Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174510 | sp|Q54KM6|KAT_DICDI | 32.870 | 432 | 207 | 10 | 4 | 365 | 15 | 433 | 2.04e-69 | 227 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174510 | A0A2Z6N458 | 83.375 | 403 | 27 | 2 | 1 | 375 | 1 | 391 | 0.0 | 682 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024070 | Msa0174510 | 0.829034 | 6.451395e-55 | -8.615850e-47 |
| Msa0030640 | Msa0174510 | 0.914134 | 2.736645e-84 | -8.615850e-47 |
| Msa0037300 | Msa0174510 | 0.808536 | 2.951336e-50 | -8.615850e-47 |
| Msa0047400 | Msa0174510 | 0.803342 | 3.648623e-49 | -8.615850e-47 |
| Msa0074910 | Msa0174510 | 0.804978 | 1.666328e-49 | -8.615850e-47 |
| Msa0075080 | Msa0174510 | 0.809935 | 1.479415e-50 | -8.615850e-47 |
| Msa0076550 | Msa0174510 | 0.818143 | 2.285900e-52 | -8.615850e-47 |
| Msa0077910 | Msa0174510 | 0.803835 | 2.883498e-49 | -8.615850e-47 |
| Msa0082100 | Msa0174510 | 0.851390 | 9.157406e-61 | -8.615850e-47 |
| Msa0102290 | Msa0174510 | 0.818740 | 1.673840e-52 | -8.615850e-47 |
| Msa0104860 | Msa0174510 | -0.803137 | 4.024252e-49 | -8.615850e-47 |
| Msa0131440 | Msa0174510 | 0.819555 | 1.092206e-52 | -8.615850e-47 |
| Msa0147070 | Msa0174510 | 0.821918 | 3.127626e-53 | -8.615850e-47 |
| Msa0164530 | Msa0174510 | 0.805811 | 1.114878e-49 | -8.615850e-47 |
| Msa0168470 | Msa0174510 | 0.805456 | 1.323054e-49 | -8.615850e-47 |
| Msa0170440 | Msa0174510 | 0.801116 | 1.047743e-48 | -8.615850e-47 |
| Msa0174510 | Msa0178020 | 0.803744 | 3.011495e-49 | -8.615850e-47 |
| Msa0174510 | Msa0181380 | 0.805976 | 1.028939e-49 | -8.615850e-47 |
| Msa0174510 | Msa0182610 | 0.838259 | 3.198995e-57 | -8.615850e-47 |
| Msa0174510 | Msa0183650 | 0.805727 | 1.160825e-49 | -8.615850e-47 |
| Msa0174510 | Msa0237690 | 0.801599 | 8.344831e-49 | -8.615850e-47 |
| Msa0174510 | Msa0269790 | 0.813956 | 1.968916e-51 | -8.615850e-47 |
| Msa0174510 | Msa0284980 | 0.805115 | 1.560125e-49 | -8.615850e-47 |
| Msa0174510 | Msa0288350 | 0.820962 | 5.199177e-53 | -8.615850e-47 |
| Msa0174510 | Msa0294170 | 0.821811 | 3.311173e-53 | -8.615850e-47 |
| Msa0174510 | Msa0311910 | 0.818489 | 1.908671e-52 | -8.615850e-47 |
| Msa0174510 | Msa0313550 | 0.809765 | 1.609723e-50 | -8.615850e-47 |
| Msa0174510 | Msa0371050 | 0.832774 | 7.801316e-56 | -8.615850e-47 |
| Msa0174510 | Msa0379450 | 0.822849 | 1.900406e-53 | -8.615850e-47 |
| Msa0174510 | Msa0383110 | 0.814212 | 1.728632e-51 | -8.615850e-47 |
| Msa0174510 | Msa0386310 | 0.803591 | 3.239930e-49 | -8.615850e-47 |
| Msa0174510 | Msa0399180 | 0.804047 | 2.605086e-49 | -8.615850e-47 |
| Msa0174510 | Msa0404840 | 0.806824 | 6.820029e-50 | -8.615850e-47 |
| Msa0174510 | Msa0415860 | 0.801397 | 9.181545e-49 | -8.615850e-47 |
| Msa0174510 | Msa0419030 | 0.818034 | 2.419424e-52 | -8.615850e-47 |
| Msa0174510 | Msa0436310 | 0.806062 | 9.872467e-50 | -8.615850e-47 |
| Msa0174510 | Msa0436430 | 0.820301 | 7.372168e-53 | -8.615850e-47 |
| Msa0174510 | Msa0438990 | 0.811716 | 6.090748e-51 | -8.615850e-47 |
| Msa0174510 | Msa0439130 | 0.803170 | 3.961218e-49 | -8.615850e-47 |
| Msa0174510 | Msa0475080 | 0.802334 | 5.894741e-49 | -8.615850e-47 |
| Msa0174510 | Msa0480040 | 0.810068 | 1.385276e-50 | -8.615850e-47 |
| Msa0174510 | Msa0485350 | 0.800421 | 1.452601e-48 | -8.615850e-47 |
| Msa0174510 | Msa0503120 | 0.810483 | 1.127283e-50 | -8.615850e-47 |
| Msa0174510 | Msa0504740 | 0.816383 | 5.688808e-52 | -8.615850e-47 |
| Msa0174510 | Msa0506740 | 0.803132 | 4.033967e-49 | -8.615850e-47 |
| Msa0174510 | Msa0510540 | 0.814296 | 1.656425e-51 | -8.615850e-47 |
| Msa0174510 | Msa0515730 | 0.825168 | 5.431140e-54 | -8.615850e-47 |
| Msa0174510 | Msa0521840 | 0.823894 | 1.083044e-53 | -8.615850e-47 |
| Msa0174510 | Msa0524570 | 0.800444 | 1.437144e-48 | -8.615850e-47 |
| Msa0174510 | Msa0527420 | 0.809310 | 2.015682e-50 | -8.615850e-47 |
| Msa0174510 | Msa0552920 | 0.802579 | 5.248053e-49 | -8.615850e-47 |
| Msa0174510 | Msa0556960 | 0.812841 | 3.460734e-51 | -8.615850e-47 |
| Msa0174510 | Msa0583810 | 0.808889 | 2.481187e-50 | -8.615850e-47 |
| Msa0174510 | Msa0624700 | 0.823991 | 1.027893e-53 | -8.615850e-47 |
| Msa0174510 | Msa0639040 | 0.800288 | 1.546378e-48 | -8.615850e-47 |
| Msa0174510 | Msa0649140 | 0.830858 | 2.317702e-55 | -8.615850e-47 |
| Msa0174510 | Msa0695470 | 0.816483 | 5.402528e-52 | -8.615850e-47 |
| Msa0174510 | Msa0749940 | 0.805461 | 1.320229e-49 | -8.615850e-47 |
| Msa0174510 | Msa0752290 | 0.812910 | 3.343078e-51 | -8.615850e-47 |
| Msa0174510 | Msa0762860 | 0.810636 | 1.044622e-50 | -8.615850e-47 |
| Msa0174510 | Msa0762900 | 0.808529 | 2.961023e-50 | -8.615850e-47 |
| Msa0174510 | Msa0772530 | 0.802579 | 5.245912e-49 | -8.615850e-47 |
| Msa0174510 | Msa0773080 | 0.801768 | 7.704547e-49 | -8.615850e-47 |
| Msa0174510 | Msa0788490 | 0.812134 | 4.938641e-51 | -8.615850e-47 |
| Msa0174510 | Msa0842660 | 0.800080 | 1.704730e-48 | -8.615850e-47 |
| Msa0174510 | Msa0862960 | 0.800204 | 1.608017e-48 | -8.615850e-47 |
| Msa0174510 | Msa0879820 | 0.813998 | 1.927029e-51 | -8.615850e-47 |
| Msa0174510 | Msa0887440 | 0.818231 | 2.183968e-52 | -8.615850e-47 |
