AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0506740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0506740 MtrunA17_Chr3g0144211 96.053 228 6 2 1 225 1 228 1.38e-160 443
Msa0506740 MtrunA17_Chr1g0179681 38.764 178 80 4 50 222 90 243 1.04e-27 105
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0506740 AT1G20810.1 63.913 230 64 4 3 222 5 225 6.13e-90 265
Msa0506740 AT1G20810.2 71.676 173 48 1 44 215 46 218 4.83e-80 239
Msa0506740 AT3G10060.1 41.916 167 69 4 60 222 74 216 1.09e-28 108

Find 70 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACGCTTCCTTTCCTTTC+CGG 0.156985 3_4:-53400731 None:intergenic
GTGATTGTTCCTCCTGAAAA+AGG 0.202905 3_4:+53400963 Msa0506740:CDS
TCACGCTTCCTTTCCTTTCC+GGG 0.259693 3_4:-53400730 None:intergenic
CTTCTTCTTGCGTCTTTCTC+TGG 0.307570 3_4:-53399925 None:intergenic
TACATGGCTTGTGGAGGTTT+TGG 0.308187 3_4:-53400796 None:intergenic
AATGAAATGGATAGAATATA+TGG 0.315993 3_4:+53399663 Msa0506740:five_prime_UTR
AAAGGCCCAATAGCTGAAAA+AGG 0.368705 3_4:+53400134 Msa0506740:CDS
AAAGGGAATGAATGAGATTC+CGG 0.389171 3_4:+53400995 Msa0506740:CDS
AGCCATAGCCCAAGCCTCAT+AGG 0.392405 3_4:-53401463 None:intergenic
TAACAACCAAGTTAACGAAT+TGG 0.394998 3_4:-53399751 None:intergenic
GAGAAATCGAAGAAATGAAA+TGG 0.417294 3_4:+53399650 Msa0506740:five_prime_UTR
GCTCCCACCTTGAATTCATA+TGG 0.419789 3_4:-53400703 None:intergenic
TGTGCTGAGAATAGACCATT+TGG 0.426502 3_4:-53400766 None:intergenic
TCCTTCAACTATTGTGTACA+TGG 0.428423 3_4:-53400812 None:intergenic
CGTCTTTCTCTGGCCTCCGC+TGG 0.429487 3_4:-53399915 None:intergenic
AGTTTGTACCCTATGAGGCT+TGG 0.432716 3_4:+53401454 Msa0506740:three_prime_UTR
GTTTGTACCCTATGAGGCTT+GGG 0.434434 3_4:+53401455 Msa0506740:three_prime_UTR
ATTGGAACTGCAAGTGTAAA+GGG 0.437508 3_4:-53399733 None:intergenic
TTGAAAGCCATATGAATTCA+AGG 0.444661 3_4:+53400696 Msa0506740:intron
CGAGAATCTAAACTCCTAGC+TGG 0.452386 3_4:+53400306 Msa0506740:CDS
CTTGAGACGACGGGCATTGA+CGG 0.457214 3_4:+53399809 Msa0506740:CDS
TCTCTGGCCTCCGCTGGTGG+TGG 0.460486 3_4:-53399909 None:intergenic
TTCAGAGTTTGTACCCTATG+AGG 0.464666 3_4:+53401449 Msa0506740:three_prime_UTR
GGAAGTGACATAATCATCAA+TGG 0.467741 3_4:-53399955 None:intergenic
ACCCTATGAGGCTTGGGCTA+TGG 0.470639 3_4:+53401461 Msa0506740:three_prime_UTR
TAACTTGGTTGTTACAGAAA+CGG 0.475122 3_4:+53399760 Msa0506740:CDS
GCAGTTCCAATTCGTTAACT+TGG 0.483413 3_4:+53399745 Msa0506740:CDS
CTTTCTCTGGCCTCCGCTGG+TGG 0.484138 3_4:-53399912 None:intergenic
AATTGGAACTGCAAGTGTAA+AGG 0.497189 3_4:-53399734 None:intergenic
CCTCCGCTGGTGGTGGAGAG+AGG 0.497265 3_4:-53399902 None:intergenic
AAACGGAACGTTGATCATTA+CGG 0.500002 3_4:+53399777 Msa0506740:CDS
TTTAGTTCAAATGTAGCTCC+AGG 0.505276 3_4:-53401349 None:intergenic
GCCATGTACACAATAGTTGA+AGG 0.511563 3_4:+53400811 Msa0506740:CDS
CTATAACACGATTTCCAGCT+AGG 0.516210 3_4:-53400320 None:intergenic
CAAATTGCAGCCACGAGAGA+AGG 0.519056 3_4:-53401619 None:intergenic
GAAGTGACATAATCATCAAT+GGG 0.521859 3_4:-53399954 None:intergenic
TTCAAGGTGGGAGCTCCGCC+CGG 0.533829 3_4:+53400712 Msa0506740:CDS
GTGCTGAGAATAGACCATTT+GGG 0.537998 3_4:-53400765 None:intergenic
TTCTCAATCGAGAAGGTCCA+CGG 0.543491 3_4:+53399842 Msa0506740:CDS
AGGTTTCAGCTTGAGACGAC+GGG 0.544817 3_4:+53399800 Msa0506740:CDS
GAATTTGTCGACAACCCAAA+TGG 0.547525 3_4:+53400751 Msa0506740:CDS
TGGAAATCGTGTTATAGCCC+AGG 0.548668 3_4:+53400326 Msa0506740:CDS
CCTCTCTCCACCACCAGCGG+AGG 0.550932 3_4:+53399902 Msa0506740:CDS
CACTTTGATTGTTTATATCG+CGG 0.551543 3_4:+53400264 Msa0506740:CDS
CACTTATCTTCCTTCTCTCG+TGG 0.565134 3_4:+53401609 Msa0506740:three_prime_UTR
GCCATAGCCCAAGCCTCATA+GGG 0.565279 3_4:-53401462 None:intergenic
