AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0967940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0967940 MtrunA17_Chr2g0331271 97.382 191 5 0 1 191 1 191 1.84e-139 386
Msa0967940 MtrunA17_Chr1g0148731 53.846 104 46 2 72 174 60 162 1.41e-24 94.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0967940 AT3G16250.1 62.567 187 57 5 12 186 14 199 2.04e-77 230
Msa0967940 AT4G32590.1 53.846 104 46 2 72 174 70 172 1.74e-25 97.4
Msa0967940 AT4G32590.3 53.763 93 41 2 72 163 70 161 3.92e-19 80.9

Find 85 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTCATACATTATTCTTTA+TGG 0.076713 6_3:+98037856 Msa0967940:five_prime_UTR
CATTTCCTCATGTGCTATTT+TGG 0.129328 6_3:-98039755 None:intergenic
ACTCTTTCATAACTCTAAAA+TGG 0.161081 6_3:-98040061 None:intergenic
CCACTCTGACATAGTGTCTT+TGG 0.239108 6_3:-98039874 None:intergenic
CATGCTAATCTCCAATTCTT+TGG 0.246574 6_3:-98038947 None:intergenic
AGTGCCGACTGCTCTAATTT+TGG 0.281013 6_3:-98038129 None:intergenic
TATAATTGTGGTGTATATAG+TGG 0.298286 6_3:+98040035 Msa0967940:three_prime_UTR
GAGAGAGGTGTGAATGCATT+AGG 0.302699 6_3:-98038056 None:intergenic
TGCACGTGGCATAACATAAT+TGG 0.309607 6_3:+98039776 Msa0967940:three_prime_UTR
AGAGAGGTGTGAATGCATTA+GGG 0.321006 6_3:-98038055 None:intergenic
GACAAATGCAAAACCTATAG+AGG 0.334673 6_3:-98038201 None:intergenic
CCTTGTCCACTACAAGAAAA+TGG 0.347151 6_3:+98039540 Msa0967940:three_prime_UTR
CACCAATAGTCAACCGATAT+TGG 0.347679 6_3:-98039837 None:intergenic
CACTCTGACATAGTGTCTTT+GGG 0.356521 6_3:-98039873 None:intergenic
CTTTATAGAAACCAAAGAAT+TGG 0.359961 6_3:+98038936 Msa0967940:intron
TTATCTCATATAATTTGAAT+TGG 0.367948 6_3:-98037885 None:intergenic
GATTCTAACATTGAACTCTA+TGG 0.373731 6_3:+98038452 Msa0967940:CDS
AACTAGTGTTATGTTGTTGA+AGG 0.378823 6_3:-98037985 None:intergenic
AAGATCTAGTAACAATGTTC+TGG 0.382458 6_3:-98039652 None:intergenic
TAGGGGTTAGTTTGAGTTGG+AGG 0.393377 6_3:-98038037 None:intergenic
TCTAATGACCCTCCCTCTAT+AGG 0.394740 6_3:+98038188 Msa0967940:CDS
CACCAATATCGGTTGACTAT+TGG 0.405909 6_3:+98039835 Msa0967940:three_prime_UTR
AATCTTGTGCTTCTTGATCC+TGG 0.407919 6_3:+98039485 Msa0967940:three_prime_UTR
CTTGTAAAGAGTGTTGTGTT+TGG 0.421734 6_3:-98038104 None:intergenic
TGGAGTGTGTGTTTCATTTG+TGG 0.429047 6_3:-98037938 None:intergenic
TGCATGGAATTTGAGCTTAG+TGG 0.430235 6_3:-98037958 None:intergenic
CATTCATGTCCTTTCCACTC+TGG 0.430702 6_3:-98039153 None:intergenic
TGCACATCTGGTGTTCCATC+TGG 0.437999 6_3:-98038383 None:intergenic
CTCTTTCATAACTCTAAAAT+GGG 0.447758 6_3:-98040060 None:intergenic
CATTAGGGGTTAGTTTGAGT+TGG 0.450485 6_3:-98038040 None:intergenic
ATTTGCTATTAGGTTCTTGA+AGG 0.451453 6_3:+98038711 Msa0967940:intron
GATTCTAAGAGCACCAATAT+CGG 0.461537 6_3:+98039824 Msa0967940:three_prime_UTR
AGGATTCCAACCTTGTACAT+TGG 0.463397 6_3:+98039708 Msa0967940:three_prime_UTR
GCTGTACGATAATGCACATC+TGG 0.480063 6_3:-98038395 None:intergenic
GTGGGTGAAGCAGATTCTAC+AGG 0.486617 6_3:+98038980 Msa0967940:CDS
TTATTTCCAATGTACAAGGT+TGG 0.502984 6_3:-98039714 None:intergenic
CTATTAGGTTCTTGAAGGCA+AGG 0.503895 6_3:+98038716 Msa0967940:intron
TATATATCTCATATCCATGT+TGG 0.504179 6_3:-98037826 None:intergenic
TAAATTATTTATGATATCAA+AGG 0.510357 6_3:+98039993 Msa0967940:three_prime_UTR
GAAGCTTAGGAACATAATGT+TGG 0.511451 6_3:+98038430 Msa0967940:CDS
CGGCACTGTCCCTGAAAAGA+AGG 0.512597 6_3:+98038145 Msa0967940:CDS
CTTGTGGTGGACAGAAGCTT+AGG 0.512735 6_3:+98038417 Msa0967940:CDS
ACATGAATGGAAATATGAAA+AGG 0.521149 6_3:+98039167 Msa0967940:CDS
CAGAGTGGAAAGGACATGAA+TGG 0.529406 6_3:+98039154 Msa0967940:CDS
