AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0798230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0798230 MtrunA17_Chr5g0402571 97.853 326 7 0 1 326 1 326 0.0 658
Msa0798230 MtrunA17_Chr5g0402581 92.025 326 26 0 1 326 1 326 0.0 627
Msa0798230 MtrunA17_Chr4g0070951 52.322 323 143 5 9 326 13 329 8.67e-110 322
Msa0798230 MtrunA17_Chr7g0258811 51.534 326 153 4 5 326 47 371 3.35e-109 322
Msa0798230 MtrunA17_Chr3g0129051 51.713 321 143 4 11 326 9 322 4.73e-109 320
Msa0798230 MtrunA17_Chr2g0320071 51.411 319 146 3 9 326 7 317 6.83e-109 320
Msa0798230 MtrunA17_Chr2g0320101 51.212 330 144 5 1 326 1 317 2.39e-108 318
Msa0798230 MtrunA17_Chr1g0175561 51.562 320 149 5 11 326 9 326 3.16e-108 318
Msa0798230 MtrunA17_Chr2g0320051 52.848 316 136 5 16 326 11 318 3.16e-106 313
Msa0798230 MtrunA17_Chr2g0320061 51.360 331 143 6 1 326 1 318 3.52e-106 313
Msa0798230 MtrunA17_Chr2g0292211 50.820 305 146 3 25 326 38 341 1.09e-105 313
Msa0798230 MtrunA17_Chr5g0432441 49.536 323 152 3 8 326 11 326 2.88e-104 308
Msa0798230 MtrunA17_Chr7g0244451 49.383 324 151 5 4 326 5 316 7.91e-104 306
Msa0798230 MtrunA17_Chr4g0043391 48.182 330 161 5 1 326 1 324 1.54e-103 306
Msa0798230 MtrunA17_Chr2g0320091 49.216 319 151 3 12 326 7 318 1.91e-103 306
Msa0798230 MtrunA17_Chr2g0292091 49.843 319 155 4 11 326 9 325 4.72e-103 306
Msa0798230 MtrunA17_Chr4g0038171 49.843 319 150 5 12 326 9 321 8.32e-103 304
Msa0798230 MtrunA17_Chr5g0404721 52.318 302 141 3 27 326 30 330 2.01e-102 303
Msa0798230 MtrunA17_Chr2g0292241 50.000 306 147 4 25 326 27 330 2.25e-102 304
Msa0798230 MtrunA17_Chr5g0438021 47.866 328 160 4 3 326 5 325 5.36e-102 302
Msa0798230 MtrunA17_Chr2g0292101 50.157 319 154 4 11 326 10 326 5.96e-102 303
Msa0798230 MtrunA17_Chr4g0038161 47.853 326 161 4 4 326 1 320 6.81e-102 302
Msa0798230 MtrunA17_Chr4g0038151 48.457 324 157 5 7 326 4 321 9.14e-102 301
Msa0798230 MtrunA17_Chr2g0299691 51.325 302 138 4 31 326 60 358 1.23e-101 303
Msa0798230 MtrunA17_Chr2g0292181 49.508 305 150 3 25 326 36 339 2.68e-101 302
Msa0798230 MtrunA17_Chr2g0292251 48.852 305 152 3 25 326 26 329 4.58e-101 301
Msa0798230 MtrunA17_Chr2g0291751 48.024 329 163 5 5 326 3 330 2.55e-100 299
Msa0798230 MtrunA17_Chr3g0129061 50.157 319 147 4 13 326 11 322 7.35e-100 297
Msa0798230 MtrunA17_Chr7g0244461 48.287 321 154 4 7 326 3 312 1.68e-99 295
Msa0798230 MtrunA17_Chr3g0106921 46.875 320 160 3 10 326 8 320 1.85e-99 296
Msa0798230 MtrunA17_Chr2g0320031 48.598 321 151 5 12 326 7 319 2.71e-99 295
Msa0798230 MtrunA17_Chr2g0292271 47.962 319 158 4 15 326 13 330 8.85e-99 295
Msa0798230 MtrunA17_Chr8g0372601 49.841 315 153 4 14 326 19 330 2.09e-98 293
Msa0798230 MtrunA17_Chr3g0114451 47.826 322 155 4 10 326 5 318 7.34e-98 291
Msa0798230 MtrunA17_Chr4g0068621 50.000 304 147 4 25 326 36 336 1.26e-97 291
Msa0798230 MtrunA17_Chr2g0292291 48.197 305 155 2 25 326 28 332 1.34e-97 292
Msa0798230 MtrunA17_Chr2g0292261 49.508 305 150 3 25 326 27 330 3.77e-97 291
Msa0798230 MtrunA17_Chr4g0013181 49.000 300 142 4 30 326 62 353 5.69e-97 290
Msa0798230 MtrunA17_Chr4g0013171 45.897 329 164 5 4 326 1 321 1.65e-96 288
Msa0798230 MtrunA17_Chr2g0292151 49.673 306 148 4 25 326 27 330 3.49e-96 288
Msa0798230 MtrunA17_Chr3g0129041 49.216 319 150 4 13 326 11 322 1.88e-95 285
Msa0798230 MtrunA17_Chr1g0213061 45.000 320 161 5 14 326 10 321 1.86e-93 281
Msa0798230 MtrunA17_Chr1g0155611 50.667 300 144 3 30 326 49 347 1.91e-93 281
Msa0798230 MtrunA17_Chr2g0322861 44.969 318 169 5 11 326 73 386 4.19e-93 282
Msa0798230 MtrunA17_Chr4g0013201 48.185 303 148 3 25 326 44 338 7.03e-93 280
Msa0798230 MtrunA17_Chr4g0024121 42.813 327 185 2 1 326 1 326 1.01e-92 279
Msa0798230 MtrunA17_Chr2g0292111 47.386 306 155 4 25 326 27 330 3.44e-92 278
Msa0798230 MtrunA17_Chr3g0106901 47.516 322 160 3 6 326 10 323 4.77e-91 274
Msa0798230 MtrunA17_Chr4g0013191 47.588 311 153 4 19 326 37 340 6.08e-90 272
Msa0798230 MtrunA17_Chr5g0432341 49.074 324 148 10 9 326 9 321 1.14e-89 271
Msa0798230 MtrunA17_Chr5g0432351 48.765 324 149 10 9 326 9 321 1.74e-89 270
Msa0798230 MtrunA17_Chr7g0224371 48.148 297 144 4 31 326 35 322 2.87e-88 267
Msa0798230 MtrunA17_Chr5g0432331 48.297 323 150 11 10 326 41 352 4.19e-88 268
Msa0798230 MtrunA17_Chr1g0204011 40.798 326 189 3 1 326 1 322 5.87e-88 266
Msa0798230 MtrunA17_Chr2g0279041 43.939 330 176 4 1 326 1 325 1.73e-86 263
Msa0798230 MtrunA17_Chr5g0400331 46.278 309 154 5 27 326 26 331 2.65e-86 263
Msa0798230 MtrunA17_Chr4g0013721 46.205 303 158 3 25 326 98 396 7.92e-85 261
