AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0143950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0143950 MtrunA17_Chr1g0159991 90.957 376 24 1 327 692 8 383 0.0 691
Msa0143950 MtrunA17_Chr1g0159991 60.335 358 101 3 3 327 9 358 1.97e-143 424
Msa0143950 MtrunA17_Chr1g0159981 85.185 378 46 1 325 692 16 393 0.0 651
Msa0143950 MtrunA17_Chr1g0159981 62.079 356 93 4 6 327 21 368 4.46e-146 431
Msa0143950 MtrunA17_Chr1g0160011 83.155 374 50 3 327 689 11 382 0.0 622
Msa0143950 MtrunA17_Chr1g0160011 57.990 388 107 7 3 351 12 382 8.50e-140 414
Msa0143950 MtrunA17_Chr1g0159971 79.740 385 36 4 1 351 15 391 0.0 597
Msa0143950 MtrunA17_Chr1g0159971 64.416 385 121 3 323 691 9 393 5.04e-178 513
Msa0143950 MtrunA17_Chr1g0160031 78.249 377 70 2 326 692 10 384 0.0 593
Msa0143950 MtrunA17_Chr1g0160031 54.830 383 126 6 3 351 12 381 2.18e-135 403
Msa0143950 MtrunA17_Chr1g0160101 58.854 384 145 3 320 691 7 389 2.38e-154 452
Msa0143950 MtrunA17_Chr1g0160101 62.431 362 94 4 2 329 14 367 2.29e-149 439
Msa0143950 MtrunA17_Chr7g0254461 52.520 377 165 4 329 691 17 393 2.13e-136 406
Msa0143950 MtrunA17_Chr7g0254461 50.919 381 140 6 10 351 19 391 3.65e-123 372
Msa0143950 MtrunA17_Chr8g0381581 51.706 381 169 4 318 685 5 383 5.69e-134 400
Msa0143950 MtrunA17_Chr8g0381581 50.000 380 144 5 7 350 17 386 5.08e-119 361
Msa0143950 MtrunA17_Chr7g0226941 47.778 360 169 5 347 691 25 380 4.44e-106 327
Msa0143950 MtrunA17_Chr7g0226941 44.350 354 153 4 13 330 14 359 1.98e-91 289
Msa0143950 MtrunA17_Chr7g0275291 40.957 376 200 6 329 689 7 375 1.12e-90 287
Msa0143950 MtrunA17_Chr7g0275291 37.859 383 191 6 9 356 10 380 1.03e-76 251
Msa0143950 MtrunA17_Chr6g0450701 43.526 363 174 10 345 689 29 378 2.06e-88 281
Msa0143950 MtrunA17_Chr6g0450701 40.584 377 172 8 10 351 19 378 5.31e-81 262
Msa0143950 MtrunA17_Chr7g0273101 45.070 355 172 10 344 681 18 366 8.31e-88 280
Msa0143950 MtrunA17_Chr7g0273101 41.765 340 150 7 29 330 26 355 4.25e-74 244
Msa0143950 MtrunA17_Chr7g0226911 39.474 380 201 9 334 689 10 384 6.27e-85 273
Msa0143950 MtrunA17_Chr7g0226911 38.919 370 172 8 24 351 27 384 5.30e-74 244
Msa0143950 MtrunA17_Chr8g0352901 41.818 385 184 10 329 689 4 372 1.81e-84 271
Msa0143950 MtrunA17_Chr8g0352901 37.903 372 174 8 21 351 17 372 6.68e-67 224
Msa0143950 MtrunA17_Chr7g0226931 41.371 394 184 12 335 689 13 398 3.80e-84 271
Msa0143950 MtrunA17_Chr7g0226931 40.000 370 167 8 11 330 15 379 1.07e-75 249
Msa0143950 MtrunA17_Chr1g0191461 43.127 371 185 11 331 683 7 369 3.69e-83 267
Msa0143950 MtrunA17_Chr1g0191461 37.772 368 176 9 4 330 1 356 7.13e-69 229
Msa0143950 MtrunA17_Chr8g0347751 40.000 360 188 6 350 689 31 382 8.52e-83 267
Msa0143950 MtrunA17_Chr8g0347751 37.203 379 191 4 15 356 19 387 1.82e-73 242
Msa0143950 MtrunA17_Chr6g0450711 39.949 393 190 11 329 690 85 462 1.48e-81 266
Msa0143950 MtrunA17_Chr6g0450711 41.176 340 152 5 23 327 113 439 1.15e-70 237
Msa0143950 MtrunA17_Chr6g0450721 37.760 384 193 9 329 690 1 360 1.31e-78 255
Msa0143950 MtrunA17_Chr6g0450721 39.130 345 153 5 16 327 17 337 7.92e-67 224
Msa0143950 MtrunA17_Chr6g0450731 40.390 359 178 10 347 690 25 362 1.93e-78 254
Msa0143950 MtrunA17_Chr6g0450731 39.031 351 147 9 16 327 17 339 2.55e-66 223
Msa0143950 MtrunA17_Chr7g0271551 41.261 349 173 10 355 690 36 365 1.32e-75 247
Msa0143950 MtrunA17_Chr7g0271551 38.310 355 146 10 32 345 36 358 8.30e-61 208
Msa0143950 MtrunA17_Chr8g0339251 40.870 345 160 12 329 654 4 323 5.84e-65 218
Msa0143950 MtrunA17_Chr8g0339251 37.425 334 142 8 21 314 17 323 2.06e-57 197
Msa0143950 MtrunA17_Chr2g0283531 35.447 347 156 11 30 330 29 353 2.46e-49 177
Msa0143950 MtrunA17_Chr2g0283531 35.196 358 185 13 353 683 29 366 6.96e-48 173
Msa0143950 MtrunA17_Chr2g0283501 33.515 367 197 11 343 681 18 365 1.87e-45 166