GTACTTATTTCCAATGTACA+AGG 0.532016 6_3:-98039718 None:intergenic
TCTTGATCCTGGTGATAGCT+AGG 0.533485 6_3:+98039496 Msa0967940:three_prime_UTR
TTATGTGAGGAAGAAGAGAG+AGG 0.539445 6_3:-98038071 None:intergenic
ATCGTTGCTCTGTAATGCTA+CGG 0.553797 6_3:+98039936 Msa0967940:three_prime_UTR
ATATAATGTAAATATAATTG+TGG 0.561227 6_3:+98040023 Msa0967940:three_prime_UTR
TGGAACTTGTGCTACATGTA+TGG 0.561485 6_3:+98038590 Msa0967940:CDS
TAGTCTGTGTTGCTACCAGA+TGG 0.569681 6_3:+98038368 Msa0967940:intron
TGGCATAACATAATTGGTTG+AGG 0.572563 6_3:+98039782 Msa0967940:three_prime_UTR
TGGGTGAAGCAGATTCTACA+GGG 0.575014 6_3:+98038981 Msa0967940:CDS
ATAATTGTGGTGTATATAGT+GGG 0.575074 6_3:+98040036 Msa0967940:three_prime_UTR
ATAACTTCAGCAAAACTCAA+AGG 0.583544 6_3:-98039961 None:intergenic
GATCCTGGTGATAGCTAGGA+CGG 0.588930 6_3:+98039500 Msa0967940:three_prime_UTR
TCTTTCTCTTTGTCAGTGCG+AGG 0.589508 6_3:-98038750 None:intergenic
ATGGTCGAGTTTGAATCAAG+TGG 0.592731 6_3:-98039617 None:intergenic
ATAAGCCAAAATAGCACATG+AGG 0.593788 6_3:+98039750 Msa0967940:three_prime_UTR
GTTCTGGTAGCTCAGTTCCA+TGG 0.594394 6_3:-98039636 None:intergenic
GAGAGGTGTGAATGCATTAG+GGG 0.595781 6_3:-98038054 None:intergenic
TTATGTCTTTATATCCAACA+TGG 0.599656 6_3:+98037812 Msa0967940:five_prime_UTR
TTAGCATGTCAAACAACTGT+GGG 0.604116 6_3:+98038962 Msa0967940:CDS
TACATTGGAAATAAGTACAA+AGG 0.610804 6_3:+98039723 Msa0967940:three_prime_UTR
TTGTGCTACATGTATGGTAG+AGG 0.614537 6_3:+98038596 Msa0967940:CDS
AAACCGTCCTAGCTATCACC+AGG 0.614689 6_3:-98039503 None:intergenic
AGAACCAAAATTAGAGCAGT+CGG 0.615630 6_3:+98038125 Msa0967940:CDS
TGGTTGAGGTAAATGACACT+TGG 0.617626 6_3:+98039796 Msa0967940:three_prime_UTR
ACTTGATTCAAACTCGACCA+TGG 0.622490 6_3:+98039619 Msa0967940:three_prime_UTR
ACAAATGCAAAACCTATAGA+GGG 0.622761 6_3:-98038200 None:intergenic
GACACTATGTCAGAGTGGCA+AGG 0.634701 6_3:+98039879 Msa0967940:three_prime_UTR
GACTCAGCAGACTCTTTGTG+AGG 0.642468 6_3:+98039198 Msa0967940:CDS
GTGCATTATCGTACAGCTTG+TGG 0.644594 6_3:+98038401 Msa0967940:CDS
CAACAATTACCAGAGTGGAA+AGG 0.648231 6_3:+98039144 Msa0967940:CDS
AAATGCAACGATTGATCACA+AGG 0.650416 6_3:-98039682 None:intergenic
TGAAGCAGATTCTACAGGGG+TGG 0.651914 6_3:+98038985 Msa0967940:CDS
ATGCAAAACCTATAGAGGGA+GGG 0.653145 6_3:-98038196 None:intergenic
AATGCAAAACCTATAGAGGG+AGG 0.655010 6_3:-98038197 None:intergenic
ATTAGCATGTCAAACAACTG+TGG 0.658456 6_3:+98038961 Msa0967940:CDS
TGATTCAACAATTACCAGAG+TGG 0.670303 6_3:+98039139 Msa0967940:CDS
CATTATCGTACAGCTTGTGG+TGG 0.680953 6_3:+98038404 Msa0967940:CDS
CCAAAGACACTATGTCAGAG+TGG 0.685021 6_3:+98039874 Msa0967940:three_prime_UTR
AGGGTCATTAGAGTCACTAG+TGG 0.691443 6_3:-98038177 None:intergenic
AGCACATGAGGAAATGCACG+TGG 0.720914 6_3:+98039762 Msa0967940:three_prime_UTR
GGGTGAAGCAGATTCTACAG+GGG 0.770570 6_3:+98038982 Msa0967940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTTAAGCAATAAT+TGG + chr6_3:98038507-98038526 Msa0967940:intron 10.0%
!!! TTTTTTTTTAATTTGCTATT+AGG + chr6_3:98038701-98038720 Msa0967940:intron 10.0%
!! TAAATTATTTATGATATCAA+AGG + chr6_3:98039993-98040012 Msa0967940:three_prime_UTR 10.0%
!! ATATAATGTAAATATAATTG+TGG + chr6_3:98040023-98040042 Msa0967940:three_prime_UTR 10.0%
!!! TTTTATTTTTAAGCAATAAT+TGG + chr6_3:98038507-98038526 Msa0967940:intron 10.0%
!!! TTTTTTTTTAATTTGCTATT+AGG + chr6_3:98038701-98038720 Msa0967940:intron 10.0%
!! TAAATTATTTATGATATCAA+AGG + chr6_3:98039993-98040012 Msa0967940:three_prime_UTR 10.0%
!! ATATAATGTAAATATAATTG+TGG + chr6_3:98040023-98040042 Msa0967940:three_prime_UTR 10.0%
