
GCAATCAAAGACCCCAAAGA+TGG 0.554146 4_1:+8534210 Msa0533520:CDS
AGCTTTGGTAAGAACTTCGT+CGG 0.555884 4_1:-8534945 None:intergenic
CCAAAGCCAAGATGCTAACA+AGG 0.556137 4_1:-8534134 None:intergenic
AAAAGTCTTGGAGAGGGCTA+GGG 0.564154 4_1:-8534182 None:intergenic
ATCACCCTTGTTGAGCACCT+TGG 0.567836 4_1:-8534780 None:intergenic
TAAGGATCTCTGTTCCTCTA+GGG 0.571738 4_1:-8534691 None:intergenic
GGACTAAGCAGTCAAAATCC+AGG 0.578792 4_1:+8534875 Msa0533520:CDS
TGAGCACCTTGGTAAAGAGC+CGG 0.579420 4_1:-8534769 None:intergenic
GGGAATGCCTCTAATGCACT+AGG 0.589101 4_1:+8534557 Msa0533520:CDS
GGATCTCTGTTCCTCTAGGG+TGG 0.590427 4_1:-8534688 None:intergenic
TTTAAACAAAGCATTTGCAA+CGG 0.590900 4_1:-8534906 None:intergenic
AGGGCTAGGGTCATAAGCAA+AGG 0.622370 4_1:-8534169 None:intergenic
ATCAAAGACCCCAAAGATGG+TGG 0.628410 4_1:+8534213 Msa0533520:CDS
TATACATACCACCATCTTTG+GGG 0.639620 4_1:-8534221 None:intergenic
CAACACAAAAGTCTTGGAGA+GGG 0.641422 4_1:-8534188 None:intergenic
GTTCCTCTAGGGTGGATGTG+AGG 0.650118 4_1:-8534680 None:intergenic
GCAACACAAAAGTCTTGGAG+AGG 0.651085 4_1:-8534189 None:intergenic
CCACCTCACATCCACCCTAG+AGG 0.660499 4_1:+8534677 Msa0533520:CDS
CTTCAGCTTTAACAAGTGCG+GGG 0.662073 4_1:-8534511 None:intergenic
GAGATCCTTATAGTACTCGA+AGG 0.666965 4_1:+8534704 Msa0533520:CDS
TTTACCAAGGTGCTCAACAA+GGG 0.669433 4_1:+8534776 Msa0533520:CDS
CAACAACCGGCTCTTTACCA+AGG 0.674974 4_1:+8534763 Msa0533520:CDS
GAATGTAGGATATGGCAACG+CGG 0.799195 4_1:+8534841 Msa0533520:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTCAATAAATATATTTTTA+TGG + chr4_1:8534328-8534347 Msa0533520:intron 10.0%
!!! TCTCAATAAATATATTTTTA+TGG + chr4_1:8534328-8534347 Msa0533520:intron 10.0%
!!! TTAATTACTACTCAATTTTT+AGG + chr4_1:8534257-8534276 Msa0533520:intron 15.0%
!! TAAAATGTTTGATATTTGTA+AGG - chr4_1:8534301-8534320 None:intergenic 15.0%
!!! TTAATTACTACTCAATTTTT+AGG + chr4_1:8534257-8534276 Msa0533520:intron 15.0%
!! TAAAATGTTTGATATTTGTA+AGG - chr4_1:8534301-8534320 None:intergenic 15.0%
!!! ATGTATAGAATCTTTTGTTT+TGG + chr4_1:8534364-8534383 Msa0533520:intron 20.0%
!!! ATGTATAGAATCTTTTGTTT+TGG + chr4_1:8534364-8534383 Msa0533520:intron 20.0%
! TGAGTAGTAATTAAGACTTA+AGG - chr4_1:8534251-8534270 None:intergenic 25.0%
! GAAAATGAATAAGACCAATT+GGG - chr4_1:8534817-8534836 None:intergenic 25.0%