AAATATTGAACTTCTGCAAG+TGG 0.566237 3_4:+53401369 Msa0506740:CDS
GAGAGGAAAACGAAGGTGAA+AGG 0.571097 3_4:-53399885 None:intergenic
GGTGGGAGCTCCGCCCGGAA+AGG 0.571793 3_4:+53400717 Msa0506740:CDS
GTTGAAGGAATGCGAGTGGG+TGG 0.575403 3_4:+53400826 Msa0506740:CDS
TTTCCTCTCTCCACCACCAG+CGG 0.582844 3_4:+53399899 Msa0506740:CDS
ACTATTGTGTACATGGCTTG+TGG 0.588221 3_4:-53400805 None:intergenic
ACGACGGGCATTGACGGTGT+TGG 0.590833 3_4:+53399815 Msa0506740:CDS
AATATATGGTAAAATAGTAG+AGG 0.614260 3_4:+53399677 Msa0506740:five_prime_UTR
GAGCTCCGCCCGGAAAGGAA+AGG 0.619888 3_4:+53400722 Msa0506740:CDS
CGCTTCCTTTCCTTTCCGGG+CGG 0.626353 3_4:-53400727 None:intergenic
TGGCACTTTCTCAATCGAGA+AGG 0.634172 3_4:+53399835 Msa0506740:CDS
AGGAATGCGAGTGGGTGGAA+AGG 0.636293 3_4:+53400831 Msa0506740:CDS
GAGGTTTCAGCTTGAGACGA+CGG 0.646422 3_4:+53399799 Msa0506740:CDS
AAGCCATATGAATTCAAGGT+GGG 0.651080 3_4:+53400700 Msa0506740:intron
AATAGTTGAAGGAATGCGAG+TGG 0.658026 3_4:+53400822 Msa0506740:CDS
GAAAACGAAGGTGAAAGGCA+AGG 0.661753 3_4:-53399880 None:intergenic
ATAGTTGAAGGAATGCGAGT+GGG 0.666151 3_4:+53400823 Msa0506740:CDS
GGATGAAATAAGAATCGCCG+TGG 0.669128 3_4:-53399859 None:intergenic
ATTGTGTACATGGCTTGTGG+AGG 0.674657 3_4:-53400802 None:intergenic
CGGAACGTTGATCATTACGG+AGG 0.678320 3_4:+53399780 Msa0506740:CDS
GGTAAAATAGTAGAGGTGTG+AGG 0.693651 3_4:+53399684 Msa0506740:five_prime_UTR
TGGTGGAGAGAGGAAAACGA+AGG 0.707066 3_4:-53399892 None:intergenic
GATCTCAATATATATGTACG+TGG 0.729740 3_4:+53401647 Msa0506740:three_prime_UTR
AAAGCCATATGAATTCAAGG+TGG 0.730629 3_4:+53400699 Msa0506740:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATTAAAGTATATAAGAAAT+AGG - chr3_4:53400592-53400611 None:intergenic 15.0%
!!! TATTGATTAGATAAAAGTTA+TGG + chr3_4:53401235-53401254 Msa0506740:intron 15.0%
!! CATTAAAGTATATAAGAAAT+AGG - chr3_4:53400592-53400611 None:intergenic 15.0%
!!! TATTGATTAGATAAAAGTTA+TGG + chr3_4:53401235-53401254 Msa0506740:intron 15.0%
!! AATGAAATGGATAGAATATA+TGG + chr3_4:53399663-53399682 Msa0506740:five_prime_UTR 20.0%
!! AATATATGGTAAAATAGTAG+AGG + chr3_4:53399677-53399696 Msa0506740:five_prime_UTR 20.0%
!!! AAAATACTATGATTTTCTTG+AGG + chr3_4:53400109-53400128 Msa0506740:CDS 20.0%
!!! AAATACTATGATTTTCTTGA+GGG + chr3_4:53400110-53400129 Msa0506740:CDS 20.0%
!! AAACTAAATAGGCAAATTAT+TGG - chr3_4:53400354-53400373 None:intergenic 20.0%
!! ACATAACTCAAAATGATATT+GGG - chr3_4:53400560-53400579 None:intergenic 20.0%
!!! CTTATTTTTCTCTTAAATGA+TGG + chr3_4:53400928-53400947 Msa0506740:intron 20.0%
!! ATGTACAATTAAAATAGTAG+AGG - chr3_4:53401199-53401218 None:intergenic 20.0%
!! AATGAAATGGATAGAATATA+TGG + chr3_4:53399663-53399682 Msa0506740:five_prime_UTR 20.0%
!! AATATATGGTAAAATAGTAG+AGG + chr3_4:53399677-53399696 Msa0506740:five_prime_UTR 20.0%
!!! AAAATACTATGATTTTCTTG+AGG + chr3_4:53400109-53400128 Msa0506740:CDS 20.0%
!!! AAATACTATGATTTTCTTGA+GGG + chr3_4:53400110-53400129 Msa0506740:CDS 20.0%
!! AAACTAAATAGGCAAATTAT+TGG - chr3_4:53400354-53400373 None:intergenic 20.0%
!! ACATAACTCAAAATGATATT+GGG - chr3_4:53400560-53400579 None:intergenic 20.0%
!!! CTTATTTTTCTCTTAAATGA+TGG + chr3_4:53400928-53400947 Msa0506740:intron 20.0%
!! ATGTACAATTAAAATAGTAG+AGG - chr3_4:53401199-53401218 None:intergenic 20.0%
! AACATAGTTTAACAGCAAAT+GGG - chr3_4:53400006-53400025 None:intergenic 25.0%
! CATAACTCAAAATGATATTG+GGG - chr3_4:53400559-53400578 None:intergenic 25.0%
! GACATAACTCAAAATGATAT+TGG - chr3_4:53400561-53400580 None:intergenic 25.0%
! GTATATAAGAAATAGGACTT+TGG - chr3_4:53400585-53400604 None:intergenic 25.0%
! ACAAAGAACAACAGAATTTA+AGG - chr3_4:53401075-53401094 None:intergenic 25.0%
!!! TTTCAATAGATTTGCTAGAT+GGG - chr3_4:53401111-53401130 None:intergenic 25.0%