Msa0143950 MtrunA17_Chr2g0283501 31.746 378 174 11 9 334 13 358 1.78e-44 163
Msa0143950 MtrunA17_Chr2g0283481 33.512 373 203 12 335 681 27 380 2.56e-45 166
Msa0143950 MtrunA17_Chr2g0283481 32.708 373 174 12 5 327 21 366 1.57e-42 159
Msa0143950 MtrunA17_Chr3g0104821 33.611 360 189 14 353 683 42 380 8.82e-44 162
Msa0143950 MtrunA17_Chr3g0104821 34.226 336 176 9 30 330 42 367 4.02e-41 154
Msa0143950 MtrunA17_Chr2g0317261 30.518 367 175 10 9 330 7 338 1.78e-42 157
Msa0143950 MtrunA17_Chr2g0317261 30.878 353 193 11 353 683 28 351 4.70e-40 150
Msa0143950 MtrunA17_Chr2g0317271 30.518 367 175 10 9 330 7 338 5.87e-42 156
Msa0143950 MtrunA17_Chr2g0317271 30.878 353 193 11 353 683 28 351 1.14e-39 149
Msa0143950 MtrunA17_Chr2g0283511 30.749 387 221 11 324 683 2 368 8.76e-42 156
Msa0143950 MtrunA17_Chr2g0283511 31.965 341 158 8 37 327 36 352 1.81e-39 150
Msa0143950 MtrunA17_Chr0c01g0489571 31.742 356 191 10 6 330 4 338 2.65e-41 154
Msa0143950 MtrunA17_Chr0c01g0489571 30.878 353 193 11 353 683 28 351 1.51e-39 149
Msa0143950 MtrunA17_Chr0c01g0489581 30.541 370 177 10 6 330 4 338 5.22e-41 153
Msa0143950 MtrunA17_Chr0c01g0489581 30.595 353 194 11 353 683 28 351 4.97e-39 147
Msa0143950 MtrunA17_Chr4g0057991 31.534 352 197 12 353 681 37 367 1.46e-38 147
Msa0143950 MtrunA17_Chr4g0057991 27.937 383 191 11 4 334 11 360 1.85e-30 124
Msa0143950 MtrunA17_Chr2g0301581 30.704 355 160 10 23 330 25 340 3.34e-38 145
Msa0143950 MtrunA17_Chr2g0301581 32.240 366 183 16 353 691 32 359 6.80e-35 136
Msa0143950 MtrunA17_Chr3g0112821 31.977 344 165 11 30 330 28 345 3.50e-38 145
Msa0143950 MtrunA17_Chr3g0112821 32.022 356 192 15 353 683 28 358 6.26e-37 142
Msa0143950 MtrunA17_Chr2g0301541 30.423 355 161 10 23 330 25 340 9.74e-38 144
Msa0143950 MtrunA17_Chr2g0301541 31.694 366 185 16 353 691 32 359 2.00e-33 132
Msa0143950 MtrunA17_Chr3g0093031 31.897 348 165 11 30 330 28 350 4.94e-37 142
Msa0143950 MtrunA17_Chr3g0093031 31.667 360 193 15 353 683 28 363 5.48e-35 136
Msa0143950 MtrunA17_Chr3g0112691 32.081 346 165 10 30 330 28 348 4.69e-36 139
Msa0143950 MtrunA17_Chr3g0112691 31.073 354 201 11 353 683 28 361 2.30e-35 137
Msa0143950 MtrunA17_Chr3g0096551 30.833 360 165 10 30 330 27 361 1.15e-34 135
Msa0143950 MtrunA17_Chr3g0096551 30.435 368 199 14 353 683 27 374 5.00e-32 128
Msa0143950 MtrunA17_Chr8g0341001 30.435 368 202 15 330 673 9 346 8.81e-34 132
Msa0143950 MtrunA17_Chr8g0341001 25.946 370 207 10 1 330 1 343 4.30e-24 104
Msa0143950 MtrunA17_Chr2g0283541 33.871 310 137 10 30 330 29 279 1.99e-33 130
Msa0143950 MtrunA17_Chr2g0283541 32.627 236 131 10 472 691 75 298 5.32e-23 100
Msa0143950 MtrunA17_Chr2g0330781 30.994 342 188 13 354 673 30 345 2.41e-33 131
Msa0143950 MtrunA17_Chr2g0330781 28.614 332 196 12 31 335 30 347 3.60e-25 107
Msa0143950 MtrunA17_Chr8g0344941 30.623 369 198 13 332 673 18 355 1.22e-31 127
Msa0143950 MtrunA17_Chr8g0344941 28.453 362 190 11 10 330 19 352 2.04e-27 114
Msa0143950 MtrunA17_Chr8g0349341 30.746 335 197 10 355 676 37 349 2.06e-31 126
Msa0143950 MtrunA17_Chr8g0349341 28.395 324 190 12 32 330 37 343 3.36e-26 110
Msa0143950 MtrunA17_Chr8g0349321 30.746 335 197 10 355 676 37 349 2.66e-31 125
Msa0143950 MtrunA17_Chr8g0349321 28.923 325 187 12 32 330 37 343 7.38e-23 100
Msa0143950 MtrunA17_Chr5g0432101 27.366 391 215 17 333 689 7 362 1.41e-30 124
Msa0143950 MtrunA17_Chr4g0027521 29.107 347 200 12 354 678 26 348 2.72e-29 119
Msa0143950 MtrunA17_Chr4g0027521 25.926 351 173 11 31 330 26 340 4.24e-21 95.5
Msa0143950 MtrunA17_Chr2g0301591 34.091 264 150 10 23 267 25 283 1.68e-28 115
Msa0143950 MtrunA17_Chr2g0301591 30.201 298 160 11 334 607 10 283 3.35e-22 97.4
Msa0143950 MtrunA17_Chr5g0396511 28.205 351 205 13 357 686 48 372 2.25e-27 114
Msa0143950 MtrunA17_Chr5g0396511 26.866 335 173 14 34 326 48 352 2.70e-17 84.3
