AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0838560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0838560 MtrunA17_Chr5g0406211 96.916 227 7 0 1 227 100 326 1.72e-166 462
Msa0838560 MtrunA17_Chr3g0141831 36.559 186 111 4 41 221 130 313 9.25e-33 120
Msa0838560 MtrunA17_Chr1g0155531 34.946 186 114 4 41 221 133 316 4.87e-29 110
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0838560 AT5G66050.2 52.632 228 103 3 1 224 5 231 1.65e-81 244
Msa0838560 AT5G66050.1 52.632 228 103 3 1 224 99 325 2.67e-80 244
Msa0838560 AT5G66050.3 52.423 227 103 3 1 223 99 324 8.96e-80 242
Msa0838560 AT5G66050.4 51.675 209 96 3 1 205 99 306 1.82e-70 218
Msa0838560 AT1G19660.2 38.462 182 105 4 41 217 137 316 7.11e-34 124
Msa0838560 AT1G19660.1 38.462 182 105 4 41 217 137 316 7.11e-34 124
Msa0838560 AT1G75380.3 37.097 186 110 4 41 221 133 316 9.51e-33 121
Msa0838560 AT1G75380.1 37.097 186 110 4 41 221 133 316 9.51e-33 121
Msa0838560 AT1G75380.4 37.097 186 110 4 41 221 133 316 9.51e-33 121
Msa0838560 AT1G75380.2 37.097 186 110 4 41 221 133 316 9.51e-33 121
Msa0838560 AT1G19660.3 36.364 176 105 4 41 211 137 310 1.16e-28 110

Find 81 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAAGTAATTCAAAATTTC+AGG 0.158051 5_4:-12957074 None:intergenic
GCATTTATTTGCAACATTAA+TGG 0.190657 5_4:-12958448 None:intergenic
TGAGGAAGGATTTGGGTTTA+TGG 0.190859 5_4:-12956359 None:intergenic
ATTTCTTTACTTACATATAT+TGG 0.231030 5_4:-12958738 None:intergenic
ACATGAAATGAGGAAGGATT+TGG 0.264528 5_4:-12956367 None:intergenic
TTTACTCTTTCAGGTGATAA+TGG 0.294692 5_4:+12958237 Msa0838560:intron
GTTATGATGATCGCTGAAAT+TGG 0.303922 5_4:-12956409 None:intergenic
AGTTCTTGAGCTACCGAATC+TGG 0.317594 5_4:-12958987 None:intergenic
TCATCTCAGGAGCACTAATT+AGG 0.325608 5_4:+12959248 Msa0838560:exon
TTATCAAATCAAATGTATTA+AGG 0.330207 5_4:+12959554 Msa0838560:three_prime_UTR
CAACTAGGTTATTCACAAAC+TGG 0.340562 5_4:-12957549 None:intergenic
AATGAAGAAGATGAAGATAA+AGG 0.356660 5_4:-12956148 None:intergenic
TACCGAATCTGGACCATCTA+TGG 0.358074 5_4:-12958976 None:intergenic
TATGTTCTGCCCATTGTTGT+AGG 0.358421 5_4:+12957285 Msa0838560:CDS
GGAGCACTAATTAGGTTGTT+AGG 0.368218 5_4:+12959256 Msa0838560:exon
CATGAAATGAGGAAGGATTT+GGG 0.368700 5_4:-12956366 None:intergenic
TGGAGAAGAGGGAGGTGAAT+GGG 0.376687 5_4:-12956318 None:intergenic
GGGCAGAGTGCATAATAAAA+AGG 0.382577 5_4:+12958797 Msa0838560:CDS
ATGGAGAAGAGGGAGGTGAA+TGG 0.392668 5_4:-12956319 None:intergenic
TTTATGATGTATTGCTTGAC+AGG 0.409824 5_4:+12958823 Msa0838560:CDS
GGTTATTCACAAACTGGAAC+TGG 0.445405 5_4:-12957543 None:intergenic
GTTTGTTACAGTGCCATAGA+TGG 0.457604 5_4:+12958963 Msa0838560:intron
ATGGTGGTGGCGCCAGTGAT+CGG 0.464920 5_4:-12956228 None:intergenic
GGTGGCGGCATTTGTGTGAT+CGG 0.464935 5_4:-12956256 None:intergenic
GAAGCTTCTATTCTTCTCTC+AGG 0.465319 5_4:+12956459 Msa0838560:five_prime_UTR
GGAAGCGAGAGCGACGAGAA+TGG 0.466057 5_4:-12956338 None:intergenic
TGCCATAGATGGTCCAGATT+CGG 0.469346 5_4:+12958974 Msa0838560:CDS
TGCCATATTGCAGGATTGGC+CGG 0.472759 5_4:+12957519 Msa0838560:intron
AGAAACGGAGCGGGAGGTGG+CGG 0.475931 5_4:-12956271 None:intergenic
TTAAGTAATTCAAAATTTCA+GGG 0.480298 5_4:-12957073 None:intergenic
