AlfalfaGEDB | Msa0506740

M. sativa cultivar zhongmu-4 / Msa0506740

KEGG: K01802
GO: GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006464 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009579 GO:0009987 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031977 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044436 GO:0044444 GO:0044464 GO:0061077 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564
PFAM: PF00254.31

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0506740	XP_003603857.1	96.053	228	6	2	1	225	1	228	1.50e-156	443

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0506740	sp\|Q9LM71\|FKB18_ARATH	63.913	230	64	4	3	222	5	225	6.03e-89	265

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0506740	G7J5Z0	96.053	228	6	2	1	225	1	228	7.14e-157	443

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0506740	0.858286	9.142838e-63	-8.615850e-47
Msa0001420	Msa0506740	0.849884	2.427238e-60	-8.615850e-47
Msa0001510	Msa0506740	0.922051	1.623428e-88	-8.615850e-47
Msa0001540	Msa0506740	0.920303	1.518727e-87	-8.615850e-47
Msa0002060	Msa0506740	0.847002	1.522778e-59	-8.615850e-47
Msa0002690	Msa0506740	0.889657	1.990992e-73	-8.615850e-47
Msa0002700	Msa0506740	0.881526	2.231563e-70	-8.615850e-47
Msa0003340	Msa0506740	0.803774	2.968958e-49	-8.615850e-47
Msa0004180	Msa0506740	0.890649	8.136648e-74	-8.615850e-47
Msa0006580	Msa0506740	0.853516	2.268816e-61	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0506740	MtrunA17_Chr3g0144211	96.053	228	6	2	1	225	1	228	1.38e-160	443
Msa0506740	MtrunA17_Chr1g0179681	38.764	178	80	4	50	222	90	243	1.04e-27	105

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0506740	AT1G20810.1	63.913	230	64	4	3	222	5	225	6.13e-90	265
Msa0506740	AT1G20810.2	71.676	173	48	1	44	215	46	218	4.83e-80	239
Msa0506740	AT3G10060.1	41.916	167	69	4	60	222	74	216	1.09e-28	108

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Find 70 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGGAACGTTGATCATTA+CGG	0.500002	3_4:+53399777	Msa0506740:CDS
AAAGCCATATGAATTCAAGG+TGG	0.730629	3_4:+53400699	Msa0506740:intron
AAAGGCCCAATAGCTGAAAA+AGG	0.368705	3_4:+53400134	Msa0506740:CDS
AAAGGGAATGAATGAGATTC+CGG	0.389171	3_4:+53400995	Msa0506740:CDS
AAATATTGAACTTCTGCAAG+TGG	0.566237	3_4:+53401369	Msa0506740:CDS
AAGCCATATGAATTCAAGGT+GGG	0.651080	3_4:+53400700	Msa0506740:intron
AATAGTTGAAGGAATGCGAG+TGG	0.658026	3_4:+53400822	Msa0506740:CDS
AATATATGGTAAAATAGTAG+AGG	0.614260	3_4:+53399677	Msa0506740:five_prime_UTR
AATGAAATGGATAGAATATA+TGG	0.315993	3_4:+53399663	Msa0506740:five_prime_UTR
AATTGGAACTGCAAGTGTAA+AGG	0.497189	3_4:-53399734	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAGAAATCGAAGAAATGAAA+TGG	+	chr3_4:53399650-53399669	Msa0506740:five_prime_UTR	30.0%
TAACAACCAAGTTAACGAAT+TGG	-	chr3_4:53399754-53399773	None:intergenic	30.0%
TAACTTGGTTGTTACAGAAA+CGG	+	chr3_4:53399760-53399779	Msa0506740:CDS	30.0%
GAAGTGACATAATCATCAAT+GGG	-	chr3_4:53399957-53399976	None:intergenic	30.0%
GAACATAGTTTAACAGCAAA+TGG	-	chr3_4:53400007-53400026	None:intergenic	30.0%
CACTTTGATTGTTTATATCG+CGG	+	chr3_4:53400264-53400283	Msa0506740:CDS	30.0%
TCAATGCTAGTTGTAACTAT+CGG	+	chr3_4:53400412-53400431	Msa0506740:intron	30.0%
TTGAAAGCCATATGAATTCA+AGG	+	chr3_4:53400696-53400715	Msa0506740:intron	30.0%
AAATATTGAACTTCTGCAAG+TGG	+	chr3_4:53401369-53401388	Msa0506740:CDS	30.0%
CAAAAAGAGGAAAACATCAA+TGG	-	chr3_4:53401498-53401517	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	53399650	53401740	53399650	ID=Msa0506740;Name=Msa0506740
chr3_4	mRNA	53399650	53401740	53399650	ID=Msa0506740-mRNA-1;Parent=Msa0506740;Name=Msa0506740-mRNA-1;_AED=0.13;_eAED=0.13;_QI=73\|1\|1\|1\|1\|1\|6\|338\|225
chr3_4	exon	53399650	53399978	53399650	ID=Msa0506740-mRNA-1:exon:11846;Parent=Msa0506740-mRNA-1
chr3_4	exon	53400099	53400169	53400099	ID=Msa0506740-mRNA-1:exon:11847;Parent=Msa0506740-mRNA-1
chr3_4	exon	53400261	53400347	53400261	ID=Msa0506740-mRNA-1:exon:11848;Parent=Msa0506740-mRNA-1
chr3_4	exon	53400703	53400852	53400703	ID=Msa0506740-mRNA-1:exon:11849;Parent=Msa0506740-mRNA-1
chr3_4	exon	53400957	53401016	53400957	ID=Msa0506740-mRNA-1:exon:11850;Parent=Msa0506740-mRNA-1
chr3_4	exon	53401349	53401740	53401349	ID=Msa0506740-mRNA-1:exon:11851;Parent=Msa0506740-mRNA-1
chr3_4	five_prime_UTR	53399650	53399722	53399650	ID=Msa0506740-mRNA-1:five_prime_utr;Parent=Msa0506740-mRNA-1
chr3_4	CDS	53399723	53399978	53399723	ID=Msa0506740-mRNA-1:cds;Parent=Msa0506740-mRNA-1
chr3_4	CDS	53400099	53400169	53400099	ID=Msa0506740-mRNA-1:cds;Parent=Msa0506740-mRNA-1
chr3_4	CDS	53400261	53400347	53400261	ID=Msa0506740-mRNA-1:cds;Parent=Msa0506740-mRNA-1
chr3_4	CDS	53400703	53400852	53400703	ID=Msa0506740-mRNA-1:cds;Parent=Msa0506740-mRNA-1
chr3_4	CDS	53400957	53401016	53400957	ID=Msa0506740-mRNA-1:cds;Parent=Msa0506740-mRNA-1
chr3_4	CDS	53401349	53401402	53401349	ID=Msa0506740-mRNA-1:cds;Parent=Msa0506740-mRNA-1
chr3_4	three_prime_UTR	53401403	53401740	53401403	ID=Msa0506740-mRNA-1:three_prime_utr;Parent=Msa0506740-mRNA-1