! ATCTATTGAAACATACACTT+AGG + chr3_4:53401120-53401139 Msa0506740:intron 25.0%
! AAAAAGAGGAAAACATCAAT+GGG - chr3_4:53401497-53401516 None:intergenic 25.0%
!!! TTTTTGTAGTCTTTTGACTA+GGG + chr3_4:53401512-53401531 Msa0506740:three_prime_UTR 25.0%
!! AATCATTTTGTGAAAGGAAA+AGG - chr3_4:53401543-53401562 None:intergenic 25.0%
!!! AAGGAAGATAAGTGTTTTTT+TGG - chr3_4:53401603-53401622 None:intergenic 25.0%
!!! GGATCACTTTTTGTATATTA+TGG + chr3_4:53401668-53401687 Msa0506740:three_prime_UTR 25.0%
! ATTTCATTTCTTCGATTTCT+CGG - chr3_4:53399651-53399670 None:intergenic 25.0%
! AACATAGTTTAACAGCAAAT+GGG - chr3_4:53400006-53400025 None:intergenic 25.0%
! CATAACTCAAAATGATATTG+GGG - chr3_4:53400559-53400578 None:intergenic 25.0%
! GACATAACTCAAAATGATAT+TGG - chr3_4:53400561-53400580 None:intergenic 25.0%
! GTATATAAGAAATAGGACTT+TGG - chr3_4:53400585-53400604 None:intergenic 25.0%
! ACAAAGAACAACAGAATTTA+AGG - chr3_4:53401075-53401094 None:intergenic 25.0%
!!! TTTCAATAGATTTGCTAGAT+GGG - chr3_4:53401111-53401130 None:intergenic 25.0%
! ATCTATTGAAACATACACTT+AGG + chr3_4:53401120-53401139 Msa0506740:intron 25.0%
! AAAAAGAGGAAAACATCAAT+GGG - chr3_4:53401497-53401516 None:intergenic 25.0%
!!! TTTTTGTAGTCTTTTGACTA+GGG + chr3_4:53401512-53401531 Msa0506740:three_prime_UTR 25.0%
!! AATCATTTTGTGAAAGGAAA+AGG - chr3_4:53401543-53401562 None:intergenic 25.0%
!!! AAGGAAGATAAGTGTTTTTT+TGG - chr3_4:53401603-53401622 None:intergenic 25.0%
!!! GGATCACTTTTTGTATATTA+TGG + chr3_4:53401668-53401687 Msa0506740:three_prime_UTR 25.0%
GAGAAATCGAAGAAATGAAA+TGG + chr3_4:53399650-53399669 Msa0506740:five_prime_UTR 30.0%
TAACAACCAAGTTAACGAAT+TGG - chr3_4:53399754-53399773 None:intergenic 30.0%
TAACTTGGTTGTTACAGAAA+CGG + chr3_4:53399760-53399779 Msa0506740:CDS 30.0%
GAAGTGACATAATCATCAAT+GGG - chr3_4:53399957-53399976 None:intergenic 30.0%
GAACATAGTTTAACAGCAAA+TGG - chr3_4:53400007-53400026 None:intergenic 30.0%
! TATGATTTTCTTGAGGGAAA+AGG + chr3_4:53400116-53400135 Msa0506740:CDS 30.0%
!!! TTGATCCTTTTTCAGCTATT+GGG - chr3_4:53400142-53400161 None:intergenic 30.0%
CACTTTGATTGTTTATATCG+CGG + chr3_4:53400264-53400283 Msa0506740:CDS 30.0%
TCAATGCTAGTTGTAACTAT+CGG + chr3_4:53400412-53400431 Msa0506740:intron 30.0%
! TTGTCTAGAAGAAAGCATAT+TGG + chr3_4:53400617-53400636 Msa0506740:intron 30.0%
TTGAAAGCCATATGAATTCA+AGG + chr3_4:53400696-53400715 Msa0506740:intron 30.0%
!!! TTTTTTCCATACCCTTTTTC+AGG - chr3_4:53400978-53400997 None:intergenic 30.0%
! TGAAAAAGGGTATGGAAAAA+AGG + chr3_4:53400977-53400996 Msa0506740:CDS 30.0%
! GAAAAAGGGTATGGAAAAAA+GGG + chr3_4:53400978-53400997 Msa0506740:CDS 30.0%
!! TTCAATAGATTTGCTAGATG+GGG - chr3_4:53401110-53401129 None:intergenic 30.0%
!! GTTTCAATAGATTTGCTAGA+TGG - chr3_4:53401112-53401131 None:intergenic 30.0%
AAATATTGAACTTCTGCAAG+TGG + chr3_4:53401369-53401388 Msa0506740:CDS 30.0%
CAAAAAGAGGAAAACATCAA+TGG - chr3_4:53401498-53401517 None:intergenic 30.0%
AGTCAAAAGACTACAAAAAG+AGG - chr3_4:53401511-53401530 None:intergenic 30.0%
!! CTTTTTGTAGTCTTTTGACT+AGG + chr3_4:53401511-53401530 Msa0506740:three_prime_UTR 30.0%
!!! GTGTTTTTTTGGTTACAAGA+AGG - chr3_4:53401592-53401611 None:intergenic 30.0%
GATCTCAATATATATGTACG+TGG + chr3_4:53401647-53401666 Msa0506740:three_prime_UTR 30.0%
TTTCATTTCTTCGATTTCTC+GGG - chr3_4:53399650-53399669 None:intergenic 30.0%
GAGAAATCGAAGAAATGAAA+TGG + chr3_4:53399650-53399669 Msa0506740:five_prime_UTR 30.0%
TAACAACCAAGTTAACGAAT+TGG - chr3_4:53399754-53399773 None:intergenic 30.0%
TAACTTGGTTGTTACAGAAA+CGG + chr3_4:53399760-53399779 Msa0506740:CDS 30.0%
GAAGTGACATAATCATCAAT+GGG - chr3_4:53399957-53399976 None:intergenic 30.0%