CATGATCTAGTCTTTCAACT+AGG 0.480955 5_4:-12957564 None:intergenic
ATATATACAAGCTAAGGTTA+AGG 0.484532 5_4:-12959528 None:intergenic
GTATTAAGGCCTAAAACCTC+TGG 0.487236 5_4:+12959568 Msa0838560:three_prime_UTR
GAGAGAGTGAGAAACGGAGC+GGG 0.489568 5_4:-12956280 None:intergenic
ATAAGACTCGGCTATGGAAT+GGG 0.490306 5_4:+12958777 Msa0838560:CDS
GTGAGAAACGGAGCGGGAGG+TGG 0.492662 5_4:-12956274 None:intergenic
TATAAGACTCGGCTATGGAA+TGG 0.494787 5_4:+12958776 Msa0838560:CDS
GCATACATACCTACAACAAT+GGG 0.495198 5_4:-12957294 None:intergenic
TGCAACATTAATGGCATCTG+AGG 0.495726 5_4:-12958439 None:intergenic
AGCATACATACCTACAACAA+TGG 0.501223 5_4:-12957295 None:intergenic
AGCGACGAGAATGGAGAAGA+GGG 0.502328 5_4:-12956329 None:intergenic
TTCTCCATCCAACCGATCAC+TGG 0.507381 5_4:+12956216 Msa0838560:five_prime_UTR
TCAGGGATTCATACACATCA+TGG 0.512511 5_4:-12957056 None:intergenic
TTCACAAACTGGAACTGGTC+CGG 0.513315 5_4:-12957538 None:intergenic
TTTCTCAAGATTTCTTGTGA+TGG 0.525235 5_4:+12957258 Msa0838560:CDS
AAATCTTCGTAAATCATCTC+AGG 0.525481 5_4:+12959235 Msa0838560:CDS
GAAAAGTGATATTATTAGTG+TGG 0.530123 5_4:+12958407 Msa0838560:CDS
GCAGAAACAATAGCACACTA+TGG 0.532405 5_4:+12957102 Msa0838560:five_prime_UTR
AAGAAGATGAAGATAAAGGT+TGG 0.538027 5_4:-12956144 None:intergenic
TACCTGGCTGAGGTACAATC+TGG 0.538203 5_4:-12958296 None:intergenic
ATTTGTGTGATCGGTGGTGA+TGG 0.540250 5_4:-12956247 None:intergenic
TGCCAGATTGTACCTCAGCC+AGG 0.542240 5_4:+12958294 Msa0838560:CDS
GGCGCCAGTGATCGGTTGGA+TGG 0.544976 5_4:-12956220 None:intergenic
TGAATTACATGAAATGAGGA+AGG 0.546750 5_4:-12956373 None:intergenic
GACGCTATAAGACTCGGCTA+TGG 0.548905 5_4:+12958771 Msa0838560:CDS
GCAACATTAATGGCATCTGA+GGG 0.557171 5_4:-12958438 None:intergenic
GAGCGACGAGAATGGAGAAG+AGG 0.569903 5_4:-12956330 None:intergenic
GAAGGAGAGAGAGTGAGAAA+CGG 0.571740 5_4:-12956286 None:intergenic
TCCAGAAAATAGCTCGAGAA+GGG 0.576030 5_4:+12957182 Msa0838560:CDS
GAGATGAATTACATGAAATG+AGG 0.577670 5_4:-12956377 None:intergenic
TAATATATATATACAAGCTA+AGG 0.580612 5_4:-12959534 None:intergenic
AGAGTGAGAAACGGAGCGGG+AGG 0.584013 5_4:-12956277 None:intergenic
GTGATCGGTGGTGATGGTGG+TGG 0.588642 5_4:-12956241 None:intergenic
TATGCATTTAGCTATCAAGC+AGG 0.596160 5_4:+12959025 Msa0838560:CDS
ATAGTAGTTTATTCAGACAA+GGG 0.597464 5_4:+12957205 Msa0838560:CDS
TTCACAGACGCTATAAGACT+CGG 0.599122 5_4:+12958765 Msa0838560:CDS
TAATGTTGCAAATAAATGCA+AGG 0.602512 5_4:+12958452 Msa0838560:CDS
TGGTGGCGCCAGTGATCGGT+TGG 0.603712 5_4:-12956224 None:intergenic
TTCCAGAAAATAGCTCGAGA+AGG 0.604172 5_4:+12957181 Msa0838560:CDS
CAATAGCACACTATGGAATG+TGG 0.604628 5_4:+12957109 Msa0838560:exon
GATAGTAGTTTATTCAGACA+AGG 0.606215 5_4:+12957204 Msa0838560:CDS
CAGGAAAGATTTAATGACGC+AGG 0.608205 5_4:+12959044 Msa0838560:CDS
AAGATGAAGATAAAGGTTGG+TGG 0.618582 5_4:-12956141 None:intergenic
GTGAATGGGAGAGAAATCGA+AGG 0.630745 5_4:-12956304 None:intergenic
AAGTTGCCAATACCTGGCTG+AGG 0.635842 5_4:-12958306 None:intergenic
TGTGTGATCGGTGGTGATGG+TGG 0.638153 5_4:-12956244 None:intergenic
CAACATTAATGGCATCTGAG+GGG 0.647803 5_4:-12958437 None:intergenic
GGCGGCATTTGTGTGATCGG+TGG 0.654425 5_4:-12956253 None:intergenic
