AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0239810

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0239810 MtrunA17_Chr2g0290891 100.000 211 0 0 1 211 1 211 5.91e-160 440
Msa0239810 MtrunA17_Chr6g0458081 88.626 211 24 0 1 211 1 211 4.62e-140 390
Msa0239810 MtrunA17_Chr8g0349711 70.561 214 58 2 1 211 1 212 7.03e-110 313
Msa0239810 MtrunA17_Chr8g0349681 66.351 211 66 1 1 211 379 584 1.82e-99 300
Msa0239810 MtrunA17_Chr8g0349681 68.932 206 63 1 1 206 170 374 4.08e-97 293
Msa0239810 MtrunA17_Chr8g0349681 75.625 160 39 0 1 160 8 167 5.64e-84 259
Msa0239810 MtrunA17_Chr2g0283131 48.095 210 105 2 3 211 10 216 2.00e-66 203
Msa0239810 MtrunA17_Chr4g0046261 47.619 210 106 2 3 211 10 216 1.53e-65 201
Msa0239810 MtrunA17_Chr2g0276941 53.073 179 84 0 3 181 12 190 1.03e-64 199
Msa0239810 MtrunA17_Chr4g0040781 47.143 210 107 2 3 211 10 216 1.53e-64 199
Msa0239810 MtrunA17_Chr2g0315551 46.479 213 104 2 3 211 10 216 2.03e-64 198
Msa0239810 MtrunA17_Chr1g0174281 50.000 178 89 0 5 182 14 191 7.78e-64 197
Msa0239810 MtrunA17_Chr2g0319951 55.621 169 75 0 3 171 10 178 1.96e-63 196
Msa0239810 MtrunA17_Chr7g0231131 53.333 165 77 0 5 169 14 178 3.82e-63 195
Msa0239810 MtrunA17_Chr4g0055651 45.455 209 102 1 3 211 5 201 7.20e-62 191
Msa0239810 MtrunA17_Chr2g0325091 46.009 213 104 2 3 211 8 213 9.91e-62 191
Msa0239810 MtrunA17_Chr7g0250531 45.933 209 101 1 3 211 5 201 2.58e-61 190
Msa0239810 MtrunA17_Chr4g0032201 45.755 212 106 3 3 211 9 214 4.81e-61 189
Msa0239810 MtrunA17_Chr1g0212521 46.890 209 104 3 3 210 12 214 5.42e-61 189
Msa0239810 MtrunA17_Chr8g0381841 44.444 216 102 4 5 210 16 223 6.55e-61 189
Msa0239810 MtrunA17_Chr3g0112681 46.226 212 106 2 3 211 9 215 7.42e-61 189
Msa0239810 MtrunA17_Chr4g0030911 46.890 209 103 3 3 210 12 213 1.82e-60 188
Msa0239810 MtrunA17_Chr3g0123821 46.193 197 101 2 5 196 15 211 1.83e-60 188
Msa0239810 MtrunA17_Chr8g0335471 46.411 209 101 2 3 211 5 202 4.59e-59 184
Msa0239810 MtrunA17_Chr7g0214241 43.541 209 114 2 5 211 14 220 4.61e-59 185
Msa0239810 MtrunA17_Chr7g0263071 49.733 187 91 2 3 188 12 196 5.18e-59 184
Msa0239810 MtrunA17_Chr1g0182321 45.455 209 107 4 3 210 12 214 6.10e-59 184
Msa0239810 MtrunA17_Chr1g0182301 44.976 209 108 4 3 210 12 214 2.23e-58 183
Msa0239810 MtrunA17_Chr2g0276931 50.296 169 84 0 3 171 6 174 4.05e-58 182
Msa0239810 MtrunA17_Chr7g0275991 47.179 195 99 1 5 195 19 213 5.24e-58 182
Msa0239810 MtrunA17_Chr8g0351861 51.829 164 79 0 5 168 15 178 5.34e-58 182
Msa0239810 MtrunA17_Chr7g0234201 44.928 207 111 1 5 211 12 215 8.60e-58 181
Msa0239810 MtrunA17_Chr8g0346421 53.165 158 74 0 5 162 25 182 5.79e-57 180
Msa0239810 MtrunA17_Chr6g0482721 45.894 207 110 1 5 211 11 215 3.94e-56 177
Msa0239810 MtrunA17_Chr1g0189361 43.128 211 116 1 5 211 13 223 5.60e-56 177
Msa0239810 MtrunA17_Chr8g0392931 45.794 214 101 3 5 211 13 218 3.86e-53 169
Msa0239810 MtrunA17_Chr2g0327911 45.714 175 93 2 2 174 11 185 3.58e-51 164
Msa0239810 MtrunA17_Chr7g0265001 45.455 209 99 6 7 211 17 214 2.36e-50 162
Msa0239810 MtrunA17_Chr8g0384311 42.925 212 104 6 3 210 10 208 3.95e-50 162
Msa0239810 MtrunA17_Chr1g0159481 42.925 212 107 6 3 211 14 214 7.65e-49 159
Msa0239810 MtrunA17_Chr8g0390561 43.210 162 92 0 8 169 11 172 5.99e-48 155
Msa0239810 MtrunA17_Chr3g0109721 43.312 157 89 0 8 164 12 168 8.13e-47 153
Msa0239810 MtrunA17_Chr3g0130271 49.068 161 78 4 3 160 9 168 1.20e-46 152
Msa0239810 MtrunA17_Chr5g0433561 42.500 160 92 0 8 167 12 171 2.80e-46 151
Msa0239810 MtrunA17_Chr1g0199331 41.772 158 91 1 8 164 33 190 3.27e-46 151
Msa0239810 MtrunA17_Chr1g0197331 49.693 163 77 4 2 160 11 172 4.47e-46 151
Msa0239810 MtrunA17_Chr1g0180291 48.235 170 83 4 3 169 11 178 1.12e-45 150
Msa0239810 MtrunA17_Chr4g0055081 34.286 210 119 2 7 210 10 206 4.71e-44 146
Msa0239810 MtrunA17_Chr8g0382221 38.509 161 99 0 7 167 10 170 3.15e-43 144
Msa0239810 MtrunA17_Chr3g0123971 35.912 181 111 1 7 182 10 190 7.68e-43 143
Msa0239810 MtrunA17_Chr5g0400131 36.264 182 110 1 7 182 10 191 3.09e-42 141
Msa0239810 MtrunA17_Chr6g0466301 38.095 168 97 3 6 166 8 175 3.91e-35 123
Msa0239810 MtrunA17_Chr6g0465491 38.095 168 97 3 6 166 8 175 3.91e-35 123
Msa0239810 MtrunA17_Chr4g0034871 36.683 199 116 4 6 197 8 203 2.25e-34 121
Msa0239810 MtrunA17_Chr8g0383261 37.952 166 96 2 6 164 12 177 5.23e-34 120
Msa0239810 MtrunA17_Chr1g0201121 34.597 211 118 6 6 209 8 205 2.51e-33 119
Msa0239810 MtrunA17_Chr2g0331691 37.654 162 94 3 6 160 10 171 1.50e-31 114
Msa0239810 MtrunA17_Chr4g0004661 37.654 162 94 3 6 160 64 225 3.81e-30 112
Msa0239810 MtrunA17_Chr2g0325101 31.977 172 103 5 1 160 1 170 3.66e-25 97.4
Msa0239810 MtrunA17_Chr6g0486041 32.558 172 102 5 1 160 1 170 3.54e-24 95.1
Msa0239810 MtrunA17_Chr6g0466161 35.762 151 90 3 23 166 7 157 5.07e-24 94.7
Msa0239810 MtrunA17_Chr6g0465471 35.762 151 90 3 23 166 7 157 5.18e-24 94.7
Msa0239810 MtrunA17_Chr4g0037021 32.558 172 102 6 1 160 1 170 1.55e-22 90.5
Msa0239810 MtrunA17_Chr3g0117931 30.168 179 111 5 6 172 8 184 1.21e-21 88.6
Msa0239810 MtrunA17_Chr3g0138101 31.646 158 105 2 7 164 14 168 2.84e-21 87.8