! TGAAAATGAATAAGACCAAT+TGG - chr4_1:8534818-8534837 None:intergenic 25.0%
!! ATTCATTTTCAACTGAATGT+AGG + chr4_1:8534827-8534846 Msa0533520:CDS 25.0%
!! TTTAAACAAAGCATTTGCAA+CGG - chr4_1:8534909-8534928 None:intergenic 25.0%
! TGAGTAGTAATTAAGACTTA+AGG - chr4_1:8534251-8534270 None:intergenic 25.0%
! GAAAATGAATAAGACCAATT+GGG - chr4_1:8534817-8534836 None:intergenic 25.0%
! TGAAAATGAATAAGACCAAT+TGG - chr4_1:8534818-8534837 None:intergenic 25.0%
!! ATTCATTTTCAACTGAATGT+AGG + chr4_1:8534827-8534846 Msa0533520:CDS 25.0%
!! TTTAAACAAAGCATTTGCAA+CGG - chr4_1:8534909-8534928 None:intergenic 25.0%
ATATACATACCACCATCTTT+GGG - chr4_1:8534225-8534244 None:intergenic 30.0%
TATATACATACCACCATCTT+TGG - chr4_1:8534226-8534245 None:intergenic 30.0%
! TAATTTGCAGTATTCGTGAA+TGG + chr4_1:8534473-8534492 Msa0533520:intron 30.0%
AATTTGCAGTATTCGTGAAT+GGG + chr4_1:8534474-8534493 Msa0533520:intron 30.0%
TTTCAACTGAATGTAGGATA+TGG + chr4_1:8534833-8534852 Msa0533520:CDS 30.0%
ATTATCTTCAAAAGCAGTCT+TGG + chr4_1:8534993-8535012 Msa0533520:CDS 30.0%
ATATACATACCACCATCTTT+GGG - chr4_1:8534225-8534244 None:intergenic 30.0%
TATATACATACCACCATCTT+TGG - chr4_1:8534226-8534245 None:intergenic 30.0%
! TAATTTGCAGTATTCGTGAA+TGG + chr4_1:8534473-8534492 Msa0533520:intron 30.0%
AATTTGCAGTATTCGTGAAT+GGG + chr4_1:8534474-8534493 Msa0533520:intron 30.0%
TTTCAACTGAATGTAGGATA+TGG + chr4_1:8534833-8534852 Msa0533520:CDS 30.0%
ATTATCTTCAAAAGCAGTCT+TGG + chr4_1:8534993-8535012 Msa0533520:CDS 30.0%
ATACTTCCTTGTTAGCATCT+TGG + chr4_1:8534128-8534147 Msa0533520:CDS 35.0%
TGATTGCAACACAAAAGTCT+TGG - chr4_1:8534197-8534216 None:intergenic 35.0%
TATACATACCACCATCTTTG+GGG - chr4_1:8534224-8534243 None:intergenic 35.0%
! ATCTTCAGCTTTAACAAGTG+CGG - chr4_1:8534516-8534535 None:intergenic 35.0%
TTCTTCAAACATGTTGAAGC+TGG + chr4_1:8534536-8534555 Msa0533520:CDS 35.0%
TCTTCAAACATGTTGAAGCT+GGG + chr4_1:8534537-8534556 Msa0533520:CDS 35.0%
TAACACGCTTGGTATATCTT+TGG + chr4_1:8534622-8534641 Msa0533520:CDS 35.0%
!! TCTTACCAAAGCTTTTCAAG+TGG + chr4_1:8534955-8534974 Msa0533520:CDS 35.0%
CTTATCCACTTGAAAAGCTT+TGG - chr4_1:8534963-8534982 None:intergenic 35.0%
ATACTTCCTTGTTAGCATCT+TGG + chr4_1:8534128-8534147 Msa0533520:CDS 35.0%
TGATTGCAACACAAAAGTCT+TGG - chr4_1:8534197-8534216 None:intergenic 35.0%
TATACATACCACCATCTTTG+GGG - chr4_1:8534224-8534243 None:intergenic 35.0%