Msa0798230 MtrunA17_Chr4g0076211 43.581 296 158 4 32 326 46 333 8.20e-85 259
Msa0798230 MtrunA17_Chr3g0128061 43.396 318 177 3 11 326 10 326 1.91e-84 258
Msa0798230 MtrunA17_Chr5g0421411 46.643 283 144 5 50 326 4 285 3.32e-83 253
Msa0798230 MtrunA17_Chr6g0477071 43.046 302 161 4 25 326 52 342 6.32e-83 254
Msa0798230 MtrunA17_Chr7g0254201 44.118 306 164 4 21 326 14 312 1.02e-82 253
Msa0798230 MtrunA17_Chr5g0405991 42.812 320 175 5 9 326 3 316 1.09e-82 253
Msa0798230 MtrunA17_Chr4g0063671 42.633 319 173 4 13 326 7 320 1.34e-82 253
Msa0798230 MtrunA17_Chr8g0371381 43.667 300 163 4 27 326 26 319 6.20e-82 251
Msa0798230 MtrunA17_Chr4g0013821 42.284 324 180 5 5 326 6 324 8.77e-82 251
Msa0798230 MtrunA17_Chr1g0157051 43.849 317 172 4 9 325 7 317 1.05e-81 250
Msa0798230 MtrunA17_Chr6g0460711 42.138 318 178 4 9 326 3 314 1.28e-81 250
Msa0798230 MtrunA17_Chr7g0268501 43.533 317 171 6 11 326 11 320 4.17e-81 249
Msa0798230 MtrunA17_Chr7g0268521 43.533 317 171 6 11 326 11 320 4.17e-81 249
Msa0798230 MtrunA17_Chr2g0296621 42.857 301 162 4 27 326 50 341 2.08e-79 245
Msa0798230 MtrunA17_Chr1g0188431 39.394 330 181 5 5 326 9 327 2.24e-79 244
Msa0798230 MtrunA17_Chr6g0467161 44.013 309 159 6 21 326 39 336 3.20e-79 244
Msa0798230 MtrunA17_Chr3g0107881 44.172 326 168 7 7 326 7 324 1.24e-78 243
Msa0798230 MtrunA17_Chr2g0278671 42.020 307 168 5 25 326 22 323 3.26e-77 239
Msa0798230 MtrunA17_Chr1g0148021 40.187 321 186 4 10 326 10 328 3.16e-76 236
Msa0798230 MtrunA17_Chr1g0197411 39.938 323 187 6 10 326 9 330 1.41e-74 233
Msa0798230 MtrunA17_Chr6g0467121 43.182 308 161 5 21 326 68 363 4.21e-74 233
Msa0798230 MtrunA17_Chr1g0194151 39.697 330 195 4 1 326 4 333 5.54e-74 231
Msa0798230 MtrunA17_Chr1g0164891 42.000 300 170 4 31 326 93 392 9.04e-73 230
Msa0798230 MtrunA17_Chr7g0225221 40.523 306 168 5 26 326 24 320 1.23e-72 227
Msa0798230 MtrunA17_Chr7g0254231 40.667 300 168 4 27 326 22 311 2.59e-71 223
Msa0798230 MtrunA17_Chr1g0194271 38.757 338 194 5 1 326 4 340 2.82e-71 224
Msa0798230 MtrunA17_Chr5g0432401 43.114 334 132 11 1 325 1 285 9.85e-70 219
Msa0798230 MtrunA17_Chr4g0046131 37.353 340 192 6 4 322 3 342 1.02e-69 221
Msa0798230 MtrunA17_Chr2g0279061 45.769 260 132 4 71 326 12 266 5.36e-67 211
Msa0798230 MtrunA17_Chr5g0401431 35.692 325 197 6 11 325 6 328 5.59e-67 213
Msa0798230 MtrunA17_Chr2g0329641 40.196 306 173 5 26 326 35 335 1.70e-66 212
Msa0798230 MtrunA17_Chr4g0072091 39.869 306 174 6 26 326 23 323 7.47e-66 210
Msa0798230 MtrunA17_Chr3g0136751 38.462 325 192 5 5 326 3 322 1.39e-65 209
Msa0798230 MtrunA17_Chr8g0364291 36.923 325 201 4 4 326 2 324 1.69e-65 209
Msa0798230 MtrunA17_Chr6g0467251 39.610 308 175 4 21 326 30 328 4.35e-65 209
Msa0798230 MtrunA17_Chr2g0316791 36.364 330 177 6 25 322 74 402 1.58e-63 206
Msa0798230 MtrunA17_Chr2g0316481 36.667 330 176 6 25 322 74 402 3.10e-63 206
Msa0798230 MtrunA17_Chr2g0316831 36.061 330 178 6 25 322 110 438 4.56e-62 204
Msa0798230 MtrunA17_Chr2g0316191 35.650 331 179 6 25 322 74 403 1.07e-61 202
Msa0798230 MtrunA17_Chr4g0053871 37.224 317 187 6 10 322 12 320 4.45e-61 197
Msa0798230 MtrunA17_Chr5g0413051 36.859 312 180 6 26 326 72 377 1.28e-60 198
Msa0798230 MtrunA17_Chr6g0451571 33.951 324 201 5 10 326 17 334 3.07e-59 193
Msa0798230 MtrunA17_Chr2g0311251 36.336 333 178 8 25 325 9 339 3.61e-59 193
Msa0798230 MtrunA17_Chr2g0311241 33.422 374 174 8 25 325 58 429 7.19e-59 195
Msa0798230 MtrunA17_Chr4g0075241 35.314 303 191 4 26 326 28 327 1.27e-58 191
Msa0798230 MtrunA17_Chr1g0181511 32.680 306 195 5 25 326 25 323 1.11e-49 168
Msa0798230 MtrunA17_Chr1g0181481 33.442 308 190 5 25 326 25 323 1.39e-47 162
Msa0798230 MtrunA17_Chr4g0074851 32.343 303 196 4 27 326 32 328 5.31e-47 161
Msa0798230 MtrunA17_Chr1g0181431 32.459 305 197 4 25 326 25 323 5.65e-47 161
Msa0798230 MtrunA17_Chr2g0316811 37.398 246 133 5 25 252 48 290 7.81e-47 161
Msa0798230 MtrunA17_Chr4g0004591 31.562 320 157 6 27 325 77 355 1.15e-45 158
Msa0798230 MtrunA17_Chr2g0292281 41.905 210 108 4 120 326 18 216 9.67e-44 150
Msa0798230 MtrunA17_Chr3g0114491 60.550 109 43 0 26 134 17 125 1.24e-41 141
Msa0798230 MtrunA17_Chr3g0114461 41.579 190 101 4 139 326 11 192 7.58e-40 138
Msa0798230 MtrunA17_Chr2g0316141 32.292 288 142 8 73 326 11 279 6.27e-38 136
Msa0798230 MtrunA17_Chr2g0316181 32.292 288 142 8 73 326 11 279 6.27e-38 136
Msa0798230 MtrunA17_Chr5g0432321 44.000 125 60 4 148 271 17 132 4.64e-23 92.8
Msa0798230 MtrunA17_Chr1g0181491 39.286 112 66 2 25 136 10 119 4.99e-21 87.8