Msa0239810 MtrunA17_Chr3g0138121 31.646 158 105 2 7 164 14 168 2.96e-21 87.8
Msa0239810 MtrunA17_Chr3g0138111 31.646 158 105 2 7 164 14 168 3.32e-21 87.4
Msa0239810 MtrunA17_Chr8g0371501 28.488 172 109 5 1 160 1 170 8.89e-21 85.9
Msa0239810 MtrunA17_Chr5g0405791 27.907 172 110 5 1 160 1 170 4.62e-20 84.0
Msa0239810 MtrunA17_Chr4g0046211 33.065 124 80 3 1 123 1 122 8.30e-19 79.3
Msa0239810 MtrunA17_Chr8g0349691 73.810 42 11 0 1 42 1 42 5.62e-18 74.3
Msa0239810 MtrunA17_Chr6g0466431 35.789 95 52 1 6 100 8 93 4.86e-17 73.6
Msa0239810 MtrunA17_Chr6g0465611 35.789 95 52 1 6 100 8 93 4.86e-17 73.6
Msa0239810 MtrunA17_Chr2g0331841 43.103 58 33 0 75 132 2 59 2.75e-13 63.5
Msa0239810 MtrunA17_Chr1g0178291 32.075 159 98 5 2 160 427 575 3.13e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0239810 AT4G17170.1 97.143 210 6 0 1 210 1 210 7.96e-155 427
Msa0239810 AT4G35860.1 85.238 210 31 0 1 210 1 210 1.30e-136 381
Msa0239810 AT4G17160.1 78.673 211 37 2 1 210 1 204 8.49e-121 341
Msa0239810 AT4G35860.2 81.707 164 30 0 47 210 1 164 1.56e-100 288
Msa0239810 AT5G45750.1 46.479 213 103 2 3 211 10 215 7.37e-66 202
Msa0239810 AT5G60860.1 48.095 210 105 2 3 211 10 216 9.15e-66 202
Msa0239810 AT3G12160.1 47.393 211 101 2 5 210 14 219 2.39e-64 199
Msa0239810 AT4G18430.1 48.095 210 105 2 3 211 10 216 3.76e-64 198
Msa0239810 AT3G15060.1 47.368 209 108 1 3 211 10 216 8.25e-64 197
Msa0239810 AT2G33870.1 47.664 214 101 3 3 211 10 217 1.33e-63 196
Msa0239810 AT5G47960.1 48.077 208 105 2 5 210 14 220 4.14e-63 196
Msa0239810 AT1G28550.1 47.664 214 101 3 3 211 10 217 4.51e-63 195
Msa0239810 AT1G06400.1 47.418 213 101 2 3 211 10 215 1.71e-62 194
Msa0239810 AT4G39990.1 46.698 212 103 3 5 211 16 222 2.34e-62 194
Msa0239810 AT1G07410.1 45.755 212 105 2 3 211 9 213 3.44e-62 193
Msa0239810 AT4G18800.1 45.972 211 105 2 3 211 10 213 4.82e-62 192
Msa0239810 AT1G16920.1 53.293 167 78 0 3 169 10 176 8.01e-62 192
Msa0239810 AT1G02130.1 45.933 209 102 1 3 211 5 202 1.26e-61 191
Msa0239810 AT4G17530.1 46.411 209 100 2 3 211 5 201 1.50e-61 191
Msa0239810 AT1G09630.1 45.455 209 112 1 3 211 9 215 3.23e-61 191
Msa0239810 AT5G65270.1 46.479 213 106 3 5 211 16 226 1.04e-60 189
Msa0239810 AT3G46830.1 53.846 169 78 0 3 171 9 177 1.08e-60 189
Msa0239810 AT3G46830.2 53.846 169 78 0 3 171 9 177 1.08e-60 189
Msa0239810 AT5G59150.1 45.755 212 108 2 3 211 9 216 7.50e-60 187
Msa0239810 AT3G11730.1 47.847 209 98 3 3 210 5 203 8.43e-60 186
Msa0239810 AT5G47200.1 45.933 209 101 2 3 211 5 201 8.75e-60 186
Msa0239810 AT3G09900.1 45.714 210 108 3 3 211 12 216 9.76e-59 184
Msa0239810 AT5G59840.1 46.411 209 105 3 3 210 12 214 2.44e-58 183
Msa0239810 AT3G46060.2 46.411 209 105 3 3 210 12 214 2.94e-58 183
Msa0239810 AT3G46060.3 46.411 209 105 3 3 210 12 214 2.94e-58 183
Msa0239810 AT3G46060.1 46.411 209 105 3 3 210 12 214 2.94e-58 183
Msa0239810 AT2G43130.1 45.411 207 109 2 5 211 11 213 3.22e-58 183
Msa0239810 AT5G03520.1 45.714 210 106 3 3 211 12 214 4.03e-58 182
Msa0239810 AT3G53610.2 44.976 209 108 3 3 210 12 214 1.17e-57 181
Msa0239810 AT3G53610.3 44.976 209 108 3 3 210 12 214 1.17e-57 181
Msa0239810 AT3G53610.1 44.976 209 108 3 3 210 12 214 1.17e-57 181
Msa0239810 AT5G47520.1 46.047 215 101 3 5 211 13 220 1.07e-56 179
Msa0239810 AT3G07410.1 43.961 207 115 1 5 211 11 216 1.66e-56 178
Msa0239810 AT1G05810.1 42.788 208 116 2 5 211 11 216 3.40e-56 178
Msa0239810 AT2G31680.1 44.019 209 113 2 5 211 11 217 4.65e-56 177
Msa0239810 AT1G05810.2 42.788 208 116 2 5 211 57 262 8.88e-56 178
Msa0239810 AT1G18200.1 47.668 193 94 1 5 190 12 204 3.77e-55 176
Msa0239810 AT1G73640.1 51.497 167 81 0 5 171 12 178 2.17e-54 174
Msa0239810 AT1G01200.1 49.405 168 84 1 5 171 27 194 6.76e-54 172
Msa0239810 AT1G43890.3 51.875 160 74 3 3 160 10 168 8.34e-51 164
Msa0239810 AT1G43890.1 51.875 160 74 3 3 160 10 168 8.34e-51 164
Msa0239810 AT1G43890.2 51.875 160 74 3 3 160 10 168 8.34e-51 164
Msa0239810 AT5G45130.1 38.235 204 111 3 8 211 12 200 1.11e-46 153
Msa0239810 AT5G03530.2 49.123 171 80 4 3 169 10 177 1.57e-46 153
Msa0239810 AT5G03530.1 49.123 171 80 4 3 169 10 177 1.57e-46 153
Msa0239810 AT4G19640.1 42.675 157 90 0 8 164 12 168 4.60e-46 151
Msa0239810 AT5G45130.2 38.119 202 110 4 10 211 22 208 7.13e-46 151
Msa0239810 AT3G54840.1 41.558 154 89 1 8 160 35 188 1.55e-44 147
Msa0239810 AT3G54840.2 41.558 154 89 1 8 160 35 188 1.79e-44 147
Msa0239810 AT3G54840.3 41.447 152 88 1 10 160 3 154 3.04e-44 145
Msa0239810 AT5G59150.2 44.910 167 85 2 48 211 3 165 9.97e-44 144
Msa0239810 AT4G39890.1 40.123 162 96 1 7 167 10 171 1.15e-43 145
Msa0239810 AT5G10260.1 38.509 161 99 0 7 167 10 170 1.46e-43 145
Msa0239810 AT5G03520.2 43.023 172 90 3 41 211 40 204 2.68e-43 144
Msa0239810 AT2G22290.1 37.267 161 101 0 7 167 10 170 2.32e-41 139
Msa0239810 AT2G44610.1 34.615 182 113 1 7 182 10 191 1.97e-40 137
Msa0239810 AT5G64990.1 37.888 161 100 0 7 167 8 168 3.51e-40 136
Msa0239810 AT3G09910.5 43.429 175 92 4 3 173 10 181 1.43e-38 132
Msa0239810 AT3G09910.4 43.429 175 92 4 3 173 10 181 1.43e-38 132