GAACATAGTTTAACAGCAAA+TGG - chr3_4:53400007-53400026 None:intergenic 30.0%
! TATGATTTTCTTGAGGGAAA+AGG + chr3_4:53400116-53400135 Msa0506740:CDS 30.0%
!!! TTGATCCTTTTTCAGCTATT+GGG - chr3_4:53400142-53400161 None:intergenic 30.0%
CACTTTGATTGTTTATATCG+CGG + chr3_4:53400264-53400283 Msa0506740:CDS 30.0%
TCAATGCTAGTTGTAACTAT+CGG + chr3_4:53400412-53400431 Msa0506740:intron 30.0%
! TTGTCTAGAAGAAAGCATAT+TGG + chr3_4:53400617-53400636 Msa0506740:intron 30.0%
TTGAAAGCCATATGAATTCA+AGG + chr3_4:53400696-53400715 Msa0506740:intron 30.0%
!!! TTTTTTCCATACCCTTTTTC+AGG - chr3_4:53400978-53400997 None:intergenic 30.0%
! TGAAAAAGGGTATGGAAAAA+AGG + chr3_4:53400977-53400996 Msa0506740:CDS 30.0%
! GAAAAAGGGTATGGAAAAAA+GGG + chr3_4:53400978-53400997 Msa0506740:CDS 30.0%
!! TTCAATAGATTTGCTAGATG+GGG - chr3_4:53401110-53401129 None:intergenic 30.0%
!! GTTTCAATAGATTTGCTAGA+TGG - chr3_4:53401112-53401131 None:intergenic 30.0%
AAATATTGAACTTCTGCAAG+TGG + chr3_4:53401369-53401388 Msa0506740:CDS 30.0%
CAAAAAGAGGAAAACATCAA+TGG - chr3_4:53401498-53401517 None:intergenic 30.0%
AGTCAAAAGACTACAAAAAG+AGG - chr3_4:53401511-53401530 None:intergenic 30.0%
!! CTTTTTGTAGTCTTTTGACT+AGG + chr3_4:53401511-53401530 Msa0506740:three_prime_UTR 30.0%
!!! GTGTTTTTTTGGTTACAAGA+AGG - chr3_4:53401592-53401611 None:intergenic 30.0%
GATCTCAATATATATGTACG+TGG + chr3_4:53401647-53401666 Msa0506740:three_prime_UTR 30.0%
ATTGGAACTGCAAGTGTAAA+GGG - chr3_4:53399736-53399755 None:intergenic 35.0%
AATTGGAACTGCAAGTGTAA+AGG - chr3_4:53399737-53399756 None:intergenic 35.0%
AAACGGAACGTTGATCATTA+CGG + chr3_4:53399777-53399796 Msa0506740:CDS 35.0%
GGAAGTGACATAATCATCAA+TGG - chr3_4:53399958-53399977 None:intergenic 35.0%
!!! GTTGATCCTTTTTCAGCTAT+TGG - chr3_4:53400143-53400162 None:intergenic 35.0%
TGAAAAAGGATCAACTGTTC+AGG + chr3_4:53400148-53400167 Msa0506740:CDS 35.0%
TAGGCAAATTATTGGAACCT+GGG - chr3_4:53400346-53400365 None:intergenic 35.0%
ATAGGCAAATTATTGGAACC+TGG - chr3_4:53400347-53400366 None:intergenic 35.0%
GACACACGGAAAAACTAAAT+AGG - chr3_4:53400365-53400384 None:intergenic 35.0%
ACTCAAAATGATATTGGGGT+CGG - chr3_4:53400555-53400574 None:intergenic 35.0%
AAAGCCATATGAATTCAAGG+TGG + chr3_4:53400699-53400718 Msa0506740:intron 35.0%
AAGCCATATGAATTCAAGGT+GGG + chr3_4:53400700-53400719 Msa0506740:intron 35.0%
TCCTTCAACTATTGTGTACA+TGG - chr3_4:53400815-53400834 None:intergenic 35.0%
CACTAGAACAAAATCAAGAG+GGG - chr3_4:53400868-53400887 None:intergenic 35.0%
GCACTAGAACAAAATCAAGA+GGG - chr3_4:53400869-53400888 None:intergenic 35.0%
TGATTGTTCCTCCTGAAAAA+GGG + chr3_4:53400964-53400983 Msa0506740:CDS 35.0%
AAAGGGAATGAATGAGATTC+CGG + chr3_4:53400995-53401014 Msa0506740:CDS 35.0%
TGACAAGAACAGATCTTTAC+CGG - chr3_4:53401017-53401036 None:intergenic 35.0%
! TTTAGTTCAAATGTAGCTCC+AGG - chr3_4:53401352-53401371 None:intergenic 35.0%
! CAGCACAATCATTTTGTGAA+AGG - chr3_4:53401549-53401568 None:intergenic 35.0%
ATTGGAACTGCAAGTGTAAA+GGG - chr3_4:53399736-53399755 None:intergenic 35.0%
AATTGGAACTGCAAGTGTAA+AGG - chr3_4:53399737-53399756 None:intergenic 35.0%
AAACGGAACGTTGATCATTA+CGG + chr3_4:53399777-53399796 Msa0506740:CDS 35.0%
GGAAGTGACATAATCATCAA+TGG - chr3_4:53399958-53399977 None:intergenic 35.0%
!!! GTTGATCCTTTTTCAGCTAT+TGG - chr3_4:53400143-53400162 None:intergenic 35.0%
TGAAAAAGGATCAACTGTTC+AGG + chr3_4:53400148-53400167 Msa0506740:CDS 35.0%
TAGGCAAATTATTGGAACCT+GGG - chr3_4:53400346-53400365 None:intergenic 35.0%
ATAGGCAAATTATTGGAACC+TGG - chr3_4:53400347-53400366 None:intergenic 35.0%
GACACACGGAAAAACTAAAT+AGG - chr3_4:53400365-53400384 None:intergenic 35.0%
ACTCAAAATGATATTGGGGT+CGG - chr3_4:53400555-53400574 None:intergenic 35.0%
