AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0266650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0266650 MtrunA17_Chr4g0007031 98.190 221 4 0 1 221 1 221 8.04e-161 443
Msa0266650 MtrunA17_Chr5g0419971 98.190 221 4 0 1 221 1 221 8.04e-161 443
Msa0266650 MtrunA17_Chr5g0419981 98.190 221 4 0 1 221 1 221 8.04e-161 443
Msa0266650 MtrunA17_Chr4g0007051 97.738 221 5 0 1 221 1 221 2.75e-160 441
Msa0266650 MtrunA17_Chr2g0285871 96.380 221 8 0 1 221 1 221 9.09e-159 437
Msa0266650 MtrunA17_Chr4g0007041 96.833 221 7 0 1 221 1 221 1.38e-158 437
Msa0266650 MtrunA17_Chr1g0189841 81.532 222 40 1 1 221 1 222 7.13e-131 367
Msa0266650 MtrunA17_Chr6g0449751 76.577 222 49 3 1 221 1 220 3.29e-118 335
Msa0266650 MtrunA17_Chr6g0449771 77.064 218 48 2 4 221 5 220 3.40e-118 335
Msa0266650 MtrunA17_Chr6g0449731 76.959 217 48 2 4 220 5 219 1.13e-117 334
Msa0266650 MtrunA17_Chr6g0449761 75.115 217 53 1 1 217 1 216 7.01e-116 330
Msa0266650 MtrunA17_Chr6g0449781 63.014 219 78 3 3 221 4 219 2.03e-90 265
Msa0266650 MtrunA17_Chr6g0449791 61.058 208 81 0 1 208 1 208 4.52e-88 258
Msa0266650 MtrunA17_Chr1g0156131 59.447 217 77 3 1 215 1 208 3.17e-81 241
Msa0266650 MtrunA17_Chr2g0292831 60.500 200 69 4 19 215 19 211 5.00e-78 233
Msa0266650 MtrunA17_Chr2g0292901 59.701 201 70 5 19 215 19 212 9.05e-74 222
Msa0266650 MtrunA17_Chr2g0292861 64.162 173 56 4 47 215 7 177 1.10e-71 216
Msa0266650 MtrunA17_Chr2g0292841 63.584 173 57 4 47 215 7 177 9.65e-70 211
Msa0266650 MtrunA17_Chr1g0193671 46.009 213 108 3 5 215 6 213 2.23e-60 188
Msa0266650 MtrunA17_Chr1g0193421 46.000 200 101 3 18 215 20 214 9.67e-54 171
Msa0266650 MtrunA17_Chr7g0271211 47.449 196 96 3 22 215 20 210 3.37e-52 167
Msa0266650 MtrunA17_Chr5g0414971 45.685 197 99 4 22 215 27 218 1.80e-49 160
Msa0266650 MtrunA17_Chr2g0292911 65.833 120 36 3 47 163 7 124 1.89e-47 153
Msa0266650 MtrunA17_Chr1g0210761 41.346 208 90 7 19 215 20 206 1.65e-43 145
Msa0266650 MtrunA17_Chr2g0300561 41.981 212 106 5 4 213 7 203 1.04e-42 143
Msa0266650 MtrunA17_Chr1g0178711 36.652 221 128 5 2 215 5 220 8.77e-42 141
Msa0266650 MtrunA17_Chr2g0300581 38.498 213 114 5 4 214 7 204 5.80e-39 133
Msa0266650 MtrunA17_Chr2g0300591 38.679 212 113 5 4 213 7 203 6.97e-39 133
Msa0266650 MtrunA17_Chr8g0335851 38.532 218 118 5 4 219 11 214 2.91e-36 127
Msa0266650 MtrunA17_Chr8g0343911 40.838 191 104 5 26 214 19 202 7.98e-35 123
Msa0266650 MtrunA17_Chr8g0344021 39.594 197 99 5 1 190 1 184 1.98e-34 122
Msa0266650 MtrunA17_Chr3g0084531 39.378 193 107 5 7 197 3 187 7.09e-33 118
Msa0266650 MtrunA17_Chr8g0343934 38.674 181 98 5 1 179 1 170 1.28e-32 117
Msa0266650 MtrunA17_Chr2g0297231 36.493 211 118 6 1 206 1 200 4.31e-31 113
Msa0266650 MtrunA17_Chr2g0297241 36.493 211 118 6 1 206 1 200 5.18e-31 113
Msa0266650 MtrunA17_Chr2g0313961 36.493 211 118 6 1 206 1 200 1.04e-30 112
Msa0266650 MtrunA17_Chr8g0343954 35.938 192 112 5 26 215 22 204 2.44e-30 111
Msa0266650 MtrunA17_Chr8g0344051 40.223 179 95 4 1 176 1 170 3.08e-30 111