Msa0239810 AT5G64990.2 36.310 168 100 1 7 167 8 175 2.10e-37 129
Msa0239810 AT3G09910.3 44.379 169 87 4 3 167 10 175 2.81e-37 129
Msa0239810 AT3G09910.1 44.379 169 87 4 3 167 10 175 2.81e-37 129
Msa0239810 AT3G09910.2 44.379 169 87 4 3 167 10 175 2.81e-37 129
Msa0239810 AT3G18820.1 40.123 162 90 3 6 160 8 169 2.62e-34 121
Msa0239810 AT2G21880.1 39.157 166 94 3 6 164 9 174 9.78e-34 120
Msa0239810 AT1G22740.1 37.423 163 95 3 6 161 8 170 3.48e-33 118
Msa0239810 AT4G09720.1 38.690 168 96 3 6 166 8 175 3.92e-33 118
Msa0239810 AT5G39620.1 38.182 165 95 3 7 164 6 170 5.03e-33 118
Msa0239810 AT4G19640.2 38.583 127 78 0 8 134 12 138 8.62e-33 115
Msa0239810 AT1G52280.1 38.889 162 92 3 6 160 8 169 1.05e-32 117
Msa0239810 AT1G49300.2 38.650 163 93 3 6 161 8 170 1.11e-32 117
Msa0239810 AT1G49300.1 38.650 163 93 3 6 161 8 170 1.11e-32 117
Msa0239810 AT4G19640.3 38.168 131 81 0 8 138 12 142 1.40e-32 116
Msa0239810 AT4G09720.4 38.728 173 94 4 6 166 8 180 4.29e-32 116
Msa0239810 AT4G09720.3 37.430 179 94 4 6 166 8 186 3.85e-31 114
Msa0239810 AT3G16100.1 37.654 162 94 3 6 160 8 169 6.25e-31 112
Msa0239810 AT2G21880.4 37.415 147 85 3 25 164 3 149 1.63e-25 98.2
Msa0239810 AT2G21880.3 37.415 147 85 3 25 164 3 149 1.63e-25 98.2
Msa0239810 AT5G46025.1 44.340 106 58 1 67 171 5 110 7.72e-25 94.4
Msa0239810 AT2G21880.2 34.337 166 94 4 6 164 9 166 5.29e-24 94.7
Msa0239810 AT4G28950.1 31.765 170 104 5 1 160 1 168 6.86e-24 94.7
Msa0239810 AT4G35020.1 33.140 172 101 5 1 160 1 170 8.52e-24 94.4
Msa0239810 AT4G35020.2 33.140 172 101 5 1 160 1 170 8.52e-24 94.4
Msa0239810 AT4G35020.3 33.140 172 101 5 1 160 1 170 8.52e-24 94.4
Msa0239810 AT4G09720.6 38.235 136 77 3 38 166 6 141 3.24e-23 92.0
Msa0239810 AT4G09720.5 38.235 136 77 3 38 166 6 141 3.24e-23 92.0
Msa0239810 AT4G09720.2 38.235 136 77 3 38 166 6 141 3.24e-23 92.0
Msa0239810 AT1G75840.1 30.814 172 105 5 1 160 1 170 5.30e-23 92.0
Msa0239810 AT5G45970.1 30.814 172 105 5 1 160 1 170 1.05e-22 91.3
Msa0239810 AT2G44690.1 31.737 167 100 5 6 160 18 182 2.43e-22 90.5
Msa0239810 AT1G20090.1 29.940 167 103 5 6 160 5 169 6.14e-22 89.4
Msa0239810 AT5G20020.1 31.646 158 105 2 7 164 14 168 3.42e-21 87.8
Msa0239810 AT5G55190.1 31.646 158 105 2 7 164 14 168 4.31e-21 87.8
Msa0239810 AT5G20010.1 31.646 158 105 2 7 164 14 168 4.45e-21 87.4
Msa0239810 AT3G51300.1 28.488 172 109 5 1 160 1 170 8.85e-21 86.3
Msa0239810 AT3G48040.1 30.409 171 105 5 2 160 4 172 1.18e-20 86.3
Msa0239810 AT5G55080.1 30.435 161 109 2 7 167 14 171 2.49e-20 85.5
Msa0239810 AT2G17800.2 28.488 172 109 5 1 160 1 170 7.09e-20 84.0
Msa0239810 AT2G17800.1 28.488 172 109 5 1 160 1 170 7.09e-20 84.0
Msa0239810 AT5G62880.1 29.825 171 106 5 2 160 4 172 8.73e-20 84.0
Msa0239810 AT4G35950.1 27.907 172 110 5 1 160 1 170 3.45e-19 82.0
Msa0239810 AT5G62880.2 29.518 166 103 5 6 159 8 171 4.58e-18 79.0
Msa0239810 AT3G48040.2 29.814 161 99 5 6 154 8 166 6.67e-18 78.2
Msa0239810 AT4G35020.4 33.058 121 78 3 1 120 1 119 5.75e-16 72.4
Msa0239810 AT4G35020.5 33.058 121 78 3 1 120 1 119 5.75e-16 72.4
Msa0239810 AT4G08190.1 48.438 64 30 1 97 160 67 127 3.52e-12 61.6
Msa0239810 AT3G51290.2 26.400 125 79 4 48 160 648 771 8.49e-11 61.2

Find 66 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCTTTCTGTCTTCTCTTC+TGG 0.117460 2_2:+14398710 Msa0239810:three_prime_UTR
TTCTGTTGAAATATAATTCT+TGG 0.206363 2_2:+14398894 Msa0239810:three_prime_UTR
AGCCAATCAAGTTGCAAATA+TGG 0.213769 2_2:+14396194 Msa0239810:CDS
TGATAAATTTATGGCCTTTA+CGG 0.222801 2_2:-14398928 None:intergenic
TTCTTTCTGTCTTCTCTTCT+GGG 0.232078 2_2:+14398711 Msa0239810:three_prime_UTR
TTCATATGCTTGCAGTCTTA+TGG 0.237130 2_2:+14398567 Msa0239810:intron
TCTGTCTTCTCTTCTGGGTT+TGG 0.273808 2_2:+14398716 Msa0239810:three_prime_UTR
TTGACCATCGGTGTTGAATT+TGG 0.325534 2_2:+14396145 Msa0239810:CDS
GTAGGGTATGGTGGAATTCC+TGG 0.327891 2_2:+14398597 Msa0239810:CDS
GAAAGAAAGAAAGAAAGAAA+AGG 0.328211 2_2:-14395215 None:intergenic
AAAGAAAGAAAGAAAGAAAA+GGG 0.331498 2_2:-14395214 None:intergenic
TACATCATCATCGGCGATAC+TGG 0.349931 2_2:+14395316 Msa0239810:CDS
GGCCCTTCTGCTGCGGGTGG+AGG 0.361206 2_2:+14398639 Msa0239810:CDS
CAGCCTCCACCCGCAGCAGA+AGG 0.362111 2_2:-14398642 None:intergenic
TCCCATATTTGCAACTTGAT+TGG 0.379893 2_2:-14396196 None:intergenic
GGTGGAATTCCTGGACCATC+TGG 0.382675 2_2:+14398606 Msa0239810:CDS
AGAACTACATTGAAGCAAAT+AGG 0.396523 2_2:-14398692 None:intergenic
AGGGATGGCCCTTCTGCTGC+GGG 0.401144 2_2:+14398633 Msa0239810:CDS
GCCAATCAAGTTGCAAATAT+GGG 0.406809 2_2:+14396195 Msa0239810:CDS
AACAGTTTGCAAAGGAGAAC+GGG 0.430066 2_2:+14398053 Msa0239810:CDS
CATTTAATCACTTAGCTAGC+TGG 0.445587 2_2:+14397927 Msa0239810:CDS
CAGTCTTATGGAATAAAAGT+AGG 0.450766 2_2:+14398579 Msa0239810:intron
TCGCTGGAAACTCTATCATT+CGG 0.464821 2_2:+14395119 Msa0239810:five_prime_UTR
CCGATGGTCAAGTCATGAAC+AGG 0.483056 2_2:-14396133 None:intergenic
AATATGACAATTATGCTGAT+TGG 0.496339 2_2:+14397980 Msa0239810:CDS
TCATATTACAGAGGAGCTGC+AGG 0.498390 2_2:+14397213 Msa0239810:CDS
TCCTGGACCATCTGGAGGTA+GGG 0.509121 2_2:+14398614 Msa0239810:CDS