AAAGCCATATGAATTCAAGG+TGG + chr3_4:53400699-53400718 Msa0506740:intron 35.0%
AAGCCATATGAATTCAAGGT+GGG + chr3_4:53400700-53400719 Msa0506740:intron 35.0%
TCCTTCAACTATTGTGTACA+TGG - chr3_4:53400815-53400834 None:intergenic 35.0%
CACTAGAACAAAATCAAGAG+GGG - chr3_4:53400868-53400887 None:intergenic 35.0%
GCACTAGAACAAAATCAAGA+GGG - chr3_4:53400869-53400888 None:intergenic 35.0%
TGATTGTTCCTCCTGAAAAA+GGG + chr3_4:53400964-53400983 Msa0506740:CDS 35.0%
AAAGGGAATGAATGAGATTC+CGG + chr3_4:53400995-53401014 Msa0506740:CDS 35.0%
TGACAAGAACAGATCTTTAC+CGG - chr3_4:53401017-53401036 None:intergenic 35.0%
! TTTAGTTCAAATGTAGCTCC+AGG - chr3_4:53401352-53401371 None:intergenic 35.0%
! CAGCACAATCATTTTGTGAA+AGG - chr3_4:53401549-53401568 None:intergenic 35.0%
! GGTAAAATAGTAGAGGTGTG+AGG + chr3_4:53399684-53399703 Msa0506740:five_prime_UTR 40.0%
GCAGTTCCAATTCGTTAACT+TGG + chr3_4:53399745-53399764 Msa0506740:CDS 40.0%
TTGAGTGAGGAAGGAATTAC+GGG - chr3_4:53399979-53399998 None:intergenic 40.0%
GTTGAGTGAGGAAGGAATTA+CGG - chr3_4:53399980-53399999 None:intergenic 40.0%
GTGATGTTTGATTCAGCTGA+TGG + chr3_4:53400083-53400102 Msa0506740:intron 40.0%
AAAGGCCCAATAGCTGAAAA+AGG + chr3_4:53400134-53400153 Msa0506740:CDS 40.0%
CTATAACACGATTTCCAGCT+AGG - chr3_4:53400323-53400342 None:intergenic 40.0%
GTTTGAGCTAAGAGTTGTGA+AGG - chr3_4:53400520-53400539 None:intergenic 40.0%
CTCAAAATGATATTGGGGTC+GGG - chr3_4:53400554-53400573 None:intergenic 40.0%
GCATTCATCAGCATTCAACA+CGG - chr3_4:53400663-53400682 None:intergenic 40.0%
! GGCTTTCAAGAGTATAAAGC+AGG - chr3_4:53400685-53400704 None:intergenic 40.0%
GAATTTGTCGACAACCCAAA+TGG + chr3_4:53400751-53400770 Msa0506740:CDS 40.0%
GTGCTGAGAATAGACCATTT+GGG - chr3_4:53400768-53400787 None:intergenic 40.0%
TGTGCTGAGAATAGACCATT+TGG - chr3_4:53400769-53400788 None:intergenic 40.0%
ACTATTGTGTACATGGCTTG+TGG - chr3_4:53400808-53400827 None:intergenic 40.0%
GCCATGTACACAATAGTTGA+AGG + chr3_4:53400811-53400830 Msa0506740:CDS 40.0%
AATAGTTGAAGGAATGCGAG+TGG + chr3_4:53400822-53400841 Msa0506740:CDS 40.0%
ATAGTTGAAGGAATGCGAGT+GGG + chr3_4:53400823-53400842 Msa0506740:CDS 40.0%
CGCACTAGAACAAAATCAAG+AGG - chr3_4:53400870-53400889 None:intergenic 40.0%
GTGATTGTTCCTCCTGAAAA+AGG + chr3_4:53400963-53400982 Msa0506740:CDS 40.0%
!!! TTTCCATACCCTTTTTCAGG+AGG - chr3_4:53400975-53400994 None:intergenic 40.0%
AACTTTCATGACAACGCCTA+AGG - chr3_4:53401153-53401172 None:intergenic 40.0%
TTGTTTATGTTGTTGCAGCC+TGG + chr3_4:53401331-53401350 Msa0506740:intron 40.0%
TTCAGAGTTTGTACCCTATG+AGG + chr3_4:53401449-53401468 Msa0506740:three_prime_UTR 40.0%
! GGTAAAATAGTAGAGGTGTG+AGG + chr3_4:53399684-53399703 Msa0506740:five_prime_UTR 40.0%
GCAGTTCCAATTCGTTAACT+TGG + chr3_4:53399745-53399764 Msa0506740:CDS 40.0%
TTGAGTGAGGAAGGAATTAC+GGG - chr3_4:53399979-53399998 None:intergenic 40.0%
GTTGAGTGAGGAAGGAATTA+CGG - chr3_4:53399980-53399999 None:intergenic 40.0%
GTGATGTTTGATTCAGCTGA+TGG + chr3_4:53400083-53400102 Msa0506740:intron 40.0%
AAAGGCCCAATAGCTGAAAA+AGG + chr3_4:53400134-53400153 Msa0506740:CDS 40.0%
CTATAACACGATTTCCAGCT+AGG - chr3_4:53400323-53400342 None:intergenic 40.0%
GTTTGAGCTAAGAGTTGTGA+AGG - chr3_4:53400520-53400539 None:intergenic 40.0%
CTCAAAATGATATTGGGGTC+GGG - chr3_4:53400554-53400573 None:intergenic 40.0%
GCATTCATCAGCATTCAACA+CGG - chr3_4:53400663-53400682 None:intergenic 40.0%
! GGCTTTCAAGAGTATAAAGC+AGG - chr3_4:53400685-53400704 None:intergenic 40.0%
GAATTTGTCGACAACCCAAA+TGG + chr3_4:53400751-53400770 Msa0506740:CDS 40.0%
GTGCTGAGAATAGACCATTT+GGG - chr3_4:53400768-53400787 None:intergenic 40.0%
TGTGCTGAGAATAGACCATT+TGG - chr3_4:53400769-53400788 None:intergenic 40.0%