Msa0266650 MtrunA17_Chr8g0343961 33.641 217 129 6 1 215 1 204 1.54e-29 109
Msa0266650 MtrunA17_Chr3g0130241 38.418 177 103 3 5 179 72 244 2.73e-29 110
Msa0266650 MtrunA17_Chr3g0084511 39.655 174 95 5 26 197 21 186 4.97e-29 108
Msa0266650 MtrunA17_Chr3g0084521 36.816 201 108 7 1 197 1 186 7.85e-29 107
Msa0266650 MtrunA17_Chr2g0301611 36.313 179 101 5 1 177 1 168 1.99e-28 106
Msa0266650 MtrunA17_Chr2g0321601 33.641 217 118 7 2 214 7 201 8.63e-28 104
Msa0266650 MtrunA17_Chr2g0302171 36.019 211 119 6 1 206 1 200 1.04e-27 104
Msa0266650 MtrunA17_Chr4g0026191 34.703 219 117 6 1 214 6 203 1.39e-27 104
Msa0266650 MtrunA17_Chr4g0026201 35.784 204 105 6 16 214 21 203 1.85e-27 103
Msa0266650 MtrunA17_Chr2g0321581 41.985 131 70 3 85 214 77 202 2.25e-27 103
Msa0266650 MtrunA17_Chr2g0321591 41.221 131 71 3 85 214 77 202 5.93e-27 102
Msa0266650 MtrunA17_Chr2g0302541 38.172 186 103 5 26 206 22 200 6.72e-27 102
Msa0266650 MtrunA17_Chr5g0411961 33.810 210 125 5 1 206 1 200 9.84e-27 102
Msa0266650 MtrunA17_Chr8g0343921 33.953 215 125 7 1 213 1 200 8.26e-26 99.8
Msa0266650 MtrunA17_Chr8g0344041 34.500 200 118 5 13 206 12 204 2.59e-25 98.6
Msa0266650 MtrunA17_Chr8g0344031 33.180 217 132 6 1 215 1 206 3.26e-25 98.2
Msa0266650 MtrunA17_Chr7g0217811 37.097 186 105 5 26 206 22 200 1.16e-24 96.7
Msa0266650 MtrunA17_Chr4g0003361 36.782 174 102 4 43 215 34 200 1.16e-24 96.7
Msa0266650 MtrunA17_Chr4g0012651 37.097 186 105 5 26 206 22 200 3.47e-24 95.5
Msa0266650 MtrunA17_Chr2g0286171 32.420 219 132 7 1 215 1 207 7.76e-24 94.7
Msa0266650 MtrunA17_Chr3g0115141 35.484 186 104 6 27 206 26 201 2.32e-23 93.2
Msa0266650 MtrunA17_Chr2g0292881 65.517 58 19 1 93 150 1 57 4.29e-20 80.5
Msa0266650 MtrunA17_Chr3g0084551 33.171 205 115 9 1 202 1 186 2.69e-19 82.8
Msa0266650 MtrunA17_Chr3g0084501 37.500 112 61 4 1 110 1 105 8.80e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0266650 AT3G05950.1 65.471 223 69 4 6 221 7 228 9.01e-96 279
Msa0266650 AT5G39150.1 64.220 218 75 2 1 215 1 218 8.15e-95 276
Msa0266650 AT5G39180.1 64.220 218 75 2 1 215 1 218 1.66e-94 275
Msa0266650 AT5G39120.1 64.220 218 75 2 1 215 1 218 3.42e-94 275
Msa0266650 AT5G39160.1 64.840 219 72 3 1 215 1 218 1.28e-92 271
Msa0266650 AT5G39110.1 64.455 211 73 1 7 215 9 219 1.87e-92 270
Msa0266650 AT5G39190.1 64.840 219 72 3 1 215 1 218 1.98e-92 270
Msa0266650 AT5G39130.1 63.470 219 75 3 1 215 1 218 7.19e-92 269
Msa0266650 AT5G39160.3 62.557 219 73 3 1 215 1 214 6.69e-88 259
Msa0266650 AT4G14630.1 60.731 219 82 2 1 215 3 221 1.76e-87 258
Msa0266650 AT3G04200.1 60.465 215 82 3 1 213 6 219 4.60e-84 249
Msa0266650 AT5G39190.2 58.986 217 66 2 1 215 1 196 1.99e-80 239
Msa0266650 AT5G39160.2 58.525 217 67 2 1 215 1 196 6.34e-80 238
Msa0266650 AT5G38910.1 59.545 220 82 4 1 215 1 218 1.40e-78 235
Msa0266650 AT5G38960.1 60.697 201 75 3 18 215 22 221 9.06e-78 233
Msa0266650 AT5G38940.1 60.714 196 74 2 22 215 26 220 1.43e-77 233
Msa0266650 AT5G38940.2 60.714 196 74 2 22 215 50 244 2.27e-77 233
Msa0266650 AT5G38930.1 61.616 198 73 2 20 215 24 220 2.47e-77 232