! ATCTTCAGCTTTAACAAGTG+CGG - chr4_1:8534516-8534535 None:intergenic 35.0%
TTCTTCAAACATGTTGAAGC+TGG + chr4_1:8534536-8534555 Msa0533520:CDS 35.0%
TCTTCAAACATGTTGAAGCT+GGG + chr4_1:8534537-8534556 Msa0533520:CDS 35.0%
TAACACGCTTGGTATATCTT+TGG + chr4_1:8534622-8534641 Msa0533520:CDS 35.0%
!! TCTTACCAAAGCTTTTCAAG+TGG + chr4_1:8534955-8534974 Msa0533520:CDS 35.0%
CTTATCCACTTGAAAAGCTT+TGG - chr4_1:8534963-8534982 None:intergenic 35.0%
! AGTACTGAGTTGCAAGATGA+AGG + chr4_1:8534101-8534120 Msa0533520:exon 40.0%
CAACACAAAAGTCTTGGAGA+GGG - chr4_1:8534191-8534210 None:intergenic 40.0%
! TCTTCAGCTTTAACAAGTGC+GGG - chr4_1:8534515-8534534 None:intergenic 40.0%
TTGAGATCCTAGTGCATTAG+AGG - chr4_1:8534567-8534586 None:intergenic 40.0%
! AATAGTTGGTCTACAGTGAC+TGG - chr4_1:8534596-8534615 None:intergenic 40.0%
GTCACTGTAGACCAACTATT+CGG + chr4_1:8534596-8534615 Msa0533520:CDS 40.0%
TAAGGATCTCTGTTCCTCTA+GGG - chr4_1:8534694-8534713 None:intergenic 40.0%
ATAAGGATCTCTGTTCCTCT+AGG - chr4_1:8534695-8534714 None:intergenic 40.0%
GAGATCCTTATAGTACTCGA+AGG + chr4_1:8534704-8534723 Msa0533520:CDS 40.0%
CATCAAACCAAGACAACAAC+CGG + chr4_1:8534750-8534769 Msa0533520:CDS 40.0%
! TTTACCAAGGTGCTCAACAA+GGG + chr4_1:8534776-8534795 Msa0533520:CDS 40.0%
GATGTGTTTGTGTTCCCAAT+TGG + chr4_1:8534800-8534819 Msa0533520:CDS 40.0%
AGAACTTCGTCGGAAATAAG+AGG - chr4_1:8534938-8534957 None:intergenic 40.0%
! AGCTTTGGTAAGAACTTCGT+CGG - chr4_1:8534948-8534967 None:intergenic 40.0%
! AGTACTGAGTTGCAAGATGA+AGG + chr4_1:8534101-8534120 Msa0533520:exon 40.0%
CAACACAAAAGTCTTGGAGA+GGG - chr4_1:8534191-8534210 None:intergenic 40.0%
! TCTTCAGCTTTAACAAGTGC+GGG - chr4_1:8534515-8534534 None:intergenic 40.0%
TTGAGATCCTAGTGCATTAG+AGG - chr4_1:8534567-8534586 None:intergenic 40.0%
! AATAGTTGGTCTACAGTGAC+TGG - chr4_1:8534596-8534615 None:intergenic 40.0%
GTCACTGTAGACCAACTATT+CGG + chr4_1:8534596-8534615 Msa0533520:CDS 40.0%
TAAGGATCTCTGTTCCTCTA+GGG - chr4_1:8534694-8534713 None:intergenic 40.0%
ATAAGGATCTCTGTTCCTCT+AGG - chr4_1:8534695-8534714 None:intergenic 40.0%
GAGATCCTTATAGTACTCGA+AGG + chr4_1:8534704-8534723 Msa0533520:CDS 40.0%
CATCAAACCAAGACAACAAC+CGG + chr4_1:8534750-8534769 Msa0533520:CDS 40.0%
! TTTACCAAGGTGCTCAACAA+GGG + chr4_1:8534776-8534795 Msa0533520:CDS 40.0%