CTTAATTAATGGTATAGAGC+AGG 0.511733 2_2:+14394992 None:intergenic
GAAGCAAGGAACTTAGATAG+AGG 0.513312 2_2:+14395050 Msa0239810:five_prime_UTR
GGACCATCTGGAGGTAGGGA+TGG 0.519816 2_2:+14398618 Msa0239810:CDS
GGAATAAAAGTAGGGTATGG+TGG 0.519922 2_2:+14398588 Msa0239810:CDS
GATGGCCCTTCTGCTGCGGG+TGG 0.524107 2_2:+14398636 Msa0239810:CDS
CAAGTTGCAAATATGGGATA+CGG 0.527831 2_2:+14396201 Msa0239810:CDS
TGGCATTAGACTAGCCGTAA+AGG 0.528762 2_2:+14398914 Msa0239810:three_prime_UTR
TATGGAATAAAAGTAGGGTA+TGG 0.533226 2_2:+14398585 Msa0239810:CDS
TAGGGATGGCCCTTCTGCTG+CGG 0.533754 2_2:+14398632 Msa0239810:CDS
GAACAGTTTGCAAAGGAGAA+CGG 0.544908 2_2:+14398052 Msa0239810:CDS
AGCCTCCACCCGCAGCAGAA+GGG 0.547873 2_2:-14398641 None:intergenic
AACTGCTCAGAATGTTGAAG+AGG 0.551651 2_2:+14398102 Msa0239810:CDS
CTCTTCAAATACATCATCAT+CGG 0.552415 2_2:+14395307 Msa0239810:CDS
AAGCAAGGAACTTAGATAGA+GGG 0.555718 2_2:+14395051 Msa0239810:five_prime_UTR
CGGGCTGTAAGCACGGAAGA+AGG 0.556486 2_2:+14398028 Msa0239810:CDS
TGACCTTGTGATAGATCTGA+AGG 0.556542 2_2:-14397193 None:intergenic
TCCCTACCTCCAGATGGTCC+AGG 0.559719 2_2:-14398615 None:intergenic
CTTGATTGGCTTGTTATCGA+TGG 0.560209 2_2:-14396182 None:intergenic
TAATCACTTAGCTAGCTGGT+TGG 0.562132 2_2:+14397931 Msa0239810:CDS
GTGTGATCTTGCTCACAGAC+GGG 0.563085 2_2:+14398009 Msa0239810:CDS
TGTGTGTATTATTGCCTCGC+TGG 0.566125 2_2:+14395103 Msa0239810:five_prime_UTR
TGCTTGTTTATGATATAACC+AGG 0.573499 2_2:+14397241 Msa0239810:CDS
AGTCTTATGGAATAAAAGTA+GGG 0.573741 2_2:+14398580 Msa0239810:intron
CGATGATGATGTATTTGAAG+AGG 0.579909 2_2:-14395306 None:intergenic
AGTGTGATCTTGCTCACAGA+CGG 0.590726 2_2:+14398008 Msa0239810:CDS
TCACAGACGGGCTGTAAGCA+CGG 0.591546 2_2:+14398021 Msa0239810:CDS
CCTGTTCATGACTTGACCAT+CGG 0.602736 2_2:+14396133 Msa0239810:CDS
TTCCTGGACCATCTGGAGGT+AGG 0.607438 2_2:+14398613 Msa0239810:CDS
CTAGCTGGTTGGAAGATGCA+AGG 0.612086 2_2:+14397942 Msa0239810:CDS
TCGGTGTTGAATTTGGTGCT+AGG 0.624612 2_2:+14396152 Msa0239810:CDS
AGCACCAAATTCAACACCGA+TGG 0.625004 2_2:-14396149 None:intergenic
AGGGAAGAAGGAAGTTGTCA+CGG 0.626381 2_2:+14395026 Msa0239810:five_prime_UTR
GAAGTTGTCACGGAGAAGCA+AGG 0.641524 2_2:+14395036 Msa0239810:five_prime_UTR
AGAAGGTGAACAGTTTGCAA+AGG 0.650461 2_2:+14398045 Msa0239810:CDS
GGAATTCCTGGACCATCTGG+AGG 0.651030 2_2:+14398609 Msa0239810:CDS
GGGCCATCCCTACCTCCAGA+TGG 0.652411 2_2:-14398621 None:intergenic
AATCCTTCAGATCTATCACA+AGG 0.690302 2_2:+14397190 Msa0239810:CDS
ATCACAAGGTCATATTACAG+AGG 0.702668 2_2:+14397204 Msa0239810:CDS
GAATGATAGAGTTTCCAGCG+AGG 0.795184 2_2:-14395117 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTATATTTACATAGTTT+AGG + chr2_2:14395779-14395798 Msa0239810:intron 10.0%
!! TATTATATTTACATAGTTTA+GGG + chr2_2:14395780-14395799 Msa0239810:intron 10.0%
!! TATATACATGAAATAAATTA+TGG + chr2_2:14396707-14396726 Msa0239810:intron 10.0%
!! AGATTGTATTATAAAAATAA+AGG - chr2_2:14398463-14398482 None:intergenic 10.0%
!! TGATAAAAAGATATTAGAAA+GGG - chr2_2:14395358-14395377 None:intergenic 15.0%
!! TTGATAAAAAGATATTAGAA+AGG - chr2_2:14395359-14395378 None:intergenic 15.0%
!!! ATTTATTCATTTTTCTTTTC+AGG + chr2_2:14395445-14395464 Msa0239810:intron 15.0%
!!! TTTATTCATTTTTCTTTTCA+GGG + chr2_2:14395446-14395465 Msa0239810:intron 15.0%
!! TTAACAAAATACAAATCAAA+CGG - chr2_2:14395980-14395999 None:intergenic 15.0%
!!! TAATTATGAAGTTTAAGTTT+TGG + chr2_2:14395997-14396016 Msa0239810:intron 15.0%
!!! ATTATTTTATGTTGATTCAT+TGG + chr2_2:14396441-14396460 Msa0239810:intron 15.0%
!!! AAAGATTTTATCTAATAGAT+GGG + chr2_2:14396792-14396811 Msa0239810:intron 15.0%
!!! GAAAATAGTTATTGTATTTT+GGG - chr2_2:14397306-14397325 None:intergenic 15.0%
!!! TGAAAATAGTTATTGTATTT+TGG - chr2_2:14397307-14397326 None:intergenic 15.0%
!! TTAAATACAATTTCATAACT+TGG + chr2_2:14397627-14397646 Msa0239810:intron 15.0%
!! TAAATACAATTTCATAACTT+GGG + chr2_2:14397628-14397647 Msa0239810:intron 15.0%
!! CTTCATTATTAATATCATTA+AGG + chr2_2:14398409-14398428 Msa0239810:intron 15.0%
!! AAAGAAAGAAAGAAAGAAAA+GGG - chr2_2:14395217-14395236 None:intergenic 20.0%
!! GAAACAAAAGTAACAATAAA+GGG - chr2_2:14395897-14395916 None:intergenic 20.0%
!! TGAAACAAAAGTAACAATAA+AGG - chr2_2:14395898-14395917 None:intergenic 20.0%
!!! TTTTTTGAAAAAAATTGTGC+AGG + chr2_2:14396061-14396080 Msa0239810:intron 20.0%
!! ATAATGAGAACCTAATTATT+TGG + chr2_2:14396654-14396673 Msa0239810:intron 20.0%
!! TAATGAGAACCTAATTATTT+GGG + chr2_2:14396655-14396674 Msa0239810:intron 20.0%
!!! GAAAGATTTTATCTAATAGA+TGG + chr2_2:14396791-14396810 Msa0239810:intron 20.0%
!! ATCTCTGTTTATATATTAAG+TGG - chr2_2:14396984-14397003 None:intergenic 20.0%
!!! ATATGATTTGCAAATCATTT+TGG + chr2_2:14397578-14397597 Msa0239810:intron 20.0%
!!! ATAGCTTTTAGATTTTTTCT+AGG + chr2_2:14397655-14397674 Msa0239810:intron 20.0%
!!! TAGCTTTTAGATTTTTTCTA+GGG + chr2_2:14397656-14397675 Msa0239810:intron 20.0%
!! TCCAACAAAAATCAATTTAT+TGG + chr2_2:14397696-14397715 Msa0239810:intron 20.0%
!!! TCCAATAAATTGATTTTTGT+TGG - chr2_2:14397700-14397719 None:intergenic 20.0%
!! CATATAAAAACTCAAAATGA+CGG - chr2_2:14397735-14397754 None:intergenic 20.0%
