AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1235760


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1235760 MtrunA17_Chr8g0345771 94.690 339 7 5 17 348 1 335 0.0 548
Msa1235760 MtrunA17_Chr7g0276471 90.741 108 10 0 183 290 116 223 1.50e-66 216
Msa1235760 MtrunA17_Chr1g0178071 55.975 159 64 3 180 334 71 227 3.18e-49 168
Msa1235760 MtrunA17_Chr5g0422501 44.068 236 84 7 94 293 127 350 1.92e-48 168
Msa1235760 MtrunA17_Chr7g0266821 73.333 105 25 2 189 293 65 166 4.63e-47 161
Msa1235760 MtrunA17_Chr1g0198661 61.111 126 34 2 178 290 185 308 4.75e-44 155
Msa1235760 MtrunA17_Chr1g0213701 50.877 114 44 3 159 272 145 246 2.33e-28 112
Msa1235760 MtrunA17_Chr4g0012861 36.134 119 68 4 184 300 314 426 4.27e-16 79.7
Msa1235760 MtrunA17_Chr2g0281191 38.182 110 60 4 184 291 352 455 5.44e-15 76.3
Msa1235760 MtrunA17_Chr5g0432721 39.560 91 50 3 184 272 321 408 2.84e-14 73.9
Msa1235760 MtrunA17_Chr3g0107701 39.560 91 50 3 184 272 338 425 9.74e-14 72.4
Msa1235760 MtrunA17_Chr3g0115271 32.576 132 79 3 158 288 95 217 3.08e-13 70.9
Msa1235760 MtrunA17_Chr7g0244871 39.326 89 49 3 184 270 12 97 5.54e-13 64.7
Msa1235760 MtrunA17_Chr4g0046371 40.206 97 56 2 183 277 146 242 1.11e-12 69.3
Msa1235760 MtrunA17_Chr2g0282961 41.237 97 55 2 183 277 156 252 2.11e-12 68.2
Msa1235760 MtrunA17_Chr2g0326761 37.624 101 61 2 180 278 103 203 3.76e-12 67.4
Msa1235760 MtrunA17_Chr4g0028971 35.200 125 74 3 180 302 104 223 1.42e-11 65.9
Msa1235760 MtrunA17_Chr7g0264171 32.540 126 80 2 178 302 124 245 1.64e-11 65.5
Msa1235760 MtrunA17_Chr1g0199681 35.052 97 62 1 178 273 186 282 2.32e-11 65.1
Msa1235760 MtrunA17_Chr8g0389081 32.743 113 71 2 177 288 128 236 4.91e-11 64.3
Msa1235760 MtrunA17_Chr4g0029671 38.235 102 61 2 178 277 159 260 5.19e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1235760 AT2G46870.1 62.712 177 45 3 171 346 21 177 2.26e-67 214
Msa1235760 AT1G01030.2 85.586 111 15 1 180 289 51 161 8.27e-64 206
Msa1235760 AT1G01030.1 85.586 111 15 1 180 289 51 161 1.50e-63 206
Msa1235760 AT3G61970.1 60.947 169 42 5 168 333 6 153 9.68e-60 194
Msa1235760 AT4G01500.1 60.645 155 46 3 177 318 28 180 1.23e-53 180
Msa1235760 AT3G11580.4 65.574 122 29 2 180 290 24 143 8.46e-50 167
Msa1235760 AT3G11580.2 65.574 122 29 2 180 290 24 143 8.46e-50 167
Msa1235760 AT3G11580.5 65.574 122 29 2 180 290 24 143 8.46e-50 167
Msa1235760 AT3G11580.1 65.574 122 29 2 180 290 24 143 1.91e-49 167
Msa1235760 AT1G68840.2 69.912 113 30 2 181 291 184 294 1.14e-48 167
Msa1235760 AT1G68840.1 69.912 113 30 2 181 291 184 294 1.14e-48 167
Msa1235760 AT5G06250.5 59.559 136 43 2 181 306 42 175 1.30e-48 165
Msa1235760 AT5G06250.2 59.559 136 43 2 181 306 42 175 2.11e-48 165
Msa1235760 AT3G11580.3 64.000 125 32 2 177 290 21 143 2.19e-48 167
Msa1235760 AT5G06250.4 59.559 136 43 2 181 306 42 175 2.28e-48 164
Msa1235760 AT5G06250.1 59.559 136 43 2 181 306 42 175 3.66e-48 164
Msa1235760 AT5G06250.3 59.559 136 43 2 181 306 42 175 4.68e-48 163
Msa1235760 AT1G13260.1 42.667 225 93 7 94 293 82 295 2.55e-47 164
Msa1235760 AT2G36080.4 69.298 114 30 2 180 290 33 144 1.11e-46 157
Msa1235760 AT2G36080.2 69.298 114 30 2 180 290 33 144 1.11e-46 157
Msa1235760 AT2G36080.3 69.298 114 30 2 180 290 33 144 1.30e-46 159
Msa1235760 AT2G36080.1 69.298 114 30 2 180 290 33 144 1.44e-46 159
Msa1235760 AT1G25560.1 63.025 119 34 2 181 291 191 307 3.73e-45 158
Msa1235760 AT3G25730.1 41.256 223 92 5 94 291 82 290 6.09e-44 154
Msa1235760 AT1G50680.1 33.466 251 118 10 65 270 7 253 9.35e-26 106
Msa1235760 AT1G51120.1 34.634 205 100 6 97 270 70 271 1.68e-25 105
Msa1235760 AT4G32010.1 38.182 110 60 4 184 291 285 388 7.05e-16 79.3
Msa1235760 AT4G32010.2 38.182 110 60 4 184 291 281 384 7.85e-16 79.3