Msa0143950 MtrunA17_Chr8g0374101 28.108 370 223 13 329 676 12 360 3.34e-27 114
Msa0143950 MtrunA17_Chr8g0374101 23.720 371 203 12 1 326 15 350 6.45e-17 83.2
Msa0143950 MtrunA17_Chr1g0156911 30.523 344 185 13 350 669 32 345 4.15e-27 113
Msa0143950 MtrunA17_Chr1g0156911 25.205 365 192 13 16 334 21 350 1.76e-18 87.8
Msa0143950 MtrunA17_Chr5g0438631 28.969 359 205 16 335 669 6 338 1.96e-26 111
Msa0143950 MtrunA17_Chr5g0438631 25.275 364 197 12 11 330 7 339 4.31e-20 92.4
Msa0143950 MtrunA17_Chr2g0320671 28.235 340 199 13 354 673 29 343 3.54e-26 110
Msa0143950 MtrunA17_Chr2g0320671 27.989 368 209 16 1 335 1 345 1.88e-19 90.5
Msa0143950 MtrunA17_Chr3g0099161 30.028 353 196 13 354 681 91 417 6.67e-26 111
Msa0143950 MtrunA17_Chr3g0099161 25.439 342 179 14 31 327 91 401 8.88e-14 73.9
Msa0143950 MtrunA17_Chr5g0444401 29.282 362 194 14 354 686 27 355 9.84e-26 109
Msa0143950 MtrunA17_Chr4g0068441 29.442 394 219 18 318 686 2 361 4.10e-25 107
Msa0143950 MtrunA17_Chr1g0156921 27.493 371 208 17 329 667 8 349 4.74e-25 107
Msa0143950 MtrunA17_Chr7g0274991 28.378 370 211 14 335 677 8 350 5.71e-25 107
Msa0143950 MtrunA17_Chr2g0301641 29.107 347 199 15 355 679 43 364 6.33e-25 107
Msa0143950 MtrunA17_Chr2g0301641 26.984 378 195 15 1 330 11 355 3.17e-22 99.8
Msa0143950 MtrunA17_Chr5g0438621 28.219 365 200 15 329 668 11 338 6.77e-25 106
Msa0143950 MtrunA17_Chr1g0156931 28.691 359 196 14 339 673 30 352 8.70e-25 106
Msa0143950 MtrunA17_Chr1g0157001 27.832 309 185 11 379 673 63 347 1.26e-24 106
Msa0143950 MtrunA17_Chr3g0120861 27.042 355 206 14 348 678 31 356 1.31e-24 106
Msa0143950 MtrunA17_Chr3g0120861 25.449 334 179 11 31 323 37 341 1.60e-20 94.0
Msa0143950 MtrunA17_Chr8g0349301 31.741 293 164 11 355 632 37 308 1.47e-24 105
Msa0143950 MtrunA17_Chr8g0349301 27.181 298 178 10 32 304 37 320 3.86e-23 100
Msa0143950 MtrunA17_Chr8g0349331 28.012 332 198 11 10 330 10 311 2.07e-24 105
Msa0143950 MtrunA17_Chr8g0349331 27.869 366 186 14 325 669 2 310 2.54e-24 104
Msa0143950 MtrunA17_Chr3g0104831 29.897 291 161 11 416 683 29 299 2.10e-24 104
Msa0143950 MtrunA17_Chr3g0104831 28.897 263 147 7 98 330 34 286 1.08e-17 84.7
Msa0143950 MtrunA17_Chr7g0275011 30.556 360 188 15 355 686 34 359 2.71e-24 105
Msa0143950 MtrunA17_Chr2g0294301 28.530 347 206 12 355 682 35 358 3.69e-24 105
Msa0143950 MtrunA17_Chr7g0275001 29.360 344 197 14 355 677 25 343 7.60e-24 103
Msa0143950 MtrunA17_Chr5g0438641 28.418 373 208 15 323 669 2 341 7.96e-24 103
Msa0143950 MtrunA17_Chr5g0438641 26.036 338 172 11 31 323 31 335 5.03e-19 89.4
Msa0143950 MtrunA17_Chr1g0156901 26.503 366 209 14 329 667 24 356 9.94e-24 103
Msa0143950 MtrunA17_Chr4g0046151 28.721 383 199 19 335 676 17 366 1.20e-23 103
Msa0143950 MtrunA17_Chr4g0046151 26.197 355 201 14 10 325 16 348 8.21e-17 82.8
Msa0143950 MtrunA17_Chr5g0405821 30.422 332 188 16 354 665 42 350 1.48e-23 103
Msa0143950 MtrunA17_Chr5g0405821 25.419 358 194 12 11 325 23 350 1.27e-18 88.2
Msa0143950 MtrunA17_Chr5g0405831 27.557 352 209 13 350 680 38 364 2.60e-23 102
Msa0143950 MtrunA17_Chr3g0105401 28.235 340 192 14 354 669 27 338 2.77e-23 102
Msa0143950 MtrunA17_Chr3g0105401 26.608 342 189 14 31 335 27 343 4.46e-17 83.6
Msa0143950 MtrunA17_Chr1g0156891 27.397 365 209 14 330 667 15 350 2.89e-23 102
Msa0143950 MtrunA17_Chr1g0156891 24.119 369 205 12 5 329 15 352 1.94e-17 84.7
Msa0143950 MtrunA17_Chr3g0131321 27.507 349 207 12 353 681 32 354 3.33e-23 102
Msa0143950 MtrunA17_Chr3g0099231 29.143 350 202 14 354 681 27 352 4.07e-23 102
Msa0143950 MtrunA17_Chr2g0294311 27.990 393 214 18 328 686 9 366 4.26e-23 102
Msa0143950 MtrunA17_Chr2g0294311 26.503 366 192 15 10 326 10 347 1.74e-16 82.0
Msa0143950 MtrunA17_Chr3g0099151 28.242 347 199 12 354 676 86 406 5.30e-23 102