ACTATTGTGTACATGGCTTG+TGG - chr3_4:53400808-53400827 None:intergenic 40.0%
GCCATGTACACAATAGTTGA+AGG + chr3_4:53400811-53400830 Msa0506740:CDS 40.0%
AATAGTTGAAGGAATGCGAG+TGG + chr3_4:53400822-53400841 Msa0506740:CDS 40.0%
ATAGTTGAAGGAATGCGAGT+GGG + chr3_4:53400823-53400842 Msa0506740:CDS 40.0%
CGCACTAGAACAAAATCAAG+AGG - chr3_4:53400870-53400889 None:intergenic 40.0%
GTGATTGTTCCTCCTGAAAA+AGG + chr3_4:53400963-53400982 Msa0506740:CDS 40.0%
!!! TTTCCATACCCTTTTTCAGG+AGG - chr3_4:53400975-53400994 None:intergenic 40.0%
AACTTTCATGACAACGCCTA+AGG - chr3_4:53401153-53401172 None:intergenic 40.0%
TTGTTTATGTTGTTGCAGCC+TGG + chr3_4:53401331-53401350 Msa0506740:intron 40.0%
TTCAGAGTTTGTACCCTATG+AGG + chr3_4:53401449-53401468 Msa0506740:three_prime_UTR 40.0%
TGGCACTTTCTCAATCGAGA+AGG + chr3_4:53399835-53399854 Msa0506740:CDS 45.0%
TTCTCAATCGAGAAGGTCCA+CGG + chr3_4:53399842-53399861 Msa0506740:CDS 45.0%
GGATGAAATAAGAATCGCCG+TGG - chr3_4:53399862-53399881 None:intergenic 45.0%
GAAAACGAAGGTGAAAGGCA+AGG - chr3_4:53399883-53399902 None:intergenic 45.0%
GAGAGGAAAACGAAGGTGAA+AGG - chr3_4:53399888-53399907 None:intergenic 45.0%
CTTCTTCTTGCGTCTTTCTC+TGG - chr3_4:53399928-53399947 None:intergenic 45.0%
ATGGGAATGTTGAGTGAGGA+AGG - chr3_4:53399988-53400007 None:intergenic 45.0%
GCAAATGGGAATGTTGAGTG+AGG - chr3_4:53399992-53400011 None:intergenic 45.0%
CGAGAATCTAAACTCCTAGC+TGG + chr3_4:53400306-53400325 Msa0506740:CDS 45.0%
TGGAAATCGTGTTATAGCCC+AGG + chr3_4:53400326-53400345 Msa0506740:CDS 45.0%
CACACACAAACACTGACACA+CGG - chr3_4:53400379-53400398 None:intergenic 45.0%
AGTGTTTGTGTGTGTGTGTG+AGG + chr3_4:53400385-53400404 Msa0506740:intron 45.0%
GTGTTTGTGTGTGTGTGTGA+GGG + chr3_4:53400386-53400405 Msa0506740:intron 45.0%
GCTCCCACCTTGAATTCATA+TGG - chr3_4:53400706-53400725 None:intergenic 45.0%
TTCACGCTTCCTTTCCTTTC+CGG - chr3_4:53400734-53400753 None:intergenic 45.0%
!! TACATGGCTTGTGGAGGTTT+TGG - chr3_4:53400799-53400818 None:intergenic 45.0%
! ATTGTGTACATGGCTTGTGG+AGG - chr3_4:53400805-53400824 None:intergenic 45.0%
GTTCCTCCTGAAAAAGGGTA+TGG + chr3_4:53400969-53400988 Msa0506740:CDS 45.0%
! ATTTGCTAGATGGGGACATC+AGG - chr3_4:53401102-53401121 None:intergenic 45.0%
ACACTTAGGACAAGTGCCTT+AGG + chr3_4:53401134-53401153 Msa0506740:intron 45.0%
TAGAGGTGAGCATAACAGAG+TGG - chr3_4:53401182-53401201 None:intergenic 45.0%
GTTCAACAAGCGCATGTTGT+AGG - chr3_4:53401310-53401329 None:intergenic 45.0%
AGTTTGTACCCTATGAGGCT+TGG + chr3_4:53401454-53401473 Msa0506740:three_prime_UTR 45.0%
GTTTGTACCCTATGAGGCTT+GGG + chr3_4:53401455-53401474 Msa0506740:three_prime_UTR 45.0%
CACTTATCTTCCTTCTCTCG+TGG + chr3_4:53401609-53401628 Msa0506740:three_prime_UTR 45.0%
TGGCACTTTCTCAATCGAGA+AGG + chr3_4:53399835-53399854 Msa0506740:CDS 45.0%
TTCTCAATCGAGAAGGTCCA+CGG + chr3_4:53399842-53399861 Msa0506740:CDS 45.0%
GGATGAAATAAGAATCGCCG+TGG - chr3_4:53399862-53399881 None:intergenic 45.0%
GAAAACGAAGGTGAAAGGCA+AGG - chr3_4:53399883-53399902 None:intergenic 45.0%
GAGAGGAAAACGAAGGTGAA+AGG - chr3_4:53399888-53399907 None:intergenic 45.0%
CTTCTTCTTGCGTCTTTCTC+TGG - chr3_4:53399928-53399947 None:intergenic 45.0%
ATGGGAATGTTGAGTGAGGA+AGG - chr3_4:53399988-53400007 None:intergenic 45.0%
GCAAATGGGAATGTTGAGTG+AGG - chr3_4:53399992-53400011 None:intergenic 45.0%
CGAGAATCTAAACTCCTAGC+TGG + chr3_4:53400306-53400325 Msa0506740:CDS 45.0%
TGGAAATCGTGTTATAGCCC+AGG + chr3_4:53400326-53400345 Msa0506740:CDS 45.0%
CACACACAAACACTGACACA+CGG - chr3_4:53400379-53400398 None:intergenic 45.0%
AGTGTTTGTGTGTGTGTGTG+AGG + chr3_4:53400385-53400404 Msa0506740:intron 45.0%
GTGTTTGTGTGTGTGTGTGA+GGG + chr3_4:53400386-53400405 Msa0506740:intron 45.0%