Msa1235760 AT1G35240.1 37.857 140 74 6 166 303 111 239 7.30e-15 76.3
Msa1235760 AT2G30470.1 39.560 91 50 3 184 272 294 381 1.72e-14 75.1
Msa1235760 AT1G35520.1 37.143 140 75 6 166 303 111 239 5.96e-14 73.6
Msa1235760 AT1G34310.1 36.429 140 76 6 166 303 111 239 9.38e-14 72.8
Msa1235760 AT1G34410.1 35.714 140 77 6 166 303 111 239 9.37e-13 69.7
Msa1235760 AT1G35540.1 32.530 166 94 7 145 303 85 239 1.09e-12 69.7
Msa1235760 AT2G33860.1 40.217 92 54 1 183 273 157 248 5.54e-12 67.4
Msa1235760 AT1G34390.1 32.704 159 88 7 145 296 85 231 6.63e-12 67.0
Msa1235760 AT1G77850.1 34.862 109 66 2 181 288 115 219 9.47e-12 66.6
Msa1235760 AT1G77850.2 34.862 109 66 2 181 288 115 219 1.03e-11 66.6
Msa1235760 AT2G28350.2 30.597 134 84 3 144 272 74 203 1.48e-11 66.2
Msa1235760 AT2G28350.1 30.597 134 84 3 144 272 74 203 1.62e-11 65.9
Msa1235760 AT5G60450.2 30.201 149 97 2 132 279 106 248 2.09e-11 65.9
Msa1235760 AT5G60450.1 30.201 149 97 2 132 279 130 272 2.12e-11 65.9
Msa1235760 AT2G33860.2 39.560 91 54 1 184 273 1 91 4.07e-11 64.3
Msa1235760 AT4G30080.1 35.714 98 62 1 177 273 112 209 5.70e-11 64.3

Find 77 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGATTTAGATACTCTTAT+TGG 0.204888 8_2:-13958882 Msa1235760:CDS
TTATCAAGTCAAATTCTTCT+TGG 0.232204 8_2:+13959562 None:intergenic
ATGTTTCCATTTCATCAATA+TGG 0.246411 8_2:-13958509 Msa1235760:three_prime_UTR
TTTAAAGCAAATAGATTTCA+TGG 0.253920 8_2:-13959169 Msa1235760:CDS
AACAACAATATTCTATTAGA+TGG 0.265622 8_2:-13958645 Msa1235760:CDS
GCAGCATCTAAAGGAGGATT+AGG 0.296328 8_2:-13959243 Msa1235760:CDS
ATAGAATATTGTTGTTGATT+AGG 0.302183 8_2:+13958652 None:intergenic
GGCATAGGTTGTTTATAGAT+TGG 0.332546 8_2:-13958747 Msa1235760:CDS
CTACTAATGGTGCTGCAAAA+AGG 0.355470 8_2:-13958253 Msa1235760:three_prime_UTR
GCTGCTGAATTGTGAGATTC+TGG 0.358440 8_2:+13959261 None:intergenic
TTATTCACAAGAAGAATTAG+AGG 0.367007 8_2:-13959508 Msa1235760:CDS
TGTTCTTGTTGTTGTGGAAC+AGG 0.367314 8_2:+13959090 None:intergenic
AAAATTCATCTGATTGTGTA+AGG 0.368478 8_2:+13958541 None:intergenic
CCACCACCATATTGATGAAA+TGG 0.378629 8_2:+13958503 None:intergenic
GAAGATAAAGAGAAATTAGA+AGG 0.384050 8_2:+13959390 None:intergenic
TGCTGATGTTGTAACCTTTG+TGG 0.393602 8_2:+13958580 None:intergenic
CAACAAGAAGGAGGAGGAGG+AGG 0.405771 8_2:-13958368 Msa1235760:three_prime_UTR
ATTTGACTTGATAATTATCA+TGG 0.414547 8_2:-13959553 Msa1235760:CDS
CAAAGCTATGTTATGACAAA+AGG 0.424983 8_2:-13958850 Msa1235760:CDS
GCGGCGTCGGCGAATTGTTT+AGG 0.427168 8_2:-13958768 Msa1235760:CDS
CTTTAAATTTGTGAAATTTG+AGG 0.440342 8_2:+13959185 None:intergenic
TGTTGTAACCTTTGTGGTGT+TGG 0.444187 8_2:+13958586 None:intergenic
TTCAACAAGTGATGATAACT+TGG 0.444286 8_2:-13958189 Msa1235760:three_prime_UTR
GCTACTACTAGTACTACTAA+TGG 0.446131 8_2:-13958266 Msa1235760:three_prime_UTR
TGTTGGGAAACTAAACCGTT+TGG 0.462142 8_2:-13959004 Msa1235760:CDS
TGATGATGATAATGAGAAAC+AGG 0.463873 8_2:+13958311 None:intergenic
TGTTGATTAGGAAGAAAGAA+AGG 0.468194 8_2:+13958664 None:intergenic
TCATTTGATGTTGAATCAAG+TGG 0.470685 8_2:+13958949 None:intergenic
ACCATCACTTCAACATTTGA+AGG 0.471635 8_2:-13958147 Msa1235760:three_prime_UTR
ATAGGTTGTTTATAGATTGG+AGG 0.472973 8_2:-13958744 Msa1235760:CDS
AACCTTTGTGGTGTTGGATA+AGG 0.473019 8_2:+13958592 None:intergenic
GTTGTAACACCAAGTGATGT+TGG 0.474361 8_2:-13959021 Msa1235760:CDS
ACAACAATATTCTATTAGAT+GGG 0.482618 8_2:-13958644 Msa1235760:CDS
CATTACTAGTTAAATTTCCA+TGG 0.483330 8_2:+13958288 None:intergenic
TTGCATCTTGATGTTGGTGA+TGG 0.485306 8_2:+13959211 None:intergenic
CAGCATCTAAAGGAGGATTA+GGG 0.488321 8_2:-13959242 Msa1235760:CDS
CAGCAACAAGAAGGAGGAGG+AGG 0.488402 8_2:-13958371 Msa1235760:three_prime_UTR
AAGATAGAAATGGAAAATTG+TGG 0.489600 8_2:-13958903 Msa1235760:CDS
TTGTAACACCAAGTGATGTT+GGG 0.490137 8_2:-13959020 Msa1235760:CDS