Msa0798230 MtrunA17_Chr6g0468731 59.155 71 25 2 66 136 22 88 2.60e-20 84.0
Msa0798230 MtrunA17_Chr7g0254181 42.553 94 52 1 99 192 31 122 1.97e-19 83.6
Msa0798230 MtrunA17_Chr3g0104101 34.507 142 87 4 190 326 9 149 1.18e-18 81.3
Msa0798230 MtrunA17_Chr2g0316771 27.746 173 96 2 179 322 10 182 3.70e-16 75.5
Msa0798230 MtrunA17_Chr1g0196191 54.286 70 31 1 65 134 23 91 1.68e-15 72.8
Msa0798230 MtrunA17_Chr1g0181501 31.915 188 109 6 147 326 13 189 2.17e-15 73.6
Msa0798230 MtrunA17_Chr5g0432361 47.191 89 44 3 239 325 21 108 2.05e-14 68.6
Msa0798230 MtrunA17_Chr7g0268491 41.667 84 48 1 243 326 15 97 4.53e-14 67.4
Msa0798230 MtrunA17_Chr7g0254171 45.205 73 39 1 73 145 4 75 2.99e-13 66.2
Msa0798230 MtrunA17_Chr4g0013811 38.889 72 43 1 139 209 7 78 9.32e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0798230 AT1G49570.1 63.696 303 107 2 23 322 44 346 4.60e-135 387
Msa0798230 AT5G19890.1 54.740 327 138 4 4 326 7 327 1.20e-117 342
Msa0798230 AT5G06730.1 55.229 306 131 4 25 326 31 334 3.93e-113 332
Msa0798230 AT5G06720.1 50.464 323 152 4 11 326 12 333 2.53e-107 317
Msa0798230 AT4G36430.1 49.175 303 151 3 26 326 29 330 7.90e-104 308
Msa0798230 AT2G18150.1 46.061 330 164 4 10 326 8 336 2.93e-102 304
Msa0798230 AT2G38390.1 49.051 316 156 4 15 326 19 333 1.55e-100 300
Msa0798230 AT5G05340.1 47.231 307 153 3 22 326 25 324 6.52e-99 295
Msa0798230 AT1G44970.1 51.475 305 144 3 25 326 43 346 7.69e-99 295
Msa0798230 AT2G18140.1 48.344 302 153 3 27 326 35 335 3.21e-98 293
Msa0798230 AT3G32980.1 47.950 317 159 4 15 326 19 334 9.16e-96 288
Msa0798230 AT3G49120.1 46.749 323 166 4 9 326 14 335 3.75e-95 286
Msa0798230 AT1G14550.1 45.794 321 163 5 10 326 8 321 9.37e-95 284
Msa0798230 AT5G58400.1 44.880 332 170 4 1 326 1 325 3.20e-93 280
Msa0798230 AT3G49110.1 46.749 323 166 4 9 326 15 336 6.18e-93 281
Msa0798230 AT1G68850.1 44.892 323 170 6 11 326 14 335 1.05e-92 279
Msa0798230 AT2G38380.1 47.188 320 164 4 11 326 15 333 1.62e-92 279
Msa0798230 AT4G16270.1 48.675 302 150 4 27 326 50 348 6.71e-92 278
Msa0798230 AT5G19880.1 46.809 329 167 6 4 326 3 329 1.10e-91 276
Msa0798230 AT1G14540.1 46.203 316 158 5 16 326 7 315 1.36e-91 276
Msa0798230 AT4G08780.1 47.419 310 157 4 22 326 19 327 1.55e-91 277
Msa0798230 AT3G03670.1 44.923 325 170 4 6 326 2 321 8.11e-91 274
Msa0798230 AT4G08770.1 47.742 310 156 4 22 326 19 327 9.83e-91 275
Msa0798230 AT5G66390.1 44.073 329 173 5 8 326 6 333 2.13e-90 273
Msa0798230 AT1G05260.1 43.769 329 178 7 1 326 1 325 1.21e-89 271
Msa0798230 AT5G15180.1 45.370 324 161 7 15 326 10 329 1.74e-89 271
Msa0798230 AT3G50990.1 45.511 323 170 4 9 326 20 341 2.53e-89 271
Msa0798230 AT5G51890.1 41.304 322 186 2 5 326 4 322 6.46e-89 269
Msa0798230 AT3G01190.1 45.511 323 170 6 5 326 4 321 1.24e-88 268
Msa0798230 AT5G58390.1 46.082 319 162 3 11 326 5 316 2.84e-88 267
Msa0798230 AT4G11290.1 45.902 305 161 4 25 326 23 326 3.31e-88 268
Msa0798230 AT2G35380.1 43.402 341 167 6 4 326 3 335 5.12e-85 259
Msa0798230 AT3G21770.1 44.333 300 163 4 25 322 27 324 6.16e-85 259
Msa0798230 AT5G17820.1 41.745 321 177 4 6 326 3 313 3.53e-84 257
Msa0798230 AT5G64120.1 42.462 325 174 5 9 326 10 328 1.31e-83 256
Msa0798230 AT2G22420.1 43.614 321 172 6 8 326 6 319 6.81e-83 254
Msa0798230 AT5G17820.2 41.745 321 177 4 6 326 56 366 7.41e-83 255
Msa0798230 AT5G42180.1 41.195 318 182 3 8 325 4 316 2.47e-80 247
Msa0798230 AT4G25980.1 41.694 307 170 4 25 326 24 326 1.52e-79 245
Msa0798230 AT2G41480.1 42.462 325 175 7 8 326 10 328 3.16e-79 244
Msa0798230 AT1G05240.1 42.761 297 162 6 30 322 29 321 4.54e-79 244
Msa0798230 AT1G05250.1 42.761 297 162 6 30 322 29 321 4.54e-79 244
Msa0798230 AT5G39580.1 42.320 319 174 6 9 326 10 319 2.06e-77 239
Msa0798230 AT4G33420.1 41.503 306 168 4 21 326 31 325 1.28e-76 238
Msa0798230 AT4G26010.2 41.139 316 170 6 12 326 37 337 1.43e-76 238
Msa0798230 AT4G26010.1 41.139 316 170 6 12 326 9 309 1.53e-76 237
Msa0798230 AT4G33420.2 41.503 306 168 4 21 326 78 372 5.02e-76 238
Msa0798230 AT1G77100.1 41.231 325 175 7 9 326 4 319 2.16e-75 234
Msa0798230 AT4G33870.1 37.538 333 172 4 25 322 66 397 4.06e-74 234
Msa0798230 AT1G30870.1 41.254 303 167 4 27 326 51 345 1.57e-73 231
Msa0798230 AT1G71695.1 38.762 307 178 4 23 326 40 339 2.81e-73 230
Msa0798230 AT2G24800.1 42.997 307 164 5 25 326 29 329 2.73e-72 227
Msa0798230 AT3G49960.1 39.077 325 189 6 9 326 7 329 2.27e-71 224
Msa0798230 AT4G37530.1 41.100 309 177 4 22 326 22 329 4.38e-71 224
Msa0798230 AT5G64100.1 40.728 302 168 5 28 326 38 331 6.02e-71 223