| Msa0174510 | Msa0934800 | 0.805627 | 1.218659e-49 | -8.615850e-47 |
| Msa0174510 | Msa0967940 | 0.803929 | 2.756836e-49 | -8.615850e-47 |
| Msa0174510 | Msa1013560 | 0.822642 | 2.123213e-53 | -8.615850e-47 |
| Msa0174510 | Msa1033120 | 0.810271 | 1.252469e-50 | -8.615850e-47 |
| Msa0174510 | Msa1035090 | 0.804626 | 1.973710e-49 | -8.615850e-47 |
| Msa0174510 | Msa1052800 | 0.818519 | 1.879180e-52 | -8.615850e-47 |
| Msa0174510 | Msa1061420 | 0.822511 | 2.278307e-53 | -8.615850e-47 |
| Msa0174510 | Msa1074730 | 0.823801 | 1.138784e-53 | -8.615850e-47 |
| Msa0174510 | Msa1110350 | 0.823524 | 1.322226e-53 | -8.615850e-47 |
| Msa0174510 | Msa1134840 | 0.802942 | 4.415440e-49 | -8.615850e-47 |
| Msa0174510 | Msa1149960 | 0.807562 | 4.757974e-50 | -8.615850e-47 |
| Msa0174510 | Msa1154020 | 0.828446 | 8.949028e-55 | -8.615850e-47 |
| Msa0174510 | Msa1162470 | 0.802326 | 5.915455e-49 | -8.615850e-47 |
| Msa0174510 | Msa1177300 | 0.821212 | 4.553456e-53 | -8.615850e-47 |
| Msa0174510 | Msa1190670 | 0.804142 | 2.489975e-49 | -8.615850e-47 |
| Msa0174510 | Msa1206500 | 0.834129 | 3.582489e-56 | -8.615850e-47 |
| Msa0174510 | Msa1208630 | 0.815549 | 8.732471e-52 | -8.615850e-47 |
| Msa0174510 | Msa1223520 | 0.808704 | 2.717392e-50 | -8.615850e-47 |
| Msa0174510 | Msa1244770 | 0.813799 | 2.132102e-51 | -8.615850e-47 |
| Msa0174510 | Msa1244940 | 0.806732 | 7.130454e-50 | -8.615850e-47 |
| Msa0174510 | Msa1250500 | 0.817650 | 2.953943e-52 | -8.615850e-47 |
| Msa0174510 | Msa1267560 | 0.817872 | 2.632619e-52 | -8.615850e-47 |
| Msa0174510 | Msa1269550 | 0.803809 | 2.920369e-49 | -8.615850e-47 |
| Msa0174510 | Msa1272200 | 0.808095 | 3.664029e-50 | -8.615850e-47 |
| Msa0174510 | Msa1297500 | 0.831969 | 1.234525e-55 | -8.615850e-47 |
| Msa0174510 | Msa1297560 | 0.816491 | 5.379836e-52 | -8.615850e-47 |
| Msa0174510 | Msa1298180 | 0.818641 | 1.763109e-52 | -8.615850e-47 |
| Msa0174510 | Msa1312800 | 0.800062 | 1.718898e-48 | -8.615850e-47 |
| Msa0174510 | Msa1317090 | 0.815695 | 8.103047e-52 | -8.615850e-47 |
| Msa0174510 | Msa1325260 | 0.801130 | 1.041130e-48 | -8.615850e-47 |
| Msa0174510 | Msa1349720 | 0.814992 | 1.161518e-51 | -8.615850e-47 |
| Msa0174510 | Msa1375120 | 0.837087 | 6.390658e-57 | -8.615850e-47 |
| Msa0174510 | Msa1375570 | 0.801402 | 9.159381e-49 | -8.615850e-47 |
| Msa0174510 | Msa1376560 | 0.823938 | 1.057819e-53 | -8.615850e-47 |
| Msa0174510 | Msa1379930 | 0.819869 | 9.260728e-53 | -8.615850e-47 |
| Msa0174510 | Msa1398840 | 0.812453 | 4.207699e-51 | -8.615850e-47 |
| Msa0174510 | Msa1411390 | 0.803302 | 3.719306e-49 | -8.615850e-47 |
| Msa0174510 | Msa1411690 | 0.829710 | 4.420192e-55 | -8.615850e-47 |
| Msa0174510 | Msa1412750 | 0.837402 | 5.309316e-57 | -8.615850e-47 |
| Msa0174510 | Msa1419760 | 0.818903 | 1.536985e-52 | -8.615850e-47 |
| Msa0174510 | Msa1426880 | 0.817440 | 3.294056e-52 | -8.615850e-47 |
| Msa0174510 | Msa1429390 | 0.803767 | 2.979252e-49 | -8.615850e-47 |
| Msa0174510 | Msa1439880 | 0.806158 | 9.424521e-50 | -8.615850e-47 |
| Msa0174510 | Msa1444750 | 0.832207 | 1.078484e-55 | -8.615850e-47 |
| Msa0174510 | Msa1455560 | 0.814286 | 1.664137e-51 | -8.615850e-47 |
| Msa0174510 | Msa1460650 | 0.804941 | 1.696061e-49 | -8.615850e-47 |
| Msa0174510 | Msa1462700 | 0.800098 | 1.690130e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174510 | MtrunA17_Chr1g0195061 | 90.323 | 403 | 11 | 1 | 1 | 375 | 1 | 403 | 0.0 | 742 |
| Msa0174510 | MtrunA17_Chr3g0114811 | 37.563 | 394 | 202 | 7 | 4 | 366 | 63 | 443 | 3.25e-86 | 268 |
| Msa0174510 | MtrunA17_Chr3g0114831 | 36.294 | 394 | 207 | 7 | 4 | 366 | 426 | 806 | 2.92e-78 | 256 |
| Msa0174510 | MtrunA17_Chr3g0114831 | 32.370 | 346 | 176 | 6 | 4 | 318 | 10 | 328 | 1.31e-51 | 184 |
| Msa0174510 | MtrunA17_Chr8g0382671 | 30.026 | 383 | 204 | 12 | 30 | 366 | 102 | 466 | 1.64e-35 | 135 |
| Msa0174510 | MtrunA17_Chr7g0267911 | 30.026 | 383 | 204 | 12 | 30 | 366 | 100 | 464 | 1.53e-34 | 132 |
| Msa0174510 | MtrunA17_Chr4g0004131 | 23.529 | 357 | 225 | 10 | 3 | 319 | 5 | 353 | 1.35e-20 | 92.4 |
| Msa0174510 | MtrunA17_Chr8g0360241 | 24.460 | 278 | 160 | 9 | 87 | 319 | 107 | 379 | 7.32e-12 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0174510 | AT1G77670.1 | 38.832 | 394 | 197 | 7 | 4 | 366 | 56 | 436 | 3.45e-89 | 276 |
| Msa0174510 | AT2G22250.1 | 29.124 | 388 | 203 | 11 | 30 | 367 | 55 | 420 | 8.12e-38 | 141 |
| Msa0174510 | AT2G22250.3 | 29.124 | 388 | 203 | 11 | 30 | 367 | 102 | 467 | 1.52e-37 | 141 |
| Msa0174510 | AT2G22250.2 | 29.124 | 388 | 203 | 11 | 30 | 367 | 102 | 467 | 1.52e-37 | 141 |
| Msa0174510 | AT1G80360.3 | 23.876 | 356 | 224 | 10 | 3 | 319 | 5 | 352 | 3.56e-18 | 85.9 |
| Msa0174510 | AT1G80360.2 | 23.876 | 356 | 224 | 10 | 3 | 319 | 5 | 352 | 3.56e-18 | 85.9 |
| Msa0174510 | AT1G80360.4 | 23.876 | 356 | 224 | 10 | 3 | 319 | 5 | 352 | 3.56e-18 | 85.9 |
| Msa0174510 | AT1G80360.1 | 23.876 | 356 | 224 | 10 | 3 | 319 | 5 | 352 | 3.56e-18 | 85.9 |
| Msa0174510 | AT5G36160.1 | 26.286 | 350 | 191 | 15 | 29 | 321 | 44 | 383 | 5.64e-18 | 85.5 |