GATGTGTTTGTGTTCCCAAT+TGG + chr4_1:8534800-8534819 Msa0533520:CDS 40.0%
AGAACTTCGTCGGAAATAAG+AGG - chr4_1:8534938-8534957 None:intergenic 40.0%
! AGCTTTGGTAAGAACTTCGT+CGG - chr4_1:8534948-8534967 None:intergenic 40.0%
CCAAAGCCAAGATGCTAACA+AGG - chr4_1:8534137-8534156 None:intergenic 45.0%
CCTTGTTAGCATCTTGGCTT+TGG + chr4_1:8534134-8534153 Msa0533520:CDS 45.0%
AAAAGTCTTGGAGAGGGCTA+GGG - chr4_1:8534185-8534204 None:intergenic 45.0%
GCAACACAAAAGTCTTGGAG+AGG - chr4_1:8534192-8534211 None:intergenic 45.0%
GCAATCAAAGACCCCAAAGA+TGG + chr4_1:8534210-8534229 Msa0533520:CDS 45.0%
ATCAAAGACCCCAAAGATGG+TGG + chr4_1:8534213-8534232 Msa0533520:CDS 45.0%
! TTTTGGTCCTCAGTGATTGC+TGG + chr4_1:8534381-8534400 Msa0533520:intron 45.0%
AGCTAAACCAGCAATCACTG+AGG - chr4_1:8534391-8534410 None:intergenic 45.0%
!! CAGTGATTGCTGGTTTAGCT+AGG + chr4_1:8534391-8534410 Msa0533520:intron 45.0%
! CTTCAGCTTTAACAAGTGCG+GGG - chr4_1:8534514-8534533 None:intergenic 45.0%
GCGTGTTAAGTCCGAATAGT+TGG - chr4_1:8534610-8534629 None:intergenic 45.0%
CTATTCGGACTTAACACGCT+TGG + chr4_1:8534611-8534630 Msa0533520:CDS 45.0%
! TGAGGTGGGTTTAAACCCTT+AGG - chr4_1:8534665-8534684 None:intergenic 45.0%
GAGTGCCTTCGAGTACTATA+AGG - chr4_1:8534712-8534731 None:intergenic 45.0%
!! CTCGAAGGCACTCTTTATGT+TGG + chr4_1:8534719-8534738 Msa0533520:CDS 45.0%
TAAAGAGCCGGTTGTTGTCT+TGG - chr4_1:8534760-8534779 None:intergenic 45.0%
! CTTTACCAAGGTGCTCAACA+AGG + chr4_1:8534775-8534794 Msa0533520:CDS 45.0%
GAATGTAGGATATGGCAACG+CGG + chr4_1:8534841-8534860 Msa0533520:CDS 45.0%
GGACTAAGCAGTCAAAATCC+AGG + chr4_1:8534875-8534894 Msa0533520:CDS 45.0%
TTTGCAACGGTGATAACTCC+TGG - chr4_1:8534896-8534915 None:intergenic 45.0%
CCAAAGCCAAGATGCTAACA+AGG - chr4_1:8534137-8534156 None:intergenic 45.0%
CCTTGTTAGCATCTTGGCTT+TGG + chr4_1:8534134-8534153 Msa0533520:CDS 45.0%
AAAAGTCTTGGAGAGGGCTA+GGG - chr4_1:8534185-8534204 None:intergenic 45.0%
GCAACACAAAAGTCTTGGAG+AGG - chr4_1:8534192-8534211 None:intergenic 45.0%
GCAATCAAAGACCCCAAAGA+TGG + chr4_1:8534210-8534229 Msa0533520:CDS 45.0%
ATCAAAGACCCCAAAGATGG+TGG + chr4_1:8534213-8534232 Msa0533520:CDS 45.0%
! TTTTGGTCCTCAGTGATTGC+TGG + chr4_1:8534381-8534400 Msa0533520:intron 45.0%
AGCTAAACCAGCAATCACTG+AGG - chr4_1:8534391-8534410 None:intergenic 45.0%