Msa0798230 AT2G18980.1 38.318 321 187 6 11 326 9 323 8.90e-71 223
Msa0798230 AT5G67400.1 39.739 307 178 5 25 326 25 329 4.01e-70 221
Msa0798230 AT5G47000.1 36.842 323 193 5 10 326 13 330 5.63e-70 221
Msa0798230 AT3G28200.1 39.286 308 171 4 25 326 19 316 1.32e-69 219
Msa0798230 AT4G31760.1 40.248 323 179 7 11 326 11 326 1.43e-69 220
Msa0798230 AT5G64110.1 40.803 299 168 6 31 326 38 330 1.59e-69 220
Msa0798230 AT2G34060.1 37.273 330 191 5 10 323 14 343 4.71e-69 219
Msa0798230 AT4G17690.1 39.274 303 175 4 27 326 26 322 9.96e-69 218
Msa0798230 AT4G37520.1 39.542 306 180 4 25 326 25 329 1.90e-68 217
Msa0798230 AT5G14130.1 37.994 329 191 6 5 326 8 330 3.08e-68 216
Msa0798230 AT5G14130.2 37.994 329 191 6 5 326 49 371 5.44e-68 217
Msa0798230 AT5G24070.1 40.132 304 170 6 28 326 39 335 2.11e-67 215
Msa0798230 AT1G34510.1 38.365 318 180 6 10 326 7 309 4.45e-66 210
Msa0798230 AT2G39040.1 41.234 308 172 7 26 326 45 350 7.39e-66 211
Msa0798230 AT4G37520.2 38.889 306 179 5 25 326 25 326 9.87e-66 210
Msa0798230 AT2G43480.1 40.461 304 169 6 28 326 39 335 1.03e-65 210
Msa0798230 AT4G30170.1 36.570 309 185 6 23 326 23 325 1.15e-65 210
Msa0798230 AT5G40150.1 36.688 308 180 4 25 326 30 328 5.09e-63 203
Msa0798230 AT5G22410.1 36.503 326 195 8 4 324 5 323 1.73e-62 202
Msa0798230 AT2G35380.2 43.254 252 121 5 89 326 4 247 7.39e-60 192
Msa0798230 AT4G37530.2 41.923 260 146 4 22 277 22 280 1.13e-59 193
Msa0798230 AT1G24110.1 36.667 330 183 9 12 326 4 322 9.87e-57 187
Msa0798230 AT4G21960.1 33.663 303 192 4 27 326 31 327 1.18e-50 171
Msa0798230 AT2G37130.1 34.853 307 186 7 26 326 29 327 8.91e-50 169
Msa0798230 AT2G37130.2 34.983 303 183 7 30 326 2 296 1.47e-49 167
Msa0798230 AT4G25980.2 46.243 173 90 2 25 197 69 238 5.41e-49 166
Msa0798230 AT3G17070.1 32.673 303 200 4 27 326 38 339 1.08e-47 164
Msa0798230 AT5G39580.2 45.078 193 99 3 9 201 10 195 1.87e-47 160
Msa0798230 AT2G24800.2 44.509 173 89 3 25 195 29 196 8.34e-39 137
Msa0798230 AT3G17070.2 31.034 261 175 5 69 326 18 276 8.11e-33 123
Msa0798230 AT3G42570.1 33.333 138 77 5 56 189 20 146 1.43e-12 65.1

Find 62 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGAGTAAAGGGCCATTT+TGG 0.134765 5_3:-10876039 Msa0798230:intron
TGCAGTTTCCGTTGAGAAAA+TGG 0.188621 5_3:-10875336 Msa0798230:CDS
TACTGCCAAGTTCGTTTCTA+AGG 0.195982 5_3:-10875927 Msa0798230:CDS
AGCTGATTCCGACTCCAATT+TGG 0.302493 5_3:-10875525 Msa0798230:CDS
ACAATCAGACCAAGCTCTAT+TGG 0.304491 5_3:-10875426 Msa0798230:CDS
GATGATACGGACACACTAAA+AGG 0.311071 5_3:-10876368 Msa0798230:CDS
TGGTGTTCTTGCGGGACAAC+AGG 0.315941 5_3:-10875306 Msa0798230:CDS
AGGATCCAACGGAGCCAAAT+TGG 0.341029 5_3:+10875511 None:intergenic
GGTCGCATTGGTGTTCTTGC+GGG 0.352206 5_3:-10875314 Msa0798230:CDS
TTCTTTAATTTCAGAGTAAA+GGG 0.356179 5_3:-10876048 Msa0798230:intron
GAGTCGGAATCAGCTTGATT+TGG 0.362486 5_3:+10875533 None:intergenic
TATACAGGTGCACACACCTT+TGG 0.364289 5_3:-10875665 Msa0798230:intron
CGACTCCAATTTGGCTCCGT+TGG 0.365758 5_3:-10875516 Msa0798230:CDS
CGGGACAACAGGGTCAAATA+AGG 0.380062 5_3:-10875295 Msa0798230:CDS
CTTCTTTAATTTCAGAGTAA+AGG 0.385010 5_3:-10876049 Msa0798230:intron
CCAAGAGGTACAGCCCAAAA+TGG 0.386408 5_3:+10876025 None:intergenic
CAATCAGACCAAGCTCTATT+GGG 0.411380 5_3:-10875425 Msa0798230:CDS
ATACAGGTGCACACACCTTT+GGG 0.413975 5_3:-10875664 Msa0798230:intron
AGCAGCAATCCTTGAGTCAT+TGG 0.423951 5_3:+10876563 None:intergenic
AAGCGATGGATCAGATTTAC+CGG 0.429554 5_3:+10875592 None:intergenic
ATATCTAGGTTCCTAGTTAA+CGG 0.439967 5_3:+10875259 None:intergenic
TTACATTGACAAAACAATCA+TGG 0.440947 5_3:+10876520 None:intergenic
TTCTAAGGGTCTTGAAAAGA+AGG 0.446455 5_3:-10875912 Msa0798230:CDS
GCAGTTTCCGTTGAGAAAAT+GGG 0.456734 5_3:-10875335 Msa0798230:CDS
CTATTCGACTTTGGTGGCTC+CGG 0.463524 5_3:-10875611 Msa0798230:CDS
ATGTGATGGATCTGTGCTAC+TGG 0.464722 5_3:-10876390 Msa0798230:CDS
TTCTAGAGGTTCAAAGGGTG+AGG 0.465492 5_3:+10875955 None:intergenic
AAATTGTAGGGCCGTTAACT+AGG 0.473141 5_3:-10875270 Msa0798230:exon
AAGCCAAGGCTATTCGACTT+TGG 0.481179 5_3:-10875620 Msa0798230:CDS
CAAAACAATCATGGAAATGA+AGG 0.485397 5_3:+10876529 None:intergenic
ATGATACGGACACACTAAAA+GGG 0.487747 5_3:-10876367 Msa0798230:CDS
GGGTCGCATTGGTGTTCTTG+CGG 0.499888 5_3:-10875315 Msa0798230:CDS
TCAAATGTGTTCGTAGTGAC+AGG 0.502481 5_3:+10875491 None:intergenic
TACTAGAAATACAGCATCCC+TGG 0.511005 5_3:+10876220 None:intergenic
AAGGATGTAGCAGTGCTCTC+AGG 0.511701 5_3:-10875893 Msa0798230:intron
CCAAGGCTATTCGACTTTGG+TGG 0.513944 5_3:-10875617 Msa0798230:CDS
TGTGTTACATAGGGATGTGA+TGG 0.525846 5_3:-10876404 Msa0798230:intron