Msa0143950 MtrunA17_Chr8g0371481 27.714 350 199 14 349 673 35 355 8.68e-23 100
Msa0143950 MtrunA17_Chr8g0380041 25.852 352 217 10 354 686 30 356 1.07e-22 100
Msa0143950 MtrunA17_Chr8g0380041 25.364 343 173 10 31 326 30 336 3.52e-16 80.9
Msa0143950 MtrunA17_Chr2g0283191 26.216 370 210 15 329 665 13 352 1.21e-22 100
Msa0143950 MtrunA17_Chr2g0285061 26.039 361 220 11 329 669 8 341 2.46e-22 99.4
Msa0143950 MtrunA17_Chr4g0008851 26.330 376 227 14 332 686 13 359 6.82e-22 98.2
Msa0143950 MtrunA17_Chr3g0092131 27.027 370 204 18 333 673 4 336 8.72e-22 97.8
Msa0143950 MtrunA17_Chr1g0182811 28.796 382 216 15 329 686 11 360 9.46e-22 97.8
Msa0143950 MtrunA17_Chr6g0457921 27.513 378 221 15 330 681 3 353 9.91e-22 97.8
Msa0143950 MtrunA17_Chr3g0142941 28.696 345 199 14 339 665 36 351 1.12e-21 97.4
Msa0143950 MtrunA17_Chr8g0371471 27.557 352 196 17 349 673 35 354 1.15e-21 97.4
Msa0143950 MtrunA17_Chr7g0275021 27.714 350 194 14 355 677 34 351 1.96e-21 96.7
Msa0143950 MtrunA17_Chr2g0301551 29.968 317 158 15 401 691 37 315 2.40e-21 95.5
Msa0143950 MtrunA17_Chr2g0301551 26.087 299 136 9 78 330 37 296 7.39e-20 91.3
Msa0143950 MtrunA17_Chr2g0301571 30.094 319 155 16 401 691 37 315 3.39e-21 95.1
Msa0143950 MtrunA17_Chr2g0301571 26.087 299 136 9 78 330 37 296 6.86e-20 91.3
Msa0143950 MtrunA17_Chr3g0086641 26.776 366 211 15 329 669 13 346 5.86e-21 95.5
Msa0143950 MtrunA17_Chr3g0086641 24.863 366 190 10 7 326 17 343 8.93e-17 82.8
Msa0143950 MtrunA17_Chr5g0434621 26.774 310 179 12 387 678 62 341 7.42e-21 94.7
Msa0143950 MtrunA17_Chr5g0434621 25.519 337 177 14 36 330 29 333 5.02e-13 71.2
Msa0143950 MtrunA17_Chr3g0142921 26.608 342 194 13 350 665 31 341 1.57e-20 94.0
Msa0143950 MtrunA17_Chr3g0142921 24.390 369 204 15 7 329 6 345 1.08e-14 76.3
Msa0143950 MtrunA17_Chr4g0027571 29.825 228 124 7 465 673 3 213 1.93e-20 90.9
Msa0143950 MtrunA17_Chr4g0027571 30.588 170 95 5 159 327 60 207 5.87e-11 63.2
Msa0143950 MtrunA17_Chr1g0189931 28.612 353 187 14 355 677 32 349 2.24e-20 93.6
Msa0143950 MtrunA17_Chr3g0077571 26.400 375 227 14 329 686 8 350 3.80e-20 92.8
Msa0143950 MtrunA17_Chr3g0077571 25.706 354 212 11 2 329 6 334 3.62e-18 86.7
Msa0143950 MtrunA17_Chr8g0344931 29.947 374 202 13 331 676 4 345 4.62e-20 92.4
Msa0143950 MtrunA17_Chr8g0344931 27.273 341 168 9 32 330 37 339 1.30e-18 88.2
Msa0143950 MtrunA17_Chr1g0189891 30.508 354 191 17 355 686 29 349 7.02e-20 92.0
Msa0143950 MtrunA17_Chr3g0077581 25.501 349 217 11 354 681 35 361 1.67e-19 90.9
Msa0143950 MtrunA17_Chr3g0104801 42.857 119 60 3 30 140 42 160 4.27e-19 85.5
Msa0143950 MtrunA17_Chr3g0104801 38.583 127 65 5 353 467 42 167 7.19e-15 73.6
Msa0143950 MtrunA17_Chr5g0420811 26.198 313 188 10 326 617 3 293 3.10e-18 87.0
Msa0143950 MtrunA17_Chr5g0420811 25.325 308 173 10 7 277 6 293 2.31e-15 78.2
Msa0143950 MtrunA17_Chr8g0371491 26.331 357 214 13 335 669 16 345 8.35e-18 85.9
Msa0143950 MtrunA17_Chr7g0229581 32.919 161 84 4 527 677 4 150 1.09e-17 80.9
Msa0143950 MtrunA17_Chr5g0437421 24.642 349 208 13 354 676 31 350 1.65e-17 84.7
Msa0143950 MtrunA17_Chr4g0060811 25.333 300 182 11 390 673 67 340 1.79e-17 84.7
Msa0143950 MtrunA17_Chr3g0085231 26.111 360 193 13 354 686 30 343 1.21e-16 82.0
Msa0143950 MtrunA17_Chr4g0017431 25.067 375 231 13 334 686 10 356 1.34e-16 82.0
Msa0143950 MtrunA17_Chr7g0273111 48.780 82 41 1 5 85 8 89 1.46e-16 75.9
Msa0143950 MtrunA17_Chr1g0178931 24.069 349 206 15 347 673 27 338 7.44e-16 79.7
Msa0143950 MtrunA17_Chr7g0266061 25.301 332 204 11 356 673 43 344 1.38e-15 79.0
Msa0143950 MtrunA17_Chr2g0284921 26.036 338 194 12 354 669 33 336 1.64e-15 79.0
Msa0143950 MtrunA17_Chr3g0085881 24.620 329 202 11 354 668 32 328 3.89e-15 77.4
Msa0143950 MtrunA17_Chr8g0370981 25.908 413 225 18 325 677 13 404 6.21e-15 77.4