GCTCCCACCTTGAATTCATA+TGG - chr3_4:53400706-53400725 None:intergenic 45.0%
TTCACGCTTCCTTTCCTTTC+CGG - chr3_4:53400734-53400753 None:intergenic 45.0%
!! TACATGGCTTGTGGAGGTTT+TGG - chr3_4:53400799-53400818 None:intergenic 45.0%
! ATTGTGTACATGGCTTGTGG+AGG - chr3_4:53400805-53400824 None:intergenic 45.0%
GTTCCTCCTGAAAAAGGGTA+TGG + chr3_4:53400969-53400988 Msa0506740:CDS 45.0%
! ATTTGCTAGATGGGGACATC+AGG - chr3_4:53401102-53401121 None:intergenic 45.0%
ACACTTAGGACAAGTGCCTT+AGG + chr3_4:53401134-53401153 Msa0506740:intron 45.0%
TAGAGGTGAGCATAACAGAG+TGG - chr3_4:53401182-53401201 None:intergenic 45.0%
GTTCAACAAGCGCATGTTGT+AGG - chr3_4:53401310-53401329 None:intergenic 45.0%
AGTTTGTACCCTATGAGGCT+TGG + chr3_4:53401454-53401473 Msa0506740:three_prime_UTR 45.0%
GTTTGTACCCTATGAGGCTT+GGG + chr3_4:53401455-53401474 Msa0506740:three_prime_UTR 45.0%
CACTTATCTTCCTTCTCTCG+TGG + chr3_4:53401609-53401628 Msa0506740:three_prime_UTR 45.0%
CGGAACGTTGATCATTACGG+AGG + chr3_4:53399780-53399799 Msa0506740:CDS 50.0%
GAGGTTTCAGCTTGAGACGA+CGG + chr3_4:53399799-53399818 Msa0506740:CDS 50.0%
AGGTTTCAGCTTGAGACGAC+GGG + chr3_4:53399800-53399819 Msa0506740:CDS 50.0%
TGGTGGAGAGAGGAAAACGA+AGG - chr3_4:53399895-53399914 None:intergenic 50.0%
TTCACGTTCTTGCTGCTGAC+AGG + chr3_4:53400239-53400258 Msa0506740:intron 50.0%
TCACGCTTCCTTTCCTTTCC+GGG - chr3_4:53400733-53400752 None:intergenic 50.0%
CAAATTGCAGCCACGAGAGA+AGG - chr3_4:53401622-53401641 None:intergenic 50.0%
CGGAACGTTGATCATTACGG+AGG + chr3_4:53399780-53399799 Msa0506740:CDS 50.0%
GAGGTTTCAGCTTGAGACGA+CGG + chr3_4:53399799-53399818 Msa0506740:CDS 50.0%
AGGTTTCAGCTTGAGACGAC+GGG + chr3_4:53399800-53399819 Msa0506740:CDS 50.0%
TGGTGGAGAGAGGAAAACGA+AGG - chr3_4:53399895-53399914 None:intergenic 50.0%
TTCACGTTCTTGCTGCTGAC+AGG + chr3_4:53400239-53400258 Msa0506740:intron 50.0%
TCACGCTTCCTTTCCTTTCC+GGG - chr3_4:53400733-53400752 None:intergenic 50.0%
CAAATTGCAGCCACGAGAGA+AGG - chr3_4:53401622-53401641 None:intergenic 50.0%
!! CTTGAGACGACGGGCATTGA+CGG + chr3_4:53399809-53399828 Msa0506740:CDS 55.0%
TTTCCTCTCTCCACCACCAG+CGG + chr3_4:53399899-53399918 Msa0506740:CDS 55.0%
GTTGAAGGAATGCGAGTGGG+TGG + chr3_4:53400826-53400845 Msa0506740:CDS 55.0%
AGGAATGCGAGTGGGTGGAA+AGG + chr3_4:53400831-53400850 Msa0506740:CDS 55.0%
ACCCTATGAGGCTTGGGCTA+TGG + chr3_4:53401461-53401480 Msa0506740:three_prime_UTR 55.0%
GCCATAGCCCAAGCCTCATA+GGG - chr3_4:53401465-53401484 None:intergenic 55.0%
AGCCATAGCCCAAGCCTCAT+AGG - chr3_4:53401466-53401485 None:intergenic 55.0%
!! CTTGAGACGACGGGCATTGA+CGG + chr3_4:53399809-53399828 Msa0506740:CDS 55.0%
TTTCCTCTCTCCACCACCAG+CGG + chr3_4:53399899-53399918 Msa0506740:CDS 55.0%
GTTGAAGGAATGCGAGTGGG+TGG + chr3_4:53400826-53400845 Msa0506740:CDS 55.0%
AGGAATGCGAGTGGGTGGAA+AGG + chr3_4:53400831-53400850 Msa0506740:CDS 55.0%
ACCCTATGAGGCTTGGGCTA+TGG + chr3_4:53401461-53401480 Msa0506740:three_prime_UTR 55.0%
GCCATAGCCCAAGCCTCATA+GGG - chr3_4:53401465-53401484 None:intergenic 55.0%
AGCCATAGCCCAAGCCTCAT+AGG - chr3_4:53401466-53401485 None:intergenic 55.0%
!! ACGACGGGCATTGACGGTGT+TGG + chr3_4:53399815-53399834 Msa0506740:CDS 60.0%
TTGGGGTCGGGTAGCTCAAC+TGG - chr3_4:53400542-53400561 None:intergenic 60.0%
CGCTTCCTTTCCTTTCCGGG+CGG - chr3_4:53400730-53400749 None:intergenic 60.0%
!! ACGACGGGCATTGACGGTGT+TGG + chr3_4:53399815-53399834 Msa0506740:CDS 60.0%
TTGGGGTCGGGTAGCTCAAC+TGG - chr3_4:53400542-53400561 None:intergenic 60.0%
CGCTTCCTTTCCTTTCCGGG+CGG - chr3_4:53400730-53400749 None:intergenic 60.0%
CTTTCTCTGGCCTCCGCTGG+TGG - chr3_4:53399915-53399934 None:intergenic 65.0%
CGTCTTTCTCTGGCCTCCGC+TGG - chr3_4:53399918-53399937 None:intergenic 65.0%