AGAGAGAGTGAGAAACGGAG+CGG 0.655368 5_4:-12956281 None:intergenic
GACGAGAATGGAGAAGAGGG+AGG 0.677739 5_4:-12956326 None:intergenic
TGAAGTGGAACAAGAGATCG+AGG 0.688028 5_4:+12957426 Msa0838560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGAAATTTTGATTTTTTAA+AGG + chr5_4:12958499-12958518 Msa0838560:intron 10.0%
!!! AGAAATTTTGATTTTTTAAA+GGG + chr5_4:12958500-12958519 Msa0838560:intron 10.0%
!!! AAGAAATTTTGATTTTTTAA+AGG + chr5_4:12958499-12958518 Msa0838560:intron 10.0%
!!! AGAAATTTTGATTTTTTAAA+GGG + chr5_4:12958500-12958519 Msa0838560:intron 10.0%
!!! TTATTTTTACTAGCTTATAA+CGG - chr5_4:12956832-12956851 None:intergenic 15.0%
!! TTAAGTAATTCAAAATTTCA+GGG - chr5_4:12957076-12957095 None:intergenic 15.0%
!! TTTAAGTAATTCAAAATTTC+AGG - chr5_4:12957077-12957096 None:intergenic 15.0%
!!! GAAATTTTGATTTTTTAAAG+GGG + chr5_4:12958501-12958520 Msa0838560:intron 15.0%
!!! GAAATTTTGATTTTTTAAAG+GGG + chr5_4:12958501-12958520 Msa0838560:intron 15.0%
!! CAAATATAAAAATCATAAAG+AGG - chr5_4:12958705-12958724 None:intergenic 15.0%
!! ATTTCTTTACTTACATATAT+TGG - chr5_4:12958741-12958760 None:intergenic 15.0%
!! TAATATATATATACAAGCTA+AGG - chr5_4:12959537-12959556 None:intergenic 15.0%
!! TTATCAAATCAAATGTATTA+AGG + chr5_4:12959554-12959573 Msa0838560:three_prime_UTR 15.0%
!! TTTGTTCAATTAAGATTACA+AGG + chr5_4:12956735-12956754 Msa0838560:intron 20.0%
!! ACAAGAATAATACAAAACTA+TGG - chr5_4:12956953-12956972 None:intergenic 20.0%
!!! TAAATTCGTGTTTTATTGAA+CGG + chr5_4:12957355-12957374 Msa0838560:intron 20.0%
!! TTATATGTTAGGTATAGTTT+AGG + chr5_4:12957690-12957709 Msa0838560:intron 20.0%
!!! TAATTCTTTCTGTTTTAGTA+TGG - chr5_4:12958053-12958072 None:intergenic 20.0%
!! ACTAAAACAGAAAGAATTAT+TGG + chr5_4:12958054-12958073 Msa0838560:intron 20.0%
!! CAATTTGAATAAAGTTAAAC+AGG + chr5_4:12958092-12958111 Msa0838560:intron 20.0%
!!! TTGTTTTATTTTACTCTTTC+AGG + chr5_4:12958228-12958247 Msa0838560:intron 20.0%
!!! AATAAAAAAGCATAACAAGA+AGG - chr5_4:12958346-12958365 None:intergenic 20.0%
!! AAAATCAAAATTTCTTGACA+GGG - chr5_4:12958495-12958514 None:intergenic 20.0%
!! AAAAATCAAAATTTCTTGAC+AGG - chr5_4:12958496-12958515 None:intergenic 20.0%
!! AAAATCAAAATTTCTTGACA+GGG - chr5_4:12958495-12958514 None:intergenic 20.0%
!! AAAAATCAAAATTTCTTGAC+AGG - chr5_4:12958496-12958515 None:intergenic 20.0%
!!! TTTTTATATTTGATTTGTGC+AGG + chr5_4:12958713-12958732 Msa0838560:intron 20.0%
! AATGAAGAAGATGAAGATAA+AGG - chr5_4:12956151-12956170 None:intergenic 25.0%
! AATGAAAGAGAAAAAAGAGT+GGG - chr5_4:12956503-12956522 None:intergenic 25.0%
! AAATGAAAGAGAAAAAAGAG+TGG - chr5_4:12956504-12956523 None:intergenic 25.0%
!!! TCTTTTTTCTCTTTCATTTC+AGG + chr5_4:12956505-12956524 Msa0838560:intron 25.0%
!! TTGTTGTTGTTGAGAAAATT+TGG + chr5_4:12956969-12956988 Msa0838560:intron 25.0%
! ATAGTAGTTTATTCAGACAA+GGG + chr5_4:12957205-12957224 Msa0838560:CDS 25.0%
! GAAATCTTGAGAAAAATTGT+GGG - chr5_4:12957252-12957271 None:intergenic 25.0%
! AGAAATCTTGAGAAAAATTG+TGG - chr5_4:12957253-12957272 None:intergenic 25.0%
!!! TTTTTTGACCTGTATCTTAA+TGG + chr5_4:12957452-12957471 Msa0838560:intron 25.0%
!! ATATGGCATTTTATAAGGAT+CGG - chr5_4:12957507-12957526 None:intergenic 25.0%