!!! TGTGTTGTTTAATGTAAATA+AGG + chr2_2:14397858-14397877 Msa0239810:intron 20.0%
!! TTAATATCATTAAGGATTTG+TGG + chr2_2:14398417-14398436 Msa0239810:intron 20.0%
!! TAATATCATTAAGGATTTGT+GGG + chr2_2:14398418-14398437 Msa0239810:intron 20.0%
!! TTCTGTTGAAATATAATTCT+TGG + chr2_2:14398894-14398913 Msa0239810:three_prime_UTR 20.0%
! GAAAGAAAGAAAGAAAGAAA+AGG - chr2_2:14395218-14395237 None:intergenic 25.0%
! AAGATATTAGAAAGGGTTAA+TGG - chr2_2:14395351-14395370 None:intergenic 25.0%
! GAAAAATGAATAAATCCGAT+CGG - chr2_2:14395440-14395459 None:intergenic 25.0%
! TAACTAACTCCAACAATTAT+TGG + chr2_2:14395653-14395672 Msa0239810:intron 25.0%
! ATAGGTTAACCAATAATTGT+TGG - chr2_2:14395665-14395684 None:intergenic 25.0%
! TAGTAACTATATTGAGTAGT+AGG + chr2_2:14396492-14396511 Msa0239810:intron 25.0%
!!! GAGTATTCTTTGAAACAAAA+TGG - chr2_2:14396583-14396602 None:intergenic 25.0%
! CTCATTATCAACAATGTAAA+TGG - chr2_2:14396642-14396661 None:intergenic 25.0%
! AATGAGAACCTAATTATTTG+GGG + chr2_2:14396656-14396675 Msa0239810:intron 25.0%
! AAAACTATCCATTTGAAAAC+TGG - chr2_2:14396854-14396873 None:intergenic 25.0%
! GACATAAATTTCAATATGAG+AGG - chr2_2:14396901-14396920 None:intergenic 25.0%
! CACAAAATTTCAGAATAACA+AGG - chr2_2:14396925-14396944 None:intergenic 25.0%
! TAATCATTCTATGCTGAAAA+GGG - chr2_2:14397067-14397086 None:intergenic 25.0%
! ATAATCATTCTATGCTGAAA+AGG - chr2_2:14397068-14397087 None:intergenic 25.0%
! TTTATAAATTGTGAAGCTGA+AGG + chr2_2:14397131-14397150 Msa0239810:intron 25.0%
! GAACTTATTCACTATATTTC+AGG + chr2_2:14397158-14397177 Msa0239810:intron 25.0%
! ATTAAAGAAGCAATACATTG+TGG + chr2_2:14397333-14397352 Msa0239810:intron 25.0%
! TTAAAGAAGCAATACATTGT+GGG + chr2_2:14397334-14397353 Msa0239810:intron 25.0%
! TAAATAATCTCACCAAAGTT+TGG + chr2_2:14397435-14397454 Msa0239810:intron 25.0%
! ATTTCATATAATCCTTGAGA+TGG - chr2_2:14397530-14397549 None:intergenic 25.0%
! GCAAATCATATTTCAAAGAT+TGG - chr2_2:14397569-14397588 None:intergenic 25.0%
!!! TTTTGAGTTTTTATATGCCT+TGG + chr2_2:14397738-14397757 Msa0239810:intron 25.0%
!!! TTTGAGTTTTTATATGCCTT+GGG + chr2_2:14397739-14397758 Msa0239810:intron 25.0%
!!! TATTGGACAATTTTGATACA+TGG + chr2_2:14397807-14397826 Msa0239810:intron 25.0%
! AATATGACAATTATGCTGAT+TGG + chr2_2:14397980-14397999 Msa0239810:CDS 25.0%
!! AGTCAGATTTTATACATAAC+AGG + chr2_2:14398188-14398207 Msa0239810:intron 25.0%
! TTTATACATAACAGGTTCTT+AGG + chr2_2:14398196-14398215 Msa0239810:intron 25.0%
! AACCATATACAAAAAGATTC+AGG + chr2_2:14398301-14398320 Msa0239810:CDS 25.0%
!! ATCCTGAATCTTTTTGTATA+TGG - chr2_2:14398306-14398325 None:intergenic 25.0%
! ATATACAAAAAGATTCAGGA+TGG + chr2_2:14398305-14398324 Msa0239810:CDS 25.0%
!! AGTTTTTGATGTATCAAATG+AGG + chr2_2:14398328-14398347 Msa0239810:CDS 25.0%
! ATGAAGTGATAAAACAAACA+AGG - chr2_2:14398395-14398414 None:intergenic 25.0%
!! AGTCTTATGGAATAAAAGTA+GGG + chr2_2:14398580-14398599 Msa0239810:intron 25.0%
GGAGAAAGAAAAATTAGAGA+TGG - chr2_2:14395168-14395187 None:intergenic 30.0%
CTCTTCAAATACATCATCAT+CGG + chr2_2:14395307-14395326 Msa0239810:CDS 30.0%
! ACAGTGAAGTAATGTTCTTT+TGG - chr2_2:14395719-14395738 None:intergenic 30.0%
! AGAGAGAAGGTGATATTTTA+TGG + chr2_2:14395811-14395830 Msa0239810:intron 30.0%
! TATGGACTAAATTAGAGAGA+AGG + chr2_2:14395829-14395848 Msa0239810:intron 30.0%
! ATTCAATTTTGTTACTGCCA+TGG + chr2_2:14395870-14395889 Msa0239810:intron 30.0%
!! TGAAGTTTAAGTTTTGGTAG+TGG + chr2_2:14396003-14396022 Msa0239810:intron 30.0%
AGTATGAACATTGAACAAGT+TGG - chr2_2:14396269-14396288 None:intergenic 30.0%
CAACCAAATAGAAATCTTCA+GGG - chr2_2:14396400-14396419 None:intergenic 30.0%
TCAACCAAATAGAAATCTTC+AGG - chr2_2:14396401-14396420 None:intergenic 30.0%
TATATTGAGTAGTAGGCTTA+GGG + chr2_2:14396499-14396518 Msa0239810:intron 30.0%
!! TTCTTTGAAACAAAATGGCA+TGG - chr2_2:14396578-14396597 None:intergenic 30.0%
CAAATCATCCCCAAATAATT+AGG - chr2_2:14396667-14396686 None:intergenic 30.0%
AATGATTATCCAGATTTCAG+TGG + chr2_2:14397079-14397098 Msa0239810:intron 30.0%
TGGAAACATTGTTCATTTGT+TGG + chr2_2:14397102-14397121 Msa0239810:intron 30.0%
CTTATTCACTATATTTCAGG+CGG + chr2_2:14397161-14397180 Msa0239810:intron 30.0%
TTATTCACTATATTTCAGGC+GGG + chr2_2:14397162-14397181 Msa0239810:intron 30.0%
TGCTTGTTTATGATATAACC+AGG + chr2_2:14397241-14397260 Msa0239810:CDS 30.0%
ATAATAGAAGTCAAAGCTTG+AGG - chr2_2:14397270-14397289 None:intergenic 30.0%
TAAAGAAGCAATACATTGTG+GGG + chr2_2:14397335-14397354 Msa0239810:intron 30.0%
AGTATGTTGTTCCATGAAAT+TGG - chr2_2:14397786-14397805 None:intergenic 30.0%
CATGGAACAACATACTATAT+TGG + chr2_2:14397790-14397809 Msa0239810:intron 30.0%
TAAAATCTGACTTTCCTTGT+GGG - chr2_2:14398180-14398199 None:intergenic 30.0%
ATAAAATCTGACTTTCCTTG+TGG - chr2_2:14398181-14398200 None:intergenic 30.0%
!!! GGTTCTTAGGTTGAATATTT+TGG + chr2_2:14398209-14398228 Msa0239810:intron 30.0%
! AATATAACCTATCCTTTTGC+AGG + chr2_2:14398259-14398278 Msa0239810:intron 30.0%
! TTTTTATGAATGCCTGCAAA+AGG - chr2_2:14398274-14398293 None:intergenic 30.0%
TCTGTGTATGTTTCAAGAAA+AGG + chr2_2:14398480-14398499 Msa0239810:intron 30.0%