GTACCTCTTGGTCGTAGAGA+TGG 0.545618 5_3:-10876013 Msa0798230:CDS
CCACCAAAGTCGAATAGCCT+TGG 0.547775 5_3:+10875617 None:intergenic
ATCTGTGCTACTGGATGATA+CGG 0.551787 5_3:-10876381 Msa0798230:CDS
ACTGCCAAGTTCGTTTCTAA+GGG 0.553364 5_3:-10875926 Msa0798230:CDS
TATTGTCACCCAATAGAGCT+TGG 0.556737 5_3:+10875417 None:intergenic
ATATACTTACTCTAGCAGCC+AGG 0.559698 5_3:-10876238 Msa0798230:CDS
AAGACCCTTAGAAACGAACT+TGG 0.562544 5_3:+10875922 None:intergenic
GTTGAGAAAATGGGTCGCAT+TGG 0.578115 5_3:-10875326 Msa0798230:CDS
TCTAGAGGTTCAAAGGGTGA+GGG 0.582918 5_3:+10875956 None:intergenic
TGACAATACAACTTCTGCAT+TGG 0.583252 5_3:-10875402 Msa0798230:CDS
AATGCTTTACATTCAAGCCA+AGG 0.586439 5_3:-10875634 Msa0798230:CDS
CAGCTATAGCCAATGACTCA+AGG 0.590497 5_3:-10876572 Msa0798230:CDS
TGGTTGACAATTATAGCAAG+TGG 0.599280 5_3:-10875382 Msa0798230:CDS
TATAGTTGAGAGCACACAAG+TGG 0.607834 5_3:+10876657 None:intergenic
CAACGGAGCCAAATTGGAGT+CGG 0.611523 5_3:+10875517 None:intergenic
TATACTTACTCTAGCAGCCA+GGG 0.615867 5_3:-10876237 Msa0798230:CDS
TCAGCACATGAGACTGTGGA+TGG 0.616095 5_3:+10876260 None:intergenic
AAAGCATTGCGCGAACCCAA+AGG 0.619184 5_3:+10875649 None:intergenic
GGTGTTCTTGCGGGACAACA+GGG 0.632444 5_3:-10875305 Msa0798230:CDS
TTCGTAGTGACAGGATCCAA+CGG 0.634025 5_3:+10875500 None:intergenic
ATTTGCGTCGCTCTCACTCG+CGG 0.635311 5_3:+10875985 None:intergenic
TGATACGGACACACTAAAAG+GGG 0.644413 5_3:-10876366 Msa0798230:CDS
AGAAGTGAAGAATCAAGCGA+TGG 0.646260 5_3:+10875578 None:intergenic
TATATCAGCACATGAGACTG+TGG 0.660979 5_3:+10876256 None:intergenic
GTGCCATCTCTACGACCAAG+AGG 0.689151 5_3:+10876010 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTGCTATTTATATACT+CGG - chr5_3:10875502-10875521 Msa0798230:CDS 15.0%
!!! ATTTTTGCTATTTATATACT+CGG - chr5_3:10875502-10875521 Msa0798230:CDS 15.0%
!!! TTAACAATTTTGTTCAGATT+TGG + chr5_3:10875363-10875382 None:intergenic 20.0%
!!! ATTTCATTTTTGTGTTACAT+AGG - chr5_3:10875555-10875574 Msa0798230:CDS 20.0%
!!! TTTCATTTTTGTGTTACATA+GGG - chr5_3:10875556-10875575 Msa0798230:CDS 20.0%
!!! CCTCTTATTGAATTTTTATT+AGG + chr5_3:10875643-10875662 None:intergenic 20.0%
!! CCTAATAAAAATTCAATAAG+AGG - chr5_3:10875640-10875659 Msa0798230:CDS 20.0%
!!! TTACTATATGATAATGTTTC+TGG - chr5_3:10875821-10875840 Msa0798230:intron 20.0%
!!! TACTATATGATAATGTTTCT+GGG - chr5_3:10875822-10875841 Msa0798230:intron 20.0%
!!! AAGAAGTTCTGATTAATAAT+TGG + chr5_3:10875906-10875925 None:intergenic 20.0%
!!! TTCTTTAATTTCAGAGTAAA+GGG - chr5_3:10875921-10875940 Msa0798230:CDS 20.0%
!! TAACTTTATGTATACAAGAA+AGG + chr5_3:10876240-10876259 None:intergenic 20.0%
!!! AAATCTCTAAAAAACAGAAT+AGG + chr5_3:10876613-10876632 None:intergenic 20.0%
!! TCAAATAAGGAAAAATTGTA+GGG - chr5_3:10876687-10876706 Msa0798230:CDS 20.0%
!!! TTAACAATTTTGTTCAGATT+TGG + chr5_3:10875363-10875382 None:intergenic 20.0%
!!! ATTTCATTTTTGTGTTACAT+AGG - chr5_3:10875555-10875574 Msa0798230:CDS 20.0%
!!! TTTCATTTTTGTGTTACATA+GGG - chr5_3:10875556-10875575 Msa0798230:CDS 20.0%
!!! CCTCTTATTGAATTTTTATT+AGG + chr5_3:10875643-10875662 None:intergenic 20.0%
!! CCTAATAAAAATTCAATAAG+AGG - chr5_3:10875640-10875659 Msa0798230:CDS 20.0%
!!! TTACTATATGATAATGTTTC+TGG - chr5_3:10875821-10875840 Msa0798230:intron 20.0%
!!! TACTATATGATAATGTTTCT+GGG - chr5_3:10875822-10875841 Msa0798230:intron 20.0%
!!! AAGAAGTTCTGATTAATAAT+TGG + chr5_3:10875906-10875925 None:intergenic 20.0%
!!! TTCTTTAATTTCAGAGTAAA+GGG - chr5_3:10875921-10875940 Msa0798230:CDS 20.0%
!! TAACTTTATGTATACAAGAA+AGG + chr5_3:10876240-10876259 None:intergenic 20.0%
!!! AAATCTCTAAAAAACAGAAT+AGG + chr5_3:10876613-10876632 None:intergenic 20.0%
!! TCAAATAAGGAAAAATTGTA+GGG - chr5_3:10876687-10876706 Msa0798230:CDS 20.0%
! TTACATTGACAAAACAATCA+TGG + chr5_3:10875452-10875471 None:intergenic 25.0%
! TTAATTATTTGGAGACTACT+TGG - chr5_3:10875784-10875803 Msa0798230:intron 25.0%
!! ACTATATGATAATGTTTCTG+GGG - chr5_3:10875823-10875842 Msa0798230:intron 25.0%
!! CTTCTTTAATTTCAGAGTAA+AGG - chr5_3:10875920-10875939 Msa0798230:CDS 25.0%
!!! TTATGTTATCGTCATTTTCA+AGG - chr5_3:10876181-10876200 Msa0798230:intron 25.0%
! TTCTAACTCTAATGATCATA+AGG - chr5_3:10876213-10876232 Msa0798230:intron 25.0%
!!! AAAAATGTTTTGAGCAATTC+TGG - chr5_3:10876514-10876533 Msa0798230:intron 25.0%
!!! AAAATGTTTTGAGCAATTCT+GGG - chr5_3:10876515-10876534 Msa0798230:intron 25.0%
! GTCAAATAAGGAAAAATTGT+AGG - chr5_3:10876686-10876705 Msa0798230:CDS 25.0%
! TTACATTGACAAAACAATCA+TGG + chr5_3:10875452-10875471 None:intergenic 25.0%