! TGATTCTAAGCTTATATGTT+AGG + chr5_4:12957679-12957698 Msa0838560:intron 25.0%
! ATTACATTATACCATCTTCT+TGG + chr5_4:12957761-12957780 Msa0838560:intron 25.0%
! AATCAAAATTTCCAAGAAGA+TGG - chr5_4:12957775-12957794 None:intergenic 25.0%
!!! TGAGAGATTATAGCTTTTTT+GGG - chr5_4:12957846-12957865 None:intergenic 25.0%
!!! ATGAGAGATTATAGCTTTTT+TGG - chr5_4:12957847-12957866 None:intergenic 25.0%
! GATGCAATTAGACTAAATAA+AGG - chr5_4:12957959-12957978 None:intergenic 25.0%
! AAAACATTAGAACAAGGATA+AGG - chr5_4:12958160-12958179 None:intergenic 25.0%
! GAAAAGTGATATTATTAGTG+TGG + chr5_4:12958407-12958426 Msa0838560:CDS 25.0%
! GCATTTATTTGCAACATTAA+TGG - chr5_4:12958451-12958470 None:intergenic 25.0%
! TAATGTTGCAAATAAATGCA+AGG + chr5_4:12958452-12958471 Msa0838560:CDS 25.0%
! GCATTTATTTGCAACATTAA+TGG - chr5_4:12958451-12958470 None:intergenic 25.0%
! TAATGTTGCAAATAAATGCA+AGG + chr5_4:12958452-12958471 Msa0838560:CDS 25.0%
! TCAAATTTCAACTATTGAAG+TGG - chr5_4:12959303-12959322 None:intergenic 25.0%
!!! TTTCCTGATAATTTTTCAAC+AGG + chr5_4:12959440-12959459 Msa0838560:intron 25.0%
! ATTCCTGTTGAAAAATTATC+AGG - chr5_4:12959446-12959465 None:intergenic 25.0%
! ATATATACAAGCTAAGGTTA+AGG - chr5_4:12959531-12959550 None:intergenic 25.0%
AAGAAGATGAAGATAAAGGT+TGG - chr5_4:12956147-12956166 None:intergenic 30.0%
TGAATTACATGAAATGAGGA+AGG - chr5_4:12956376-12956395 None:intergenic 30.0%
GAGATGAATTACATGAAATG+AGG - chr5_4:12956380-12956399 None:intergenic 30.0%
AAGGTAGAGGGAAAAAAAAA+AGG - chr5_4:12956616-12956635 None:intergenic 30.0%
GCTCAATTTATAAAGGTAGA+GGG - chr5_4:12956628-12956647 None:intergenic 30.0%
CTCTACCTTTATAAATTGAG+CGG + chr5_4:12956627-12956646 Msa0838560:intron 30.0%
TATTGCCGCTCAATTTATAA+AGG - chr5_4:12956635-12956654 None:intergenic 30.0%
TTAACATTGAGAGAGAAGTT+AGG + chr5_4:12956666-12956685 Msa0838560:intron 30.0%
TAACATTGAGAGAGAAGTTA+GGG + chr5_4:12956667-12956686 Msa0838560:intron 30.0%
ATGACTAAAAAAGACTCGTT+TGG - chr5_4:12956884-12956903 None:intergenic 30.0%
ATACAAAACTATGGTCTGTT+TGG - chr5_4:12956944-12956963 None:intergenic 30.0%
AGTGTGTATAATAGTAACTG+TGG + chr5_4:12957007-12957026 Msa0838560:intron 30.0%
! TGTGGTTCTTTTGATCATTT+AGG + chr5_4:12957025-12957044 Msa0838560:intron 30.0%
! GTTTTCAATCTGAGTTACAA+CGG + chr5_4:12957139-12957158 Msa0838560:CDS 30.0%
GATAGTAGTTTATTCAGACA+AGG + chr5_4:12957204-12957223 Msa0838560:CDS 30.0%
TTTCTCAAGATTTCTTGTGA+TGG + chr5_4:12957258-12957277 Msa0838560:CDS 30.0%
! CTGCAATATGGCATTTTATA+AGG - chr5_4:12957512-12957531 None:intergenic 30.0%
CTTATAAAATGCCATATTGC+AGG + chr5_4:12957510-12957529 Msa0838560:intron 30.0%
AAAGACTAGATCATGAAGTA+TGG + chr5_4:12957572-12957591 Msa0838560:intron 30.0%
TGATTTATTCTATGACCTAG+TGG - chr5_4:12957911-12957930 None:intergenic 30.0%
TGGAATTATTTGCATGTAAG+AGG - chr5_4:12958119-12958138 None:intergenic 30.0%
ATTAGAACAAGGATAAGGAT+GGG - chr5_4:12958155-12958174 None:intergenic 30.0%
TGCTTCAAAACATTAGAACA+AGG - chr5_4:12958166-12958185 None:intergenic 30.0%
TTGAAGCAATAGCAATGTAT+TGG + chr5_4:12958178-12958197 Msa0838560:intron 30.0%
TGAAGCAATAGCAATGTATT+GGG + chr5_4:12958179-12958198 Msa0838560:intron 30.0%