| Msa0174510 | AT2G24850.1 | 25.688 | 218 | 134 | 10 | 137 | 332 | 196 | 407 | 6.34e-12 | 67.0 |
| Msa0174510 | AT4G28410.1 | 24.104 | 307 | 187 | 13 | 46 | 320 | 116 | 408 | 6.48e-12 | 67.0 |
| Msa0174510 | AT4G28410.2 | 24.116 | 311 | 192 | 13 | 43 | 322 | 113 | 410 | 7.25e-12 | 67.0 |
| Msa0174510 | AT4G23600.2 | 24.155 | 207 | 126 | 8 | 137 | 322 | 77 | 273 | 1.46e-11 | 65.5 |
| Msa0174510 | AT4G23600.1 | 24.155 | 207 | 126 | 8 | 137 | 322 | 181 | 377 | 1.55e-11 | 65.9 |
| Msa0174510 | AT4G23600.3 | 23.902 | 205 | 125 | 8 | 137 | 320 | 181 | 375 | 4.71e-11 | 64.3 |
Find 108 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGCATTTCCTTCACCATTT+TGG | 0.194310 | 1_4:-60180552 | None:intergenic |
| CAAATAGCTACATCCGTTTC+AGG | 0.219246 | 1_4:-60180590 | None:intergenic |
| TGCAGGATTATCAATCAAAA+AGG | 0.231038 | 1_4:+60182769 | Msa0174510:intron |
| TAAATTAAGAGATGAATATT+TGG | 0.232641 | 1_4:+60183469 | Msa0174510:three_prime_UTR |
| AATTAATAAAGTTTGTAATA+TGG | 0.233403 | 1_4:+60183280 | Msa0174510:three_prime_UTR |
| AGTAACTAACTAGTTGTATT+TGG | 0.238878 | 1_4:+60183336 | Msa0174510:three_prime_UTR |
| AAGTATTGCGTCGCTCTTAT+AGG | 0.244782 | 1_4:-60183379 | None:intergenic |
| CATCTTGCACTATATTAAAT+TGG | 0.247467 | 1_4:+60183194 | Msa0174510:exon |
| TAAACCATTGTTAACTTAAC+TGG | 0.258567 | 1_4:+60183506 | Msa0174510:three_prime_UTR |
| CTGTTATAGCCAGGCAATTT+CGG | 0.264498 | 1_4:-60181779 | None:intergenic |
| GATTGTGGTTTAACATTAAC+AGG | 0.268792 | 1_4:+60183408 | Msa0174510:three_prime_UTR |
| ATATCCCTTGCCTCATTTCC+AGG | 0.299458 | 1_4:+60182265 | Msa0174510:CDS |
| ATAGTCCGTTCTTGCATTCC+TGG | 0.309721 | 1_4:-60182283 | None:intergenic |
| ACGTAGAGTACTTGTGTAAC+AGG | 0.310824 | 1_4:+60180199 | None:intergenic |
| GCCGGGGTGGTGGCTGTTCC+AGG | 0.313509 | 1_4:+60183017 | Msa0174510:CDS |
| TTGGTTGAGGTCGGAATTAA+TGG | 0.319771 | 1_4:-60180411 | None:intergenic |
| TAGAAGTTTCATTTGATGAT+AGG | 0.323856 | 1_4:-60183061 | None:intergenic |
| CAATGAAGGATCACTATAAC+TGG | 0.330147 | 1_4:+60183533 | Msa0174510:three_prime_UTR |
| CAAACCTGATGTATCTCTTC+TGG | 0.339394 | 1_4:-60183100 | None:intergenic |
| TGGAGAGGAGCAGGGAAGTC+AGG | 0.351842 | 1_4:-60180365 | None:intergenic |
| TAAATTGGAAGAAAGAATAA+TGG | 0.357716 | 1_4:+60183209 | Msa0174510:exon |
| CTTAGTGATTCAAAGTAGTC+AGG | 0.377117 | 1_4:-60182583 | None:intergenic |
| GGTGGTGGCTGTTCCAGGAC+AGG | 0.388445 | 1_4:+60183022 | Msa0174510:CDS |
| ATGTGAACACTTGGCCAAAA+TGG | 0.390216 | 1_4:+60180538 | Msa0174510:CDS |
| CATTAAGTTGCTTGCGGGAG+TGG | 0.395415 | 1_4:+60182800 | Msa0174510:CDS |
| AAAGAAAGAAAGGAAAAGAA+TGG | 0.401522 | 1_4:+60180238 | Msa0174510:exon |
| ACATCCTTGATATGTTTCAT+AGG | 0.418151 | 1_4:-60180934 | None:intergenic |
| ATTCCGACCTCAACCAATAC+AGG | 0.421253 | 1_4:+60180417 | Msa0174510:CDS |
| AACAGTCCTCACAATCCAAC+TGG | 0.421799 | 1_4:+60181705 | Msa0174510:CDS |
| TATATCATTAAGTTGCTTGC+GGG | 0.423030 | 1_4:+60182795 | Msa0174510:CDS |
| ATTTCGGCTGCAGCATGCTC+CGG | 0.423388 | 1_4:-60181763 | None:intergenic |
| GATAAGGAAGAAAGAAAGAA+AGG | 0.431917 | 1_4:+60180228 | Msa0174510:five_prime_UTR |
| GTCAAAGCAGCTTCCTGAAA+AGG | 0.433261 | 1_4:-60182544 | None:intergenic |
| GACGAACTTGAGACTATTGC+CGG | 0.437073 | 1_4:+60181744 | Msa0174510:CDS |
| CTGCAAGAGCGAGACAACTT+TGG | 0.441179 | 1_4:+60183127 | Msa0174510:CDS |
| ACTTAACTGGTTAACAATGA+AGG | 0.455067 | 1_4:+60183519 | Msa0174510:three_prime_UTR |
| GTCGGAATTAATGGCGGAAA+CGG | 0.459098 | 1_4:-60180402 | None:intergenic |
| CCTTGATATGTTTCATAGGA+AGG | 0.463722 | 1_4:-60180930 | None:intergenic |
| AAATTGGAAGAAAGAATAAT+GGG | 0.466698 | 1_4:+60183210 | Msa0174510:exon |
| AAAGAAAGGAAAAGAATGGA+AGG | 0.476330 | 1_4:+60180242 | Msa0174510:exon |
| TCTAAAACATTTAGTGTCAC+AGG | 0.483989 | 1_4:+60182322 | Msa0174510:CDS |
| AAAAGTTAATACTAGAAGCC+GGG | 0.486367 | 1_4:+60183000 | Msa0174510:CDS |
| GAGTGCACATACATCAGAAA+GGG | 0.496352 | 1_4:-60182889 | None:intergenic |
| AAGGTGAGAGAGTTCTTGAA+TGG | 0.496498 | 1_4:-60180303 | None:intergenic |
| GTGGTGGCTGTTCCAGGACA+GGG | 0.501802 | 1_4:+60183023 | Msa0174510:CDS |
| TTCTTGCATTCCTGGAAATG+AGG | 0.505583 | 1_4:-60182275 | None:intergenic |
| ATGCTGCAGCCGAAATTGCC+TGG | 0.506689 | 1_4:+60181770 | Msa0174510:CDS |
| GCAGCTTCCTGAAAAGGAGC+TGG | 0.508572 | 1_4:-60182538 | None:intergenic |
| ATTAAGTTGCTTGCGGGAGT+GGG | 0.510487 | 1_4:+60182801 | Msa0174510:CDS |
| AAGATACAGTTTATACCTCA+AGG | 0.523616 | 1_4:+60182828 | Msa0174510:CDS |
| GTGTAACAGGGATAGTGATA+AGG | 0.524673 | 1_4:+60180212 | Msa0174510:five_prime_UTR |
| TCTGATAGCAGATGCAATAG+AGG | 0.525077 | 1_4:-60182485 | None:intergenic |
| ATATAGTGCAAGATGCCCTT+CGG | 0.526423 | 1_4:-60183186 | None:intergenic |
| GCAATACTTATGTCTGATTG+TGG | 0.526999 | 1_4:+60183393 | Msa0174510:three_prime_UTR |
| TCAGAAAGGGGACAATCCTC+AGG | 0.527257 | 1_4:-60182876 | None:intergenic |
| AGAGTGCACATACATCAGAA+AGG | 0.530239 | 1_4:-60182890 | None:intergenic |
| TTTAGATATTGACCCTGAAA+CGG | 0.531199 | 1_4:+60180577 | Msa0174510:CDS |
| GTTTCAAACAGCAATTGACC+AGG | 0.534857 | 1_4:+60180884 | Msa0174510:intron |
| CCTTCCTATGAAACATATCA+AGG | 0.534959 | 1_4:+60180930 | Msa0174510:CDS |