Msa0266650 AT3G04170.1 55.981 209 86 3 8 214 12 216 7.61e-75 226
Msa0266650 AT3G04190.1 56.219 201 85 2 15 213 19 218 7.38e-74 223
Msa0266650 AT3G04150.1 54.378 217 93 3 3 214 4 219 7.51e-73 221
Msa0266650 AT3G04150.2 51.528 229 94 3 3 214 4 232 4.88e-71 217
Msa0266650 AT3G04180.1 54.726 201 88 2 15 213 19 218 8.86e-71 215
Msa0266650 AT1G02335.1 46.465 198 99 3 20 215 22 214 7.27e-56 177
Msa0266650 AT5G38910.2 48.636 220 69 4 1 215 1 181 4.32e-55 174
Msa0266650 AT3G62020.1 46.009 213 106 5 6 215 8 214 6.65e-55 175
Msa0266650 AT1G09560.1 45.274 201 103 3 17 215 19 214 2.53e-53 171
Msa0266650 AT3G05930.1 46.798 203 99 4 3 202 5 201 2.27e-52 168
Msa0266650 AT1G18970.1 46.000 200 99 4 18 215 25 217 3.80e-51 165
Msa0266650 AT5G26700.1 46.875 192 88 5 26 213 25 206 1.41e-50 164
Msa0266650 AT1G18980.1 45.500 200 100 4 18 215 25 217 6.32e-49 159
Msa0266650 AT3G62020.2 46.667 180 90 3 39 215 9 185 2.10e-47 155
Msa0266650 AT3G10080.1 40.099 202 112 5 18 215 22 218 3.85e-44 147
Msa0266650 AT1G10460.1 41.414 198 108 5 22 214 19 213 3.89e-44 147
Msa0266650 AT3G10080.2 40.099 202 112 5 18 215 93 289 1.87e-43 148
Msa0266650 AT5G20630.1 41.905 210 110 6 1 208 1 200 4.29e-42 142
Msa0266650 AT5G61750.1 41.530 183 102 2 6 186 3 182 7.24e-40 136
Msa0266650 AT1G72610.1 41.053 190 103 6 26 213 19 201 4.08e-34 121
Msa0266650 AT1G74820.1 38.660 194 110 4 24 215 38 224 4.57e-33 119
Msa0266650 AT5G38950.1 54.167 72 33 0 145 216 2 73 1.42e-18 78.2

Find 60 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATATACATACCACCATCTT+TGG 0.255130 2_2:-67398780 None:intergenic
TTTCAACTGAATGTAGGATA+TGG 0.306228 2_2:+67399390 Msa0266650:CDS
CCTTGTTAGCATCTTGGCTT+TGG 0.311083 2_2:+67398691 Msa0266650:CDS
TTGAGATCCTAGTGCATTAG+AGG 0.333822 2_2:-67399121 None:intergenic
CTTATCCACTTGAAAAGCTT+TGG 0.335788 2_2:-67399517 None:intergenic
TAACACGCTTGGTATATCTT+TGG 0.340502 2_2:+67399179 Msa0266650:CDS
TGAAAATGAATAAGACCAAT+TGG 0.356438 2_2:-67399372 None:intergenic
ATACTTCCTTGTTAGCATCT+TGG 0.361887 2_2:+67398685 Msa0266650:CDS
GAGTGCCTTCGAGTACTATA+AGG 0.397511 2_2:-67399266 None:intergenic
TTCTTCAAACATGTTGAAGC+TGG 0.402098 2_2:+67399093 Msa0266650:CDS
ATATACATACCACCATCTTT+GGG 0.405165 2_2:-67398779 None:intergenic
CTCTAGGGTGGATGTGAGGT+GGG 0.411548 2_2:-67399233 None:intergenic
GATGTGTTTGTGTTCCCAAT+TGG 0.424230 2_2:+67399357 Msa0266650:CDS
TAAAGAGCCGGTTGTTGTCT+TGG 0.425026 2_2:-67399314 None:intergenic
GGCAACGCGGTTGCTATCGC+TGG 0.429748 2_2:+67399411 Msa0266650:CDS
CAAAAGTCTTGGAGAGGGCT+AGG 0.434671 2_2:-67398740 None:intergenic
TAATTTGCAGTATTCGTGAA+TGG 0.437869 2_2:+67399030 Msa0266650:intron
ATTATCTTCAAAAGCAGTCT+TGG 0.442184 2_2:+67399550 Msa0266650:CDS
CTCGAAGGCACTCTTTATGT+TGG 0.443268 2_2:+67399276 Msa0266650:CDS
TCTTCAGCTTTAACAAGTGC+GGG 0.444792 2_2:-67399069 None:intergenic
GTCACTGTAGACCAACTATT+CGG 0.446134 2_2:+67399153 Msa0266650:CDS
CATCAAACCAAGACAACAAC+CGG 0.452231 2_2:+67399307 Msa0266650:CDS
ATAAGGATCTCTGTTCCTCT+AGG 0.468428 2_2:-67399249 None:intergenic