! TTTACTCTTTCAGGTGATAA+TGG + chr5_4:12958237-12958256 Msa0838560:intron 30.0%
ATTTAAAAGTTGCCAATACC+TGG - chr5_4:12958315-12958334 None:intergenic 30.0%
!! CTAATAATATCACTTTTCCC+TGG - chr5_4:12958405-12958424 None:intergenic 30.0%
TTTATGATGTATTGCTTGAC+AGG + chr5_4:12958823-12958842 Msa0838560:CDS 30.0%
ATATAGCATGAATGTAAAGG+AGG - chr5_4:12958921-12958940 None:intergenic 30.0%
ACGATATAGCATGAATGTAA+AGG - chr5_4:12958924-12958943 None:intergenic 30.0%
ACGCAGGTAAAATATTGTTT+GGG + chr5_4:12959060-12959079 Msa0838560:intron 30.0%
TTACACATCTGCAAGTATTA+TGG + chr5_4:12959103-12959122 Msa0838560:intron 30.0%
AAAAGTCAACAAACAAGCTT+AGG - chr5_4:12959189-12959208 None:intergenic 30.0%
AAATCTTCGTAAATCATCTC+AGG + chr5_4:12959235-12959254 Msa0838560:CDS 30.0%
! ATGTCTTGAAAATTTTCCTG+TGG + chr5_4:12959387-12959406 Msa0838560:intron 30.0%
!! TTTTTCAACAGGAATTACTG+CGG + chr5_4:12959451-12959470 Msa0838560:intron 30.0%
AAGATGAAGATAAAGGTTGG+TGG - chr5_4:12956144-12956163 None:intergenic 35.0%
CATGAAATGAGGAAGGATTT+GGG - chr5_4:12956369-12956388 None:intergenic 35.0%
ACATGAAATGAGGAAGGATT+TGG - chr5_4:12956370-12956389 None:intergenic 35.0%
GTTATGATGATCGCTGAAAT+TGG - chr5_4:12956412-12956431 None:intergenic 35.0%
CGCTCAATTTATAAAGGTAG+AGG - chr5_4:12956629-12956648 None:intergenic 35.0%
!! ATTTTCTGGAAATGGTGACA+CGG - chr5_4:12957172-12957191 None:intergenic 35.0%
GCATACATACCTACAACAAT+GGG - chr5_4:12957297-12957316 None:intergenic 35.0%
AGCATACATACCTACAACAA+TGG - chr5_4:12957298-12957317 None:intergenic 35.0%
! AAAGCTTTTAGATGCTGAAG+TGG + chr5_4:12957411-12957430 Msa0838560:CDS 35.0%
AAAATGCCATATTGCAGGAT+TGG + chr5_4:12957515-12957534 Msa0838560:intron 35.0%
CAACTAGGTTATTCACAAAC+TGG - chr5_4:12957552-12957571 None:intergenic 35.0%
! CATGATCTAGTCTTTCAACT+AGG - chr5_4:12957567-12957586 None:intergenic 35.0%
! TATTCTATGACCTAGTGGAT+GGG - chr5_4:12957906-12957925 None:intergenic 35.0%
TTATTCTATGACCTAGTGGA+TGG - chr5_4:12957907-12957926 None:intergenic 35.0%
CATTAGAACAAGGATAAGGA+TGG - chr5_4:12958156-12958175 None:intergenic 35.0%
AGTTTATAATTCCTTCAGCC+AGG + chr5_4:12958384-12958403 Msa0838560:intron 35.0%
GTTTATAATTCCTTCAGCCA+GGG + chr5_4:12958385-12958404 Msa0838560:intron 35.0%
!! AGAGGTTTTGTCTAACTTCT+TGG - chr5_4:12958687-12958706 None:intergenic 35.0%
AAACTTGCACACAGAATCTA+TGG - chr5_4:12958898-12958917 None:intergenic 35.0%
TATGCATTTAGCTATCAAGC+AGG + chr5_4:12959025-12959044 Msa0838560:CDS 35.0%
GACGCAGGTAAAATATTGTT+TGG + chr5_4:12959059-12959078 Msa0838560:intron 35.0%
AAGCTTGAATACCCAAATCT+TGG + chr5_4:12959147-12959166 Msa0838560:intron 35.0%
CCATGAAAATGCCAAGATTT+GGG - chr5_4:12959161-12959180 None:intergenic 35.0%
TCCATGAAAATGCCAAGATT+TGG - chr5_4:12959162-12959181 None:intergenic 35.0%
!! AAGTTCTGAAGAGGAACTTA+TGG + chr5_4:12959411-12959430 Msa0838560:intron 35.0%
! TGAGGAAGGATTTGGGTTTA+TGG - chr5_4:12956362-12956381 None:intergenic 40.0%
GAAGCTTCTATTCTTCTCTC+AGG + chr5_4:12956459-12956478 Msa0838560:five_prime_UTR 40.0%
TCAGGGATTCATACACATCA+TGG - chr5_4:12957059-12957078 None:intergenic 40.0%
GCAGAAACAATAGCACACTA+TGG + chr5_4:12957102-12957121 Msa0838560:five_prime_UTR 40.0%