Msa0143950 MtrunA17_Chr2g0284951 25.485 361 208 14 332 668 7 330 1.63e-14 75.9
Msa0143950 MtrunA17_Chr2g0284991 24.202 376 227 14 331 681 9 351 5.72e-14 74.3
Msa0143950 MtrunA17_Chr1g0198351 24.074 324 208 10 347 660 35 330 6.84e-14 73.9
Msa0143950 MtrunA17_Chr2g0285001 24.384 365 213 15 331 669 9 336 7.67e-14 73.9
Msa0143950 MtrunA17_Chr6g0459921 25.000 248 149 8 445 669 106 339 2.66e-13 72.0
Msa0143950 MtrunA17_Chr6g0455661 25.888 197 122 6 484 669 267 450 1.70e-12 70.1
Msa0143950 MtrunA17_Chr1g0198381 23.653 334 210 12 356 675 3 305 2.40e-12 68.6
Msa0143950 MtrunA17_Chr2g0301561 28.755 233 128 11 400 608 36 254 2.62e-12 67.8
Msa0143950 MtrunA17_Chr8g0370951 23.590 390 221 15 325 676 2 352 4.64e-12 68.2
Msa0143950 MtrunA17_Chr8g0380031 27.004 237 141 9 354 576 83 301 5.47e-12 68.2
Msa0143950 MtrunA17_Chr3g0106911 32.877 146 80 6 381 523 8 138 1.41e-11 64.7
Msa0143950 MtrunA17_Chr5g0440501 24.138 261 150 7 445 684 4 237 3.36e-11 64.3
Msa0143950 MtrunA17_Chr6g0469521 36.634 101 51 3 530 620 31 128 4.15e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0143950 AT3G26430.1 49.867 377 176 3 328 691 4 380 5.92e-128 384
Msa0143950 AT3G26430.1 50.301 332 123 3 28 323 27 352 4.35e-108 333
Msa0143950 AT1G67830.1 50.141 355 156 5 351 692 26 372 2.27e-121 367
Msa0143950 AT1G67830.1 48.961 337 130 3 27 327 25 355 5.25e-109 335
Msa0143950 AT5G14450.1 46.133 375 183 5 333 692 19 389 1.06e-110 340
Msa0143950 AT5G14450.1 45.170 383 164 5 5 351 14 386 2.89e-105 326
Msa0143950 AT3G27950.1 44.828 377 171 10 334 689 10 370 7.81e-90 285
Msa0143950 AT3G27950.1 41.085 387 174 10 4 353 3 372 3.47e-80 260
Msa0143950 AT1G54790.1 41.892 370 193 10 328 681 5 368 3.28e-83 268
Msa0143950 AT1G54790.1 36.757 370 180 9 2 330 1 357 1.26e-65 222
Msa0143950 AT1G54790.3 42.077 366 190 10 332 681 10 369 6.98e-82 265
Msa0143950 AT1G54790.3 40.331 362 161 10 11 330 10 358 5.87e-72 238
Msa0143950 AT4G01130.1 40.160 376 208 6 327 689 9 380 7.38e-82 265
Msa0143950 AT4G01130.1 36.579 380 196 6 8 351 10 380 2.87e-73 242
Msa0143950 AT1G56670.1 40.426 376 193 9 329 691 16 373 2.39e-81 263
Msa0143950 AT1G56670.1 37.105 380 173 13 6 344 10 364 3.52e-60 207
Msa0143950 AT1G09390.1 40.314 382 198 9 322 689 3 368 1.02e-78 256
Msa0143950 AT1G09390.1 38.462 351 154 10 31 344 36 361 4.14e-61 209
Msa0143950 AT1G54790.2 39.241 395 192 11 329 681 6 394 2.40e-77 254
Msa0143950 AT1G54790.2 34.343 396 180 10 2 330 1 383 5.26e-60 207
Msa0143950 AT3G05180.1 40.456 351 188 7 352 686 33 378 4.39e-73 241
Msa0143950 AT3G05180.1 41.739 345 151 8 29 334 33 366 4.03e-69 231
Msa0143950 AT3G62280.1 40.401 349 173 11 354 687 35 363 2.60e-68 228
Msa0143950 AT3G62280.1 36.311 347 151 9 22 327 26 343 1.15e-51 183
Msa0143950 AT4G01130.2 41.414 297 152 8 327 608 9 298 6.07e-63 213
Msa0143950 AT4G01130.2 35.974 303 151 5 8 274 10 305 3.80e-53 186
Msa0143950 AT1G56670.2 40.411 292 152 6 329 608 16 297 1.44e-58 200
Msa0143950 AT1G56670.2 36.333 300 138 8 8 268 12 297 8.65e-44 159
Msa0143950 AT4G01130.3 37.627 295 170 5 408 689 1 294 2.04e-55 191
Msa0143950 AT4G01130.3 32.343 303 160 6 85 351 1 294 1.42e-43 159
Msa0143950 AT1G28600.1 35.616 365 190 11 352 691 28 372 4.90e-55 193
Msa0143950 AT1G28600.1 33.509 379 177 12 1 330 1 353 2.30e-45 167
Msa0143950 AT1G28580.1 33.763 388 209 11 331 689 9 377 1.78e-53 189
Msa0143950 AT1G28580.1 30.081 369 187 8 10 330 15 360 2.51e-40 152
Msa0143950 AT1G28650.1 34.908 381 203 11 330 682 9 372 2.53e-53 189
Msa0143950 AT1G28650.1 33.154 371 179 9 7 330 12 360 5.26e-47 171
Msa0143950 AT1G31550.2 33.702 362 197 9 352 689 33 375 2.69e-49 178
Msa0143950 AT1G31550.2 34.167 360 162 10 21 330 24 358 2.41e-47 172
Msa0143950 AT1G28640.1 32.391 389 212 9 325 682 2 370 4.32e-49 177
Msa0143950 AT1G28640.1 31.830 377 185 8 7 334 9 362 5.65e-46 168