!! ATTTCATACATTATTCTTTA+TGG + chr6_3:98037856-98037875 Msa0967940:five_prime_UTR 15.0%
!! TTATCTCATATAATTTGAAT+TGG - chr6_3:98037888-98037907 None:intergenic 15.0%
!! CAGATTAGAAATTAATAAAA+TGG + chr6_3:98039042-98039061 Msa0967940:intron 15.0%
!! ATTTCATACATTATTCTTTA+TGG + chr6_3:98037856-98037875 Msa0967940:five_prime_UTR 15.0%
!! TTATCTCATATAATTTGAAT+TGG - chr6_3:98037888-98037907 None:intergenic 15.0%
!! CAGATTAGAAATTAATAAAA+TGG + chr6_3:98039042-98039061 Msa0967940:intron 15.0%
!! TAATTCTACTTATATCTAGT+TGG + chr6_3:98038294-98038313 Msa0967940:intron 20.0%
!!! AATTAATCTCTAATGTTTTG+TGG + chr6_3:98038343-98038362 Msa0967940:intron 20.0%
!!! AGCAAAAATACACATTTTAT+TGG + chr6_3:98038648-98038667 Msa0967940:intron 20.0%
!!! GCAAAAATACACATTTTATT+GGG + chr6_3:98038649-98038668 Msa0967940:intron 20.0%
!!! GTTAGTACTACTAATTTTTT+GGG + chr6_3:98039007-98039026 Msa0967940:intron 20.0%
!! ATTTATGTTGAGCAATATAT+TGG + chr6_3:98039087-98039106 Msa0967940:intron 20.0%
!! ACTATTACACTAAAAATGTA+GGG - chr6_3:98039588-98039607 None:intergenic 20.0%
!! AACTATTACACTAAAAATGT+AGG - chr6_3:98039589-98039608 None:intergenic 20.0%
!! TAATTCTACTTATATCTAGT+TGG + chr6_3:98038294-98038313 Msa0967940:intron 20.0%
!!! AATTAATCTCTAATGTTTTG+TGG + chr6_3:98038343-98038362 Msa0967940:intron 20.0%
!!! AGCAAAAATACACATTTTAT+TGG + chr6_3:98038648-98038667 Msa0967940:intron 20.0%
!!! GCAAAAATACACATTTTATT+GGG + chr6_3:98038649-98038668 Msa0967940:intron 20.0%
!!! GTTAGTACTACTAATTTTTT+GGG + chr6_3:98039007-98039026 Msa0967940:intron 20.0%
!! ATTTATGTTGAGCAATATAT+TGG + chr6_3:98039087-98039106 Msa0967940:intron 20.0%
!! ACTATTACACTAAAAATGTA+GGG - chr6_3:98039588-98039607 None:intergenic 20.0%
!! AACTATTACACTAAAAATGT+AGG - chr6_3:98039589-98039608 None:intergenic 20.0%
! TTATGTCTTTATATCCAACA+TGG + chr6_3:98037812-98037831 Msa0967940:five_prime_UTR 25.0%
! TATATATCTCATATCCATGT+TGG - chr6_3:98037829-98037848 None:intergenic 25.0%
! GTTAGTGAGATAATTACATA+AGG - chr6_3:98038479-98038498 None:intergenic 25.0%
!!! ATTTTGTTGTTGATTTTTCC+AGG + chr6_3:98038539-98038558 Msa0967940:intron 25.0%
!!! TTTTGTTGTTGATTTTTCCA+GGG + chr6_3:98038540-98038559 Msa0967940:intron 25.0%
! AATTTAACAAAATTCTACCC+TGG - chr6_3:98038560-98038579 None:intergenic 25.0%
!! GGTAGAATTTTGTTAAATTG+TGG + chr6_3:98038561-98038580 Msa0967940:CDS 25.0%
!! AGAATTTTGTTAAATTGTGG+AGG + chr6_3:98038564-98038583 Msa0967940:CDS 25.0%
!! GAATTTTGTTAAATTGTGGA+GGG + chr6_3:98038565-98038584 Msa0967940:CDS 25.0%
!! AATTTTGTTAAATTGTGGAG+GGG + chr6_3:98038566-98038585 Msa0967940:CDS 25.0%
! AAGAGAAAGAAAAACTTAAG+AGG + chr6_3:98038763-98038782 Msa0967940:CDS 25.0%
! AGAGAAAGAAAAACTTAAGA+GGG + chr6_3:98038764-98038783 Msa0967940:CDS 25.0%
! CTTTATAGAAACCAAAGAAT+TGG + chr6_3:98038936-98038955 Msa0967940:intron 25.0%
!!! GGTTAGTACTACTAATTTTT+TGG + chr6_3:98039006-98039025 Msa0967940:intron 25.0%
! ACATGAATGGAAATATGAAA+AGG + chr6_3:98039167-98039186 Msa0967940:CDS 25.0%
!!! CATGCAACTTTTTCTATAAA+AGG - chr6_3:98039389-98039408 None:intergenic 25.0%
! CTATTACACTAAAAATGTAG+GGG - chr6_3:98039587-98039606 None:intergenic 25.0%
! TACATTGGAAATAAGTACAA+AGG + chr6_3:98039723-98039742 Msa0967940:three_prime_UTR 25.0%
! TATAATTGTGGTGTATATAG+TGG + chr6_3:98040035-98040054 Msa0967940:three_prime_UTR 25.0%
! ATAATTGTGGTGTATATAGT+GGG + chr6_3:98040036-98040055 Msa0967940:three_prime_UTR 25.0%
! TTATGTCTTTATATCCAACA+TGG + chr6_3:98037812-98037831 Msa0967940:five_prime_UTR 25.0%
! TATATATCTCATATCCATGT+TGG - chr6_3:98037829-98037848 None:intergenic 25.0%