TTTGCAACGGTGATAACTCC+TGG 0.470922 2_2:-67399450 None:intergenic
TGATTGCAACACAAAAGTCT+TGG 0.490396 2_2:-67398751 None:intergenic
AATTTGCAGTATTCGTGAAT+GGG 0.491761 2_2:+67399031 Msa0266650:intron
CCTCTAGGGTGGATGTGAGG+TGG 0.496940 2_2:-67399234 None:intergenic
TCTTCAAACATGTTGAAGCT+GGG 0.501315 2_2:+67399094 Msa0266650:CDS
CTATTCGGACTTAACACGCT+TGG 0.510323 2_2:+67399168 Msa0266650:CDS
GAAAATGAATAAGACCAATT+GGG 0.510497 2_2:-67399371 None:intergenic
AGAACTTCGTCGGAAATAAG+AGG 0.511108 2_2:-67399492 None:intergenic
AATAGTTGGTCTACAGTGAC+TGG 0.527501 2_2:-67399150 None:intergenic
AGTACTGAGTTGCAAGATGA+AGG 0.531977 2_2:+67398658 Msa0266650:exon
GCGTGTTAAGTCCGAATAGT+TGG 0.534502 2_2:-67399164 None:intergenic
TGAGGTGGGTTTAAACCCTT+AGG 0.537084 2_2:-67399219 None:intergenic
ATCTTCAGCTTTAACAAGTG+CGG 0.543612 2_2:-67399070 None:intergenic
CTTTACCAAGGTGCTCAACA+AGG 0.544491 2_2:+67399332 Msa0266650:CDS
GCAATCAAAGACCCCAAAGA+TGG 0.554146 2_2:+67398767 Msa0266650:CDS
AGCTTTGGTAAGAACTTCGT+CGG 0.555884 2_2:-67399502 None:intergenic
CCAAAGCCAAGATGCTAACA+AGG 0.556137 2_2:-67398691 None:intergenic
AAAAGTCTTGGAGAGGGCTA+GGG 0.564154 2_2:-67398739 None:intergenic
ATCACCCTTGTTGAGCACCT+TGG 0.567836 2_2:-67399337 None:intergenic
TAAGGATCTCTGTTCCTCTA+GGG 0.571738 2_2:-67399248 None:intergenic
GGACTAAGCAGTCAAAATCC+AGG 0.578792 2_2:+67399432 Msa0266650:CDS
TGAGCACCTTGGTAAAGAGC+CGG 0.579420 2_2:-67399326 None:intergenic
GGGAATGCCTCTAATGCACT+AGG 0.589101 2_2:+67399114 Msa0266650:CDS
GGATCTCTGTTCCTCTAGGG+TGG 0.590427 2_2:-67399245 None:intergenic
TTTAAACAAAGCATTTGCAA+CGG 0.590900 2_2:-67399463 None:intergenic
AGGGCTAGGGTCATAAGCAA+AGG 0.622370 2_2:-67398726 None:intergenic
ATCAAAGACCCCAAAGATGG+TGG 0.628410 2_2:+67398770 Msa0266650:CDS
TATACATACCACCATCTTTG+GGG 0.639620 2_2:-67398778 None:intergenic
CAACACAAAAGTCTTGGAGA+GGG 0.641422 2_2:-67398745 None:intergenic
GTTCCTCTAGGGTGGATGTG+AGG 0.650118 2_2:-67399237 None:intergenic
GCAACACAAAAGTCTTGGAG+AGG 0.651085 2_2:-67398746 None:intergenic
CCACCTCACATCCACCCTAG+AGG 0.660499 2_2:+67399234 Msa0266650:CDS
CTTCAGCTTTAACAAGTGCG+GGG 0.662073 2_2:-67399068 None:intergenic
GAGATCCTTATAGTACTCGA+AGG 0.666965 2_2:+67399261 Msa0266650:CDS
TTTACCAAGGTGCTCAACAA+GGG 0.669433 2_2:+67399333 Msa0266650:CDS
CAACAACCGGCTCTTTACCA+AGG 0.674974 2_2:+67399320 Msa0266650:CDS
GAATGTAGGATATGGCAACG+CGG 0.799195 2_2:+67399398 Msa0266650:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTCAATAAATATATTTTTA+TGG + chr2_2:67398885-67398904 Msa0266650:intron 10.0%
!!! TCTCAATAAATATATTTTTA+TGG + chr2_2:67398885-67398904 Msa0266650:intron 10.0%
!!! TTAATTACTACTCAATTTTT+AGG + chr2_2:67398814-67398833 Msa0266650:intron 15.0%
!! TAAAATGTTTGATATTTGTA+AGG - chr2_2:67398858-67398877 None:intergenic 15.0%
!!! TTAATTACTACTCAATTTTT+AGG + chr2_2:67398814-67398833 Msa0266650:intron 15.0%
!! TAAAATGTTTGATATTTGTA+AGG - chr2_2:67398858-67398877 None:intergenic 15.0%
!!! ATGTATAGAATCTTTTGTTT+TGG + chr2_2:67398921-67398940 Msa0266650:intron 20.0%