TGTTCTTGTTCTTGTTGTTG+TGG 0.492978 8_2:+13959084 None:intergenic
TCGGCGAATTGTTTAGGCAT+AGG 0.495937 8_2:-13958762 Msa1235760:CDS
TTTCTCATCAACAAAATCAA+TGG 0.499739 8_2:-13959314 Msa1235760:CDS
CACAATTCAGCAGCATCTAA+AGG 0.501419 8_2:-13959252 Msa1235760:CDS
CTTCCTTGAGGCATTGATGA+TGG 0.504465 8_2:+13958407 None:intergenic
CCATTTCATCAATATGGTGG+TGG 0.507266 8_2:-13958503 Msa1235760:three_prime_UTR
CATCAACAAAATCAATGGCT+AGG 0.531892 8_2:-13959309 Msa1235760:CDS
GTTGATGTTTCTTCATGATG+AGG 0.536446 8_2:+13958122 None:intergenic
GATAAAGAGAAATTAGAAGG+TGG 0.541995 8_2:+13959393 None:intergenic
AAGGTTGTTTGGTGTGAACA+TGG 0.542303 8_2:-13958228 Msa1235760:three_prime_UTR
GCTATGTTATGACAAAAGGT+TGG 0.544721 8_2:-13958846 Msa1235760:CDS
TTTAGTTTCCCAACATCACT+TGG 0.546847 8_2:+13959012 None:intergenic
GATTCAACATCAAATGAGAA+AGG 0.548994 8_2:-13958943 Msa1235760:CDS
TTATGATGATGAGTTGTTGA+AGG 0.549913 8_2:+13959360 None:intergenic
AACATCAACAAGATTTGAAG+AGG 0.552072 8_2:-13958108 Msa1235760:three_prime_UTR
AGTGATGGTACTATTGAAGA+AGG 0.553751 8_2:+13958161 None:intergenic
ACCTTCAAATGTTGAAGTGA+TGG 0.554721 8_2:+13958146 None:intergenic
TTTCCATTTCATCAATATGG+TGG 0.556128 8_2:-13958506 Msa1235760:three_prime_UTR
TTTGGTGTGAACATGGAGTG+TGG 0.563933 8_2:-13958221 Msa1235760:three_prime_UTR
GTGAAAAGTGTTGCTGATGA+AGG 0.570944 8_2:+13958688 None:intergenic
GTTTCATTTCAACGCGGCGT+CGG 0.571504 8_2:-13958781 Msa1235760:CDS
AGGTTGTTGCATCTTGATGT+TGG 0.573287 8_2:+13959205 None:intergenic
TGAGGCATTGATGATGGTGC+TGG 0.585946 8_2:+13958413 None:intergenic
AAATTCATCTGATTGTGTAA+GGG 0.598032 8_2:+13958542 None:intergenic
AGTACAAGACAGCAACAAGA+AGG 0.600583 8_2:-13958380 Msa1235760:three_prime_UTR
CAATATTCTATTAGATGGGG+AGG 0.609587 8_2:-13958640 Msa1235760:CDS
AGACAGCAACAAGAAGGAGG+AGG 0.619946 8_2:-13958374 Msa1235760:three_prime_UTR
GATTTCATGGAATTGTCACT+AGG 0.623329 8_2:-13959156 Msa1235760:CDS
TTCCTTATCCAACACCACAA+AGG 0.633231 8_2:-13958594 Msa1235760:CDS
ACAAGACAGCAACAAGAAGG+AGG 0.633565 8_2:-13958377 Msa1235760:three_prime_UTR
CAACAATATTCTATTAGATG+GGG 0.645043 8_2:-13958643 Msa1235760:CDS
GCACCATCATCAATGCCTCA+AGG 0.646120 8_2:-13958410 Msa1235760:three_prime_UTR
TCTCATTATCATCATCACCA+TGG 0.646213 8_2:-13958305 Msa1235760:three_prime_UTR
CTTGTACTCAAGCTTCCTTG+AGG 0.650771 8_2:+13958395 None:intergenic
GGTGTGAACATGGAGTGTGG+TGG 0.666596 8_2:-13958218 Msa1235760:three_prime_UTR
TCTTGTTGTTGTGGAACAGG+AGG 0.666596 8_2:+13959093 None:intergenic
AATTCAGCAGCATCTAAAGG+AGG 0.671535 8_2:-13959249 Msa1235760:CDS
GACATTGTTTCATTTCAACG+CGG 0.724243 8_2:-13958787 Msa1235760:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGGGTTATTAAAAAAAATAT+GGG + chr8_2:13958085-13958104 None:intergenic 15.0%
!! TTGGGTTATTAAAAAAAATA+TGG + chr8_2:13958086-13958105 None:intergenic 15.0%
!! ATTTGACAAAATTAATAAAG+TGG + chr8_2:13958133-13958152 None:intergenic 15.0%
!! AAAAAAATTGTATATGATGA+GGG + chr8_2:13958192-13958211 None:intergenic 15.0%
!! AAAAAAAATTGTATATGATG+AGG + chr8_2:13958193-13958212 None:intergenic 15.0%
!! TGGGTTATTAAAAAAAATAT+GGG + chr8_2:13958085-13958104 None:intergenic 15.0%
!! TTGGGTTATTAAAAAAAATA+TGG + chr8_2:13958086-13958105 None:intergenic 15.0%
!! ATTTGACAAAATTAATAAAG+TGG + chr8_2:13958133-13958152 None:intergenic 15.0%
!! AAAAAAATTGTATATGATGA+GGG + chr8_2:13958192-13958211 None:intergenic 15.0%
!! AAAAAAAATTGTATATGATG+AGG + chr8_2:13958193-13958212 None:intergenic 15.0%
!! AAAAGAATTACCAAGAAAAA+TGG + chr8_2:13958028-13958047 None:intergenic 20.0%
!! GGGTTATTAAAAAAAATATG+GGG + chr8_2:13958084-13958103 None:intergenic 20.0%
!! TTGACGGAAAAAAATATATT+GGG + chr8_2:13958104-13958123 None:intergenic 20.0%
!! TTTGACGGAAAAAAATATAT+TGG + chr8_2:13958105-13958124 None:intergenic 20.0%
!!! AATAAAGTGGAAAATTTTGA+CGG + chr8_2:13958120-13958139 None:intergenic 20.0%