! GTTAGTGAGATAATTACATA+AGG - chr6_3:98038479-98038498 None:intergenic 25.0%
!!! ATTTTGTTGTTGATTTTTCC+AGG + chr6_3:98038539-98038558 Msa0967940:intron 25.0%
!!! TTTTGTTGTTGATTTTTCCA+GGG + chr6_3:98038540-98038559 Msa0967940:intron 25.0%
! AATTTAACAAAATTCTACCC+TGG - chr6_3:98038560-98038579 None:intergenic 25.0%
!! GGTAGAATTTTGTTAAATTG+TGG + chr6_3:98038561-98038580 Msa0967940:CDS 25.0%
!! AGAATTTTGTTAAATTGTGG+AGG + chr6_3:98038564-98038583 Msa0967940:CDS 25.0%
!! GAATTTTGTTAAATTGTGGA+GGG + chr6_3:98038565-98038584 Msa0967940:CDS 25.0%
!! AATTTTGTTAAATTGTGGAG+GGG + chr6_3:98038566-98038585 Msa0967940:CDS 25.0%
! AAGAGAAAGAAAAACTTAAG+AGG + chr6_3:98038763-98038782 Msa0967940:CDS 25.0%
! AGAGAAAGAAAAACTTAAGA+GGG + chr6_3:98038764-98038783 Msa0967940:CDS 25.0%
! CTTTATAGAAACCAAAGAAT+TGG + chr6_3:98038936-98038955 Msa0967940:intron 25.0%
!!! GGTTAGTACTACTAATTTTT+TGG + chr6_3:98039006-98039025 Msa0967940:intron 25.0%
! ACATGAATGGAAATATGAAA+AGG + chr6_3:98039167-98039186 Msa0967940:CDS 25.0%
!!! CATGCAACTTTTTCTATAAA+AGG - chr6_3:98039389-98039408 None:intergenic 25.0%
! CTATTACACTAAAAATGTAG+GGG - chr6_3:98039587-98039606 None:intergenic 25.0%
! TACATTGGAAATAAGTACAA+AGG + chr6_3:98039723-98039742 Msa0967940:three_prime_UTR 25.0%
! TATAATTGTGGTGTATATAG+TGG + chr6_3:98040035-98040054 Msa0967940:three_prime_UTR 25.0%
! ATAATTGTGGTGTATATAGT+GGG + chr6_3:98040036-98040055 Msa0967940:three_prime_UTR 25.0%
AACTAGTGTTATGTTGTTGA+AGG - chr6_3:98037988-98038007 None:intergenic 30.0%
!!! TGGTCTGAATTTTTTATGTG+AGG - chr6_3:98038087-98038106 None:intergenic 30.0%
ACAAATGCAAAACCTATAGA+GGG - chr6_3:98038203-98038222 None:intergenic 30.0%
GATTCTAACATTGAACTCTA+TGG + chr6_3:98038452-98038471 Msa0967940:CDS 30.0%
! ATTTTGTTAAATTGTGGAGG+GGG + chr6_3:98038567-98038586 Msa0967940:CDS 30.0%
!! ATTTGCTATTAGGTTCTTGA+AGG + chr6_3:98038711-98038730 Msa0967940:intron 30.0%
! ATTTTCATTCCATGTGATGT+AGG + chr6_3:98039113-98039132 Msa0967940:intron 30.0%
! AATACACCATTTTCTTGTAG+TGG - chr6_3:98039549-98039568 None:intergenic 30.0%
AAAAATGTAGGGGTAAAGAT+TGG - chr6_3:98039577-98039596 None:intergenic 30.0%
AAGATCTAGTAACAATGTTC+TGG - chr6_3:98039655-98039674 None:intergenic 30.0%
TTATTTCCAATGTACAAGGT+TGG - chr6_3:98039717-98039736 None:intergenic 30.0%
GTACTTATTTCCAATGTACA+AGG - chr6_3:98039721-98039740 None:intergenic 30.0%
!! GGCAAGGATATTTAACTTTT+AGG + chr6_3:98039895-98039914 Msa0967940:three_prime_UTR 30.0%
!! GATATTTAACTTTTAGGCAG+TGG + chr6_3:98039901-98039920 Msa0967940:three_prime_UTR 30.0%
ATAACTTCAGCAAAACTCAA+AGG - chr6_3:98039964-98039983 None:intergenic 30.0%
AACTAGTGTTATGTTGTTGA+AGG - chr6_3:98037988-98038007 None:intergenic 30.0%
!!! TGGTCTGAATTTTTTATGTG+AGG - chr6_3:98038087-98038106 None:intergenic 30.0%
ACAAATGCAAAACCTATAGA+GGG - chr6_3:98038203-98038222 None:intergenic 30.0%
GATTCTAACATTGAACTCTA+TGG + chr6_3:98038452-98038471 Msa0967940:CDS 30.0%
! ATTTTGTTAAATTGTGGAGG+GGG + chr6_3:98038567-98038586 Msa0967940:CDS 30.0%
!! ATTTGCTATTAGGTTCTTGA+AGG + chr6_3:98038711-98038730 Msa0967940:intron 30.0%
! ATTTTCATTCCATGTGATGT+AGG + chr6_3:98039113-98039132 Msa0967940:intron 30.0%
! AATACACCATTTTCTTGTAG+TGG - chr6_3:98039549-98039568 None:intergenic 30.0%
AAAAATGTAGGGGTAAAGAT+TGG - chr6_3:98039577-98039596 None:intergenic 30.0%
AAGATCTAGTAACAATGTTC+TGG - chr6_3:98039655-98039674 None:intergenic 30.0%
TTATTTCCAATGTACAAGGT+TGG - chr6_3:98039717-98039736 None:intergenic 30.0%
GTACTTATTTCCAATGTACA+AGG - chr6_3:98039721-98039740 None:intergenic 30.0%