!!! ATGTATAGAATCTTTTGTTT+TGG + chr2_2:67398921-67398940 Msa0266650:intron 20.0%
! TGAGTAGTAATTAAGACTTA+AGG - chr2_2:67398808-67398827 None:intergenic 25.0%
! GAAAATGAATAAGACCAATT+GGG - chr2_2:67399374-67399393 None:intergenic 25.0%
! TGAAAATGAATAAGACCAAT+TGG - chr2_2:67399375-67399394 None:intergenic 25.0%
!! ATTCATTTTCAACTGAATGT+AGG + chr2_2:67399384-67399403 Msa0266650:CDS 25.0%
!! TTTAAACAAAGCATTTGCAA+CGG - chr2_2:67399466-67399485 None:intergenic 25.0%
! TGAGTAGTAATTAAGACTTA+AGG - chr2_2:67398808-67398827 None:intergenic 25.0%
! GAAAATGAATAAGACCAATT+GGG - chr2_2:67399374-67399393 None:intergenic 25.0%
! TGAAAATGAATAAGACCAAT+TGG - chr2_2:67399375-67399394 None:intergenic 25.0%
!! ATTCATTTTCAACTGAATGT+AGG + chr2_2:67399384-67399403 Msa0266650:CDS 25.0%
!! TTTAAACAAAGCATTTGCAA+CGG - chr2_2:67399466-67399485 None:intergenic 25.0%
ATATACATACCACCATCTTT+GGG - chr2_2:67398782-67398801 None:intergenic 30.0%
TATATACATACCACCATCTT+TGG - chr2_2:67398783-67398802 None:intergenic 30.0%
! TAATTTGCAGTATTCGTGAA+TGG + chr2_2:67399030-67399049 Msa0266650:intron 30.0%
AATTTGCAGTATTCGTGAAT+GGG + chr2_2:67399031-67399050 Msa0266650:intron 30.0%
TTTCAACTGAATGTAGGATA+TGG + chr2_2:67399390-67399409 Msa0266650:CDS 30.0%
ATTATCTTCAAAAGCAGTCT+TGG + chr2_2:67399550-67399569 Msa0266650:CDS 30.0%
ATATACATACCACCATCTTT+GGG - chr2_2:67398782-67398801 None:intergenic 30.0%
TATATACATACCACCATCTT+TGG - chr2_2:67398783-67398802 None:intergenic 30.0%
! TAATTTGCAGTATTCGTGAA+TGG + chr2_2:67399030-67399049 Msa0266650:intron 30.0%
AATTTGCAGTATTCGTGAAT+GGG + chr2_2:67399031-67399050 Msa0266650:intron 30.0%
TTTCAACTGAATGTAGGATA+TGG + chr2_2:67399390-67399409 Msa0266650:CDS 30.0%
ATTATCTTCAAAAGCAGTCT+TGG + chr2_2:67399550-67399569 Msa0266650:CDS 30.0%
ATACTTCCTTGTTAGCATCT+TGG + chr2_2:67398685-67398704 Msa0266650:CDS 35.0%
TGATTGCAACACAAAAGTCT+TGG - chr2_2:67398754-67398773 None:intergenic 35.0%
TATACATACCACCATCTTTG+GGG - chr2_2:67398781-67398800 None:intergenic 35.0%
! ATCTTCAGCTTTAACAAGTG+CGG - chr2_2:67399073-67399092 None:intergenic 35.0%
TTCTTCAAACATGTTGAAGC+TGG + chr2_2:67399093-67399112 Msa0266650:CDS 35.0%
TCTTCAAACATGTTGAAGCT+GGG + chr2_2:67399094-67399113 Msa0266650:CDS 35.0%
TAACACGCTTGGTATATCTT+TGG + chr2_2:67399179-67399198 Msa0266650:CDS 35.0%
!! TCTTACCAAAGCTTTTCAAG+TGG + chr2_2:67399512-67399531 Msa0266650:CDS 35.0%
CTTATCCACTTGAAAAGCTT+TGG - chr2_2:67399520-67399539 None:intergenic 35.0%
ATACTTCCTTGTTAGCATCT+TGG + chr2_2:67398685-67398704 Msa0266650:CDS 35.0%
TGATTGCAACACAAAAGTCT+TGG - chr2_2:67398754-67398773 None:intergenic 35.0%
TATACATACCACCATCTTTG+GGG - chr2_2:67398781-67398800 None:intergenic 35.0%
! ATCTTCAGCTTTAACAAGTG+CGG - chr2_2:67399073-67399092 None:intergenic 35.0%
TTCTTCAAACATGTTGAAGC+TGG + chr2_2:67399093-67399112 Msa0266650:CDS 35.0%
TCTTCAAACATGTTGAAGCT+GGG + chr2_2:67399094-67399113 Msa0266650:CDS 35.0%
TAACACGCTTGGTATATCTT+TGG + chr2_2:67399179-67399198 Msa0266650:CDS 35.0%
!! TCTTACCAAAGCTTTTCAAG+TGG + chr2_2:67399512-67399531 Msa0266650:CDS 35.0%