| TTAGTGATTCAAAGTAGTCA+GGG | 0.539932 | 1_4:-60182582 | None:intergenic |
| CAAGGATGTGTTACCATGGC+TGG | 0.540558 | 1_4:+60180948 | Msa0174510:CDS |
| GGGACAATCCTCAGGAAGCT+CGG | 0.540948 | 1_4:-60182868 | None:intergenic |
| AATACTAGAAGCCGGGGTGG+TGG | 0.544325 | 1_4:+60183007 | Msa0174510:CDS |
| ATACTTCATCTGTTATAGCC+AGG | 0.547164 | 1_4:-60181788 | None:intergenic |
| CTTGATATGTTTCATAGGAA+GGG | 0.548122 | 1_4:-60180929 | None:intergenic |
| AAATAGCTACATCCGTTTCA+GGG | 0.548601 | 1_4:-60180589 | None:intergenic |
| CGGAGCCGCTATGAAGATTG+AGG | 0.552400 | 1_4:+60183236 | Msa0174510:three_prime_UTR |
| GGAGAGGAGCAGGGAAGTCA+GGG | 0.560494 | 1_4:-60180364 | None:intergenic |
| TACAGGAACACCACCAGCCA+TGG | 0.571149 | 1_4:-60180961 | None:intergenic |
| ATAGCAGATGCAATAGAGGC+TGG | 0.576693 | 1_4:-60182481 | None:intergenic |
| TTATATCATTAAGTTGCTTG+CGG | 0.576813 | 1_4:+60182794 | Msa0174510:CDS |
| CATTTCCAGGAATGCAAGAA+CGG | 0.578124 | 1_4:+60182278 | Msa0174510:CDS |
| AGGTGAGAGAGTTCTTGAAT+GGG | 0.582242 | 1_4:-60180302 | None:intergenic |
| CTTATTTGCCGAGCTTCCTG+AGG | 0.583945 | 1_4:+60182860 | Msa0174510:CDS |
| GAGCGAGACAACTTTGGCTG+CGG | 0.584036 | 1_4:+60183133 | Msa0174510:CDS |
| TTTAGGTTGGAGGATAGGAT+GGG | 0.584717 | 1_4:+60182450 | Msa0174510:intron |
| AAGCTCGGCAAATAAGAAGA+AGG | 0.587876 | 1_4:-60182853 | None:intergenic |
| GCAAGGTATATGTGAACACT+TGG | 0.590383 | 1_4:+60180529 | Msa0174510:CDS |
| CATTCCTGGAAATGAGGCAA+GGG | 0.592523 | 1_4:-60182269 | None:intergenic |
| TGTATTTCAAGGCACGTGCA+AGG | 0.600773 | 1_4:+60180512 | Msa0174510:intron |
| TTAACCAGTTAAGTTAACAA+TGG | 0.600829 | 1_4:-60183510 | None:intergenic |
| ACTACCAGAAGAGATACATC+AGG | 0.602541 | 1_4:+60183096 | Msa0174510:CDS |
| AATGCTATCAACCTCGCTGA+AGG | 0.607180 | 1_4:+60180338 | Msa0174510:CDS |
| GCATTCCTGGAAATGAGGCA+AGG | 0.607455 | 1_4:-60182270 | None:intergenic |
| CGTAGAGTACTTGTGTAACA+GGG | 0.607555 | 1_4:+60180200 | None:intergenic |
| AAAGTTAATACTAGAAGCCG+GGG | 0.622158 | 1_4:+60183001 | Msa0174510:CDS |
| GGAATTAATGGCGGAAACGG+CGG | 0.624454 | 1_4:-60180399 | None:intergenic |
| ACACTTGGCCAAAATGGTGA+AGG | 0.627453 | 1_4:+60180544 | Msa0174510:CDS |
| AGAGTATGACTTCGTCACCC+TGG | 0.631880 | 1_4:-60180902 | None:intergenic |
| AAACCTGTATTGGTTGAGGT+CGG | 0.632186 | 1_4:-60180420 | None:intergenic |
| GAAGAAAGAATAATGGGTGA+CGG | 0.638003 | 1_4:+60183216 | Msa0174510:three_prime_UTR |
| TATTTGTTGTGGTCAAACTG+AGG | 0.648202 | 1_4:+60180607 | Msa0174510:CDS |
| TAGCATTGCATCTCTGAGCA+AGG | 0.649166 | 1_4:-60180322 | None:intergenic |
| AGTGATTCAAAGTAGTCAGG+GGG | 0.650203 | 1_4:-60182580 | None:intergenic |
| TAGTGATTCAAAGTAGTCAG+GGG | 0.658344 | 1_4:-60182581 | None:intergenic |
| GGATGTGTTACCATGGCTGG+TGG | 0.659608 | 1_4:+60180951 | Msa0174510:CDS |
| ACGGATGTAGCTATTTGTTG+TGG | 0.664846 | 1_4:+60180596 | Msa0174510:CDS |
| ATATCAAGGATGTGTTACCA+TGG | 0.670074 | 1_4:+60180944 | Msa0174510:CDS |
| TCCTGGAACAGCCACCACCC+CGG | 0.670992 | 1_4:-60183018 | None:intergenic |
| GTTGAGGTCGGAATTAATGG+CGG | 0.674905 | 1_4:-60180408 | None:intergenic |
| TTTCAAACAGCAATTGACCA+GGG | 0.684472 | 1_4:+60180885 | Msa0174510:intron |
| AGTGCACATACATCAGAAAG+GGG | 0.684588 | 1_4:-60182888 | None:intergenic |
| TGTATCCTCAATCTTCATAG+CGG | 0.692403 | 1_4:-60183241 | None:intergenic |
| AATAAGAAGAAGGAACCTTG+AGG | 0.699594 | 1_4:-60182843 | None:intergenic |
| AAAATGGTGAAGGAAATGCA+TGG | 0.709380 | 1_4:+60180554 | Msa0174510:CDS |
| GTTAATACTAGAAGCCGGGG+TGG | 0.713030 | 1_4:+60183004 | Msa0174510:CDS |
| GTGATTCAAAGTAGTCAGGG+GGG | 0.719527 | 1_4:-60182579 | None:intergenic |
| AGTCAGGGAAGCCTTCAGCG+AGG | 0.769775 | 1_4:-60180349 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTATATTTCTATAGTTT+AGG | + | chr1_4:60181191-60181210 | Msa0174510:intron | 10.0% |
| !!! | TATTATATTTCTATAGTTTA+GGG | + | chr1_4:60181192-60181211 | Msa0174510:intron | 10.0% |
| !! | AATTAATAAAGTTTGTAATA+TGG | + | chr1_4:60183280-60183299 | Msa0174510:three_prime_UTR | 10.0% |
| !! | ATAGATTATATTCTATGAAT+TGG | - | chr1_4:60180484-60180503 | None:intergenic | 15.0% |
| !! | TAAATTAAGAGATGAATATT+TGG | + | chr1_4:60183469-60183488 | Msa0174510:three_prime_UTR | 15.0% |
| !! | TAAACTGATAAACAAAACTT+GGG | - | chr1_4:60181006-60181025 | None:intergenic | 20.0% |
| !! | TTAAACTGATAAACAAAACT+TGG | - | chr1_4:60181007-60181026 | None:intergenic | 20.0% |
| !! | AATAACTTCAACAGTTAAAA+GGG | - | chr1_4:60181322-60181341 | None:intergenic | 20.0% |
| !! | TTCTAACCTATTCAATATAA+TGG | - | chr1_4:60181493-60181512 | None:intergenic | 20.0% |
| !! | CAACAAAATTTATACTAAGT+GGG | - | chr1_4:60181613-60181632 | None:intergenic | 20.0% |
| !! | ACAACAAAATTTATACTAAG+TGG | - | chr1_4:60181614-60181633 | None:intergenic | 20.0% |
| !! | ATTTAAACAGCATATATTCA+TGG | + | chr1_4:60181852-60181871 | Msa0174510:intron | 20.0% |
| !! | AATTAATATTGTGCTTAAAC+TGG | - | chr1_4:60182943-60182962 | None:intergenic | 20.0% |
| !! | TAAATTGGAAGAAAGAATAA+TGG | + | chr1_4:60183209-60183228 | Msa0174510:exon | 20.0% |
| !! | AAATTGGAAGAAAGAATAAT+GGG | + | chr1_4:60183210-60183229 | Msa0174510:exon | 20.0% |