!! GGCAAGGATATTTAACTTTT+AGG + chr6_3:98039895-98039914 Msa0967940:three_prime_UTR 30.0%
!! GATATTTAACTTTTAGGCAG+TGG + chr6_3:98039901-98039920 Msa0967940:three_prime_UTR 30.0%
ATAACTTCAGCAAAACTCAA+AGG - chr6_3:98039964-98039983 None:intergenic 30.0%
! TGTTGTTGAAGGATTTTGCA+TGG - chr6_3:98037977-98037996 None:intergenic 35.0%
!! CTTGTAAAGAGTGTTGTGTT+TGG - chr6_3:98038107-98038126 None:intergenic 35.0%
AGAACCAAAATTAGAGCAGT+CGG + chr6_3:98038125-98038144 Msa0967940:CDS 35.0%
! TCTCTGAATCCTTCTTTTCA+GGG - chr6_3:98038157-98038176 None:intergenic 35.0%
GACAAATGCAAAACCTATAG+AGG - chr6_3:98038204-98038223 None:intergenic 35.0%
GAAGCTTAGGAACATAATGT+TGG + chr6_3:98038430-98038449 Msa0967940:CDS 35.0%
ATGTGAAATGTGAACTCTTG+TGG + chr6_3:98038879-98038898 Msa0967940:intron 35.0%
CATGCTAATCTCCAATTCTT+TGG - chr6_3:98038950-98038969 None:intergenic 35.0%
ATTAGCATGTCAAACAACTG+TGG + chr6_3:98038961-98038980 Msa0967940:CDS 35.0%
TTAGCATGTCAAACAACTGT+GGG + chr6_3:98038962-98038981 Msa0967940:CDS 35.0%
TGATTCAACAATTACCAGAG+TGG + chr6_3:98039139-98039158 Msa0967940:CDS 35.0%
AAATGCAACGATTGATCACA+AGG - chr6_3:98039685-98039704 None:intergenic 35.0%
! GATCAATCGTTGCATTTTGT+AGG + chr6_3:98039688-98039707 Msa0967940:three_prime_UTR 35.0%
ATAAGCCAAAATAGCACATG+AGG + chr6_3:98039750-98039769 Msa0967940:three_prime_UTR 35.0%
!!! CATTTCCTCATGTGCTATTT+TGG - chr6_3:98039758-98039777 None:intergenic 35.0%
TGGCATAACATAATTGGTTG+AGG + chr6_3:98039782-98039801 Msa0967940:three_prime_UTR 35.0%
!! GATTCTAAGAGCACCAATAT+CGG + chr6_3:98039824-98039843 Msa0967940:three_prime_UTR 35.0%
! TGTTGTTGAAGGATTTTGCA+TGG - chr6_3:98037977-98037996 None:intergenic 35.0%
!! CTTGTAAAGAGTGTTGTGTT+TGG - chr6_3:98038107-98038126 None:intergenic 35.0%
AGAACCAAAATTAGAGCAGT+CGG + chr6_3:98038125-98038144 Msa0967940:CDS 35.0%
! TCTCTGAATCCTTCTTTTCA+GGG - chr6_3:98038157-98038176 None:intergenic 35.0%
GACAAATGCAAAACCTATAG+AGG - chr6_3:98038204-98038223 None:intergenic 35.0%
GAAGCTTAGGAACATAATGT+TGG + chr6_3:98038430-98038449 Msa0967940:CDS 35.0%
ATGTGAAATGTGAACTCTTG+TGG + chr6_3:98038879-98038898 Msa0967940:intron 35.0%
CATGCTAATCTCCAATTCTT+TGG - chr6_3:98038950-98038969 None:intergenic 35.0%
ATTAGCATGTCAAACAACTG+TGG + chr6_3:98038961-98038980 Msa0967940:CDS 35.0%
TTAGCATGTCAAACAACTGT+GGG + chr6_3:98038962-98038981 Msa0967940:CDS 35.0%
TGATTCAACAATTACCAGAG+TGG + chr6_3:98039139-98039158 Msa0967940:CDS 35.0%
AAATGCAACGATTGATCACA+AGG - chr6_3:98039685-98039704 None:intergenic 35.0%
! GATCAATCGTTGCATTTTGT+AGG + chr6_3:98039688-98039707 Msa0967940:three_prime_UTR 35.0%
ATAAGCCAAAATAGCACATG+AGG + chr6_3:98039750-98039769 Msa0967940:three_prime_UTR 35.0%
!!! CATTTCCTCATGTGCTATTT+TGG - chr6_3:98039758-98039777 None:intergenic 35.0%
TGGCATAACATAATTGGTTG+AGG + chr6_3:98039782-98039801 Msa0967940:three_prime_UTR 35.0%
!! GATTCTAAGAGCACCAATAT+CGG + chr6_3:98039824-98039843 Msa0967940:three_prime_UTR 35.0%
TGGAGTGTGTGTTTCATTTG+TGG - chr6_3:98037941-98037960 None:intergenic 40.0%
TGCATGGAATTTGAGCTTAG+TGG - chr6_3:98037961-98037980 None:intergenic 40.0%
!! CATTAGGGGTTAGTTTGAGT+TGG - chr6_3:98038043-98038062 None:intergenic 40.0%
! AGAGAGGTGTGAATGCATTA+GGG - chr6_3:98038058-98038077 None:intergenic 40.0%
TTATGTGAGGAAGAAGAGAG+AGG - chr6_3:98038074-98038093 None:intergenic 40.0%
! GTCTCTGAATCCTTCTTTTC+AGG - chr6_3:98038158-98038177 None:intergenic 40.0%
ATGCAAAACCTATAGAGGGA+GGG - chr6_3:98038199-98038218 None:intergenic 40.0%
AATGCAAAACCTATAGAGGG+AGG - chr6_3:98038200-98038219 None:intergenic 40.0%