CTTATCCACTTGAAAAGCTT+TGG - chr2_2:67399520-67399539 None:intergenic 35.0%
! AGTACTGAGTTGCAAGATGA+AGG + chr2_2:67398658-67398677 Msa0266650:exon 40.0%
CAACACAAAAGTCTTGGAGA+GGG - chr2_2:67398748-67398767 None:intergenic 40.0%
! TCTTCAGCTTTAACAAGTGC+GGG - chr2_2:67399072-67399091 None:intergenic 40.0%
TTGAGATCCTAGTGCATTAG+AGG - chr2_2:67399124-67399143 None:intergenic 40.0%
! AATAGTTGGTCTACAGTGAC+TGG - chr2_2:67399153-67399172 None:intergenic 40.0%
GTCACTGTAGACCAACTATT+CGG + chr2_2:67399153-67399172 Msa0266650:CDS 40.0%
TAAGGATCTCTGTTCCTCTA+GGG - chr2_2:67399251-67399270 None:intergenic 40.0%
ATAAGGATCTCTGTTCCTCT+AGG - chr2_2:67399252-67399271 None:intergenic 40.0%
GAGATCCTTATAGTACTCGA+AGG + chr2_2:67399261-67399280 Msa0266650:CDS 40.0%
CATCAAACCAAGACAACAAC+CGG + chr2_2:67399307-67399326 Msa0266650:CDS 40.0%
! TTTACCAAGGTGCTCAACAA+GGG + chr2_2:67399333-67399352 Msa0266650:CDS 40.0%
GATGTGTTTGTGTTCCCAAT+TGG + chr2_2:67399357-67399376 Msa0266650:CDS 40.0%
AGAACTTCGTCGGAAATAAG+AGG - chr2_2:67399495-67399514 None:intergenic 40.0%
! AGCTTTGGTAAGAACTTCGT+CGG - chr2_2:67399505-67399524 None:intergenic 40.0%
! AGTACTGAGTTGCAAGATGA+AGG + chr2_2:67398658-67398677 Msa0266650:exon 40.0%
CAACACAAAAGTCTTGGAGA+GGG - chr2_2:67398748-67398767 None:intergenic 40.0%
! TCTTCAGCTTTAACAAGTGC+GGG - chr2_2:67399072-67399091 None:intergenic 40.0%
TTGAGATCCTAGTGCATTAG+AGG - chr2_2:67399124-67399143 None:intergenic 40.0%
! AATAGTTGGTCTACAGTGAC+TGG - chr2_2:67399153-67399172 None:intergenic 40.0%
GTCACTGTAGACCAACTATT+CGG + chr2_2:67399153-67399172 Msa0266650:CDS 40.0%
TAAGGATCTCTGTTCCTCTA+GGG - chr2_2:67399251-67399270 None:intergenic 40.0%
ATAAGGATCTCTGTTCCTCT+AGG - chr2_2:67399252-67399271 None:intergenic 40.0%
GAGATCCTTATAGTACTCGA+AGG + chr2_2:67399261-67399280 Msa0266650:CDS 40.0%
CATCAAACCAAGACAACAAC+CGG + chr2_2:67399307-67399326 Msa0266650:CDS 40.0%
! TTTACCAAGGTGCTCAACAA+GGG + chr2_2:67399333-67399352 Msa0266650:CDS 40.0%
GATGTGTTTGTGTTCCCAAT+TGG + chr2_2:67399357-67399376 Msa0266650:CDS 40.0%
AGAACTTCGTCGGAAATAAG+AGG - chr2_2:67399495-67399514 None:intergenic 40.0%
! AGCTTTGGTAAGAACTTCGT+CGG - chr2_2:67399505-67399524 None:intergenic 40.0%
CCAAAGCCAAGATGCTAACA+AGG - chr2_2:67398694-67398713 None:intergenic 45.0%
CCTTGTTAGCATCTTGGCTT+TGG + chr2_2:67398691-67398710 Msa0266650:CDS 45.0%
AAAAGTCTTGGAGAGGGCTA+GGG - chr2_2:67398742-67398761 None:intergenic 45.0%
GCAACACAAAAGTCTTGGAG+AGG - chr2_2:67398749-67398768 None:intergenic 45.0%
GCAATCAAAGACCCCAAAGA+TGG + chr2_2:67398767-67398786 Msa0266650:CDS 45.0%
ATCAAAGACCCCAAAGATGG+TGG + chr2_2:67398770-67398789 Msa0266650:CDS 45.0%
! TTTTGGTCCTCAGTGATTGC+TGG + chr2_2:67398938-67398957 Msa0266650:intron 45.0%
AGCTAAACCAGCAATCACTG+AGG - chr2_2:67398948-67398967 None:intergenic 45.0%
!! CAGTGATTGCTGGTTTAGCT+AGG + chr2_2:67398948-67398967 Msa0266650:intron 45.0%
! CTTCAGCTTTAACAAGTGCG+GGG - chr2_2:67399071-67399090 None:intergenic 45.0%
GCGTGTTAAGTCCGAATAGT+TGG - chr2_2:67399167-67399186 None:intergenic 45.0%