| ! | AAAGAAAGAAAGGAAAAGAA+TGG | + | chr1_4:60180238-60180257 | Msa0174510:exon | 25.0% |
| ! | TATCTACTCTTTGTATTTCA+AGG | + | chr1_4:60180501-60180520 | Msa0174510:intron | 25.0% |
| ! | CTATTATCTTAAATGATTGC+TGG | - | chr1_4:60180728-60180747 | None:intergenic | 25.0% |
| ! | TTTAATGTAAGAACATGTGT+TGG | + | chr1_4:60180754-60180773 | Msa0174510:intron | 25.0% |
| !! | ATAGTTTATGGACTAAATTG+AGG | - | chr1_4:60181073-60181092 | None:intergenic | 25.0% |
| ! | AATAGTCCATAGACTAAATA+AGG | - | chr1_4:60181104-60181123 | None:intergenic | 25.0% |
| ! | TAATCCATTAAATTAGTCCT+CGG | + | chr1_4:60181126-60181145 | Msa0174510:intron | 25.0% |
| ! | TATTGAATAAACCGTCAATT+TGG | - | chr1_4:60181219-60181238 | None:intergenic | 25.0% |
| ! | CAATAACTTCAACAGTTAAA+AGG | - | chr1_4:60181323-60181342 | None:intergenic | 25.0% |
| ! | AGTTAAGTTCACAAAAACAA+GGG | - | chr1_4:60181385-60181404 | None:intergenic | 25.0% |
| !! | ATTGATGTAAGCAATTTTCT+TGG | - | chr1_4:60181453-60181472 | None:intergenic | 25.0% |
| ! | CTAAAGCCATTATATTGAAT+AGG | + | chr1_4:60181484-60181503 | Msa0174510:intron | 25.0% |
| ! | CAGGAAAATATGAAATCTAT+TGG | - | chr1_4:60181536-60181555 | None:intergenic | 25.0% |
| !! | CATCTCTTTCAAATATTTTG+AGG | - | chr1_4:60181641-60181660 | None:intergenic | 25.0% |
| ! | CTCAAAATATTTGAAAGAGA+TGG | + | chr1_4:60181639-60181658 | Msa0174510:intron | 25.0% |
| ! | CATAGATAAATAGAAATTGC+TGG | + | chr1_4:60182049-60182068 | Msa0174510:intron | 25.0% |
| !! | AAAACTTCACTGGAAATTTT+TGG | + | chr1_4:60182369-60182388 | Msa0174510:intron | 25.0% |
| !! | AAACTTCACTGGAAATTTTT+GGG | + | chr1_4:60182370-60182389 | Msa0174510:intron | 25.0% |
| !! | GAGATCAAACATACAATTTT+AGG | + | chr1_4:60182614-60182633 | Msa0174510:intron | 25.0% |
| !!! | TAAACTATTTCTATCTTTGC+AGG | + | chr1_4:60182752-60182771 | Msa0174510:intron | 25.0% |
| !! | TTATATCATTAAGTTGCTTG+CGG | + | chr1_4:60182794-60182813 | Msa0174510:CDS | 25.0% |
| ! | AAAAAGTTAATACTAGAAGC+CGG | + | chr1_4:60182999-60183018 | Msa0174510:CDS | 25.0% |
| !! | TAGAAGTTTCATTTGATGAT+AGG | - | chr1_4:60183064-60183083 | None:intergenic | 25.0% |
| ! | CATCTTGCACTATATTAAAT+TGG | + | chr1_4:60183194-60183213 | Msa0174510:exon | 25.0% |
| ! | AGTAACTAACTAGTTGTATT+TGG | + | chr1_4:60183336-60183355 | Msa0174510:three_prime_UTR | 25.0% |
| ! | TAAACCATTGTTAACTTAAC+TGG | + | chr1_4:60183506-60183525 | Msa0174510:three_prime_UTR | 25.0% |
| ! | TTAACCAGTTAAGTTAACAA+TGG | - | chr1_4:60183513-60183532 | None:intergenic | 25.0% |
| GATAAGGAAGAAAGAAAGAA+AGG | + | chr1_4:60180228-60180247 | Msa0174510:five_prime_UTR | 30.0% | |
| AAAGAAAGGAAAAGAATGGA+AGG | + | chr1_4:60180242-60180261 | Msa0174510:exon | 30.0% | |
| GTGTAAAGAAAAACCTGTAT+TGG | - | chr1_4:60180433-60180452 | None:intergenic | 30.0% | |
| TTTAGATATTGACCCTGAAA+CGG | + | chr1_4:60180577-60180596 | Msa0174510:CDS | 30.0% | |
| !!! | GTGCTTACAAGTTTTTTACA+CGG | + | chr1_4:60180793-60180812 | Msa0174510:intron | 30.0% |
| CTTGATATGTTTCATAGGAA+GGG | - | chr1_4:60180932-60180951 | None:intergenic | 30.0% | |
| ACATCCTTGATATGTTTCAT+AGG | - | chr1_4:60180937-60180956 | None:intergenic | 30.0% | |
| TGATAAACAAAACTTGGGAT+TGG | - | chr1_4:60181001-60181020 | None:intergenic | 30.0% | |
| ! | TTTAAAACTACGAGAGACAA+TGG | + | chr1_4:60181153-60181172 | Msa0174510:intron | 30.0% |
| ACAAGGGTTACATTAGATAA+AGG | - | chr1_4:60181369-60181388 | None:intergenic | 30.0% | |
| CAGTTAAGTTCACAAAAACA+AGG | - | chr1_4:60181386-60181405 | None:intergenic | 30.0% | |
| !!! | CTTGTTTTTGTGAACTTAAC+TGG | + | chr1_4:60181384-60181403 | Msa0174510:intron | 30.0% |
| !! | TATAATGGCTTTAGTTCTCT+CGG | - | chr1_4:60181478-60181497 | None:intergenic | 30.0% |
| ! | TTCCTGTTTCTTTAACTGTT+TGG | + | chr1_4:60181550-60181569 | Msa0174510:intron | 30.0% |
| ATCCAAACAGTTAAAGAAAC+AGG | - | chr1_4:60181555-60181574 | None:intergenic | 30.0% | |
| GTTTCTTTAACTGTTTGGAT+TGG | + | chr1_4:60181555-60181574 | Msa0174510:intron | 30.0% | |
| ! | TTTGTGAAAACTTTTCCAGT+TGG | - | chr1_4:60181723-60181742 | None:intergenic | 30.0% |
| AACAGCATATATTCATGGAA+TGG | + | chr1_4:60181857-60181876 | Msa0174510:intron | 30.0% | |
| TTACAATCAATTGAAGTAGC+AGG | - | chr1_4:60181919-60181938 | None:intergenic | 30.0% | |
| ATGAAAAGAATTACTGTCGT+CGG | - | chr1_4:60182032-60182051 | None:intergenic | 30.0% | |
| !! | GTAATGTTTTTACCTTCTTC+TGG | + | chr1_4:60182193-60182212 | Msa0174510:intron | 30.0% |
| !! | GACACTAAATGTTTTAGACA+AGG | - | chr1_4:60182320-60182339 | None:intergenic | 30.0% |
| ! | TCTAAAACATTTAGTGTCAC+AGG | + | chr1_4:60182322-60182341 | Msa0174510:CDS | 30.0% |
| TAATGCTATTCATCTTAGCA+AGG | - | chr1_4:60182409-60182428 | None:intergenic | 30.0% | |
| TTAGTGATTCAAAGTAGTCA+GGG | - | chr1_4:60182585-60182604 | None:intergenic | 30.0% | |
| TGCAGGATTATCAATCAAAA+AGG | + | chr1_4:60182769-60182788 | Msa0174510:intron | 30.0% | |
| GCAGGATTATCAATCAAAAA+GGG | + | chr1_4:60182770-60182789 | Msa0174510:intron | 30.0% | |
| ! | TATATCATTAAGTTGCTTGC+GGG | + | chr1_4:60182795-60182814 | Msa0174510:CDS | 30.0% |
| AAGATACAGTTTATACCTCA+AGG | + | chr1_4:60182828-60182847 | Msa0174510:CDS | 30.0% | |