!! CAGTGATTGCTGGTTTAGCT+AGG + chr4_1:8534391-8534410 Msa0533520:intron 45.0%
! CTTCAGCTTTAACAAGTGCG+GGG - chr4_1:8534514-8534533 None:intergenic 45.0%
GCGTGTTAAGTCCGAATAGT+TGG - chr4_1:8534610-8534629 None:intergenic 45.0%
CTATTCGGACTTAACACGCT+TGG + chr4_1:8534611-8534630 Msa0533520:CDS 45.0%
! TGAGGTGGGTTTAAACCCTT+AGG - chr4_1:8534665-8534684 None:intergenic 45.0%
GAGTGCCTTCGAGTACTATA+AGG - chr4_1:8534712-8534731 None:intergenic 45.0%
!! CTCGAAGGCACTCTTTATGT+TGG + chr4_1:8534719-8534738 Msa0533520:CDS 45.0%
TAAAGAGCCGGTTGTTGTCT+TGG - chr4_1:8534760-8534779 None:intergenic 45.0%
! CTTTACCAAGGTGCTCAACA+AGG + chr4_1:8534775-8534794 Msa0533520:CDS 45.0%
GAATGTAGGATATGGCAACG+CGG + chr4_1:8534841-8534860 Msa0533520:CDS 45.0%
GGACTAAGCAGTCAAAATCC+AGG + chr4_1:8534875-8534894 Msa0533520:CDS 45.0%
TTTGCAACGGTGATAACTCC+TGG - chr4_1:8534896-8534915 None:intergenic 45.0%
AGGGCTAGGGTCATAAGCAA+AGG - chr4_1:8534172-8534191 None:intergenic 50.0%
CAAAAGTCTTGGAGAGGGCT+AGG - chr4_1:8534186-8534205 None:intergenic 50.0%
GGGAATGCCTCTAATGCACT+AGG + chr4_1:8534557-8534576 Msa0533520:CDS 50.0%
!!! TCGCGTTGATTTTGCGCCTA+AGG + chr4_1:8534646-8534665 Msa0533520:CDS 50.0%
!!! CGCGTTGATTTTGCGCCTAA+GGG + chr4_1:8534647-8534666 Msa0533520:CDS 50.0%
! CAACAACCGGCTCTTTACCA+AGG + chr4_1:8534763-8534782 Msa0533520:CDS 50.0%
TGAGCACCTTGGTAAAGAGC+CGG - chr4_1:8534772-8534791 None:intergenic 50.0%
ATCACCCTTGTTGAGCACCT+TGG - chr4_1:8534783-8534802 None:intergenic 50.0%
AGGGCTAGGGTCATAAGCAA+AGG - chr4_1:8534172-8534191 None:intergenic 50.0%
CAAAAGTCTTGGAGAGGGCT+AGG - chr4_1:8534186-8534205 None:intergenic 50.0%
GGGAATGCCTCTAATGCACT+AGG + chr4_1:8534557-8534576 Msa0533520:CDS 50.0%
!!! TCGCGTTGATTTTGCGCCTA+AGG + chr4_1:8534646-8534665 Msa0533520:CDS 50.0%
!!! CGCGTTGATTTTGCGCCTAA+GGG + chr4_1:8534647-8534666 Msa0533520:CDS 50.0%
! CAACAACCGGCTCTTTACCA+AGG + chr4_1:8534763-8534782 Msa0533520:CDS 50.0%
TGAGCACCTTGGTAAAGAGC+CGG - chr4_1:8534772-8534791 None:intergenic 50.0%
ATCACCCTTGTTGAGCACCT+TGG - chr4_1:8534783-8534802 None:intergenic 50.0%
!! CTCTAGGGTGGATGTGAGGT+GGG - chr4_1:8534679-8534698 None:intergenic 55.0%
!! GTTCCTCTAGGGTGGATGTG+AGG - chr4_1:8534683-8534702 None:intergenic 55.0%
! GGATCTCTGTTCCTCTAGGG+TGG - chr4_1:8534691-8534710 None:intergenic 55.0%
!! CTCTAGGGTGGATGTGAGGT+GGG - chr4_1:8534679-8534698 None:intergenic 55.0%