!! AAAAAATTGTATATGATGAG+GGG + chr8_2:13958191-13958210 None:intergenic 20.0%
!!! ATTTGACTTGATAATTATCA+TGG - chr8_2:13958285-13958304 Msa1235760:three_prime_UTR 20.0%
!! CTTTAAATTTGTGAAATTTG+AGG + chr8_2:13958656-13958675 None:intergenic 20.0%
!!! TTTAAAGCAAATAGATTTCA+TGG - chr8_2:13958669-13958688 Msa1235760:CDS 20.0%
!!! GTTTTTTCTCTTTAACAAAA+CGG + chr8_2:13959020-13959039 None:intergenic 20.0%
!!! ATAGAATATTGTTGTTGATT+AGG + chr8_2:13959189-13959208 None:intergenic 20.0%
!! AACAACAATATTCTATTAGA+TGG - chr8_2:13959193-13959212 Msa1235760:CDS 20.0%
!! ACAACAATATTCTATTAGAT+GGG - chr8_2:13959194-13959213 Msa1235760:CDS 20.0%
!!! ATTTTAGTACTATTTAGAAG+TGG - chr8_2:13959941-13959960 Msa1235760:intron 20.0%
!! AAAAGAATTACCAAGAAAAA+TGG + chr8_2:13958028-13958047 None:intergenic 20.0%
!! GGGTTATTAAAAAAAATATG+GGG + chr8_2:13958084-13958103 None:intergenic 20.0%
!! TTGACGGAAAAAAATATATT+GGG + chr8_2:13958104-13958123 None:intergenic 20.0%
!! TTTGACGGAAAAAAATATAT+TGG + chr8_2:13958105-13958124 None:intergenic 20.0%
!!! AATAAAGTGGAAAATTTTGA+CGG + chr8_2:13958120-13958139 None:intergenic 20.0%
!! AAAAAATTGTATATGATGAG+GGG + chr8_2:13958191-13958210 None:intergenic 20.0%
!!! ATTTGACTTGATAATTATCA+TGG - chr8_2:13958285-13958304 Msa1235760:three_prime_UTR 20.0%
!! CTTTAAATTTGTGAAATTTG+AGG + chr8_2:13958656-13958675 None:intergenic 20.0%
!!! TTTAAAGCAAATAGATTTCA+TGG - chr8_2:13958669-13958688 Msa1235760:CDS 20.0%
!!! GTTTTTTCTCTTTAACAAAA+CGG + chr8_2:13959020-13959039 None:intergenic 20.0%
!!! ATAGAATATTGTTGTTGATT+AGG + chr8_2:13959189-13959208 None:intergenic 20.0%
!! AACAACAATATTCTATTAGA+TGG - chr8_2:13959193-13959212 Msa1235760:CDS 20.0%
!! ACAACAATATTCTATTAGAT+GGG - chr8_2:13959194-13959213 Msa1235760:CDS 20.0%
!!! ATTTTAGTACTATTTAGAAG+TGG - chr8_2:13959941-13959960 Msa1235760:intron 20.0%
!!! ATGGTTTTGTTTTTGTCTTT+AGG - chr8_2:13957887-13957906 Msa1235760:three_prime_UTR 25.0%
!!! TGGTTTTGTTTTTGTCTTTA+GGG - chr8_2:13957888-13957907 Msa1235760:three_prime_UTR 25.0%
! AAAGGAAAACAAAGAAAAAG+AGG + chr8_2:13957962-13957981 None:intergenic 25.0%
!! TATTTTATGGGAGAATTATG+AGG + chr8_2:13957989-13958008 None:intergenic 25.0%
!! TGATGAGGAAGATATTTTAT+GGG + chr8_2:13958001-13958020 None:intergenic 25.0%
!! ATGATGAGGAAGATATTTTA+TGG + chr8_2:13958002-13958021 None:intergenic 25.0%
! AAGAAAAATGGTATATGATG+AGG + chr8_2:13958016-13958035 None:intergenic 25.0%
!!! TCATCATATACCATTTTTCT+TGG - chr8_2:13958015-13958034 Msa1235760:three_prime_UTR 25.0%
! TTATCAAGTCAAATTCTTCT+TGG + chr8_2:13958279-13958298 None:intergenic 25.0%
! TTATTCACAAGAAGAATTAG+AGG - chr8_2:13958330-13958349 Msa1235760:three_prime_UTR 25.0%
! GAAGATAAAGAGAAATTAGA+AGG + chr8_2:13958451-13958470 None:intergenic 25.0%
! TTTCTCATCAACAAAATCAA+TGG - chr8_2:13958524-13958543 Msa1235760:three_prime_UTR 25.0%
!!! CTGAATTTTGAAGATAGAAA+TGG - chr8_2:13958925-13958944 Msa1235760:CDS 25.0%
! AAGATAGAAATGGAAAATTG+TGG - chr8_2:13958935-13958954 Msa1235760:CDS 25.0%
! CAACAATATTCTATTAGATG+GGG - chr8_2:13959195-13959214 Msa1235760:CDS 25.0%
! AAATTCATCTGATTGTGTAA+GGG + chr8_2:13959299-13959318 None:intergenic 25.0%
! AAAATTCATCTGATTGTGTA+AGG + chr8_2:13959300-13959319 None:intergenic 25.0%
! ATGTTTCCATTTCATCAATA+TGG - chr8_2:13959329-13959348 Msa1235760:CDS 25.0%
! CTCATATAAAAAACTGAACT+TGG + chr8_2:13959398-13959417 None:intergenic 25.0%
! CATTACTAGTTAAATTTCCA+TGG + chr8_2:13959553-13959572 None:intergenic 25.0%
!! TTCATTTTCATCATTGTTGT+TGG + chr8_2:13959820-13959839 None:intergenic 25.0%
!!! ATGGTTTTGTTTTTGTCTTT+AGG - chr8_2:13957887-13957906 Msa1235760:three_prime_UTR 25.0%
!!! TGGTTTTGTTTTTGTCTTTA+GGG - chr8_2:13957888-13957907 Msa1235760:three_prime_UTR 25.0%