Gene Sequence

>Msa0506740

ATGACTTCTTCCCTTTACACTTGCAGTTCCAATTCGTTAACTTGGTTGTTACAGAAACGGAACGTTGATCATTACGGAGGTTTCAGCTTGAGACGACGGGCATTGACGGTGTTGGCACTTTCTCAATCGAGAAGGTCCACGGCGATTCTTATTTCATCCTTGCCTTTCACCTTCGTTTTCCTCTCTCCACCACCAGCGGAGGCCAGAGAAAGACGCAAGAAGAAGAACATTCCCATTGATGATTATGTCACTTCCCCTGATGGATTAAAATACTATGATTTTCTTGAGGGAAAAGGCCCAATAGCTGAAAAAGGATCAACTGTTCAGGTGCACTTTGATTGTTTATATCGCGGAATTACAGCTGTTTCAAGTCGAGAATCTAAACTCCTAGCTGGAAATCGTGTTATAGCCCAGCCATATGAATTCAAGGTGGGAGCTCCGCCCGGAAAGGAAAGGAAGCGTGAATTTGTCGACAACCCAAATGGTCTATTCTCAGCACAAGCAGCACCAAAACCTCCACAAGCCATGTACACAATAGTTGAAGGAATGCGAGTGGGTGGAAAGCGAACTGTGATTGTTCCTCCTGAAAAAGGGTATGGAAAAAAGGGAATGAATGAGATTCCGCCTGGAGCTACATTTGAACTAAATATTGAACTTCTGCAAGTGGCATCTACATGA

Protein sequence

>Msa0506740

MTSSLYTCSSNSLTWLLQKRNVDHYGGFSLRRRALTVLALSQSRRSTAILISSLPFTFVFLSPPPAEARERRKKKNIPIDDYVTSPDGLKYYDFLEGKGPIAEKGSTVQVHFDCLYRGITAVSSRESKLLAGNRVIAQPYEFKVGAPPGKERKREFVDNPNGLFSAQAAPKPPQAMYTIVEGMRVGGKRTVIVPPEKGYGKKGMNEIPPGATFELNIELLQVAST*