TGGAACTTGTGCTACATGTA+TGG + chr6_3:98038590-98038609 Msa0967940:CDS 40.0%
TTGTGCTACATGTATGGTAG+AGG + chr6_3:98038596-98038615 Msa0967940:CDS 40.0%
CTATTAGGTTCTTGAAGGCA+AGG + chr6_3:98038716-98038735 Msa0967940:intron 40.0%
GAATCACAACCTACATCACA+TGG - chr6_3:98039125-98039144 None:intergenic 40.0%
CAACAATTACCAGAGTGGAA+AGG + chr6_3:98039144-98039163 Msa0967940:CDS 40.0%
AATCTTGTGCTTCTTGATCC+TGG + chr6_3:98039485-98039504 Msa0967940:three_prime_UTR 40.0%
!! GATAGCTAGGACGGTTTTAT+AGG + chr6_3:98039509-98039528 Msa0967940:three_prime_UTR 40.0%
!!! CCATTTTCTTGTAGTGGACA+AGG - chr6_3:98039543-98039562 None:intergenic 40.0%
CCTTGTCCACTACAAGAAAA+TGG + chr6_3:98039540-98039559 Msa0967940:three_prime_UTR 40.0%
ATGGTCGAGTTTGAATCAAG+TGG - chr6_3:98039620-98039639 None:intergenic 40.0%
ACTTGATTCAAACTCGACCA+TGG + chr6_3:98039619-98039638 Msa0967940:three_prime_UTR 40.0%
AGGATTCCAACCTTGTACAT+TGG + chr6_3:98039708-98039727 Msa0967940:three_prime_UTR 40.0%
TGCACGTGGCATAACATAAT+TGG + chr6_3:98039776-98039795 Msa0967940:three_prime_UTR 40.0%
TGGTTGAGGTAAATGACACT+TGG + chr6_3:98039796-98039815 Msa0967940:three_prime_UTR 40.0%
! CACCAATATCGGTTGACTAT+TGG + chr6_3:98039835-98039854 Msa0967940:three_prime_UTR 40.0%
CACCAATAGTCAACCGATAT+TGG - chr6_3:98039840-98039859 None:intergenic 40.0%
CACTCTGACATAGTGTCTTT+GGG - chr6_3:98039876-98039895 None:intergenic 40.0%
ATCGTTGCTCTGTAATGCTA+CGG + chr6_3:98039936-98039955 Msa0967940:three_prime_UTR 40.0%
TGGAGTGTGTGTTTCATTTG+TGG - chr6_3:98037941-98037960 None:intergenic 40.0%
TGCATGGAATTTGAGCTTAG+TGG - chr6_3:98037961-98037980 None:intergenic 40.0%
!! CATTAGGGGTTAGTTTGAGT+TGG - chr6_3:98038043-98038062 None:intergenic 40.0%
! AGAGAGGTGTGAATGCATTA+GGG - chr6_3:98038058-98038077 None:intergenic 40.0%
TTATGTGAGGAAGAAGAGAG+AGG - chr6_3:98038074-98038093 None:intergenic 40.0%
! GTCTCTGAATCCTTCTTTTC+AGG - chr6_3:98038158-98038177 None:intergenic 40.0%
ATGCAAAACCTATAGAGGGA+GGG - chr6_3:98038199-98038218 None:intergenic 40.0%
AATGCAAAACCTATAGAGGG+AGG - chr6_3:98038200-98038219 None:intergenic 40.0%
TGGAACTTGTGCTACATGTA+TGG + chr6_3:98038590-98038609 Msa0967940:CDS 40.0%
TTGTGCTACATGTATGGTAG+AGG + chr6_3:98038596-98038615 Msa0967940:CDS 40.0%
CTATTAGGTTCTTGAAGGCA+AGG + chr6_3:98038716-98038735 Msa0967940:intron 40.0%
GAATCACAACCTACATCACA+TGG - chr6_3:98039125-98039144 None:intergenic 40.0%
CAACAATTACCAGAGTGGAA+AGG + chr6_3:98039144-98039163 Msa0967940:CDS 40.0%
AATCTTGTGCTTCTTGATCC+TGG + chr6_3:98039485-98039504 Msa0967940:three_prime_UTR 40.0%
!! GATAGCTAGGACGGTTTTAT+AGG + chr6_3:98039509-98039528 Msa0967940:three_prime_UTR 40.0%
!!! CCATTTTCTTGTAGTGGACA+AGG - chr6_3:98039543-98039562 None:intergenic 40.0%
CCTTGTCCACTACAAGAAAA+TGG + chr6_3:98039540-98039559 Msa0967940:three_prime_UTR 40.0%
ATGGTCGAGTTTGAATCAAG+TGG - chr6_3:98039620-98039639 None:intergenic 40.0%
ACTTGATTCAAACTCGACCA+TGG + chr6_3:98039619-98039638 Msa0967940:three_prime_UTR 40.0%
AGGATTCCAACCTTGTACAT+TGG + chr6_3:98039708-98039727 Msa0967940:three_prime_UTR 40.0%
TGCACGTGGCATAACATAAT+TGG + chr6_3:98039776-98039795 Msa0967940:three_prime_UTR 40.0%
TGGTTGAGGTAAATGACACT+TGG + chr6_3:98039796-98039815 Msa0967940:three_prime_UTR 40.0%
! CACCAATATCGGTTGACTAT+TGG + chr6_3:98039835-98039854 Msa0967940:three_prime_UTR 40.0%
CACCAATAGTCAACCGATAT+TGG - chr6_3:98039840-98039859 None:intergenic 40.0%
CACTCTGACATAGTGTCTTT+GGG - chr6_3:98039876-98039895 None:intergenic 40.0%
ATCGTTGCTCTGTAATGCTA+CGG + chr6_3:98039936-98039955 Msa0967940:three_prime_UTR 40.0%