TTCAAGGTGGGAGCTCCGCC+CGG + chr3_4:53400712-53400731 Msa0506740:CDS 65.0%
GAGCTCCGCCCGGAAAGGAA+AGG + chr3_4:53400722-53400741 Msa0506740:CDS 65.0%
CTTTCTCTGGCCTCCGCTGG+TGG - chr3_4:53399915-53399934 None:intergenic 65.0%
CGTCTTTCTCTGGCCTCCGC+TGG - chr3_4:53399918-53399937 None:intergenic 65.0%
TTCAAGGTGGGAGCTCCGCC+CGG + chr3_4:53400712-53400731 Msa0506740:CDS 65.0%
GAGCTCCGCCCGGAAAGGAA+AGG + chr3_4:53400722-53400741 Msa0506740:CDS 65.0%
!! CCTCCGCTGGTGGTGGAGAG+AGG - chr3_4:53399905-53399924 None:intergenic 70.0%
CCTCTCTCCACCACCAGCGG+AGG + chr3_4:53399902-53399921 Msa0506740:CDS 70.0%
TCTCTGGCCTCCGCTGGTGG+TGG - chr3_4:53399912-53399931 None:intergenic 70.0%
!! CCTCCGCTGGTGGTGGAGAG+AGG - chr3_4:53399905-53399924 None:intergenic 70.0%
CCTCTCTCCACCACCAGCGG+AGG + chr3_4:53399902-53399921 Msa0506740:CDS 70.0%
TCTCTGGCCTCCGCTGGTGG+TGG - chr3_4:53399912-53399931 None:intergenic 70.0%
GGTGGGAGCTCCGCCCGGAA+AGG + chr3_4:53400717-53400736 Msa0506740:CDS 75.0%
GGTGGGAGCTCCGCCCGGAA+AGG + chr3_4:53400717-53400736 Msa0506740:CDS 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 53399650 53401740 53399650 ID=Msa0506740;Name=Msa0506740
chr3_4 mRNA 53399650 53401740 53399650 ID=Msa0506740-mRNA-1;Parent=Msa0506740;Name=Msa0506740-mRNA-1;_AED=0.13;_eAED=0.13;_QI=73|1|1|1|1|1|6|338|225
chr3_4 exon 53399650 53399978 53399650 ID=Msa0506740-mRNA-1:exon:11846;Parent=Msa0506740-mRNA-1
chr3_4 exon 53400099 53400169 53400099 ID=Msa0506740-mRNA-1:exon:11847;Parent=Msa0506740-mRNA-1
chr3_4 exon 53400261 53400347 53400261 ID=Msa0506740-mRNA-1:exon:11848;Parent=Msa0506740-mRNA-1
chr3_4 exon 53400703 53400852 53400703 ID=Msa0506740-mRNA-1:exon:11849;Parent=Msa0506740-mRNA-1
chr3_4 exon 53400957 53401016 53400957 ID=Msa0506740-mRNA-1:exon:11850;Parent=Msa0506740-mRNA-1
chr3_4 exon 53401349 53401740 53401349 ID=Msa0506740-mRNA-1:exon:11851;Parent=Msa0506740-mRNA-1
chr3_4 five_prime_UTR 53399650 53399722 53399650 ID=Msa0506740-mRNA-1:five_prime_utr;Parent=Msa0506740-mRNA-1
chr3_4 CDS 53399723 53399978 53399723 ID=Msa0506740-mRNA-1:cds;Parent=Msa0506740-mRNA-1
chr3_4 CDS 53400099 53400169 53400099 ID=Msa0506740-mRNA-1:cds;Parent=Msa0506740-mRNA-1
chr3_4 CDS 53400261 53400347 53400261 ID=Msa0506740-mRNA-1:cds;Parent=Msa0506740-mRNA-1
chr3_4 CDS 53400703 53400852 53400703 ID=Msa0506740-mRNA-1:cds;Parent=Msa0506740-mRNA-1
chr3_4 CDS 53400957 53401016 53400957 ID=Msa0506740-mRNA-1:cds;Parent=Msa0506740-mRNA-1
chr3_4 CDS 53401349 53401402 53401349 ID=Msa0506740-mRNA-1:cds;Parent=Msa0506740-mRNA-1
chr3_4 three_prime_UTR 53401403 53401740 53401403 ID=Msa0506740-mRNA-1:three_prime_utr;Parent=Msa0506740-mRNA-1
Gene Sequence

>Msa0506740

ATGACTTCTTCCCTTTACACTTGCAGTTCCAATTCGTTAACTTGGTTGTTACAGAAACGGAACGTTGATCATTACGGAGGTTTCAGCTTGAGACGACGGGCATTGACGGTGTTGGCACTTTCTCAATCGAGAAGGTCCACGGCGATTCTTATTTCATCCTTGCCTTTCACCTTCGTTTTCCTCTCTCCACCACCAGCGGAGGCCAGAGAAAGACGCAAGAAGAAGAACATTCCCATTGATGATTATGTCACTTCCCCTGATGGATTAAAATACTATGATTTTCTTGAGGGAAAAGGCCCAATAGCTGAAAAAGGATCAACTGTTCAGGTGCACTTTGATTGTTTATATCGCGGAATTACAGCTGTTTCAAGTCGAGAATCTAAACTCCTAGCTGGAAATCGTGTTATAGCCCAGCCATATGAATTCAAGGTGGGAGCTCCGCCCGGAAAGGAAAGGAAGCGTGAATTTGTCGACAACCCAAATGGTCTATTCTCAGCACAAGCAGCACCAAAACCTCCACAAGCCATGTACACAATAGTTGAAGGAATGCGAGTGGGTGGAAAGCGAACTGTGATTGTTCCTCCTGAAAAAGGGTATGGAAAAAAGGGAATGAATGAGATTCCGCCTGGAGCTACATTTGAACTAAATATTGAACTTCTGCAAGTGGCATCTACATGA

Protein sequence

>Msa0506740

MTSSLYTCSSNSLTWLLQKRNVDHYGGFSLRRRALTVLALSQSRRSTAILISSLPFTFVFLSPPPAEARERRKKKNIPIDDYVTSPDGLKYYDFLEGKGPIAEKGSTVQVHFDCLYRGITAVSSRESKLLAGNRVIAQPYEFKVGAPPGKERKREFVDNPNGLFSAQAAPKPPQAMYTIVEGMRVGGKRTVIVPPEKGYGKKGMNEIPPGATFELNIELLQVAST*