Msa0143950 AT1G28670.1 33.592 387 211 11 325 682 2 371 1.49e-48 175
Msa0143950 AT1G28670.1 31.452 372 186 9 7 330 9 359 2.31e-43 161
Msa0143950 AT5G45910.1 35.000 360 187 12 353 682 28 370 3.76e-48 174
Msa0143950 AT5G45910.1 34.286 385 167 14 1 330 5 358 6.91e-44 162
Msa0143950 AT3G62280.2 39.636 275 140 8 354 614 35 297 4.84e-48 171
Msa0143950 AT3G62280.2 35.495 293 127 7 22 273 26 297 3.54e-38 144
Msa0143950 AT1G28590.1 32.124 386 218 9 329 689 10 376 8.16e-47 171
Msa0143950 AT1G28590.1 32.703 370 175 11 10 330 15 359 6.66e-44 163
Msa0143950 AT1G28610.2 32.804 378 211 11 330 682 6 365 1.16e-45 167
Msa0143950 AT1G28610.2 31.551 374 182 11 5 330 6 353 1.91e-40 153
Msa0143950 AT1G31550.1 32.687 361 199 9 352 689 33 372 1.34e-45 167
Msa0143950 AT1G31550.1 33.148 359 164 10 21 330 24 355 6.13e-44 163
Msa0143950 AT2G27360.1 31.362 389 219 12 328 689 7 374 8.14e-44 162
Msa0143950 AT2G27360.1 31.720 372 182 9 7 330 10 357 3.91e-42 158
Msa0143950 AT1G28570.1 30.357 392 227 11 325 689 2 374 1.83e-43 161
Msa0143950 AT1G28570.1 29.947 374 187 9 7 330 9 357 1.83e-40 153
Msa0143950 AT1G28660.2 31.959 388 214 12 325 682 2 369 1.99e-43 161
Msa0143950 AT1G28660.2 30.000 370 192 10 7 330 9 357 2.13e-39 150
Msa0143950 AT1G28660.1 32.391 389 212 13 325 682 2 370 7.05e-43 159
Msa0143950 AT1G28660.1 29.919 371 192 10 7 330 9 358 3.11e-40 152
Msa0143950 AT3G48460.1 29.379 354 204 8 353 681 36 368 6.22e-38 145
Msa0143950 AT3G48460.1 29.834 362 207 8 6 334 14 361 1.02e-33 133
Msa0143950 AT1G28580.2 31.190 311 176 9 398 689 5 296 1.69e-37 142
Msa0143950 AT1G28580.2 26.174 298 155 6 75 330 5 279 1.37e-21 96.7
Msa0143950 AT3G16370.1 29.586 338 190 12 354 669 29 340 9.13e-29 118
Msa0143950 AT3G16370.1 27.545 334 187 12 31 330 29 341 2.95e-23 102
Msa0143950 AT5G40990.1 29.032 372 225 13 326 676 4 357 1.36e-27 115
Msa0143950 AT5G40990.1 25.067 371 212 11 1 330 6 351 5.21e-21 95.9
Msa0143950 AT5G22810.1 28.736 348 190 13 354 673 33 350 2.62e-27 114
Msa0143950 AT5G22810.1 29.042 334 184 13 31 330 33 347 2.02e-22 100
Msa0143950 AT5G03820.1 28.116 345 195 13 354 673 32 348 2.78e-27 114
Msa0143950 AT5G03820.1 27.879 330 186 11 31 327 32 342 3.84e-24 105
Msa0143950 AT2G23540.1 27.966 354 193 13 355 676 48 371 5.50e-27 114
Msa0143950 AT2G23540.1 26.330 376 185 16 9 326 20 361 2.03e-16 82.4
Msa0143950 AT5G03820.2 27.083 384 219 15 319 673 25 376 5.86e-27 114
Msa0143950 AT5G03820.2 27.879 330 186 11 31 327 60 370 1.13e-23 104
Msa0143950 AT1G75900.1 28.152 341 191 13 353 669 41 351 6.14e-27 113
Msa0143950 AT4G10950.2 27.684 354 209 13 354 686 70 397 1.04e-26 113
Msa0143950 AT4G10950.2 26.176 340 175 14 31 326 70 377 2.00e-19 91.7
Msa0143950 AT5G42170.1 28.863 343 198 12 350 673 45 360 3.12e-26 111
Msa0143950 AT1G59406.1 28.177 362 214 13 331 673 6 340 7.72e-26 110
Msa0143950 AT1G59030.1 28.177 362 214 13 331 673 6 340 7.72e-26 110
Msa0143950 AT1G58725.1 28.177 362 214 13 331 673 6 340 7.72e-26 110
Msa0143950 AT1G53920.1 28.152 341 204 10 341 663 34 351 1.25e-25 110
Msa0143950 AT1G53920.1 25.000 364 202 10 4 323 15 351 5.26e-23 102
Msa0143950 AT5G45670.1 26.593 361 221 11 328 669 3 338 1.65e-25 109
Msa0143950 AT1G71120.1 28.022 364 194 11 342 676 18 342 1.94e-25 108
Msa0143950 AT1G71120.1 25.068 367 178 12 11 330 20 336 1.18e-20 94.7
Msa0143950 AT2G42990.1 28.108 370 210 15 329 672 1 340 1.00e-24 106
Msa0143950 AT2G42990.1 25.070 359 199 13 12 330 10 338 4.24e-19 90.1
Msa0143950 AT5G03810.1 25.862 348 198 13 354 673 29 344 1.05e-24 106
Msa0143950 AT5G03810.1 27.108 332 193 12 27 327 25 338 3.77e-21 96.3
Msa0143950 AT3G14225.1 30.117 342 202 13 355 676 37 361 1.62e-24 106
Msa0143950 AT3G14225.1 25.067 371 212 11 14 344 19 363 4.31e-15 78.2
Msa0143950 AT3G14225.2 30.499 341 198 13 355 676 37 357 1.74e-24 106