!! TAGGGGTTAGTTTGAGTTGG+AGG - chr6_3:98038040-98038059 None:intergenic 45.0%
! GAGAGGTGTGAATGCATTAG+GGG - chr6_3:98038057-98038076 None:intergenic 45.0%
! GAGAGAGGTGTGAATGCATT+AGG - chr6_3:98038059-98038078 None:intergenic 45.0%
!!! AGTGCCGACTGCTCTAATTT+TGG - chr6_3:98038132-98038151 None:intergenic 45.0%
AGGGTCATTAGAGTCACTAG+TGG - chr6_3:98038180-98038199 None:intergenic 45.0%
TCTAATGACCCTCCCTCTAT+AGG + chr6_3:98038188-98038207 Msa0967940:CDS 45.0%
! TAGTCTGTGTTGCTACCAGA+TGG + chr6_3:98038368-98038387 Msa0967940:intron 45.0%
GCTGTACGATAATGCACATC+TGG - chr6_3:98038398-98038417 None:intergenic 45.0%
GTGCATTATCGTACAGCTTG+TGG + chr6_3:98038401-98038420 Msa0967940:CDS 45.0%
CATTATCGTACAGCTTGTGG+TGG + chr6_3:98038404-98038423 Msa0967940:CDS 45.0%
TTGTTAAATTGTGGAGGGGG+TGG + chr6_3:98038570-98038589 Msa0967940:CDS 45.0%
TCTTTCTCTTTGTCAGTGCG+AGG - chr6_3:98038753-98038772 None:intergenic 45.0%
TGGGTGAAGCAGATTCTACA+GGG + chr6_3:98038981-98039000 Msa0967940:CDS 45.0%
CATTCATGTCCTTTCCACTC+TGG - chr6_3:98039156-98039175 None:intergenic 45.0%
CAGAGTGGAAAGGACATGAA+TGG + chr6_3:98039154-98039173 Msa0967940:CDS 45.0%
TCTTGATCCTGGTGATAGCT+AGG + chr6_3:98039496-98039515 Msa0967940:three_prime_UTR 45.0%
CCACTCTGACATAGTGTCTT+TGG - chr6_3:98039877-98039896 None:intergenic 45.0%
CCAAAGACACTATGTCAGAG+TGG + chr6_3:98039874-98039893 Msa0967940:three_prime_UTR 45.0%
!! TAGGGGTTAGTTTGAGTTGG+AGG - chr6_3:98038040-98038059 None:intergenic 45.0%
! GAGAGGTGTGAATGCATTAG+GGG - chr6_3:98038057-98038076 None:intergenic 45.0%
! GAGAGAGGTGTGAATGCATT+AGG - chr6_3:98038059-98038078 None:intergenic 45.0%
!!! AGTGCCGACTGCTCTAATTT+TGG - chr6_3:98038132-98038151 None:intergenic 45.0%
AGGGTCATTAGAGTCACTAG+TGG - chr6_3:98038180-98038199 None:intergenic 45.0%
TCTAATGACCCTCCCTCTAT+AGG + chr6_3:98038188-98038207 Msa0967940:CDS 45.0%
! TAGTCTGTGTTGCTACCAGA+TGG + chr6_3:98038368-98038387 Msa0967940:intron 45.0%
GCTGTACGATAATGCACATC+TGG - chr6_3:98038398-98038417 None:intergenic 45.0%
GTGCATTATCGTACAGCTTG+TGG + chr6_3:98038401-98038420 Msa0967940:CDS 45.0%
CATTATCGTACAGCTTGTGG+TGG + chr6_3:98038404-98038423 Msa0967940:CDS 45.0%
TTGTTAAATTGTGGAGGGGG+TGG + chr6_3:98038570-98038589 Msa0967940:CDS 45.0%
TCTTTCTCTTTGTCAGTGCG+AGG - chr6_3:98038753-98038772 None:intergenic 45.0%
TGGGTGAAGCAGATTCTACA+GGG + chr6_3:98038981-98039000 Msa0967940:CDS 45.0%
CATTCATGTCCTTTCCACTC+TGG - chr6_3:98039156-98039175 None:intergenic 45.0%
CAGAGTGGAAAGGACATGAA+TGG + chr6_3:98039154-98039173 Msa0967940:CDS 45.0%
TCTTGATCCTGGTGATAGCT+AGG + chr6_3:98039496-98039515 Msa0967940:three_prime_UTR 45.0%
CCACTCTGACATAGTGTCTT+TGG - chr6_3:98039877-98039896 None:intergenic 45.0%
CCAAAGACACTATGTCAGAG+TGG + chr6_3:98039874-98039893 Msa0967940:three_prime_UTR 45.0%
TGCACATCTGGTGTTCCATC+TGG - chr6_3:98038386-98038405 None:intergenic 50.0%
!! CTTGTGGTGGACAGAAGCTT+AGG + chr6_3:98038417-98038436 Msa0967940:CDS 50.0%
GTGGGTGAAGCAGATTCTAC+AGG + chr6_3:98038980-98038999 Msa0967940:CDS 50.0%
GGGTGAAGCAGATTCTACAG+GGG + chr6_3:98038982-98039001 Msa0967940:CDS 50.0%
TGAAGCAGATTCTACAGGGG+TGG + chr6_3:98038985-98039004 Msa0967940:CDS 50.0%
GACTCAGCAGACTCTTTGTG+AGG + chr6_3:98039198-98039217 Msa0967940:CDS 50.0%
GATCCTGGTGATAGCTAGGA+CGG + chr6_3:98039500-98039519 Msa0967940:three_prime_UTR 50.0%
AAACCGTCCTAGCTATCACC+AGG - chr6_3:98039506-98039525 None:intergenic 50.0%
GTTCTGGTAGCTCAGTTCCA+TGG - chr6_3:98039639-98039658 None:intergenic 50.0%
AGCACATGAGGAAATGCACG+TGG + chr6_3:98039762-98039781 Msa0967940:three_prime_UTR 50.0%