! ACTTGTTTCTTGAATCAGAA+GGG - chr2_2:14398536-14398555 None:intergenic 30.0%
! CAGTCTTATGGAATAAAAGT+AGG + chr2_2:14398579-14398598 Msa0239810:intron 30.0%
TATGGAATAAAAGTAGGGTA+TGG + chr2_2:14398585-14398604 Msa0239810:CDS 30.0%
AGAACTACATTGAAGCAAAT+AGG - chr2_2:14398695-14398714 None:intergenic 30.0%
AAGCAAGGAACTTAGATAGA+GGG + chr2_2:14395051-14395070 Msa0239810:five_prime_UTR 35.0%
! CGATGATGATGTATTTGAAG+AGG - chr2_2:14395309-14395328 None:intergenic 35.0%
TGGAGTTAGTTATCAGAACT+CGG - chr2_2:14395645-14395664 None:intergenic 35.0%
! TTCTTTTGGTAAAAACCCTC+CGG - chr2_2:14395705-14395724 None:intergenic 35.0%
TACTTCACTGTGTTAATAGC+AGG + chr2_2:14395728-14395747 Msa0239810:intron 35.0%
ACTTCACTGTGTTAATAGCA+GGG + chr2_2:14395729-14395748 Msa0239810:intron 35.0%
!!! AGAGAAGGTGATAGTTTTGA+TGG + chr2_2:14395844-14395863 Msa0239810:intron 35.0%
AAGTAACAATAAAGGGTCCA+TGG - chr2_2:14395890-14395909 None:intergenic 35.0%
TAAGAATCAAAACCGCTAAG+TGG + chr2_2:14395923-14395942 Msa0239810:intron 35.0%
AAGAATCAAAACCGCTAAGT+GGG + chr2_2:14395924-14395943 Msa0239810:intron 35.0%
TTCAACTATTACCCACTTAG+CGG - chr2_2:14395938-14395957 None:intergenic 35.0%
GAAAAAAATTGTGCAGGAGT+TGG + chr2_2:14396067-14396086 Msa0239810:intron 35.0%
! AGCCAATCAAGTTGCAAATA+TGG + chr2_2:14396194-14396213 Msa0239810:CDS 35.0%
! GCCAATCAAGTTGCAAATAT+GGG + chr2_2:14396195-14396214 Msa0239810:CDS 35.0%
TCCCATATTTGCAACTTGAT+TGG - chr2_2:14396199-14396218 None:intergenic 35.0%
CAAGTTGCAAATATGGGATA+CGG + chr2_2:14396201-14396220 Msa0239810:CDS 35.0%
! TGAACATTGAACAAGTTGGA+AGG - chr2_2:14396265-14396284 None:intergenic 35.0%
!! TATTGCTGTTTCTCGTTTCT+AGG + chr2_2:14396323-14396342 Msa0239810:intron 35.0%
! TGTTTCTCGTTTCTAGGAAT+TGG + chr2_2:14396329-14396348 Msa0239810:intron 35.0%
! CGTTTCTAGGAATTGGTAAT+TGG + chr2_2:14396336-14396355 Msa0239810:intron 35.0%
TGTGATGATCATTTCAATCC+AGG + chr2_2:14396360-14396379 Msa0239810:intron 35.0%
GTGATGATCATTTCAATCCA+GGG + chr2_2:14396361-14396380 Msa0239810:intron 35.0%
TCACCCTGAAGATTTCTATT+TGG + chr2_2:14396394-14396413 Msa0239810:intron 35.0%
CTATATTGAGTAGTAGGCTT+AGG + chr2_2:14396498-14396517 Msa0239810:intron 35.0%
CAGACTACAGATATGACAAA+CGG - chr2_2:14396537-14396556 None:intergenic 35.0%
AGTGTGATCTATAGTTTCCT+TGG + chr2_2:14396608-14396627 Msa0239810:intron 35.0%
GTGTGATCTATAGTTTCCTT+GGG + chr2_2:14396609-14396628 Msa0239810:intron 35.0%
TGTGATCTATAGTTTCCTTG+GGG + chr2_2:14396610-14396629 Msa0239810:intron 35.0%
!! TGGCTTTGTAGATGTAAGAT+AGG + chr2_2:14396727-14396746 Msa0239810:intron 35.0%
TCTAAACTCATCTTCTCAAG+TGG + chr2_2:14396752-14396771 Msa0239810:intron 35.0%
! TAATAGATGGGAGTGTAGTT+TGG + chr2_2:14396804-14396823 Msa0239810:intron 35.0%
!! AAAACTGGAAGGTACCTTAA+GGG - chr2_2:14396839-14396858 None:intergenic 35.0%
CTATCCATTTGAAAACTGGA+AGG - chr2_2:14396850-14396869 None:intergenic 35.0%
AACAAAATTTGACCCAGATG+AGG + chr2_2:14397009-14397028 Msa0239810:intron 35.0%
AATTTCACAGAACCTCATCT+GGG - chr2_2:14397024-14397043 None:intergenic 35.0%
AAATTTCACAGAACCTCATC+TGG - chr2_2:14397025-14397044 None:intergenic 35.0%
AATCCTTCAGATCTATCACA+AGG + chr2_2:14397190-14397209 Msa0239810:CDS 35.0%
ATCACAAGGTCATATTACAG+AGG + chr2_2:14397204-14397223 Msa0239810:CDS 35.0%
AAAGAAGCAATACATTGTGG+GGG + chr2_2:14397336-14397355 Msa0239810:intron 35.0%
! CTCTCTTTTCTTCCAAACTT+TGG - chr2_2:14397450-14397469 None:intergenic 35.0%
ACTATCGTATGATCTTCCTT+AGG + chr2_2:14397472-14397491 Msa0239810:intron 35.0%
CTATCGTATGATCTTCCTTA+GGG + chr2_2:14397473-14397492 Msa0239810:intron 35.0%
TTTGAGTGCATCCAATTTCA+TGG + chr2_2:14397772-14397791 Msa0239810:intron 35.0%
CATTTAATCACTTAGCTAGC+TGG + chr2_2:14397927-14397946 Msa0239810:CDS 35.0%
! GACTTGTTTCTTGAATCAGA+AGG - chr2_2:14398537-14398556 None:intergenic 35.0%
TTCATATGCTTGCAGTCTTA+TGG + chr2_2:14398567-14398586 Msa0239810:intron 35.0%
TTCTTTCTGTCTTCTCTTCT+GGG + chr2_2:14398711-14398730 Msa0239810:three_prime_UTR 35.0%
GAAGCAAGGAACTTAGATAG+AGG + chr2_2:14395050-14395069 Msa0239810:five_prime_UTR 40.0%
TCGCTGGAAACTCTATCATT+CGG + chr2_2:14395119-14395138 Msa0239810:five_prime_UTR 40.0%
AAAAGCGAAGAGGGGAAAAA+GGG - chr2_2:14395189-14395208 None:intergenic 40.0%
AAAAAGCGAAGAGGGGAAAA+AGG - chr2_2:14395190-14395209 None:intergenic 40.0%
AGGGAAAGAAAAAGCGAAGA+GGG - chr2_2:14395198-14395217 None:intergenic 40.0%
AAGGGAAAGAAAAAGCGAAG+AGG - chr2_2:14395199-14395218 None:intergenic 40.0%
GGAGTTAGTTATCAGAACTC+GGG - chr2_2:14395644-14395663 None:intergenic 40.0%
! TAACCTATGCCCTTTTACCA+AGG + chr2_2:14395677-14395696 Msa0239810:intron 40.0%
TAGGGACTAAGTTAGAGAGA+AGG + chr2_2:14395798-14395817 Msa0239810:intron 40.0%
TCAAAAAACCCAAGTCCTCT+CGG - chr2_2:14396038-14396057 None:intergenic 40.0%
!! TTGACCATCGGTGTTGAATT+TGG + chr2_2:14396145-14396164 Msa0239810:CDS 40.0%
!! CTTGATTGGCTTGTTATCGA+TGG - chr2_2:14396185-14396204 None:intergenic 40.0%
AGGGTGAAATTAAAAGACCC+TGG - chr2_2:14396381-14396400 None:intergenic 40.0%
ACTACAGATATGACAAACGG+CGG - chr2_2:14396534-14396553 None:intergenic 40.0%
GTGATCTATAGTTTCCTTGG+GGG + chr2_2:14396611-14396630 Msa0239810:intron 40.0%