! AAAGGAAAACAAAGAAAAAG+AGG + chr8_2:13957962-13957981 None:intergenic 25.0%
!! TATTTTATGGGAGAATTATG+AGG + chr8_2:13957989-13958008 None:intergenic 25.0%
!! TGATGAGGAAGATATTTTAT+GGG + chr8_2:13958001-13958020 None:intergenic 25.0%
!! ATGATGAGGAAGATATTTTA+TGG + chr8_2:13958002-13958021 None:intergenic 25.0%
! AAGAAAAATGGTATATGATG+AGG + chr8_2:13958016-13958035 None:intergenic 25.0%
!!! TCATCATATACCATTTTTCT+TGG - chr8_2:13958015-13958034 Msa1235760:three_prime_UTR 25.0%
! TTATCAAGTCAAATTCTTCT+TGG + chr8_2:13958279-13958298 None:intergenic 25.0%
! TTATTCACAAGAAGAATTAG+AGG - chr8_2:13958330-13958349 Msa1235760:three_prime_UTR 25.0%
! GAAGATAAAGAGAAATTAGA+AGG + chr8_2:13958451-13958470 None:intergenic 25.0%
! TTTCTCATCAACAAAATCAA+TGG - chr8_2:13958524-13958543 Msa1235760:three_prime_UTR 25.0%
!!! CTGAATTTTGAAGATAGAAA+TGG - chr8_2:13958925-13958944 Msa1235760:CDS 25.0%
! AAGATAGAAATGGAAAATTG+TGG - chr8_2:13958935-13958954 Msa1235760:CDS 25.0%
! CAACAATATTCTATTAGATG+GGG - chr8_2:13959195-13959214 Msa1235760:CDS 25.0%
! AAATTCATCTGATTGTGTAA+GGG + chr8_2:13959299-13959318 None:intergenic 25.0%
! AAAATTCATCTGATTGTGTA+AGG + chr8_2:13959300-13959319 None:intergenic 25.0%
! ATGTTTCCATTTCATCAATA+TGG - chr8_2:13959329-13959348 Msa1235760:CDS 25.0%
! CTCATATAAAAAACTGAACT+TGG + chr8_2:13959398-13959417 None:intergenic 25.0%
! CATTACTAGTTAAATTTCCA+TGG + chr8_2:13959553-13959572 None:intergenic 25.0%
!! TTCATTTTCATCATTGTTGT+TGG + chr8_2:13959820-13959839 None:intergenic 25.0%
CTTCTCTTAGTCAAATATGA+AGG - chr8_2:13957918-13957937 Msa1235760:three_prime_UTR 30.0%
GATAAAGAGAAATTAGAAGG+TGG + chr8_2:13958448-13958467 None:intergenic 30.0%
! TTATGATGATGAGTTGTTGA+AGG + chr8_2:13958481-13958500 None:intergenic 30.0%
!! TGTTCTTTTTCATGTGTACT+AGG + chr8_2:13958784-13958803 None:intergenic 30.0%
!!! GTTGTTTTGGTATAACCAAA+CGG + chr8_2:13958852-13958871 None:intergenic 30.0%
!! TACTTTTCAGCATGTTGTTT+TGG + chr8_2:13958865-13958884 None:intergenic 30.0%
TCATTTGATGTTGAATCAAG+TGG + chr8_2:13958892-13958911 None:intergenic 30.0%
GATTCAACATCAAATGAGAA+AGG - chr8_2:13958895-13958914 Msa1235760:CDS 30.0%
GGAGATTTAGATACTCTTAT+TGG - chr8_2:13958956-13958975 Msa1235760:CDS 30.0%
! CTTTTGTCATAACATAGCTT+TGG + chr8_2:13958990-13959009 None:intergenic 30.0%
CAAAGCTATGTTATGACAAA+AGG - chr8_2:13958988-13959007 Msa1235760:CDS 30.0%
AAAGAGAAAAAACTTGATGC+TGG - chr8_2:13959027-13959046 Msa1235760:CDS 30.0%
ATAGGTTGTTTATAGATTGG+AGG - chr8_2:13959094-13959113 Msa1235760:CDS 30.0%
! TGTTGATTAGGAAGAAAGAA+AGG + chr8_2:13959177-13959196 None:intergenic 30.0%
TTTCCATTTCATCAATATGG+TGG - chr8_2:13959332-13959351 Msa1235760:CDS 30.0%
! TGATGATGATAATGAGAAAC+AGG + chr8_2:13959530-13959549 None:intergenic 30.0%
TTCAACAAGTGATGATAACT+TGG - chr8_2:13959649-13959668 Msa1235760:intron 30.0%
AACATCAACAAGATTTGAAG+AGG - chr8_2:13959730-13959749 Msa1235760:intron 30.0%
! GAAGAAGCTTCAATGATTTT+TGG - chr8_2:13959764-13959783 Msa1235760:intron 30.0%
CTTCTCTTAGTCAAATATGA+AGG - chr8_2:13957918-13957937 Msa1235760:three_prime_UTR 30.0%
GATAAAGAGAAATTAGAAGG+TGG + chr8_2:13958448-13958467 None:intergenic 30.0%
! TTATGATGATGAGTTGTTGA+AGG + chr8_2:13958481-13958500 None:intergenic 30.0%
!! TGTTCTTTTTCATGTGTACT+AGG + chr8_2:13958784-13958803 None:intergenic 30.0%
!!! GTTGTTTTGGTATAACCAAA+CGG + chr8_2:13958852-13958871 None:intergenic 30.0%
!! TACTTTTCAGCATGTTGTTT+TGG + chr8_2:13958865-13958884 None:intergenic 30.0%
TCATTTGATGTTGAATCAAG+TGG + chr8_2:13958892-13958911 None:intergenic 30.0%
GATTCAACATCAAATGAGAA+AGG - chr8_2:13958895-13958914 Msa1235760:CDS 30.0%
GGAGATTTAGATACTCTTAT+TGG - chr8_2:13958956-13958975 Msa1235760:CDS 30.0%
! CTTTTGTCATAACATAGCTT+TGG + chr8_2:13958990-13959009 None:intergenic 30.0%