CTATTCGGACTTAACACGCT+TGG + chr2_2:67399168-67399187 Msa0266650:CDS 45.0%
! TGAGGTGGGTTTAAACCCTT+AGG - chr2_2:67399222-67399241 None:intergenic 45.0%
GAGTGCCTTCGAGTACTATA+AGG - chr2_2:67399269-67399288 None:intergenic 45.0%
!! CTCGAAGGCACTCTTTATGT+TGG + chr2_2:67399276-67399295 Msa0266650:CDS 45.0%
TAAAGAGCCGGTTGTTGTCT+TGG - chr2_2:67399317-67399336 None:intergenic 45.0%
! CTTTACCAAGGTGCTCAACA+AGG + chr2_2:67399332-67399351 Msa0266650:CDS 45.0%
GAATGTAGGATATGGCAACG+CGG + chr2_2:67399398-67399417 Msa0266650:CDS 45.0%
GGACTAAGCAGTCAAAATCC+AGG + chr2_2:67399432-67399451 Msa0266650:CDS 45.0%
TTTGCAACGGTGATAACTCC+TGG - chr2_2:67399453-67399472 None:intergenic 45.0%
CCAAAGCCAAGATGCTAACA+AGG - chr2_2:67398694-67398713 None:intergenic 45.0%
CCTTGTTAGCATCTTGGCTT+TGG + chr2_2:67398691-67398710 Msa0266650:CDS 45.0%
AAAAGTCTTGGAGAGGGCTA+GGG - chr2_2:67398742-67398761 None:intergenic 45.0%
GCAACACAAAAGTCTTGGAG+AGG - chr2_2:67398749-67398768 None:intergenic 45.0%
GCAATCAAAGACCCCAAAGA+TGG + chr2_2:67398767-67398786 Msa0266650:CDS 45.0%
ATCAAAGACCCCAAAGATGG+TGG + chr2_2:67398770-67398789 Msa0266650:CDS 45.0%
! TTTTGGTCCTCAGTGATTGC+TGG + chr2_2:67398938-67398957 Msa0266650:intron 45.0%
AGCTAAACCAGCAATCACTG+AGG - chr2_2:67398948-67398967 None:intergenic 45.0%
!! CAGTGATTGCTGGTTTAGCT+AGG + chr2_2:67398948-67398967 Msa0266650:intron 45.0%
! CTTCAGCTTTAACAAGTGCG+GGG - chr2_2:67399071-67399090 None:intergenic 45.0%
GCGTGTTAAGTCCGAATAGT+TGG - chr2_2:67399167-67399186 None:intergenic 45.0%
CTATTCGGACTTAACACGCT+TGG + chr2_2:67399168-67399187 Msa0266650:CDS 45.0%
! TGAGGTGGGTTTAAACCCTT+AGG - chr2_2:67399222-67399241 None:intergenic 45.0%
GAGTGCCTTCGAGTACTATA+AGG - chr2_2:67399269-67399288 None:intergenic 45.0%
!! CTCGAAGGCACTCTTTATGT+TGG + chr2_2:67399276-67399295 Msa0266650:CDS 45.0%
TAAAGAGCCGGTTGTTGTCT+TGG - chr2_2:67399317-67399336 None:intergenic 45.0%
! CTTTACCAAGGTGCTCAACA+AGG + chr2_2:67399332-67399351 Msa0266650:CDS 45.0%
GAATGTAGGATATGGCAACG+CGG + chr2_2:67399398-67399417 Msa0266650:CDS 45.0%
GGACTAAGCAGTCAAAATCC+AGG + chr2_2:67399432-67399451 Msa0266650:CDS 45.0%
TTTGCAACGGTGATAACTCC+TGG - chr2_2:67399453-67399472 None:intergenic 45.0%
AGGGCTAGGGTCATAAGCAA+AGG - chr2_2:67398729-67398748 None:intergenic 50.0%
CAAAAGTCTTGGAGAGGGCT+AGG - chr2_2:67398743-67398762 None:intergenic 50.0%
GGGAATGCCTCTAATGCACT+AGG + chr2_2:67399114-67399133 Msa0266650:CDS 50.0%
!!! TCGCGTTGATTTTGCGCCTA+AGG + chr2_2:67399203-67399222 Msa0266650:CDS 50.0%
!!! CGCGTTGATTTTGCGCCTAA+GGG + chr2_2:67399204-67399223 Msa0266650:CDS 50.0%
! CAACAACCGGCTCTTTACCA+AGG + chr2_2:67399320-67399339 Msa0266650:CDS 50.0%
TGAGCACCTTGGTAAAGAGC+CGG - chr2_2:67399329-67399348 None:intergenic 50.0%
ATCACCCTTGTTGAGCACCT+TGG - chr2_2:67399340-67399359 None:intergenic 50.0%
AGGGCTAGGGTCATAAGCAA+AGG - chr2_2:67398729-67398748 None:intergenic 50.0%
CAAAAGTCTTGGAGAGGGCT+AGG - chr2_2:67398743-67398762 None:intergenic 50.0%
GGGAATGCCTCTAATGCACT+AGG + chr2_2:67399114-67399133 Msa0266650:CDS 50.0%