Msa0143950 AT3G14225.2 25.067 371 208 9 14 344 19 359 3.64e-15 78.2
Msa0143950 AT3G50400.1 28.125 352 200 14 353 676 32 358 2.15e-24 106
Msa0143950 AT4G10950.1 27.401 354 206 14 354 686 70 393 3.37e-24 105
Msa0143950 AT4G10950.1 25.882 340 172 15 31 326 70 373 5.75e-17 84.0
Msa0143950 AT4G26790.1 26.393 341 206 13 353 673 27 342 3.92e-24 105
Msa0143950 AT4G26790.1 24.850 334 183 11 30 323 27 332 8.02e-18 86.3
Msa0143950 AT4G26790.2 26.393 341 206 13 353 673 27 342 3.92e-24 105
Msa0143950 AT4G26790.2 24.850 334 183 11 30 323 27 332 8.02e-18 86.3
Msa0143950 AT5G63170.1 28.732 355 198 12 330 665 3 321 4.03e-24 104
Msa0143950 AT1G28600.2 35.586 222 114 8 1 211 1 204 5.96e-24 101
Msa0143950 AT1G28600.2 35.829 187 100 5 352 528 28 204 1.92e-21 94.0
Msa0143950 AT5G08460.1 27.346 373 219 14 333 680 28 373 6.39e-24 105
Msa0143950 AT5G08460.1 25.895 363 189 12 9 324 28 357 2.71e-19 90.9
Msa0143950 AT1G20120.1 30.194 361 194 17 348 680 71 401 8.31e-24 104
Msa0143950 AT3G04290.1 29.060 351 188 13 355 677 29 346 9.15e-24 103
Msa0143950 AT1G53940.2 30.398 352 203 14 355 686 39 368 1.01e-23 104
Msa0143950 AT2G04570.1 26.110 383 207 15 330 678 6 346 9.73e-23 100
Msa0143950 AT5G15720.1 26.190 336 205 10 354 669 29 341 1.01e-22 100
Msa0143950 AT5G15720.1 24.198 343 182 11 31 327 29 339 5.66e-17 83.6
Msa0143950 AT2G31540.1 25.641 390 223 16 324 683 2 354 1.69e-22 100
Msa0143950 AT5G45960.1 29.553 291 166 13 355 620 47 323 1.80e-22 100
Msa0143950 AT2G30310.1 26.393 341 204 11 347 665 26 341 2.14e-22 100
Msa0143950 AT1G29670.1 25.281 356 220 12 334 669 10 339 2.22e-22 100
Msa0143950 AT5G45950.1 26.254 339 197 13 355 672 40 346 2.51e-22 99.8
Msa0143950 AT3G43570.1 25.915 355 207 12 329 673 3 311 4.39e-22 98.2
Msa0143950 AT5G37690.1 27.869 305 172 13 387 673 64 338 4.40e-22 99.0
Msa0143950 AT3G53100.1 26.361 349 206 13 348 673 22 342 4.45e-22 99.0
Msa0143950 AT3G53100.1 27.171 357 204 16 7 330 6 339 1.60e-15 79.3
Msa0143950 AT1G06990.1 25.074 339 206 13 353 669 35 347 5.00e-22 99.0
Msa0143950 AT1G06990.1 25.068 367 220 12 1 331 2 349 6.04e-21 95.5
Msa0143950 AT1G58430.1 27.645 293 171 10 353 620 33 309 9.40e-22 98.2
Msa0143950 AT1G29670.2 25.137 366 229 11 323 669 68 407 1.06e-21 99.0
Msa0143950 AT1G20130.2 27.507 349 199 14 349 669 178 500 1.10e-21 99.8
Msa0143950 AT1G20130.1 27.507 349 199 14 349 669 198 520 1.18e-21 99.8
Msa0143950 AT2G30220.1 26.966 356 201 15 353 683 31 352 1.94e-21 97.1
Msa0143950 AT4G18970.1 25.672 335 206 10 354 669 27 337 2.13e-21 97.1
Msa0143950 AT4G18970.2 25.672 335 206 10 354 669 27 337 3.71e-21 97.1
Msa0143950 AT2G24560.1 26.954 371 211 15 324 665 2 341 3.95e-21 96.3
Msa0143950 AT1G28610.1 33.641 217 116 7 5 211 6 204 4.41e-21 93.6
Msa0143950 AT1G28610.1 34.239 184 101 5 348 521 24 197 5.74e-19 87.4
Msa0143950 AT5G18430.1 28.571 343 200 12 355 676 28 346 5.15e-21 95.9
Msa0143950 AT1G75890.3 26.087 391 230 15 308 669 26 386 9.76e-21 95.5
Msa0143950 AT1G54030.1 28.669 293 154 9 387 666 87 337 1.02e-20 95.9
Msa0143950 AT1G54030.1 24.214 318 182 11 33 325 53 336 1.81e-13 73.6
Msa0143950 AT1G75880.2 27.174 368 212 15 334 673 26 365 1.26e-20 94.7
Msa0143950 AT5G03610.1 26.140 329 202 12 356 670 44 345 1.53e-20 94.4
Msa0143950 AT1G75880.1 27.100 369 212 16 334 673 26 366 1.91e-20 94.4
Msa0143950 AT1G33811.1 26.113 337 207 12 354 669 33 348 2.54e-20 94.0
Msa0143950 AT1G33811.1 24.927 341 207 10 19 326 21 345 6.31e-13 71.2
Msa0143950 AT1G75890.2 27.177 379 216 16 320 669 10 357 2.60e-20 94.0
Msa0143950 AT1G54020.2 27.151 372 211 15 334 686 12 342 3.62e-20 93.6
Msa0143950 AT1G54020.2 25.419 358 195 11 5 327 4 324 4.33e-16 81.3
Msa0143950 AT1G58520.3 27.859 341 197 14 350 673 25 333 3.96e-20 92.8