!! GTTCCTCTAGGGTGGATGTG+AGG - chr4_1:8534683-8534702 None:intergenic 55.0%
! GGATCTCTGTTCCTCTAGGG+TGG - chr4_1:8534691-8534710 None:intergenic 55.0%
!! CCTCTAGGGTGGATGTGAGG+TGG - chr4_1:8534680-8534699 None:intergenic 60.0%
CCACCTCACATCCACCCTAG+AGG + chr4_1:8534677-8534696 Msa0533520:CDS 60.0%
!! CCTCTAGGGTGGATGTGAGG+TGG - chr4_1:8534680-8534699 None:intergenic 60.0%
CCACCTCACATCCACCCTAG+AGG + chr4_1:8534677-8534696 Msa0533520:CDS 60.0%
GGCAACGCGGTTGCTATCGC+TGG + chr4_1:8534854-8534873 Msa0533520:CDS 65.0%
GGCAACGCGGTTGCTATCGC+TGG + chr4_1:8534854-8534873 Msa0533520:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 8534091 8535030 8534091 ID=Msa0533520;Name=Msa0533520
chr4_1 mRNA 8534091 8535030 8534091 ID=Msa0533520-mRNA-1;Parent=Msa0533520;Name=Msa0533520-mRNA-1;_AED=0.01;_eAED=0.01;_QI=26|1|0.5|1|1|1|2|0|221
chr4_1 exon 8534091 8534234 8534091 ID=Msa0533520-mRNA-1:exon:2837;Parent=Msa0533520-mRNA-1
chr4_1 exon 8534483 8535030 8534483 ID=Msa0533520-mRNA-1:exon:2838;Parent=Msa0533520-mRNA-1
chr4_1 five_prime_UTR 8534091 8534116 8534091 ID=Msa0533520-mRNA-1:five_prime_utr;Parent=Msa0533520-mRNA-1
chr4_1 CDS 8534117 8534234 8534117 ID=Msa0533520-mRNA-1:cds;Parent=Msa0533520-mRNA-1
chr4_1 CDS 8534483 8535030 8534483 ID=Msa0533520-mRNA-1:cds;Parent=Msa0533520-mRNA-1
Gene Sequence

>Msa0533520

ATGAAGGTTGTATACTTCCTTGTTAGCATCTTGGCTTTGGCATCATCTGTTGCCTTTGCTTATGACCCTAGCCCTCTCCAAGACTTTTGTGTTGCAATCAAAGACCCCAAAGATGGTGTATTCGTGAATGGGAAATTCTGTAAAGACCCCGCACTTGTTAAAGCTGAAGATTTCTTCAAACATGTTGAAGCTGGGAATGCCTCTAATGCACTAGGATCTCAAGTGACTCCAGTCACTGTAGACCAACTATTCGGACTTAACACGCTTGGTATATCTTTGGCTCGCGTTGATTTTGCGCCTAAGGGTTTAAACCCACCTCACATCCACCCTAGAGGAACAGAGATCCTTATAGTACTCGAAGGCACTCTTTATGTTGGATTTGTCTCATCAAACCAAGACAACAACCGGCTCTTTACCAAGGTGCTCAACAAGGGTGATGTGTTTGTGTTCCCAATTGGTCTTATTCATTTTCAACTGAATGTAGGATATGGCAACGCGGTTGCTATCGCTGGACTAAGCAGTCAAAATCCAGGAGTTATCACCGTTGCAAATGCTTTGTTTAAATCTGATCCTCTTATTTCCGACGAAGTTCTTACCAAAGCTTTTCAAGTGGATAAGAGCATAATTGATTATCTTCAAAAGCAGTCTTGGTATGACAACAACTAG

Protein sequence

>Msa0533520

MKVVYFLVSILALASSVAFAYDPSPLQDFCVAIKDPKDGVFVNGKFCKDPALVKAEDFFKHVEAGNASNALGSQVTPVTVDQLFGLNTLGISLARVDFAPKGLNPPHIHPRGTEILIVLEGTLYVGFVSSNQDNNRLFTKVLNKGDVFVFPIGLIHFQLNVGYGNAVAIAGLSSQNPGVITVANALFKSDPLISDEVLTKAFQVDKSIIDYLQKQSWYDNN*