! TTAATTATTTGGAGACTACT+TGG - chr5_3:10875784-10875803 Msa0798230:intron 25.0%
!! ACTATATGATAATGTTTCTG+GGG - chr5_3:10875823-10875842 Msa0798230:intron 25.0%
!! CTTCTTTAATTTCAGAGTAA+AGG - chr5_3:10875920-10875939 Msa0798230:CDS 25.0%
!!! TTATGTTATCGTCATTTTCA+AGG - chr5_3:10876181-10876200 Msa0798230:intron 25.0%
! TTCTAACTCTAATGATCATA+AGG - chr5_3:10876213-10876232 Msa0798230:intron 25.0%
!!! AAAAATGTTTTGAGCAATTC+TGG - chr5_3:10876514-10876533 Msa0798230:intron 25.0%
!!! AAAATGTTTTGAGCAATTCT+GGG - chr5_3:10876515-10876534 Msa0798230:intron 25.0%
! GTCAAATAAGGAAAAATTGT+AGG - chr5_3:10876686-10876705 Msa0798230:CDS 25.0%
CAAAACAATCATGGAAATGA+AGG + chr5_3:10875443-10875462 None:intergenic 30.0%
GAACTCGCTGTTTAATTATT+TGG - chr5_3:10875773-10875792 Msa0798230:intron 30.0%
!! ATGTTTTCTAGAGGTTCAAA+GGG + chr5_3:10876022-10876041 None:intergenic 30.0%
!! AATGTTTTCTAGAGGTTCAA+AGG + chr5_3:10876023-10876042 None:intergenic 30.0%
GACGATAACATAATTCGAAT+AGG + chr5_3:10876174-10876193 None:intergenic 30.0%
GTAGTCAATACACATGAAAT+TGG + chr5_3:10876272-10876291 None:intergenic 30.0%
ATATCTAGGTTCCTAGTTAA+CGG + chr5_3:10876713-10876732 None:intergenic 30.0%
CAAAACAATCATGGAAATGA+AGG + chr5_3:10875443-10875462 None:intergenic 30.0%
GAACTCGCTGTTTAATTATT+TGG - chr5_3:10875773-10875792 Msa0798230:intron 30.0%
!! ATGTTTTCTAGAGGTTCAAA+GGG + chr5_3:10876022-10876041 None:intergenic 30.0%
!! AATGTTTTCTAGAGGTTCAA+AGG + chr5_3:10876023-10876042 None:intergenic 30.0%
GACGATAACATAATTCGAAT+AGG + chr5_3:10876174-10876193 None:intergenic 30.0%
GTAGTCAATACACATGAAAT+TGG + chr5_3:10876272-10876291 None:intergenic 30.0%
ATATCTAGGTTCCTAGTTAA+CGG + chr5_3:10876713-10876732 None:intergenic 30.0%
ATGATACGGACACACTAAAA+GGG - chr5_3:10875602-10875621 Msa0798230:CDS 35.0%
! TTGGCAGTAATGTTTTCTAG+AGG + chr5_3:10876031-10876050 None:intergenic 35.0%
! TTCTAAGGGTCTTGAAAAGA+AGG - chr5_3:10876057-10876076 Msa0798230:intron 35.0%
TACGCACTCTCAATATATAC+AGG - chr5_3:10876289-10876308 Msa0798230:CDS 35.0%
AATGCTTTACATTCAAGCCA+AGG - chr5_3:10876335-10876354 Msa0798230:CDS 35.0%
TGACAATACAACTTCTGCAT+TGG - chr5_3:10876567-10876586 Msa0798230:CDS 35.0%
TGGTTGACAATTATAGCAAG+TGG - chr5_3:10876587-10876606 Msa0798230:CDS 35.0%
ATGATACGGACACACTAAAA+GGG - chr5_3:10875602-10875621 Msa0798230:CDS 35.0%
! TTGGCAGTAATGTTTTCTAG+AGG + chr5_3:10876031-10876050 None:intergenic 35.0%
! TTCTAAGGGTCTTGAAAAGA+AGG - chr5_3:10876057-10876076 Msa0798230:intron 35.0%
TACGCACTCTCAATATATAC+AGG - chr5_3:10876289-10876308 Msa0798230:CDS 35.0%
AATGCTTTACATTCAAGCCA+AGG - chr5_3:10876335-10876354 Msa0798230:CDS 35.0%
TGACAATACAACTTCTGCAT+TGG - chr5_3:10876567-10876586 Msa0798230:CDS 35.0%
TGGTTGACAATTATAGCAAG+TGG - chr5_3:10876587-10876606 Msa0798230:CDS 35.0%
! TATAGTTGAGAGCACACAAG+TGG + chr5_3:10875315-10875334 None:intergenic 40.0%
TGTGTTACATAGGGATGTGA+TGG - chr5_3:10875565-10875584 Msa0798230:CDS 40.0%
! ATCTGTGCTACTGGATGATA+CGG - chr5_3:10875588-10875607 Msa0798230:CDS 40.0%
GATGATACGGACACACTAAA+AGG - chr5_3:10875601-10875620 Msa0798230:CDS 40.0%
TGATACGGACACACTAAAAG+GGG - chr5_3:10875603-10875622 Msa0798230:CDS 40.0%
TATATCAGCACATGAGACTG+TGG + chr5_3:10875716-10875735 None:intergenic 40.0%
ATATACTTACTCTAGCAGCC+AGG - chr5_3:10875731-10875750 Msa0798230:intron 40.0%
TATACTTACTCTAGCAGCCA+GGG - chr5_3:10875732-10875751 Msa0798230:intron 40.0%
TACTAGAAATACAGCATCCC+TGG + chr5_3:10875752-10875771 None:intergenic 40.0%
! TTCAGAGTAAAGGGCCATTT+TGG - chr5_3:10875930-10875949 Msa0798230:CDS 40.0%
!! TCAGAGTAAAGGGCCATTTT+GGG - chr5_3:10875931-10875950 Msa0798230:CDS 40.0%
TACTGCCAAGTTCGTTTCTA+AGG - chr5_3:10876042-10876061 Msa0798230:intron 40.0%
ACTGCCAAGTTCGTTTCTAA+GGG - chr5_3:10876043-10876062 Msa0798230:intron 40.0%
AAGACCCTTAGAAACGAACT+TGG + chr5_3:10876050-10876069 None:intergenic 40.0%
AAGCGATGGATCAGATTTAC+CGG + chr5_3:10876380-10876399 None:intergenic 40.0%
AGAAGTGAAGAATCAAGCGA+TGG + chr5_3:10876394-10876413 None:intergenic 40.0%
TCAAATGTGTTCGTAGTGAC+AGG + chr5_3:10876481-10876500 None:intergenic 40.0%
ACAATCAGACCAAGCTCTAT+TGG - chr5_3:10876543-10876562 Msa0798230:CDS 40.0%
CAATCAGACCAAGCTCTATT+GGG - chr5_3:10876544-10876563 Msa0798230:CDS 40.0%
TATTGTCACCCAATAGAGCT+TGG + chr5_3:10876555-10876574 None:intergenic 40.0%
TGCAGTTTCCGTTGAGAAAA+TGG - chr5_3:10876633-10876652 Msa0798230:CDS 40.0%
GCAGTTTCCGTTGAGAAAAT+GGG - chr5_3:10876634-10876653 Msa0798230:CDS 40.0%
! AATGCGACCCATTTTCTCAA+CGG + chr5_3:10876644-10876663 None:intergenic 40.0%
AAATTGTAGGGCCGTTAACT+AGG - chr5_3:10876699-10876718 Msa0798230:CDS 40.0%