| AAAAGTTAATACTAGAAGCC+GGG | + | chr1_4:60183000-60183019 | Msa0174510:CDS | 30.0% | |
| GATTGTGGTTTAACATTAAC+AGG | + | chr1_4:60183408-60183427 | Msa0174510:three_prime_UTR | 30.0% | |
| ACTTAACTGGTTAACAATGA+AGG | + | chr1_4:60183519-60183538 | Msa0174510:three_prime_UTR | 30.0% | |
| !! | AGAAAAACCTGTATTGGTTG+AGG | - | chr1_4:60180427-60180446 | None:intergenic | 35.0% |
| ! | ATGCATTTCCTTCACCATTT+TGG | - | chr1_4:60180555-60180574 | None:intergenic | 35.0% |
| AAAATGGTGAAGGAAATGCA+TGG | + | chr1_4:60180554-60180573 | Msa0174510:CDS | 35.0% | |
| AAATAGCTACATCCGTTTCA+GGG | - | chr1_4:60180592-60180611 | None:intergenic | 35.0% | |
| !! | TATTTGTTGTGGTCAAACTG+AGG | + | chr1_4:60180607-60180626 | Msa0174510:CDS | 35.0% |
| TTTCAAACAGCAATTGACCA+GGG | + | chr1_4:60180885-60180904 | Msa0174510:intron | 35.0% | |
| CCTTGATATGTTTCATAGGA+AGG | - | chr1_4:60180933-60180952 | None:intergenic | 35.0% | |
| CCTTCCTATGAAACATATCA+AGG | + | chr1_4:60180930-60180949 | Msa0174510:CDS | 35.0% | |
| ATATCAAGGATGTGTTACCA+TGG | + | chr1_4:60180944-60180963 | Msa0174510:CDS | 35.0% | |
| TAAACAAAACTTGGGATTGG+TGG | - | chr1_4:60180998-60181017 | None:intergenic | 35.0% | |
| AAGGAGAGAGTGATAGTTTA+TGG | - | chr1_4:60181085-60181104 | None:intergenic | 35.0% | |
| ! | CTCTCTCCTTATTTAGTCTA+TGG | + | chr1_4:60181095-60181114 | Msa0174510:intron | 35.0% |
| TAGTTTAGGGACCAAATTGA+CGG | + | chr1_4:60181205-60181224 | Msa0174510:intron | 35.0% | |
| ! | AAGCAATTTTCTTGGATCCA+AGG | - | chr1_4:60181445-60181464 | None:intergenic | 35.0% |
| ATACTTCATCTGTTATAGCC+AGG | - | chr1_4:60181791-60181810 | None:intergenic | 35.0% | |
| TACGACTGAAAATCTATGAG+TGG | - | chr1_4:60181830-60181849 | None:intergenic | 35.0% | |
| ! | ACTGATTCATGCAAAAACTG+TGG | - | chr1_4:60181985-60182004 | None:intergenic | 35.0% |
| ! | AGCATACAACAGTTTTACTC+TGG | - | chr1_4:60182162-60182181 | None:intergenic | 35.0% |
| ! | AGGCAAGGGATATATGTTTT+TGG | - | chr1_4:60182258-60182277 | None:intergenic | 35.0% |
| TGCATGAAACAAAACTTCAC+TGG | + | chr1_4:60182359-60182378 | Msa0174510:intron | 35.0% | |
| GAATAGCATTAACTCACTGT+TGG | + | chr1_4:60182418-60182437 | Msa0174510:intron | 35.0% | |
| !! | ACTGTTGGTCTGTATCTTTT+AGG | + | chr1_4:60182433-60182452 | Msa0174510:intron | 35.0% |
| !! | TTGGTCTGTATCTTTTAGGT+TGG | + | chr1_4:60182437-60182456 | Msa0174510:intron | 35.0% |
| !!! | TATCTTTTAGGTTGGAGGAT+AGG | + | chr1_4:60182445-60182464 | Msa0174510:intron | 35.0% |
| TAGTGATTCAAAGTAGTCAG+GGG | - | chr1_4:60182584-60182603 | None:intergenic | 35.0% | |
| CTTAGTGATTCAAAGTAGTC+AGG | - | chr1_4:60182586-60182605 | None:intergenic | 35.0% | |
| ACTAAGTTGTTTGTCCAATC+GGG | - | chr1_4:60182703-60182722 | None:intergenic | 35.0% | |
| CACTAAGTTGTTTGTCCAAT+CGG | - | chr1_4:60182704-60182723 | None:intergenic | 35.0% | |
| AATAAGAAGAAGGAACCTTG+AGG | - | chr1_4:60182846-60182865 | None:intergenic | 35.0% | |
| AAAGTTAATACTAGAAGCCG+GGG | + | chr1_4:60183001-60183020 | Msa0174510:CDS | 35.0% | |
| ! | AGAAAAACTGGGTAAGCTTT+TGG | + | chr1_4:60183160-60183179 | Msa0174510:CDS | 35.0% |
| !! | GAAGAAAGAATAATGGGTGA+CGG | + | chr1_4:60183216-60183235 | Msa0174510:three_prime_UTR | 35.0% |
| TGTATCCTCAATCTTCATAG+CGG | - | chr1_4:60183244-60183263 | None:intergenic | 35.0% | |
| ! | GTTTTCACATAGTCTTCTCT+TGG | - | chr1_4:60183315-60183334 | None:intergenic | 35.0% |
| GCAATACTTATGTCTGATTG+TGG | + | chr1_4:60183393-60183412 | Msa0174510:three_prime_UTR | 35.0% | |
| CAATGAAGGATCACTATAAC+TGG | + | chr1_4:60183533-60183552 | Msa0174510:three_prime_UTR | 35.0% | |
| GTGTAACAGGGATAGTGATA+AGG | + | chr1_4:60180212-60180231 | Msa0174510:five_prime_UTR | 40.0% | |
| AGGTGAGAGAGTTCTTGAAT+GGG | - | chr1_4:60180305-60180324 | None:intergenic | 40.0% | |
| AAGGTGAGAGAGTTCTTGAA+TGG | - | chr1_4:60180306-60180325 | None:intergenic | 40.0% | |
| TTGGTTGAGGTCGGAATTAA+TGG | - | chr1_4:60180414-60180433 | None:intergenic | 40.0% | |
| !! | AAACCTGTATTGGTTGAGGT+CGG | - | chr1_4:60180423-60180442 | None:intergenic | 40.0% |
| GCAAGGTATATGTGAACACT+TGG | + | chr1_4:60180529-60180548 | Msa0174510:CDS | 40.0% | |
| ATGTGAACACTTGGCCAAAA+TGG | + | chr1_4:60180538-60180557 | Msa0174510:CDS | 40.0% | |
| CAAATAGCTACATCCGTTTC+AGG | - | chr1_4:60180593-60180612 | None:intergenic | 40.0% | |
| ! | ACGGATGTAGCTATTTGTTG+TGG | + | chr1_4:60180596-60180615 | Msa0174510:CDS | 40.0% |
| CTATGTAGTACCAACACTTC+AGG | - | chr1_4:60180831-60180850 | None:intergenic | 40.0% | |
| GTTTCAAACAGCAATTGACC+AGG | + | chr1_4:60180884-60180903 | Msa0174510:intron | 40.0% | |
| GCAACCGAGGACTAATTTAA+TGG | - | chr1_4:60181133-60181152 | None:intergenic | 40.0% | |
| !!! | TCGTAGTTTTAAAGCAACCG+AGG | - | chr1_4:60181146-60181165 | None:intergenic | 40.0% |
| GAGAGACAATGGTAGTTCAA+GGG | + | chr1_4:60181164-60181183 | Msa0174510:intron | 40.0% | |
| ! | ACTTTTCCAGTTGGATTGTG+AGG | - | chr1_4:60181714-60181733 | None:intergenic | 40.0% |
| CTGTTATAGCCAGGCAATTT+CGG | - | chr1_4:60181782-60181801 | None:intergenic | 40.0% | |
| GTAGCAGGAGAAGATTCATA+TGG | - | chr1_4:60181904-60181923 | None:intergenic | 40.0% | |