CAAAGCTATGTTATGACAAA+AGG - chr8_2:13958988-13959007 Msa1235760:CDS 30.0%
AAAGAGAAAAAACTTGATGC+TGG - chr8_2:13959027-13959046 Msa1235760:CDS 30.0%
ATAGGTTGTTTATAGATTGG+AGG - chr8_2:13959094-13959113 Msa1235760:CDS 30.0%
! TGTTGATTAGGAAGAAAGAA+AGG + chr8_2:13959177-13959196 None:intergenic 30.0%
TTTCCATTTCATCAATATGG+TGG - chr8_2:13959332-13959351 Msa1235760:CDS 30.0%
! TGATGATGATAATGAGAAAC+AGG + chr8_2:13959530-13959549 None:intergenic 30.0%
TTCAACAAGTGATGATAACT+TGG - chr8_2:13959649-13959668 Msa1235760:intron 30.0%
AACATCAACAAGATTTGAAG+AGG - chr8_2:13959730-13959749 Msa1235760:intron 30.0%
! GAAGAAGCTTCAATGATTTT+TGG - chr8_2:13959764-13959783 Msa1235760:intron 30.0%
AAAGAGGTTCATGTAAGAGT+CGG + chr8_2:13957946-13957965 None:intergenic 35.0%
AAATTGTATATGATGAGGGG+AGG + chr8_2:13958188-13958207 None:intergenic 35.0%
CATCAACAAAATCAATGGCT+AGG - chr8_2:13958529-13958548 Msa1235760:exon 35.0%
GATTTCATGGAATTGTCACT+AGG - chr8_2:13958682-13958701 Msa1235760:CDS 35.0%
!! TGTTCTTGTTCTTGTTGTTG+TGG + chr8_2:13958757-13958776 None:intergenic 35.0%
TTGTAACACCAAGTGATGTT+GGG - chr8_2:13958818-13958837 Msa1235760:CDS 35.0%
! TTTAGTTTCCCAACATCACT+TGG + chr8_2:13958829-13958848 None:intergenic 35.0%
GCTATGTTATGACAAAAGGT+TGG - chr8_2:13958992-13959011 Msa1235760:CDS 35.0%
GACATTGTTTCATTTCAACG+CGG - chr8_2:13959051-13959070 Msa1235760:CDS 35.0%
GGCATAGGTTGTTTATAGAT+TGG - chr8_2:13959091-13959110 Msa1235760:CDS 35.0%
CAATATTCTATTAGATGGGG+AGG - chr8_2:13959198-13959217 Msa1235760:CDS 35.0%
TCTCATTATCATCATCACCA+TGG - chr8_2:13959533-13959552 Msa1235760:CDS 35.0%
GCTACTACTAGTACTACTAA+TGG - chr8_2:13959572-13959591 Msa1235760:CDS 35.0%
GCAAAAAGGTTAAGGTTGTT+TGG - chr8_2:13959599-13959618 Msa1235760:intron 35.0%
AGTGATGGTACTATTGAAGA+AGG + chr8_2:13959680-13959699 None:intergenic 35.0%
ACCATCACTTCAACATTTGA+AGG - chr8_2:13959691-13959710 Msa1235760:intron 35.0%
ACCTTCAAATGTTGAAGTGA+TGG + chr8_2:13959695-13959714 None:intergenic 35.0%
GTTGATGTTTCTTCATGATG+AGG + chr8_2:13959719-13959738 None:intergenic 35.0%
AAAGAGGTTCATGTAAGAGT+CGG + chr8_2:13957946-13957965 None:intergenic 35.0%
AAATTGTATATGATGAGGGG+AGG + chr8_2:13958188-13958207 None:intergenic 35.0%
CATCAACAAAATCAATGGCT+AGG - chr8_2:13958529-13958548 Msa1235760:exon 35.0%
GATTTCATGGAATTGTCACT+AGG - chr8_2:13958682-13958701 Msa1235760:CDS 35.0%
!! TGTTCTTGTTCTTGTTGTTG+TGG + chr8_2:13958757-13958776 None:intergenic 35.0%
TTGTAACACCAAGTGATGTT+GGG - chr8_2:13958818-13958837 Msa1235760:CDS 35.0%
! TTTAGTTTCCCAACATCACT+TGG + chr8_2:13958829-13958848 None:intergenic 35.0%
GCTATGTTATGACAAAAGGT+TGG - chr8_2:13958992-13959011 Msa1235760:CDS 35.0%
GACATTGTTTCATTTCAACG+CGG - chr8_2:13959051-13959070 Msa1235760:CDS 35.0%
GGCATAGGTTGTTTATAGAT+TGG - chr8_2:13959091-13959110 Msa1235760:CDS 35.0%
CAATATTCTATTAGATGGGG+AGG - chr8_2:13959198-13959217 Msa1235760:CDS 35.0%
TCTCATTATCATCATCACCA+TGG - chr8_2:13959533-13959552 Msa1235760:CDS 35.0%
GCTACTACTAGTACTACTAA+TGG - chr8_2:13959572-13959591 Msa1235760:CDS 35.0%
GCAAAAAGGTTAAGGTTGTT+TGG - chr8_2:13959599-13959618 Msa1235760:intron 35.0%
AGTGATGGTACTATTGAAGA+AGG + chr8_2:13959680-13959699 None:intergenic 35.0%
ACCATCACTTCAACATTTGA+AGG - chr8_2:13959691-13959710 Msa1235760:intron 35.0%
ACCTTCAAATGTTGAAGTGA+TGG + chr8_2:13959695-13959714 None:intergenic 35.0%
GTTGATGTTTCTTCATGATG+AGG + chr8_2:13959719-13959738 None:intergenic 35.0%
GGAGAATTATGAGGCTGTAA+AGG + chr8_2:13957980-13957999 None:intergenic 40.0%
CACAATTCAGCAGCATCTAA+AGG - chr8_2:13958586-13958605 Msa1235760:CDS 40.0%
AATTCAGCAGCATCTAAAGG+AGG - chr8_2:13958589-13958608 Msa1235760:CDS 40.0%
CAGCATCTAAAGGAGGATTA+GGG - chr8_2:13958596-13958615 Msa1235760:CDS 40.0%
! TTGCATCTTGATGTTGGTGA+TGG + chr8_2:13958630-13958649 None:intergenic 40.0%