TCATCTTCTCAAGTGGTCAT+GGG + chr2_2:14396759-14396778 Msa0239810:intron 40.0%
! ATGGGAGTGTAGTTTGGTAA+TGG + chr2_2:14396810-14396829 Msa0239810:intron 40.0%
!! TTTGGTAATGGTGACCCTTA+AGG + chr2_2:14396822-14396841 Msa0239810:intron 40.0%
!! GAAAACTGGAAGGTACCTTA+AGG - chr2_2:14396840-14396859 None:intergenic 40.0%
! GGTACCTTCCAGTTTTCAAA+TGG + chr2_2:14396843-14396862 Msa0239810:intron 40.0%
ATTCTATGCTGAAAAGGGAC+TGG - chr2_2:14397062-14397081 None:intergenic 40.0%
GATTATCCAGATTTCAGTGG+TGG + chr2_2:14397082-14397101 Msa0239810:intron 40.0%
ATGTTTCCACCACTGAAATC+TGG - chr2_2:14397091-14397110 None:intergenic 40.0%
TGACCTTGTGATAGATCTGA+AGG - chr2_2:14397196-14397215 None:intergenic 40.0%
GTATGATCTTCCTTAGGGTT+AGG + chr2_2:14397478-14397497 Msa0239810:intron 40.0%
CTATTCATAAACACAGGGTC+AGG - chr2_2:14397899-14397918 None:intergenic 40.0%
CTGACCCTGTGTTTATGAAT+AGG + chr2_2:14397897-14397916 Msa0239810:intron 40.0%
ACCCTGTGTTTATGAATAGG+AGG + chr2_2:14397900-14397919 Msa0239810:intron 40.0%
CCCTCCTATTCATAAACACA+GGG - chr2_2:14397904-14397923 None:intergenic 40.0%
CCCTGTGTTTATGAATAGGA+GGG + chr2_2:14397901-14397920 Msa0239810:intron 40.0%
TCCCTCCTATTCATAAACAC+AGG - chr2_2:14397905-14397924 None:intergenic 40.0%
TAATCACTTAGCTAGCTGGT+TGG + chr2_2:14397931-14397950 Msa0239810:CDS 40.0%
AGAAGGTGAACAGTTTGCAA+AGG + chr2_2:14398045-14398064 Msa0239810:CDS 40.0%
GAACAGTTTGCAAAGGAGAA+CGG + chr2_2:14398052-14398071 Msa0239810:CDS 40.0%
AACAGTTTGCAAAGGAGAAC+GGG + chr2_2:14398053-14398072 Msa0239810:CDS 40.0%
! ATTCTGAGCAGTTTTTGCTG+AGG - chr2_2:14398095-14398114 None:intergenic 40.0%
AACTGCTCAGAATGTTGAAG+AGG + chr2_2:14398102-14398121 Msa0239810:CDS 40.0%
ATGAATGCCTGCAAAAGGAT+AGG - chr2_2:14398269-14398288 None:intergenic 40.0%
CAGGCATTCATAAAAACAGC+TGG + chr2_2:14398278-14398297 Msa0239810:intron 40.0%
GGAATAAAAGTAGGGTATGG+TGG + chr2_2:14398588-14398607 Msa0239810:CDS 40.0%
GTTCTTTCTGTCTTCTCTTC+TGG + chr2_2:14398710-14398729 Msa0239810:three_prime_UTR 40.0%
! TAGAGCAGGATCGTTTTCGT+AGG + chr2_2:14395006-14395025 Msa0239810:five_prime_UTR 45.0%
! AGAGCAGGATCGTTTTCGTA+GGG + chr2_2:14395007-14395026 Msa0239810:five_prime_UTR 45.0%
! GATCGTTTTCGTAGGGAAGA+AGG + chr2_2:14395014-14395033 Msa0239810:five_prime_UTR 45.0%
AGGGAAGAAGGAAGTTGTCA+CGG + chr2_2:14395026-14395045 Msa0239810:five_prime_UTR 45.0%
TGTGTGTATTATTGCCTCGC+TGG + chr2_2:14395103-14395122 Msa0239810:five_prime_UTR 45.0%
GAATGATAGAGTTTCCAGCG+AGG - chr2_2:14395120-14395139 None:intergenic 45.0%
GGGAAAGAAAAAGCGAAGAG+GGG - chr2_2:14395197-14395216 None:intergenic 45.0%
TACATCATCATCGGCGATAC+TGG + chr2_2:14395316-14395335 Msa0239810:CDS 45.0%
GAAATCGAAGCTGGAACTGT+TGG - chr2_2:14395418-14395437 None:intergenic 45.0%
TTCCAGCTTCGATTTCCGAT+CGG + chr2_2:14395422-14395441 Msa0239810:intron 45.0%
! GTTCCTTGGTAAAAGGGCAT+AGG - chr2_2:14395683-14395702 None:intergenic 45.0%
! ATGCCCTTTTACCAAGGAAC+CGG + chr2_2:14395683-14395702 Msa0239810:intron 45.0%
AATTCATGCCGAGAGGACTT+GGG + chr2_2:14396027-14396046 Msa0239810:intron 45.0%
CCTGTTCATGACTTGACCAT+CGG + chr2_2:14396133-14396152 Msa0239810:CDS 45.0%
AGCACCAAATTCAACACCGA+TGG - chr2_2:14396152-14396171 None:intergenic 45.0%
!! TCGGTGTTGAATTTGGTGCT+AGG + chr2_2:14396152-14396171 Msa0239810:CDS 45.0%
!! TGTAAATGGATTAGCCCCCA+AGG - chr2_2:14396628-14396647 None:intergenic 45.0%
CTCATCTTCTCAAGTGGTCA+TGG + chr2_2:14396758-14396777 Msa0239810:intron 45.0%
CATCTTCTCAAGTGGTCATG+GGG + chr2_2:14396760-14396779 Msa0239810:intron 45.0%
AAGTGGTCATGGGGTATGAA+TGG + chr2_2:14396769-14396788 Msa0239810:intron 45.0%
TCATATTACAGAGGAGCTGC+AGG + chr2_2:14397213-14397232 Msa0239810:CDS 45.0%
AGTCAAAGCTTGAGGATACC+TGG - chr2_2:14397262-14397281 None:intergenic 45.0%
TGGGGGATGATGAAAATCAC+TGG + chr2_2:14397353-14397372 Msa0239810:intron 45.0%
GGGGGATGATGAAAATCACT+GGG + chr2_2:14397354-14397373 Msa0239810:intron 45.0%
TCACTGGGACAAGTCATGAA+TGG + chr2_2:14397369-14397388 Msa0239810:intron 45.0%
AGGTGTAGTTCCTAACCCTA+AGG - chr2_2:14397491-14397510 None:intergenic 45.0%
CTCAAAACATGCAACTCCCA+AGG - chr2_2:14397758-14397777 None:intergenic 45.0%
AGTGTGATCTTGCTCACAGA+CGG + chr2_2:14398008-14398027 Msa0239810:CDS 45.0%
!!! GGAGAACGGGTTGATTTTCA+TGG + chr2_2:14398066-14398085 Msa0239810:CDS 45.0%
!!! GAACGGGTTGATTTTCATGG+AGG + chr2_2:14398069-14398088 Msa0239810:CDS 45.0%
ATCTGACTTTCCTTGTGGGA+GGG - chr2_2:14398176-14398195 None:intergenic 45.0%
AATCTGACTTTCCTTGTGGG+AGG - chr2_2:14398177-14398196 None:intergenic 45.0%
TCTGTCTTCTCTTCTGGGTT+TGG + chr2_2:14398716-14398735 Msa0239810:three_prime_UTR 45.0%
! TGGCATTAGACTAGCCGTAA+AGG + chr2_2:14398914-14398933 Msa0239810:three_prime_UTR 45.0%
GAAGTTGTCACGGAGAAGCA+AGG + chr2_2:14395036-14395055 Msa0239810:five_prime_UTR 50.0%
TTGTGTGCGAGAGAGAACGA+TGG - chr2_2:14395250-14395269 None:intergenic 50.0%
ATCCGATCGGAAATCGAAGC+TGG - chr2_2:14395427-14395446 None:intergenic 50.0%
CCTCCGGTTCCTTGGTAAAA+GGG - chr2_2:14395689-14395708 None:intergenic 50.0%
! CCTTTTACCAAGGAACCGGA+GGG + chr2_2:14395687-14395706 Msa0239810:intron 50.0%