! TATAGTTGAGAGCACACAAG+TGG + chr5_3:10875315-10875334 None:intergenic 40.0%
TGTGTTACATAGGGATGTGA+TGG - chr5_3:10875565-10875584 Msa0798230:CDS 40.0%
! ATCTGTGCTACTGGATGATA+CGG - chr5_3:10875588-10875607 Msa0798230:CDS 40.0%
GATGATACGGACACACTAAA+AGG - chr5_3:10875601-10875620 Msa0798230:CDS 40.0%
TGATACGGACACACTAAAAG+GGG - chr5_3:10875603-10875622 Msa0798230:CDS 40.0%
TATATCAGCACATGAGACTG+TGG + chr5_3:10875716-10875735 None:intergenic 40.0%
ATATACTTACTCTAGCAGCC+AGG - chr5_3:10875731-10875750 Msa0798230:intron 40.0%
TATACTTACTCTAGCAGCCA+GGG - chr5_3:10875732-10875751 Msa0798230:intron 40.0%
TACTAGAAATACAGCATCCC+TGG + chr5_3:10875752-10875771 None:intergenic 40.0%
! TTCAGAGTAAAGGGCCATTT+TGG - chr5_3:10875930-10875949 Msa0798230:CDS 40.0%
!! TCAGAGTAAAGGGCCATTTT+GGG - chr5_3:10875931-10875950 Msa0798230:CDS 40.0%
TACTGCCAAGTTCGTTTCTA+AGG - chr5_3:10876042-10876061 Msa0798230:intron 40.0%
ACTGCCAAGTTCGTTTCTAA+GGG - chr5_3:10876043-10876062 Msa0798230:intron 40.0%
AAGACCCTTAGAAACGAACT+TGG + chr5_3:10876050-10876069 None:intergenic 40.0%
AAGCGATGGATCAGATTTAC+CGG + chr5_3:10876380-10876399 None:intergenic 40.0%
AGAAGTGAAGAATCAAGCGA+TGG + chr5_3:10876394-10876413 None:intergenic 40.0%
TCAAATGTGTTCGTAGTGAC+AGG + chr5_3:10876481-10876500 None:intergenic 40.0%
ACAATCAGACCAAGCTCTAT+TGG - chr5_3:10876543-10876562 Msa0798230:CDS 40.0%
CAATCAGACCAAGCTCTATT+GGG - chr5_3:10876544-10876563 Msa0798230:CDS 40.0%
TATTGTCACCCAATAGAGCT+TGG + chr5_3:10876555-10876574 None:intergenic 40.0%
TGCAGTTTCCGTTGAGAAAA+TGG - chr5_3:10876633-10876652 Msa0798230:CDS 40.0%
GCAGTTTCCGTTGAGAAAAT+GGG - chr5_3:10876634-10876653 Msa0798230:CDS 40.0%
! AATGCGACCCATTTTCTCAA+CGG + chr5_3:10876644-10876663 None:intergenic 40.0%
AAATTGTAGGGCCGTTAACT+AGG - chr5_3:10876699-10876718 Msa0798230:CDS 40.0%
CAGCTATAGCCAATGACTCA+AGG - chr5_3:10875397-10875416 Msa0798230:CDS 45.0%
AGCAGCAATCCTTGAGTCAT+TGG + chr5_3:10875409-10875428 None:intergenic 45.0%
!! ATGTGATGGATCTGTGCTAC+TGG - chr5_3:10875579-10875598 Msa0798230:CDS 45.0%
TCTAGAGGTTCAAAGGGTGA+GGG + chr5_3:10876016-10876035 None:intergenic 45.0%
! TTCTAGAGGTTCAAAGGGTG+AGG + chr5_3:10876017-10876036 None:intergenic 45.0%
TATACAGGTGCACACACCTT+TGG - chr5_3:10876304-10876323 Msa0798230:CDS 45.0%
ATACAGGTGCACACACCTTT+GGG - chr5_3:10876305-10876324 Msa0798230:CDS 45.0%
AAGCCAAGGCTATTCGACTT+TGG - chr5_3:10876349-10876368 Msa0798230:CDS 45.0%
GAGTCGGAATCAGCTTGATT+TGG + chr5_3:10876439-10876458 None:intergenic 45.0%
! AGCTGATTCCGACTCCAATT+TGG - chr5_3:10876444-10876463 Msa0798230:intron 45.0%
TTCGTAGTGACAGGATCCAA+CGG + chr5_3:10876472-10876491 None:intergenic 45.0%
GTTGAGAAAATGGGTCGCAT+TGG - chr5_3:10876643-10876662 Msa0798230:CDS 45.0%
CAGCTATAGCCAATGACTCA+AGG - chr5_3:10875397-10875416 Msa0798230:CDS 45.0%
AGCAGCAATCCTTGAGTCAT+TGG + chr5_3:10875409-10875428 None:intergenic 45.0%
!! ATGTGATGGATCTGTGCTAC+TGG - chr5_3:10875579-10875598 Msa0798230:CDS 45.0%
TCTAGAGGTTCAAAGGGTGA+GGG + chr5_3:10876016-10876035 None:intergenic 45.0%
! TTCTAGAGGTTCAAAGGGTG+AGG + chr5_3:10876017-10876036 None:intergenic 45.0%
TATACAGGTGCACACACCTT+TGG - chr5_3:10876304-10876323 Msa0798230:CDS 45.0%
ATACAGGTGCACACACCTTT+GGG - chr5_3:10876305-10876324 Msa0798230:CDS 45.0%
AAGCCAAGGCTATTCGACTT+TGG - chr5_3:10876349-10876368 Msa0798230:CDS 45.0%
GAGTCGGAATCAGCTTGATT+TGG + chr5_3:10876439-10876458 None:intergenic 45.0%
! AGCTGATTCCGACTCCAATT+TGG - chr5_3:10876444-10876463 Msa0798230:intron 45.0%
TTCGTAGTGACAGGATCCAA+CGG + chr5_3:10876472-10876491 None:intergenic 45.0%
GTTGAGAAAATGGGTCGCAT+TGG - chr5_3:10876643-10876662 Msa0798230:CDS 45.0%
TCAGCACATGAGACTGTGGA+TGG + chr5_3:10875712-10875731 None:intergenic 50.0%
! CCAAGAGGTACAGCCCAAAA+TGG + chr5_3:10875947-10875966 None:intergenic 50.0%
! CCATTTTGGGCTGTACCTCT+TGG - chr5_3:10875944-10875963 Msa0798230:CDS 50.0%
GTACCTCTTGGTCGTAGAGA+TGG - chr5_3:10875956-10875975 Msa0798230:CDS 50.0%
AAGGATGTAGCAGTGCTCTC+AGG - chr5_3:10876076-10876095 Msa0798230:intron 50.0%
!! AAAGCATTGCGCGAACCCAA+AGG + chr5_3:10876323-10876342 None:intergenic 50.0%
CCACCAAAGTCGAATAGCCT+TGG + chr5_3:10876355-10876374 None:intergenic 50.0%
CCAAGGCTATTCGACTTTGG+TGG - chr5_3:10876352-10876371 Msa0798230:CDS 50.0%
! CTATTCGACTTTGGTGGCTC+CGG - chr5_3:10876358-10876377 Msa0798230:CDS 50.0%
CAACGGAGCCAAATTGGAGT+CGG + chr5_3:10876455-10876474 None:intergenic 50.0%
AGGATCCAACGGAGCCAAAT+TGG + chr5_3:10876461-10876480 None:intergenic 50.0%
CGGGACAACAGGGTCAAATA+AGG - chr5_3:10876674-10876693 Msa0798230:CDS 50.0%