CAATAGCACACTATGGAATG+TGG + chr5_4:12957109-12957128 Msa0838560:exon 40.0%
!! TTTTCTGGAAATGGTGACAC+GGG - chr5_4:12957171-12957190 None:intergenic 40.0%
!! CTCGAGCTATTTTCTGGAAA+TGG - chr5_4:12957180-12957199 None:intergenic 40.0%
TTCCAGAAAATAGCTCGAGA+AGG + chr5_4:12957181-12957200 Msa0838560:CDS 40.0%
TCCAGAAAATAGCTCGAGAA+GGG + chr5_4:12957182-12957201 Msa0838560:CDS 40.0%
TATGTTCTGCCCATTGTTGT+AGG + chr5_4:12957285-12957304 Msa0838560:CDS 40.0%
TATGTATGCTATGCCGTGAT+AGG + chr5_4:12957308-12957327 Msa0838560:intron 40.0%
CATCGATGCATATCCTATCA+CGG - chr5_4:12957324-12957343 None:intergenic 40.0%
! AACGGTTCTTTTGTTGATGC+AGG + chr5_4:12957373-12957392 Msa0838560:intron 40.0%
GGTTATTCACAAACTGGAAC+TGG - chr5_4:12957546-12957565 None:intergenic 40.0%
GCCAATGAACATTCAAGCAT+TGG + chr5_4:12957623-12957642 Msa0838560:intron 40.0%
GCCAATGCTTGAATGTTCAT+TGG - chr5_4:12957627-12957646 None:intergenic 40.0%
!!! AGCTTTTTTGGGAGTTCTCA+TGG - chr5_4:12957835-12957854 None:intergenic 40.0%
TGGATGGGTACAGTATGATT+TGG - chr5_4:12957891-12957910 None:intergenic 40.0%
TGCATCATTAGTCCTTCTCA+AGG + chr5_4:12957973-12957992 Msa0838560:intron 40.0%
CAACATTAATGGCATCTGAG+GGG - chr5_4:12958440-12958459 None:intergenic 40.0%
GCAACATTAATGGCATCTGA+GGG - chr5_4:12958441-12958460 None:intergenic 40.0%
TGCAACATTAATGGCATCTG+AGG - chr5_4:12958442-12958461 None:intergenic 40.0%
CTTCTTGGCACAAAATGCTT+AGG - chr5_4:12958672-12958691 None:intergenic 40.0%
TTCACAGACGCTATAAGACT+CGG + chr5_4:12958765-12958784 Msa0838560:CDS 40.0%
TATAAGACTCGGCTATGGAA+TGG + chr5_4:12958776-12958795 Msa0838560:CDS 40.0%
ATAAGACTCGGCTATGGAAT+GGG + chr5_4:12958777-12958796 Msa0838560:CDS 40.0%
GGGCAGAGTGCATAATAAAA+AGG + chr5_4:12958797-12958816 Msa0838560:CDS 40.0%
! GTTTGTTACAGTGCCATAGA+TGG + chr5_4:12958963-12958982 Msa0838560:intron 40.0%
CAGGAAAGATTTAATGACGC+AGG + chr5_4:12959044-12959063 Msa0838560:CDS 40.0%
! CCCAAATCTTGGCATTTTCA+TGG + chr5_4:12959158-12959177 Msa0838560:intron 40.0%
!!! TGTTGACTTTTGCAGCTACA+TGG + chr5_4:12959198-12959217 Msa0838560:intron 40.0%
!! TCATCTCAGGAGCACTAATT+AGG + chr5_4:12959248-12959267 Msa0838560:exon 40.0%
! GGAGCACTAATTAGGTTGTT+AGG + chr5_4:12959256-12959275 Msa0838560:exon 40.0%
GTATTAAGGCCTAAAACCTC+TGG + chr5_4:12959568-12959587 Msa0838560:three_prime_UTR 40.0%
! GAGAATCTTCCAGAGGTTTT+AGG - chr5_4:12959580-12959599 None:intergenic 40.0%
ATTTGTGTGATCGGTGGTGA+TGG - chr5_4:12956250-12956269 None:intergenic 45.0%
GAAGGAGAGAGAGTGAGAAA+CGG - chr5_4:12956289-12956308 None:intergenic 45.0%
GTGAATGGGAGAGAAATCGA+AGG - chr5_4:12956307-12956326 None:intergenic 45.0%
!! TCCCTTCTCGAGCTATTTTC+TGG - chr5_4:12957186-12957205 None:intergenic 45.0%
TGAAGTGGAACAAGAGATCG+AGG + chr5_4:12957426-12957445 Msa0838560:CDS 45.0%
GTGCACAGCCATTAAGATAC+AGG - chr5_4:12957463-12957482 None:intergenic 45.0%
TTCACAAACTGGAACTGGTC+CGG - chr5_4:12957541-12957560 None:intergenic 45.0%
TCATACTGTACCCATCCACT+AGG + chr5_4:12957893-12957912 Msa0838560:intron 45.0%
CTCACACAATGTCCTTGAGA+AGG - chr5_4:12957988-12958007 None:intergenic 45.0%
GGATGGGAAGATTGCTTAAG+TGG - chr5_4:12958139-12958158 None:intergenic 45.0%