AGGTTGTTGCATCTTGATGT+TGG + chr8_2:13958636-13958655 None:intergenic 40.0%
!! TGTTCTTGTTGTTGTGGAAC+AGG + chr8_2:13958751-13958770 None:intergenic 40.0%
GTTGTAACACCAAGTGATGT+TGG - chr8_2:13958817-13958836 Msa1235760:CDS 40.0%
TGTTGGGAAACTAAACCGTT+TGG - chr8_2:13958834-13958853 Msa1235760:CDS 40.0%
!! GTGAAAAGTGTTGCTGATGA+AGG + chr8_2:13959153-13959172 None:intergenic 40.0%
TTCCTTATCCAACACCACAA+AGG - chr8_2:13959244-13959263 Msa1235760:CDS 40.0%
! AACCTTTGTGGTGTTGGATA+AGG + chr8_2:13959249-13959268 None:intergenic 40.0%
TGTTGTAACCTTTGTGGTGT+TGG + chr8_2:13959255-13959274 None:intergenic 40.0%
TGCTGATGTTGTAACCTTTG+TGG + chr8_2:13959261-13959280 None:intergenic 40.0%
CCACCACCATATTGATGAAA+TGG + chr8_2:13959338-13959357 None:intergenic 40.0%
CCATTTCATCAATATGGTGG+TGG - chr8_2:13959335-13959354 Msa1235760:CDS 40.0%
AGTACAAGACAGCAACAAGA+AGG - chr8_2:13959458-13959477 Msa1235760:CDS 40.0%
!! CTACTAATGGTGCTGCAAAA+AGG - chr8_2:13959585-13959604 Msa1235760:intron 40.0%
!! ATGGTGCTGCAAAAAGGTTA+AGG - chr8_2:13959591-13959610 Msa1235760:intron 40.0%
!! AAGGTTGTTTGGTGTGAACA+TGG - chr8_2:13959610-13959629 Msa1235760:intron 40.0%
GGAGAATTATGAGGCTGTAA+AGG + chr8_2:13957980-13957999 None:intergenic 40.0%
CACAATTCAGCAGCATCTAA+AGG - chr8_2:13958586-13958605 Msa1235760:CDS 40.0%
AATTCAGCAGCATCTAAAGG+AGG - chr8_2:13958589-13958608 Msa1235760:CDS 40.0%
CAGCATCTAAAGGAGGATTA+GGG - chr8_2:13958596-13958615 Msa1235760:CDS 40.0%
! TTGCATCTTGATGTTGGTGA+TGG + chr8_2:13958630-13958649 None:intergenic 40.0%
AGGTTGTTGCATCTTGATGT+TGG + chr8_2:13958636-13958655 None:intergenic 40.0%
!! TGTTCTTGTTGTTGTGGAAC+AGG + chr8_2:13958751-13958770 None:intergenic 40.0%
GTTGTAACACCAAGTGATGT+TGG - chr8_2:13958817-13958836 Msa1235760:CDS 40.0%
TGTTGGGAAACTAAACCGTT+TGG - chr8_2:13958834-13958853 Msa1235760:CDS 40.0%
!! GTGAAAAGTGTTGCTGATGA+AGG + chr8_2:13959153-13959172 None:intergenic 40.0%
TTCCTTATCCAACACCACAA+AGG - chr8_2:13959244-13959263 Msa1235760:CDS 40.0%
! AACCTTTGTGGTGTTGGATA+AGG + chr8_2:13959249-13959268 None:intergenic 40.0%
TGTTGTAACCTTTGTGGTGT+TGG + chr8_2:13959255-13959274 None:intergenic 40.0%
TGCTGATGTTGTAACCTTTG+TGG + chr8_2:13959261-13959280 None:intergenic 40.0%
CCACCACCATATTGATGAAA+TGG + chr8_2:13959338-13959357 None:intergenic 40.0%
CCATTTCATCAATATGGTGG+TGG - chr8_2:13959335-13959354 Msa1235760:CDS 40.0%
AGTACAAGACAGCAACAAGA+AGG - chr8_2:13959458-13959477 Msa1235760:CDS 40.0%
!! CTACTAATGGTGCTGCAAAA+AGG - chr8_2:13959585-13959604 Msa1235760:intron 40.0%
!! ATGGTGCTGCAAAAAGGTTA+AGG - chr8_2:13959591-13959610 Msa1235760:intron 40.0%
!! AAGGTTGTTTGGTGTGAACA+TGG - chr8_2:13959610-13959629 Msa1235760:intron 40.0%
GCTGCTGAATTGTGAGATTC+TGG + chr8_2:13958580-13958599 None:intergenic 45.0%
GCAGCATCTAAAGGAGGATT+AGG - chr8_2:13958595-13958614 Msa1235760:CDS 45.0%
!! TCTTGTTGTTGTGGAACAGG+AGG + chr8_2:13958748-13958767 None:intergenic 45.0%
TCGGCGAATTGTTTAGGCAT+AGG - chr8_2:13959076-13959095 Msa1235760:CDS 45.0%
!! CTTCCTTGAGGCATTGATGA+TGG + chr8_2:13959434-13959453 None:intergenic 45.0%
CTTGTACTCAAGCTTCCTTG+AGG + chr8_2:13959446-13959465 None:intergenic 45.0%
ACAAGACAGCAACAAGAAGG+AGG - chr8_2:13959461-13959480 Msa1235760:CDS 45.0%
! TTTGGTGTGAACATGGAGTG+TGG - chr8_2:13959617-13959636 Msa1235760:intron 45.0%
GCTGCTGAATTGTGAGATTC+TGG + chr8_2:13958580-13958599 None:intergenic 45.0%
GCAGCATCTAAAGGAGGATT+AGG - chr8_2:13958595-13958614 Msa1235760:CDS 45.0%
!! TCTTGTTGTTGTGGAACAGG+AGG + chr8_2:13958748-13958767 None:intergenic 45.0%
TCGGCGAATTGTTTAGGCAT+AGG - chr8_2:13959076-13959095 Msa1235760:CDS 45.0%
!! CTTCCTTGAGGCATTGATGA+TGG + chr8_2:13959434-13959453 None:intergenic 45.0%
CTTGTACTCAAGCTTCCTTG+AGG + chr8_2:13959446-13959465 None:intergenic 45.0%
ACAAGACAGCAACAAGAAGG+AGG - chr8_2:13959461-13959480 Msa1235760:CDS 45.0%