GACACTATGTCAGAGTGGCA+AGG + chr6_3:98039879-98039898 Msa0967940:three_prime_UTR 50.0%
TGCACATCTGGTGTTCCATC+TGG - chr6_3:98038386-98038405 None:intergenic 50.0%
!! CTTGTGGTGGACAGAAGCTT+AGG + chr6_3:98038417-98038436 Msa0967940:CDS 50.0%
GTGGGTGAAGCAGATTCTAC+AGG + chr6_3:98038980-98038999 Msa0967940:CDS 50.0%
GGGTGAAGCAGATTCTACAG+GGG + chr6_3:98038982-98039001 Msa0967940:CDS 50.0%
TGAAGCAGATTCTACAGGGG+TGG + chr6_3:98038985-98039004 Msa0967940:CDS 50.0%
GACTCAGCAGACTCTTTGTG+AGG + chr6_3:98039198-98039217 Msa0967940:CDS 50.0%
GATCCTGGTGATAGCTAGGA+CGG + chr6_3:98039500-98039519 Msa0967940:three_prime_UTR 50.0%
AAACCGTCCTAGCTATCACC+AGG - chr6_3:98039506-98039525 None:intergenic 50.0%
GTTCTGGTAGCTCAGTTCCA+TGG - chr6_3:98039639-98039658 None:intergenic 50.0%
AGCACATGAGGAAATGCACG+TGG + chr6_3:98039762-98039781 Msa0967940:three_prime_UTR 50.0%
GACACTATGTCAGAGTGGCA+AGG + chr6_3:98039879-98039898 Msa0967940:three_prime_UTR 50.0%
CGGCACTGTCCCTGAAAAGA+AGG + chr6_3:98038145-98038164 Msa0967940:CDS 55.0%
CGGCACTGTCCCTGAAAAGA+AGG + chr6_3:98038145-98038164 Msa0967940:CDS 55.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 98037810 98040075 98037810 ID=Msa0967940;Name=Msa0967940
chr6_3 mRNA 98037810 98040075 98037810 ID=Msa0967940-mRNA-1;Parent=Msa0967940;Name=Msa0967940-mRNA-1;_AED=0.10;_eAED=0.10;_QI=219|1|1|1|1|1|6|857|191
chr6_3 exon 98037810 98038226 98037810 ID=Msa0967940-mRNA-1:exon:18284;Parent=Msa0967940-mRNA-1
chr6_3 exon 98038371 98038481 98038371 ID=Msa0967940-mRNA-1:exon:18285;Parent=Msa0967940-mRNA-1
chr6_3 exon 98038561 98038617 98038561 ID=Msa0967940-mRNA-1:exon:18286;Parent=Msa0967940-mRNA-1
chr6_3 exon 98038723 98038785 98038723 ID=Msa0967940-mRNA-1:exon:18287;Parent=Msa0967940-mRNA-1
chr6_3 exon 98038944 98039006 98038944 ID=Msa0967940-mRNA-1:exon:18288;Parent=Msa0967940-mRNA-1
chr6_3 exon 98039135 98040075 98039135 ID=Msa0967940-mRNA-1:exon:18289;Parent=Msa0967940-mRNA-1
chr6_3 five_prime_UTR 98037810 98038028 98037810 ID=Msa0967940-mRNA-1:five_prime_utr;Parent=Msa0967940-mRNA-1
chr6_3 CDS 98038029 98038226 98038029 ID=Msa0967940-mRNA-1:cds;Parent=Msa0967940-mRNA-1
chr6_3 CDS 98038371 98038481 98038371 ID=Msa0967940-mRNA-1:cds;Parent=Msa0967940-mRNA-1
chr6_3 CDS 98038561 98038617 98038561 ID=Msa0967940-mRNA-1:cds;Parent=Msa0967940-mRNA-1
chr6_3 CDS 98038723 98038785 98038723 ID=Msa0967940-mRNA-1:cds;Parent=Msa0967940-mRNA-1
chr6_3 CDS 98038944 98039006 98038944 ID=Msa0967940-mRNA-1:cds;Parent=Msa0967940-mRNA-1
chr6_3 CDS 98039135 98039218 98039135 ID=Msa0967940-mRNA-1:cds;Parent=Msa0967940-mRNA-1
chr6_3 three_prime_UTR 98039219 98040075 98039219 ID=Msa0967940-mRNA-1:three_prime_utr;Parent=Msa0967940-mRNA-1
Gene Sequence

>Msa0967940

ATGTCACTCCTCCAACTCAAACTAACCCCTAATGCATTCACACCTCTCTCTTCTTCCTCACATAAAAAATTCAGACCAAACACAACACTCTTTACAAGAACCAAAATTAGAGCAGTCGGCACTGTCCCTGAAAAGAAGGATTCAGAGACCACTAGTGACTCTAATGACCCTCCCTCTATAGGTTTTGCATTTGTCAGTTCTGTGTTGCTACCAGATGGAACACCAGATGTGCATTATCGTACAGCTTGTGGTGGACAGAAGCTTAGGAACATAATGTTGGATTCTAACATTGAACTCTATGGACCTTATGGTAGAATTTTGTTAAATTGTGGAGGGGGTGGAACTTGTGCTACATGTATGGTAGAGGTTCTTGAAGGCAAGGAGCTTCTGAGTCCTCGCACTGACAAAGAGAAAGAAAAACTTAAGAGGAAACCAAAGAATTGGAGATTAGCATGTCAAACAACTGTGGGTGAAGCAGATTCTACAGGGGTGGTTGTGATTCAACAATTACCAGAGTGGAAAGGACATGAATGGAAATATGAAAAGGATGATGATGACTCAGCAGACTCTTTGTGA

Protein sequence

>Msa0967940

MSLLQLKLTPNAFTPLSSSSHKKFRPNTTLFTRTKIRAVGTVPEKKDSETTSDSNDPPSIGFAFVSSVLLPDGTPDVHYRTACGGQKLRNIMLDSNIELYGPYGRILLNCGGGGTCATCMVEVLEGKELLSPRTDKEKEKLKRKPKNWRLACQTTVGEADSTGVVVIQQLPEWKGHEWKYEKDDDDSADSL*