ATTGTACCTCAGCCAGGTAT+TGG + chr5_4:12958300-12958319 Msa0838560:intron 45.0%
!! TATCACTTTTCCCTGGCTGA+AGG - chr5_4:12958398-12958417 None:intergenic 45.0%
ACACAGAATCTATGGTGGCA+AGG - chr5_4:12958890-12958909 None:intergenic 45.0%
CTTGCACACAGAATCTATGG+TGG - chr5_4:12958895-12958914 None:intergenic 45.0%
TGCCATAGATGGTCCAGATT+CGG + chr5_4:12958974-12958993 Msa0838560:CDS 45.0%
TACCGAATCTGGACCATCTA+TGG - chr5_4:12958979-12958998 None:intergenic 45.0%
AGTTCTTGAGCTACCGAATC+TGG - chr5_4:12958990-12959009 None:intergenic 45.0%
TGGGTATTCAAGCTTGCAGA+AGG - chr5_4:12959142-12959161 None:intergenic 45.0%
!! TCCTGTGGTAAGTTCTGAAG+AGG + chr5_4:12959402-12959421 Msa0838560:intron 45.0%
TCCTCTTCAGAACTTACCAC+AGG - chr5_4:12959406-12959425 None:intergenic 45.0%
GAAGTACGAGAATCTTCCAG+AGG - chr5_4:12959587-12959606 None:intergenic 45.0%
TTCTCCATCCAACCGATCAC+TGG + chr5_4:12956216-12956235 Msa0838560:five_prime_UTR 50.0%
AGAGAGAGTGAGAAACGGAG+CGG - chr5_4:12956284-12956303 None:intergenic 50.0%
TGGAGAAGAGGGAGGTGAAT+GGG - chr5_4:12956321-12956340 None:intergenic 50.0%
ATGGAGAAGAGGGAGGTGAA+TGG - chr5_4:12956322-12956341 None:intergenic 50.0%
AGCGACGAGAATGGAGAAGA+GGG - chr5_4:12956332-12956351 None:intergenic 50.0%
AGTGGGAGAGAGAGAGAAAG+AGG - chr5_4:12956486-12956505 None:intergenic 50.0%
! TGCCATATTGCAGGATTGGC+CGG + chr5_4:12957519-12957538 Msa0838560:intron 50.0%
TACCTGGCTGAGGTACAATC+TGG - chr5_4:12958299-12958318 None:intergenic 50.0%
AAGTTGCCAATACCTGGCTG+AGG - chr5_4:12958309-12958328 None:intergenic 50.0%
GACGCTATAAGACTCGGCTA+TGG + chr5_4:12958771-12958790 Msa0838560:CDS 50.0%
CAAGGATGCTACAGGTGACA+CGG - chr5_4:12958872-12958891 None:intergenic 50.0%
TATGGTGGCAAGGATGCTAC+AGG - chr5_4:12958880-12958899 None:intergenic 50.0%
!! TGTGTGATCGGTGGTGATGG+TGG - chr5_4:12956247-12956266 None:intergenic 55.0%
! GGTGGCGGCATTTGTGTGAT+CGG - chr5_4:12956259-12956278 None:intergenic 55.0%
GAGAGAGTGAGAAACGGAGC+GGG - chr5_4:12956283-12956302 None:intergenic 55.0%
GACGAGAATGGAGAAGAGGG+AGG - chr5_4:12956329-12956348 None:intergenic 55.0%
GAGCGACGAGAATGGAGAAG+AGG - chr5_4:12956333-12956352 None:intergenic 55.0%
GTCCGGCCAATCCTGCAATA+TGG - chr5_4:12957524-12957543 None:intergenic 55.0%
TGCCAGATTGTACCTCAGCC+AGG + chr5_4:12958294-12958313 Msa0838560:CDS 55.0%
!! ATGGTGGTGGCGCCAGTGAT+CGG - chr5_4:12956231-12956250 None:intergenic 60.0%
!! GTGATCGGTGGTGATGGTGG+TGG - chr5_4:12956244-12956263 None:intergenic 60.0%
GGCGGCATTTGTGTGATCGG+TGG - chr5_4:12956256-12956275 None:intergenic 60.0%
AGAGTGAGAAACGGAGCGGG+AGG - chr5_4:12956280-12956299 None:intergenic 60.0%
GGAAGCGAGAGCGACGAGAA+TGG - chr5_4:12956341-12956360 None:intergenic 60.0%
GGCGCCAGTGATCGGTTGGA+TGG - chr5_4:12956223-12956242 None:intergenic 65.0%
! TGGTGGCGCCAGTGATCGGT+TGG - chr5_4:12956227-12956246 None:intergenic 65.0%
AGAAACGGAGCGGGAGGTGG+CGG - chr5_4:12956274-12956293 None:intergenic 65.0%
GTGAGAAACGGAGCGGGAGG+TGG - chr5_4:12956277-12956296 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 12956104 12959606 12956104 ID=Msa0838560;Name=Msa0838560
chr5_4 mRNA 12956104 12959606 12956104 ID=Msa0838560-mRNA-1;Parent=Msa0838560;Name=Msa0838560-mRNA-1;_AED=0.24;_eAED=0.24;_QI=456|1|1|1|0.77|0.7|10|157|227