| ! | CTGGAGCACATACATGTTTT+AGG | + | chr1_4:60181956-60181975 | Msa0174510:intron | 40.0% |
| TCTTGTGCACAAGCAAATTC+AGG | - | chr1_4:60182114-60182133 | None:intergenic | 40.0% | |
| TTCTTGCATTCCTGGAAATG+AGG | - | chr1_4:60182278-60182297 | None:intergenic | 40.0% | |
| CATTTCCAGGAATGCAAGAA+CGG | + | chr1_4:60182278-60182297 | Msa0174510:CDS | 40.0% | |
| !!! | GTCTGTATCTTTTAGGTTGG+AGG | + | chr1_4:60182440-60182459 | Msa0174510:intron | 40.0% |
| !!! | TTTTAGGTTGGAGGATAGGA+TGG | + | chr1_4:60182449-60182468 | Msa0174510:intron | 40.0% |
| !! | TTTAGGTTGGAGGATAGGAT+GGG | + | chr1_4:60182450-60182469 | Msa0174510:intron | 40.0% |
| TCTGATAGCAGATGCAATAG+AGG | - | chr1_4:60182488-60182507 | None:intergenic | 40.0% | |
| !! | TTTTCAGGAAGCTGCTTTGA+CGG | + | chr1_4:60182546-60182565 | Msa0174510:CDS | 40.0% |
| AGTGATTCAAAGTAGTCAGG+GGG | - | chr1_4:60182583-60182602 | None:intergenic | 40.0% | |
| CTAAGTTGTTTGTCCAATCG+GGG | - | chr1_4:60182702-60182721 | None:intergenic | 40.0% | |
| AAGCTCGGCAAATAAGAAGA+AGG | - | chr1_4:60182856-60182875 | None:intergenic | 40.0% | |
| AGTGCACATACATCAGAAAG+GGG | - | chr1_4:60182891-60182910 | None:intergenic | 40.0% | |
| GAGTGCACATACATCAGAAA+GGG | - | chr1_4:60182892-60182911 | None:intergenic | 40.0% | |
| AGAGTGCACATACATCAGAA+AGG | - | chr1_4:60182893-60182912 | None:intergenic | 40.0% | |
| ACTACCAGAAGAGATACATC+AGG | + | chr1_4:60183096-60183115 | Msa0174510:CDS | 40.0% | |
| CAAACCTGATGTATCTCTTC+TGG | - | chr1_4:60183103-60183122 | None:intergenic | 40.0% | |
| ! | GTAAGCTTTTGGATTCCGAA+GGG | + | chr1_4:60183171-60183190 | Msa0174510:CDS | 40.0% |
| ATATAGTGCAAGATGCCCTT+CGG | - | chr1_4:60183189-60183208 | None:intergenic | 40.0% | |
| ! | AAGTATTGCGTCGCTCTTAT+AGG | - | chr1_4:60183382-60183401 | None:intergenic | 40.0% |
| TAGCATTGCATCTCTGAGCA+AGG | - | chr1_4:60180325-60180344 | None:intergenic | 45.0% | |
| AATGCTATCAACCTCGCTGA+AGG | + | chr1_4:60180338-60180357 | Msa0174510:CDS | 45.0% | |
| ! | TTTTGATGTGGAGAGGAGCA+GGG | - | chr1_4:60180376-60180395 | None:intergenic | 45.0% |
| ! | TTTTTGATGTGGAGAGGAGC+AGG | - | chr1_4:60180377-60180396 | None:intergenic | 45.0% |
| ! | AAACGGCGGCATTTTTGATG+TGG | - | chr1_4:60180388-60180407 | None:intergenic | 45.0% |
| ! | GTCGGAATTAATGGCGGAAA+CGG | - | chr1_4:60180405-60180424 | None:intergenic | 45.0% |
| GTTGAGGTCGGAATTAATGG+CGG | - | chr1_4:60180411-60180430 | None:intergenic | 45.0% | |
| ATTCCGACCTCAACCAATAC+AGG | + | chr1_4:60180417-60180436 | Msa0174510:CDS | 45.0% | |
| TGTATTTCAAGGCACGTGCA+AGG | + | chr1_4:60180512-60180531 | Msa0174510:intron | 45.0% | |
| ACACTTGGCCAAAATGGTGA+AGG | + | chr1_4:60180544-60180563 | Msa0174510:CDS | 45.0% | |
| ACGTCTTCAACCTGAAGTGT+TGG | + | chr1_4:60180818-60180837 | Msa0174510:intron | 45.0% | |
| CGAGAGACAATGGTAGTTCA+AGG | + | chr1_4:60181163-60181182 | Msa0174510:intron | 45.0% | |
| AGGGTCATTGGATTGTACAC+AGG | - | chr1_4:60181286-60181305 | None:intergenic | 45.0% | |
| AAAGGGACAGCAAACATGCA+GGG | - | chr1_4:60181305-60181324 | None:intergenic | 45.0% | |
| AAAAGGGACAGCAAACATGC+AGG | - | chr1_4:60181306-60181325 | None:intergenic | 45.0% | |
| AACAGTCCTCACAATCCAAC+TGG | + | chr1_4:60181705-60181724 | Msa0174510:CDS | 45.0% | |
| GACGAACTTGAGACTATTGC+CGG | + | chr1_4:60181744-60181763 | Msa0174510:CDS | 45.0% | |
| TTGTAATGTGAGTGCCCTTG+AGG | + | chr1_4:60181933-60181952 | Msa0174510:intron | 45.0% | |
| TGCACAAAGAGTCCAGAAGA+AGG | - | chr1_4:60182208-60182227 | None:intergenic | 45.0% | |
| TTCTTCTGGACTCTTTGTGC+AGG | + | chr1_4:60182207-60182226 | Msa0174510:intron | 45.0% | |
| ATATCCCTTGCCTCATTTCC+AGG | + | chr1_4:60182265-60182284 | Msa0174510:CDS | 45.0% | |
| CATTCCTGGAAATGAGGCAA+GGG | - | chr1_4:60182272-60182291 | None:intergenic | 45.0% | |
| ATAGTCCGTTCTTGCATTCC+TGG | - | chr1_4:60182286-60182305 | None:intergenic | 45.0% | |
| ATAGCAGATGCAATAGAGGC+TGG | - | chr1_4:60182484-60182503 | None:intergenic | 45.0% | |
| GTCAAAGCAGCTTCCTGAAA+AGG | - | chr1_4:60182547-60182566 | None:intergenic | 45.0% | |
| GTGATTCAAAGTAGTCAGGG+GGG | - | chr1_4:60182582-60182601 | None:intergenic | 45.0% | |
| TACTTGTGTTAGACCCCGAT+TGG | + | chr1_4:60182686-60182705 | Msa0174510:intron | 45.0% | |
| ! | ATTAAGTTGCTTGCGGGAGT+GGG | + | chr1_4:60182801-60182820 | Msa0174510:CDS | 45.0% |
| GTGTGAAAAAATCCCTGTCC+TGG | - | chr1_4:60183038-60183057 | None:intergenic | 45.0% | |
| GCTGCGGTTTCAGAAAAACT+GGG | + | chr1_4:60183149-60183168 | Msa0174510:CDS | 45.0% | |
| ! | GGTAAGCTTTTGGATTCCGA+AGG | + | chr1_4:60183170-60183189 | Msa0174510:CDS | 45.0% |
| ! | GCGGCATTTTTGATGTGGAG+AGG | - | chr1_4:60180383-60180402 | None:intergenic | 50.0% |
| ! | GGAATTAATGGCGGAAACGG+CGG | - | chr1_4:60180402-60180421 | None:intergenic | 50.0% |
| AGAGTATGACTTCGTCACCC+TGG | - | chr1_4:60180905-60180924 | None:intergenic | 50.0% | |
| CAAGGATGTGTTACCATGGC+TGG | + | chr1_4:60180948-60180967 | Msa0174510:CDS | 50.0% | |
| TGGTGGCAATGCAAGCTTAC+AGG | - | chr1_4:60180981-60181000 | None:intergenic | 50.0% | |
| CAGCAAACATGCAGGGTCAT+TGG | - | chr1_4:60181298-60181317 | None:intergenic | 50.0% | |