GTAAAAACCCTCCGGTTCCT+TGG - chr2_2:14395697-14395716 None:intergenic 50.0%
TAGTGGCAATTCATGCCGAG+AGG + chr2_2:14396020-14396039 Msa0239810:intron 50.0%
CAATTCATGCCGAGAGGACT+TGG + chr2_2:14396026-14396045 Msa0239810:intron 50.0%
CCGATGGTCAAGTCATGAAC+AGG - chr2_2:14396136-14396155 None:intergenic 50.0%
CTAGCTGGTTGGAAGATGCA+AGG + chr2_2:14397942-14397961 Msa0239810:CDS 50.0%
GTGTGATCTTGCTCACAGAC+GGG + chr2_2:14398009-14398028 Msa0239810:CDS 50.0%
! GTAGGGTATGGTGGAATTCC+TGG + chr2_2:14398597-14398616 Msa0239810:CDS 50.0%
! CCCTTTTACCAAGGAACCGG+AGG + chr2_2:14395686-14395705 Msa0239810:intron 55.0%
CCCTCCGGTTCCTTGGTAAA+AGG - chr2_2:14395690-14395709 None:intergenic 55.0%
!! TGAGATGGACTGCGAAGTGG+TGG - chr2_2:14397515-14397534 None:intergenic 55.0%
!! CCTTGAGATGGACTGCGAAG+TGG - chr2_2:14397518-14397537 None:intergenic 55.0%
CCACTTCGCAGTCCATCTCA+AGG + chr2_2:14397515-14397534 Msa0239810:intron 55.0%
!! TCACAGACGGGCTGTAAGCA+CGG + chr2_2:14398021-14398040 Msa0239810:CDS 55.0%
TTCCTTGTGGGAGGGTGGAT+GGG - chr2_2:14398168-14398187 None:intergenic 55.0%
TTTCCTTGTGGGAGGGTGGA+TGG - chr2_2:14398169-14398188 None:intergenic 55.0%
TGACTTTCCTTGTGGGAGGG+TGG - chr2_2:14398173-14398192 None:intergenic 55.0%
GGTGGAATTCCTGGACCATC+TGG + chr2_2:14398606-14398625 Msa0239810:CDS 55.0%
GGAATTCCTGGACCATCTGG+AGG + chr2_2:14398609-14398628 Msa0239810:CDS 55.0%
TTCCTGGACCATCTGGAGGT+AGG + chr2_2:14398613-14398632 Msa0239810:CDS 55.0%
TCCTGGACCATCTGGAGGTA+GGG + chr2_2:14398614-14398633 Msa0239810:CDS 55.0%
! ATGGACTGCGAAGTGGTGGC+AGG - chr2_2:14397511-14397530 None:intergenic 60.0%
CGGGCTGTAAGCACGGAAGA+AGG + chr2_2:14398028-14398047 Msa0239810:CDS 60.0%
TTCCCATCCACCCTCCCACA+AGG + chr2_2:14398163-14398182 Msa0239810:intron 60.0%
TCCCTACCTCCAGATGGTCC+AGG - chr2_2:14398618-14398637 None:intergenic 60.0%
GGACCATCTGGAGGTAGGGA+TGG + chr2_2:14398618-14398637 Msa0239810:CDS 60.0%
TAGGGATGGCCCTTCTGCTG+CGG + chr2_2:14398632-14398651 Msa0239810:CDS 60.0%
GGGCCATCCCTACCTCCAGA+TGG - chr2_2:14398624-14398643 None:intergenic 65.0%
AGGGATGGCCCTTCTGCTGC+GGG + chr2_2:14398633-14398652 Msa0239810:CDS 65.0%
AGCCTCCACCCGCAGCAGAA+GGG - chr2_2:14398644-14398663 None:intergenic 65.0%
GATGGCCCTTCTGCTGCGGG+TGG + chr2_2:14398636-14398655 Msa0239810:CDS 70.0%
CAGCCTCCACCCGCAGCAGA+AGG - chr2_2:14398645-14398664 None:intergenic 70.0%
GGCCCTTCTGCTGCGGGTGG+AGG + chr2_2:14398639-14398658 Msa0239810:CDS 75.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 14395001 14398938 14395001 ID=Msa0239810;Name=Msa0239810
chr2_2 mRNA 14395001 14398938 14395001 ID=Msa0239810-mRNA-1;Parent=Msa0239810;Name=Msa0239810-mRNA-1;_AED=0.09;_eAED=0.09;_QI=259|1|1|1|0.83|0.71|7|264|211
chr2_2 exon 14395001 14395237 14395001 ID=Msa0239810-mRNA-1:exon:5991;Parent=Msa0239810-mRNA-1
chr2_2 exon 14395270 14395337 14395270 ID=Msa0239810-mRNA-1:exon:5992;Parent=Msa0239810-mRNA-1
chr2_2 exon 14396083 14396222 14396083 ID=Msa0239810-mRNA-1:exon:5993;Parent=Msa0239810-mRNA-1
chr2_2 exon 14397180 14397262 14397180 ID=Msa0239810-mRNA-1:exon:5994;Parent=Msa0239810-mRNA-1
chr2_2 exon 14397919 14398123 14397919 ID=Msa0239810-mRNA-1:exon:5995;Parent=Msa0239810-mRNA-1
chr2_2 exon 14398281 14398349 14398281 ID=Msa0239810-mRNA-1:exon:5996;Parent=Msa0239810-mRNA-1
chr2_2 exon 14398582 14398938 14398582 ID=Msa0239810-mRNA-1:exon:5997;Parent=Msa0239810-mRNA-1
chr2_2 five_prime_UTR 14395001 14395237 14395001 ID=Msa0239810-mRNA-1:five_prime_utr;Parent=Msa0239810-mRNA-1
chr2_2 five_prime_UTR 14395270 14395291 14395270 ID=Msa0239810-mRNA-1:five_prime_utr;Parent=Msa0239810-mRNA-1
chr2_2 CDS 14395292 14395337 14395292 ID=Msa0239810-mRNA-1:cds;Parent=Msa0239810-mRNA-1
chr2_2 CDS 14396083 14396222 14396083 ID=Msa0239810-mRNA-1:cds;Parent=Msa0239810-mRNA-1
chr2_2 CDS 14397180 14397262 14397180 ID=Msa0239810-mRNA-1:cds;Parent=Msa0239810-mRNA-1
chr2_2 CDS 14397919 14398123 14397919 ID=Msa0239810-mRNA-1:cds;Parent=Msa0239810-mRNA-1
chr2_2 CDS 14398281 14398349 14398281 ID=Msa0239810-mRNA-1:cds;Parent=Msa0239810-mRNA-1
chr2_2 CDS 14398582 14398674 14398582 ID=Msa0239810-mRNA-1:cds;Parent=Msa0239810-mRNA-1
chr2_2 three_prime_UTR 14398675 14398938 14398675 ID=Msa0239810-mRNA-1:three_prime_utr;Parent=Msa0239810-mRNA-1
Gene Sequence

>Msa0239810

ATGTCTTACGCATACCTCTTCAAATACATCATCATCGGCGATACTGGAGTTGGAAAGTCATGTCTTCTACTTCAGTTCACTGATAAGCGCTTTCAACCTGTTCATGACTTGACCATCGGTGTTGAATTTGGTGCTAGGATGATCACCATCGATAACAAGCCAATCAAGTTGCAAATATGGGATACGGCGGGTCAAGAATCCTTCAGATCTATCACAAGGTCATATTACAGAGGAGCTGCAGGTGCACTGCTTGTTTATGATATAACCAGGAGGGAGACATTTAATCACTTAGCTAGCTGGTTGGAAGATGCAAGGCAGCATGCAAATGCAAATATGACAATTATGCTGATTGGCAACAAGTGTGATCTTGCTCACAGACGGGCTGTAAGCACGGAAGAAGGTGAACAGTTTGCAAAGGAGAACGGGTTGATTTTCATGGAGGCCTCAGCAAAAACTGCTCAGAATGTTGAAGAGGCATTCATAAAAACAGCTGGAACCATATACAAAAAGATTCAGGATGGAGTTTTTGATGTATCAAATGAGTCTTATGGAATAAAAGTAGGGTATGGTGGAATTCCTGGACCATCTGGAGGTAGGGATGGCCCTTCTGCTGCGGGTGGAGGCTGCTGCAGTTGA
Protein sequence

>Msa0239810

MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKENGLIFMEASAKTAQNVEEAFIKTAGTIYKKIQDGVFDVSNESYGIKVGYGGIPGPSGGRDGPSAAGGGCCS*