TCAGCACATGAGACTGTGGA+TGG + chr5_3:10875712-10875731 None:intergenic 50.0%
! CCAAGAGGTACAGCCCAAAA+TGG + chr5_3:10875947-10875966 None:intergenic 50.0%
! CCATTTTGGGCTGTACCTCT+TGG - chr5_3:10875944-10875963 Msa0798230:CDS 50.0%
GTACCTCTTGGTCGTAGAGA+TGG - chr5_3:10875956-10875975 Msa0798230:CDS 50.0%
AAGGATGTAGCAGTGCTCTC+AGG - chr5_3:10876076-10876095 Msa0798230:intron 50.0%
!! AAAGCATTGCGCGAACCCAA+AGG + chr5_3:10876323-10876342 None:intergenic 50.0%
CCACCAAAGTCGAATAGCCT+TGG + chr5_3:10876355-10876374 None:intergenic 50.0%
CCAAGGCTATTCGACTTTGG+TGG - chr5_3:10876352-10876371 Msa0798230:CDS 50.0%
! CTATTCGACTTTGGTGGCTC+CGG - chr5_3:10876358-10876377 Msa0798230:CDS 50.0%
CAACGGAGCCAAATTGGAGT+CGG + chr5_3:10876455-10876474 None:intergenic 50.0%
AGGATCCAACGGAGCCAAAT+TGG + chr5_3:10876461-10876480 None:intergenic 50.0%
CGGGACAACAGGGTCAAATA+AGG - chr5_3:10876674-10876693 Msa0798230:CDS 50.0%
GTGCCATCTCTACGACCAAG+AGG + chr5_3:10875962-10875981 None:intergenic 55.0%
ATTTGCGTCGCTCTCACTCG+CGG + chr5_3:10875987-10876006 None:intergenic 55.0%
! CGACTCCAATTTGGCTCCGT+TGG - chr5_3:10876453-10876472 Msa0798230:intron 55.0%
! GGGTCGCATTGGTGTTCTTG+CGG - chr5_3:10876654-10876673 Msa0798230:CDS 55.0%
! GGTCGCATTGGTGTTCTTGC+GGG - chr5_3:10876655-10876674 Msa0798230:CDS 55.0%
TGGTGTTCTTGCGGGACAAC+AGG - chr5_3:10876663-10876682 Msa0798230:CDS 55.0%
GGTGTTCTTGCGGGACAACA+GGG - chr5_3:10876664-10876683 Msa0798230:CDS 55.0%
GTGCCATCTCTACGACCAAG+AGG + chr5_3:10875962-10875981 None:intergenic 55.0%
ATTTGCGTCGCTCTCACTCG+CGG + chr5_3:10875987-10876006 None:intergenic 55.0%
! CGACTCCAATTTGGCTCCGT+TGG - chr5_3:10876453-10876472 Msa0798230:intron 55.0%
! GGGTCGCATTGGTGTTCTTG+CGG - chr5_3:10876654-10876673 Msa0798230:CDS 55.0%
! GGTCGCATTGGTGTTCTTGC+GGG - chr5_3:10876655-10876674 Msa0798230:CDS 55.0%
TGGTGTTCTTGCGGGACAAC+AGG - chr5_3:10876663-10876682 Msa0798230:CDS 55.0%
GGTGTTCTTGCGGGACAACA+GGG - chr5_3:10876664-10876683 Msa0798230:CDS 55.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 10875252 10876739 10875252 ID=Msa0798230;Name=Msa0798230
chr5_3 mRNA 10875252 10876739 10875252 ID=Msa0798230-mRNA-1;Parent=Msa0798230;Name=Msa0798230-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0.66|0.5|1|1|1|4|19|326
chr5_3 exon 10875252 10875680 10875252 ID=Msa0798230-mRNA-1:exon:4514;Parent=Msa0798230-mRNA-1
chr5_3 exon 10875894 10876056 10875894 ID=Msa0798230-mRNA-1:exon:4513;Parent=Msa0798230-mRNA-1
chr5_3 exon 10876223 10876414 10876223 ID=Msa0798230-mRNA-1:exon:4512;Parent=Msa0798230-mRNA-1
chr5_3 exon 10876524 10876739 10876524 ID=Msa0798230-mRNA-1:exon:4511;Parent=Msa0798230-mRNA-1
chr5_3 CDS 10876524 10876739 10876524 ID=Msa0798230-mRNA-1:cds;Parent=Msa0798230-mRNA-1
chr5_3 CDS 10876223 10876414 10876223 ID=Msa0798230-mRNA-1:cds;Parent=Msa0798230-mRNA-1
chr5_3 CDS 10875894 10876056 10875894 ID=Msa0798230-mRNA-1:cds;Parent=Msa0798230-mRNA-1
chr5_3 CDS 10875271 10875680 10875271 ID=Msa0798230-mRNA-1:cds;Parent=Msa0798230-mRNA-1
chr5_3 three_prime_UTR 10875252 10875270 10875252 ID=Msa0798230-mRNA-1:three_prime_utr;Parent=Msa0798230-mRNA-1
Gene Sequence

>Msa0798230

ATGGAGTGTGTGTCTAAGAAACATGTTTTTGTTTTCATGTTTTGTCTTGTGTTTCTTACTCCACTTGTGTGCTCTCAACTATATTACAATTTCTATAACAGAACTTGTCCAAATCTGAACAAAATTGTTAAAGACAATATCTTGTCAGCTATAGCCAATGACTCAAGGATTGCTGCTTCTCTCTTGCGCCTTCATTTCCATGATTGTTTTGTCAATGGATGTGATGGATCTGTGCTACTGGATGATACGGACACACTAAAAGGGGAGAAAAATGCACTTCCTAATAAAAATTCAATAAGAGGATTTGATGTAATTGATAAAATAAAGTCTGATTTAGAGAATGCTTGTCCATCCACAGTCTCATGTGCTGATATACTTACTCTAGCAGCCAGGGATGCTGTATTTCTAAGTAAAGGGCCATTTTGGGCTGTACCTCTTGGTCGTAGAGATGGCACAACCGCGAGTGAGAGCGACGCAAATAACTTGCCCTCACCCTTTGAACCTCTAGAAAACATTACTGCCAAGTTCGTTTCTAAGGGTCTTGAAAAGAAGGATGTAGCAGTGCTCTCAGGTGCACACACCTTTGGGTTCGCGCAATGCTTTACATTCAAGCCAAGGCTATTCGACTTTGGTGGCTCCGGTAAATCTGATCCATCGCTTGATTCTTCACTTCTACAAAATTTACAAAAAGTATGTCCAAATCAAGCTGATTCCGACTCCAATTTGGCTCCGTTGGATCCTGTCACTACGAACACATTTGATAACACATATTACAAAAATGTTTTGAGCAATTCTGGGTTACTACAATCAGACCAAGCTCTATTGGGTGACAATACAACTTCTGCATTGGTTGACAATTATAGCAAGTGGCCTATTCTGTTTTTTAGAGATTTTGCAGTTTCCGTTGAGAAAATGGGTCGCATTGGTGTTCTTGCGGGACAACAGGGTCAAATAAGGAAAAATTGTAGGGCCGTTAACTAG

Protein sequence

>Msa0798230

MECVSKKHVFVFMFCLVFLTPLVCSQLYYNFYNRTCPNLNKIVKDNILSAIANDSRIAASLLRLHFHDCFVNGCDGSVLLDDTDTLKGEKNALPNKNSIRGFDVIDKIKSDLENACPSTVSCADILTLAARDAVFLSKGPFWAVPLGRRDGTTASESDANNLPSPFEPLENITAKFVSKGLEKKDVAVLSGAHTFGFAQCFTFKPRLFDFGGSGKSDPSLDSSLLQNLQKVCPNQADSDSNLAPLDPVTTNTFDNTYYKNVLSNSGLLQSDQALLGDNTTSALVDNYSKWPILFFRDFAVSVEKMGRIGVLAGQQGQIRKNCRAVN*