| CTTGGATCCAAGGTCCACTT+AGG | - | chr1_4:60181435-60181454 | None:intergenic | 50.0% | |
| TGTATGTGCTCCAGCCTCAA+GGG | - | chr1_4:60181950-60181969 | None:intergenic | 50.0% | |
| ATGTATGTGCTCCAGCCTCA+AGG | - | chr1_4:60181951-60181970 | None:intergenic | 50.0% | |
| GCATTCCTGGAAATGAGGCA+AGG | - | chr1_4:60182273-60182292 | None:intergenic | 50.0% | |
| ! | TTCTGCTCCAGCTCCTTTTC+AGG | + | chr1_4:60182531-60182550 | Msa0174510:CDS | 50.0% |
| ! | CATTAAGTTGCTTGCGGGAG+TGG | + | chr1_4:60182800-60182819 | Msa0174510:CDS | 50.0% |
| CTTATTTGCCGAGCTTCCTG+AGG | + | chr1_4:60182860-60182879 | Msa0174510:CDS | 50.0% | |
| TCAGAAAGGGGACAATCCTC+AGG | - | chr1_4:60182879-60182898 | None:intergenic | 50.0% | |
| GTTAATACTAGAAGCCGGGG+TGG | + | chr1_4:60183004-60183023 | Msa0174510:CDS | 50.0% | |
| CTGCAAGAGCGAGACAACTT+TGG | + | chr1_4:60183127-60183146 | Msa0174510:CDS | 50.0% | |
| GGCTGCGGTTTCAGAAAAAC+TGG | + | chr1_4:60183148-60183167 | Msa0174510:CDS | 50.0% | |
| GGATGTGTTACCATGGCTGG+TGG | + | chr1_4:60180951-60180970 | Msa0174510:CDS | 55.0% | |
| TACAGGAACACCACCAGCCA+TGG | - | chr1_4:60180964-60180983 | None:intergenic | 55.0% | |
| GTCCACTTAGGCAGGTCAAG+CGG | - | chr1_4:60181423-60181442 | None:intergenic | 55.0% | |
| TGACCTGCCTAAGTGGACCT+TGG | + | chr1_4:60181425-60181444 | Msa0174510:intron | 55.0% | |
| GATCCAAGGTCCACTTAGGC+AGG | - | chr1_4:60181431-60181450 | None:intergenic | 55.0% | |
| ATTTCGGCTGCAGCATGCTC+CGG | - | chr1_4:60181766-60181785 | None:intergenic | 55.0% | |
| ATGCTGCAGCCGAAATTGCC+TGG | + | chr1_4:60181770-60181789 | Msa0174510:CDS | 55.0% | |
| AATGTGAGTGCCCTTGAGGC+TGG | + | chr1_4:60181937-60181956 | Msa0174510:intron | 55.0% | |
| GCAGCTTCCTGAAAAGGAGC+TGG | - | chr1_4:60182541-60182560 | None:intergenic | 55.0% | |
| GGGACAATCCTCAGGAAGCT+CGG | - | chr1_4:60182871-60182890 | None:intergenic | 55.0% | |
| AATACTAGAAGCCGGGGTGG+TGG | + | chr1_4:60183007-60183026 | Msa0174510:CDS | 55.0% | |
| GAGCGAGACAACTTTGGCTG+CGG | + | chr1_4:60183133-60183152 | Msa0174510:CDS | 55.0% | |
| CGGAGCCGCTATGAAGATTG+AGG | + | chr1_4:60183236-60183255 | Msa0174510:three_prime_UTR | 55.0% | |
| AGTCAGGGAAGCCTTCAGCG+AGG | - | chr1_4:60180352-60180371 | None:intergenic | 60.0% | |
| GGAGAGGAGCAGGGAAGTCA+GGG | - | chr1_4:60180367-60180386 | None:intergenic | 60.0% | |
| TGGAGAGGAGCAGGGAAGTC+AGG | - | chr1_4:60180368-60180387 | None:intergenic | 60.0% | |
| ! | TGCCGCTTGACCTGCCTAAG+TGG | + | chr1_4:60181418-60181437 | Msa0174510:intron | 60.0% |
| GTGGTGGCTGTTCCAGGACA+GGG | + | chr1_4:60183023-60183042 | Msa0174510:CDS | 60.0% | |
| TCCTGGAACAGCCACCACCC+CGG | - | chr1_4:60183021-60183040 | None:intergenic | 65.0% | |
| ! | GGTGGTGGCTGTTCCAGGAC+AGG | + | chr1_4:60183022-60183041 | Msa0174510:CDS | 65.0% |
| ! | GCCGGGGTGGTGGCTGTTCC+AGG | + | chr1_4:60183017-60183036 | Msa0174510:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 60180203 | 60183562 | 60180203 | ID=Msa0174510;Name=Msa0174510 |
| chr1_4 | mRNA | 60180203 | 60183562 | 60180203 | ID=Msa0174510-mRNA-1;Parent=Msa0174510;Name=Msa0174510-mRNA-1;_AED=0.16;_eAED=0.16;_QI=54|0.85|0.87|1|1|1|8|351|375 |
| chr1_4 | exon | 60180203 | 60180438 | 60180203 | ID=Msa0174510-mRNA-1:exon:18946;Parent=Msa0174510-mRNA-1 |
| chr1_4 | exon | 60180523 | 60180653 | 60180523 | ID=Msa0174510-mRNA-1:exon:18947;Parent=Msa0174510-mRNA-1 |
| chr1_4 | exon | 60180895 | 60180980 | 60180895 | ID=Msa0174510-mRNA-1:exon:18948;Parent=Msa0174510-mRNA-1 |
| chr1_4 | exon | 60181699 | 60181806 | 60181699 | ID=Msa0174510-mRNA-1:exon:18949;Parent=Msa0174510-mRNA-1 |
| chr1_4 | exon | 60182229 | 60182343 | 60182229 | ID=Msa0174510-mRNA-1:exon:18950;Parent=Msa0174510-mRNA-1 |
| chr1_4 | exon | 60182455 | 60182609 | 60182455 | ID=Msa0174510-mRNA-1:exon:18951;Parent=Msa0174510-mRNA-1 |
| chr1_4 | exon | 60182774 | 60182899 | 60182774 | ID=Msa0174510-mRNA-1:exon:18952;Parent=Msa0174510-mRNA-1 |
| chr1_4 | exon | 60182987 | 60183562 | 60182987 | ID=Msa0174510-mRNA-1:exon:18953;Parent=Msa0174510-mRNA-1 |
| chr1_4 | five_prime_UTR | 60180203 | 60180256 | 60180203 | ID=Msa0174510-mRNA-1:five_prime_utr;Parent=Msa0174510-mRNA-1 |
| chr1_4 | CDS | 60180257 | 60180438 | 60180257 | ID=Msa0174510-mRNA-1:cds;Parent=Msa0174510-mRNA-1 |
| chr1_4 | CDS | 60180523 | 60180653 | 60180523 | ID=Msa0174510-mRNA-1:cds;Parent=Msa0174510-mRNA-1 |
| chr1_4 | CDS | 60180895 | 60180980 | 60180895 | ID=Msa0174510-mRNA-1:cds;Parent=Msa0174510-mRNA-1 |
| chr1_4 | CDS | 60181699 | 60181806 | 60181699 | ID=Msa0174510-mRNA-1:cds;Parent=Msa0174510-mRNA-1 |
| chr1_4 | CDS | 60182229 | 60182343 | 60182229 | ID=Msa0174510-mRNA-1:cds;Parent=Msa0174510-mRNA-1 |
| chr1_4 | CDS | 60182455 | 60182609 | 60182455 | ID=Msa0174510-mRNA-1:cds;Parent=Msa0174510-mRNA-1 |
| chr1_4 | CDS | 60182774 | 60182899 | 60182774 | ID=Msa0174510-mRNA-1:cds;Parent=Msa0174510-mRNA-1 |
| chr1_4 | CDS | 60182987 | 60183211 | 60182987 | ID=Msa0174510-mRNA-1:cds;Parent=Msa0174510-mRNA-1 |
| chr1_4 | three_prime_UTR | 60183212 | 60183562 | 60183212 | ID=Msa0174510-mRNA-1:three_prime_utr;Parent=Msa0174510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