!!! TCGCGTTGATTTTGCGCCTA+AGG + chr2_2:67399203-67399222 Msa0266650:CDS 50.0%
!!! CGCGTTGATTTTGCGCCTAA+GGG + chr2_2:67399204-67399223 Msa0266650:CDS 50.0%
! CAACAACCGGCTCTTTACCA+AGG + chr2_2:67399320-67399339 Msa0266650:CDS 50.0%
TGAGCACCTTGGTAAAGAGC+CGG - chr2_2:67399329-67399348 None:intergenic 50.0%
ATCACCCTTGTTGAGCACCT+TGG - chr2_2:67399340-67399359 None:intergenic 50.0%
!! CTCTAGGGTGGATGTGAGGT+GGG - chr2_2:67399236-67399255 None:intergenic 55.0%
!! GTTCCTCTAGGGTGGATGTG+AGG - chr2_2:67399240-67399259 None:intergenic 55.0%
! GGATCTCTGTTCCTCTAGGG+TGG - chr2_2:67399248-67399267 None:intergenic 55.0%
!! CTCTAGGGTGGATGTGAGGT+GGG - chr2_2:67399236-67399255 None:intergenic 55.0%
!! GTTCCTCTAGGGTGGATGTG+AGG - chr2_2:67399240-67399259 None:intergenic 55.0%
! GGATCTCTGTTCCTCTAGGG+TGG - chr2_2:67399248-67399267 None:intergenic 55.0%
!! CCTCTAGGGTGGATGTGAGG+TGG - chr2_2:67399237-67399256 None:intergenic 60.0%
CCACCTCACATCCACCCTAG+AGG + chr2_2:67399234-67399253 Msa0266650:CDS 60.0%
!! CCTCTAGGGTGGATGTGAGG+TGG - chr2_2:67399237-67399256 None:intergenic 60.0%
CCACCTCACATCCACCCTAG+AGG + chr2_2:67399234-67399253 Msa0266650:CDS 60.0%
GGCAACGCGGTTGCTATCGC+TGG + chr2_2:67399411-67399430 Msa0266650:CDS 65.0%
GGCAACGCGGTTGCTATCGC+TGG + chr2_2:67399411-67399430 Msa0266650:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 67398648 67399587 67398648 ID=Msa0266650;Name=Msa0266650
chr2_2 mRNA 67398648 67399587 67398648 ID=Msa0266650-mRNA-1;Parent=Msa0266650;Name=Msa0266650-mRNA-1;_AED=0.01;_eAED=0.01;_QI=26|1|0.5|1|1|1|2|0|221
chr2_2 exon 67398648 67398791 67398648 ID=Msa0266650-mRNA-1:exon:21472;Parent=Msa0266650-mRNA-1
chr2_2 exon 67399040 67399587 67399040 ID=Msa0266650-mRNA-1:exon:21473;Parent=Msa0266650-mRNA-1
chr2_2 five_prime_UTR 67398648 67398673 67398648 ID=Msa0266650-mRNA-1:five_prime_utr;Parent=Msa0266650-mRNA-1
chr2_2 CDS 67398674 67398791 67398674 ID=Msa0266650-mRNA-1:cds;Parent=Msa0266650-mRNA-1
chr2_2 CDS 67399040 67399587 67399040 ID=Msa0266650-mRNA-1:cds;Parent=Msa0266650-mRNA-1
Gene Sequence

>Msa0266650

ATGAAGGTTGTATACTTCCTTGTTAGCATCTTGGCTTTGGCATCATCTGTTGCCTTTGCTTATGACCCTAGCCCTCTCCAAGACTTTTGTGTTGCAATCAAAGACCCCAAAGATGGTGTATTCGTGAATGGGAAATTCTGTAAAGACCCCGCACTTGTTAAAGCTGAAGATTTCTTCAAACATGTTGAAGCTGGGAATGCCTCTAATGCACTAGGATCTCAAGTGACTCCAGTCACTGTAGACCAACTATTCGGACTTAACACGCTTGGTATATCTTTGGCTCGCGTTGATTTTGCGCCTAAGGGTTTAAACCCACCTCACATCCACCCTAGAGGAACAGAGATCCTTATAGTACTCGAAGGCACTCTTTATGTTGGATTTGTCTCATCAAACCAAGACAACAACCGGCTCTTTACCAAGGTGCTCAACAAGGGTGATGTGTTTGTGTTCCCAATTGGTCTTATTCATTTTCAACTGAATGTAGGATATGGCAACGCGGTTGCTATCGCTGGACTAAGCAGTCAAAATCCAGGAGTTATCACCGTTGCAAATGCTTTGTTTAAATCTGATCCTCTTATTTCCGACGAAGTTCTTACCAAAGCTTTTCAAGTGGATAAGAGCATAATTGATTATCTTCAAAAGCAGTCTTGGTATGACAACAACTAG

Protein sequence

>Msa0266650

MKVVYFLVSILALASSVAFAYDPSPLQDFCVAIKDPKDGVFVNGKFCKDPALVKAEDFFKHVEAGNASNALGSQVTPVTVDQLFGLNTLGISLARVDFAPKGLNPPHIHPRGTEILIVLEGTLYVGFVSSNQDNNRLFTKVLNKGDVFVFPIGLIHFQLNVGYGNAVAIAGLSSQNPGVITVANALFKSDPLISDEVLTKAFQVDKSIIDYLQKQSWYDNN*