chr5_4 exon 12956104 12956480 12956104 ID=Msa0838560-mRNA-1:exon:5758;Parent=Msa0838560-mRNA-1
chr5_4 exon 12957047 12957306 12957047 ID=Msa0838560-mRNA-1:exon:5759;Parent=Msa0838560-mRNA-1
chr5_4 exon 12957395 12957447 12957395 ID=Msa0838560-mRNA-1:exon:5760;Parent=Msa0838560-mRNA-1
chr5_4 exon 12957532 12957588 12957532 ID=Msa0838560-mRNA-1:exon:5761;Parent=Msa0838560-mRNA-1
chr5_4 exon 12958250 12958315 12958250 ID=Msa0838560-mRNA-1:exon:5762;Parent=Msa0838560-mRNA-1
chr5_4 exon 12958402 12958473 12958402 ID=Msa0838560-mRNA-1:exon:5763;Parent=Msa0838560-mRNA-1
chr5_4 exon 12958735 12958844 12958735 ID=Msa0838560-mRNA-1:exon:5764;Parent=Msa0838560-mRNA-1
chr5_4 exon 12958974 12959065 12958974 ID=Msa0838560-mRNA-1:exon:5765;Parent=Msa0838560-mRNA-1
chr5_4 exon 12959213 12959277 12959213 ID=Msa0838560-mRNA-1:exon:5766;Parent=Msa0838560-mRNA-1
chr5_4 exon 12959462 12959606 12959462 ID=Msa0838560-mRNA-1:exon:5767;Parent=Msa0838560-mRNA-1
chr5_4 five_prime_UTR 12956104 12956480 12956104 ID=Msa0838560-mRNA-1:five_prime_utr;Parent=Msa0838560-mRNA-1
chr5_4 five_prime_UTR 12957047 12957125 12957047 ID=Msa0838560-mRNA-1:five_prime_utr;Parent=Msa0838560-mRNA-1
chr5_4 CDS 12957126 12957306 12957126 ID=Msa0838560-mRNA-1:cds;Parent=Msa0838560-mRNA-1
chr5_4 CDS 12957395 12957447 12957395 ID=Msa0838560-mRNA-1:cds;Parent=Msa0838560-mRNA-1
chr5_4 CDS 12957532 12957588 12957532 ID=Msa0838560-mRNA-1:cds;Parent=Msa0838560-mRNA-1
chr5_4 CDS 12958250 12958315 12958250 ID=Msa0838560-mRNA-1:cds;Parent=Msa0838560-mRNA-1
chr5_4 CDS 12958402 12958473 12958402 ID=Msa0838560-mRNA-1:cds;Parent=Msa0838560-mRNA-1
chr5_4 CDS 12958735 12958844 12958735 ID=Msa0838560-mRNA-1:cds;Parent=Msa0838560-mRNA-1
chr5_4 CDS 12958974 12959065 12958974 ID=Msa0838560-mRNA-1:cds;Parent=Msa0838560-mRNA-1
chr5_4 CDS 12959213 12959265 12959213 ID=Msa0838560-mRNA-1:cds;Parent=Msa0838560-mRNA-1
chr5_4 three_prime_UTR 12959266 12959277 12959266 ID=Msa0838560-mRNA-1:three_prime_utr;Parent=Msa0838560-mRNA-1
chr5_4 three_prime_UTR 12959462 12959606 12959462 ID=Msa0838560-mRNA-1:three_prime_utr;Parent=Msa0838560-mRNA-1
Gene Sequence

>Msa0838560

ATGTGGAGACATCGTTTTCAATCTGAGTTACAACGGAAATCACCCGTGTCACCATTTCCAGAAAATAGCTCGAGAAGGGATAGTAGTTTATTCAGACAAGGGTTTCTACAGCGTTTTCAGCATCCCACAATTTTTCTCAAGATTTCTTGTGATGGAGACTATGTTCTGCCCATTGTTGTAGGAAATATTGCAATTGAAAAGCTTTTAGATGCTGAAGTGGAACAAGAGATCGAGGATTGGCCGGACCAGTTCCAGTTTGTGAATAACCTAGTTGAAAGACTAGATCATGAAGTGATAATGGTGAAAATTACAGAGCGAGTAGTCAGTACTTACTTTGCCAGATTGTACCTCAGCCAGCCAGGGAAAAGTGATATTATTAGTGTGGATTTGCGCCCCTCAGATGCCATTAATGTTGCAAATAAATGCAAGGCTCCAATATATGTAAGTAAAGAAATTGTTTTCACAGACGCTATAAGACTCGGCTATGGAATGGGCAGAGTGCATAATAAAAAGGCTATTTATGATGTATTGCTTGACAGTGCCATAGATGGTCCAGATTCGGTAGCTCAAGAACTAAGTATGATGCATAATATGCATTTAGCTATCAAGCAGGAAAGATTTAATGACGCAGCTACATGGAGAGACAAACTTGAAAATCTTCGTAAATCATCTCAGGAGCACTAA

Protein sequence

>Msa0838560

MWRHRFQSELQRKSPVSPFPENSSRRDSSLFRQGFLQRFQHPTIFLKISCDGDYVLPIVVGNIAIEKLLDAEVEQEIEDWPDQFQFVNNLVERLDHEVIMVKITERVVSTYFARLYLSQPGKSDIISVDLRPSDAINVANKCKAPIYVSKEIVFTDAIRLGYGMGRVHNKKAIYDVLLDSAIDGPDSVAQELSMMHNMHLAIKQERFNDAATWRDKLENLRKSSQEH*