! TTTGGTGTGAACATGGAGTG+TGG - chr8_2:13959617-13959636 Msa1235760:intron 45.0%
!! AAAATATATAAACAAAAAAA+AGG + chr8_2:13958163-13958182 None:intergenic 5.0%
!! AAAATATATAAACAAAAAAA+AGG + chr8_2:13958163-13958182 None:intergenic 5.0%
GTTTCATTTCAACGCGGCGT+CGG - chr8_2:13959057-13959076 Msa1235760:CDS 50.0%
!! TGAGGCATTGATGATGGTGC+TGG + chr8_2:13959428-13959447 None:intergenic 50.0%
GCACCATCATCAATGCCTCA+AGG - chr8_2:13959428-13959447 Msa1235760:CDS 50.0%
AGACAGCAACAAGAAGGAGG+AGG - chr8_2:13959464-13959483 Msa1235760:CDS 50.0%
GTTTCATTTCAACGCGGCGT+CGG - chr8_2:13959057-13959076 Msa1235760:CDS 50.0%
!! TGAGGCATTGATGATGGTGC+TGG + chr8_2:13959428-13959447 None:intergenic 50.0%
GCACCATCATCAATGCCTCA+AGG - chr8_2:13959428-13959447 Msa1235760:CDS 50.0%
AGACAGCAACAAGAAGGAGG+AGG - chr8_2:13959464-13959483 Msa1235760:CDS 50.0%
CAGCAACAAGAAGGAGGAGG+AGG - chr8_2:13959467-13959486 Msa1235760:CDS 55.0%
CAACAAGAAGGAGGAGGAGG+AGG - chr8_2:13959470-13959489 Msa1235760:CDS 55.0%
GGTGTGAACATGGAGTGTGG+TGG - chr8_2:13959620-13959639 Msa1235760:intron 55.0%
CAGCAACAAGAAGGAGGAGG+AGG - chr8_2:13959467-13959486 Msa1235760:CDS 55.0%
CAACAAGAAGGAGGAGGAGG+AGG - chr8_2:13959470-13959489 Msa1235760:CDS 55.0%
GGTGTGAACATGGAGTGTGG+TGG - chr8_2:13959620-13959639 Msa1235760:intron 55.0%
!! GCGGCGTCGGCGAATTGTTT+AGG - chr8_2:13959070-13959089 Msa1235760:CDS 60.0%
!! GCGGCGTCGGCGAATTGTTT+AGG - chr8_2:13959070-13959089 Msa1235760:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 13957887 13959973 13957887 ID=Msa1235760;Name=Msa1235760
chr8_2 mRNA 13957887 13959973 13957887 ID=Msa1235760-mRNA-1;Parent=Msa1235760;Name=Msa1235760-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|0|0.5|1|0|0|2|659|352
chr8_2 exon 13957887 13959596 13957887 ID=Msa1235760-mRNA-1:exon:5353;Parent=Msa1235760-mRNA-1
chr8_2 exon 13959966 13959973 13959966 ID=Msa1235760-mRNA-1:exon:5352;Parent=Msa1235760-mRNA-1
chr8_2 CDS 13959966 13959973 13959966 ID=Msa1235760-mRNA-1:cds;Parent=Msa1235760-mRNA-1
chr8_2 CDS 13958546 13959596 13958546 ID=Msa1235760-mRNA-1:cds;Parent=Msa1235760-mRNA-1
chr8_2 three_prime_UTR 13957887 13958545 13957887 ID=Msa1235760-mRNA-1:three_prime_utr;Parent=Msa1235760-mRNA-1
Gene Sequence

>Msa1235760

ATGGTTTTATTTTGTGAGATCCAAGAAGAATTTGACTTGATAATTATCATGGAGTTGATGCAAGAAGTGAAAGATTATTCACAAGAAGAATTAGAGGAAGATGAAGAAGAAATCATGACAAAAACAACAAGAGAAGAAGAAGAAGAAAGTAGTAGTAAGCAACAATTACAACACTGTACTTTTTCTTCTCCACCTTCTAATTTCTCTTTATCTTCTTCATCTCCTTCAACAACTCATCATCATAATCATAATCATGATGTTACAAATGTTTCTCATCAACAAAATCAATGGCTAGGAATGAATCATCATCATCATCATTCACCAGAATCTCACAATTCAGCAGCATCTAAAGGAGGATTAGGGTTATTACACCATCACCAACATCAAGATGCAACAACCTCAAATTTCACAAATTTAAAGCAAATAGATTTCATGGAATTGTCACTAGGTAACAACAATAACAAAAACAAAGATGTTGTTATTAATGTTCCTCCTGTTCCACAACAACAAGAACAAGAACAACAACCTAGTACACATGAAAAAGAACACATGTTTGACAAAGTTGTAACACCAAGTGATGTTGGGAAACTAAACCGTTTGGTTATACCAAAACAACATGCTGAAAAGTATTTTCCACTTGATTCAACATCAAATGAGAAAGGTCTTCTTCTGAATTTTGAAGATAGAAATGGAAAATTGTGGAGATTTAGATACTCTTATTGGAACAGTAGCCAAAGCTATGTTATGACAAAAGGTTGGAGCCGTTTTGTTAAAGAGAAAAAACTTGATGCTGGTGACATTGTTTCATTTCAACGCGGCGTCGGCGAATTGTTTAGGCATAGGTTGTTTATAGATTGGAGGAGAAGATCTAATCATAATCATCATAATATTGATCCTTCATCAGCAACACTTTTCACTCCTTTCTTTCTTCCTAATCAACAACAATATTCTATTAGATGGGGAGGTGCTAATAGTAGATTTTACTCTCTTCCTTATCCAACACCACAAAGGTTACAACATCAGCAACAAAATCATCATGACCCTTACACAATCAGATGA

Protein sequence

>Msa1235760

MVLFCEIQEEFDLIIIMELMQEVKDYSQEELEEDEEEIMTKTTREEEEESSSKQQLQHCTFSSPPSNFSLSSSSPSTTHHHNHNHDVTNVSHQQNQWLGMNHHHHHSPESHNSAASKGGLGLLHHHQHQDATTSNFTNLKQIDFMELSLGNNNNKNKDVVINVPPVPQQQEQEQQPSTHEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSTSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGVGELFRHRLFIDWRRRSNHNHHNIDPSSATLFTPFFLPNQQQYSIRWGGANSRFYSLPYPTPQRLQHQQQNHHDPYTIR*