Msa0143950 AT1G58525.1 27.859 341 197 14 350 673 25 333 3.96e-20 92.8
Msa0143950 AT5G33370.1 28.035 346 198 14 355 677 30 347 5.29e-20 92.8
Msa0143950 AT1G53990.1 27.882 373 211 15 331 676 7 348 6.74e-20 92.4
Msa0143950 AT1G71691.2 26.243 362 210 14 343 679 41 370 8.17e-20 92.4
Msa0143950 AT1G71691.2 25.305 328 197 9 31 330 54 361 3.15e-15 78.6
Msa0143950 AT1G73610.1 28.280 343 190 15 350 673 30 335 8.23e-20 92.0
Msa0143950 AT1G20135.1 25.737 373 205 13 323 670 2 327 8.57e-20 91.7
Msa0143950 AT1G20132.1 26.023 342 196 13 354 669 60 370 1.86e-19 91.7
Msa0143950 AT1G28570.3 28.436 211 126 7 494 689 11 211 2.04e-19 88.2
Msa0143950 AT1G28570.3 26.562 192 95 4 177 330 11 194 2.27e-14 73.6
Msa0143950 AT1G28570.2 25.085 295 186 11 412 689 26 302 2.43e-19 90.1
Msa0143950 AT1G28570.2 26.562 192 95 4 177 330 102 285 3.92e-14 74.3
Msa0143950 AT1G28570.2 51.250 80 31 2 7 79 9 87 4.21e-14 74.3
Msa0143950 AT2G40250.1 27.336 289 175 12 355 620 36 312 2.69e-19 90.9
Msa0143950 AT1G75890.1 27.551 392 211 17 320 669 10 370 4.66e-19 90.1
Msa0143950 AT5G03980.1 28.796 191 110 5 494 669 127 306 7.86e-19 88.6
Msa0143950 AT5G03980.1 23.856 306 172 10 74 330 14 307 5.20e-15 77.0
Msa0143950 AT1G54000.1 26.273 373 224 15 331 686 12 350 9.88e-19 89.4
Msa0143950 AT3G43550.1 28.667 300 178 12 329 608 3 286 1.06e-18 87.4
Msa0143950 AT1G54010.1 26.738 374 221 14 331 686 12 350 1.32e-18 89.0
Msa0143950 AT1G74460.1 28.443 334 192 16 357 669 25 332 1.74e-18 88.2
Msa0143950 AT1G29660.1 25.137 366 228 13 323 669 2 340 2.22e-18 87.8
Msa0143950 AT1G75930.1 27.148 291 180 8 347 617 21 299 3.87e-18 87.0
Msa0143950 AT1G23500.1 29.474 285 161 10 355 617 35 301 4.30e-18 86.7
Msa0143950 AT3G14820.1 25.449 334 212 12 354 673 31 341 9.46e-18 85.9
Msa0143950 AT3G14820.1 28.904 301 172 13 9 280 12 299 7.60e-17 83.2
Msa0143950 AT1G71250.1 23.947 380 224 12 333 680 15 361 1.37e-17 85.9
Msa0143950 AT2G03980.2 27.114 343 187 17 352 666 40 347 1.80e-17 85.1
Msa0143950 AT2G03980.3 27.114 343 187 17 352 666 40 347 1.80e-17 85.1
Msa0143950 AT2G03980.1 27.114 343 187 17 352 666 40 347 1.80e-17 85.1
Msa0143950 AT2G03980.4 27.114 343 187 17 352 666 40 347 1.80e-17 85.1
Msa0143950 AT2G04020.1 31.280 211 127 8 352 555 40 239 1.84e-17 83.2
Msa0143950 AT2G19010.1 25.429 350 200 13 354 681 29 339 2.73e-17 84.3
Msa0143950 AT2G24560.2 27.532 316 181 13 324 610 2 298 2.92e-17 84.0
Msa0143950 AT2G04020.2 31.280 211 127 8 352 555 40 239 3.74e-17 83.6
Msa0143950 AT5G37690.2 26.557 305 168 14 387 673 64 330 3.94e-17 84.0
Msa0143950 AT2G19010.2 25.429 350 200 13 354 681 59 369 5.30e-17 84.0
Msa0143950 AT5G55050.1 29.805 359 188 17 349 675 33 359 6.47e-17 83.6
Msa0143950 AT3G14220.1 24.138 377 219 16 326 676 2 337 6.72e-17 83.6
Msa0143950 AT2G19060.1 26.197 355 193 13 354 681 29 341 8.45e-17 82.8
Msa0143950 AT1G75910.1 26.621 293 174 11 350 617 23 299 1.15e-16 82.4
Msa0143950 AT1G75910.1 22.740 365 197 13 11 330 7 331 3.09e-12 68.9
Msa0143950 AT1G53940.1 31.387 274 153 11 355 608 39 297 2.97e-16 80.5
Msa0143950 AT5G15720.3 24.183 306 187 9 381 669 33 310 3.10e-16 80.9
Msa0143950 AT1G71691.3 27.148 291 167 12 343 608 41 311 4.90e-16 80.1
Msa0143950 AT1G71691.3 24.910 277 172 7 20 268 43 311 3.93e-12 68.2
Msa0143950 AT5G15720.2 25.818 275 173 8 354 608 29 292 7.80e-16 79.7
Msa0143950 AT5G15720.2 23.549 293 158 9 22 268 20 292 7.45e-13 70.5
Msa0143950 AT4G30140.1 27.011 348 195 14 354 681 32 340 7.05e-15 77.0
Msa0143950 AT3G09930.2 24.242 330 208 13 356 670 40 342 1.08e-14 76.6
Msa0143950 AT3G09930.1 24.242 330 208 13 356 670 40 342 1.08e-14 76.6
Msa0143950 AT5G41890.1 24.290 317 187 14 387 676 69 359 1.17e-14 76.6
Msa0143950 AT4G16230.1 29.699 266 141 13 331 573 4 246 1.21e-14 74.7
Msa0143950 AT5G03600.1 24.702 336 194 13 354 670 13 308 2.00e-14 75.5
Msa0143950 AT5G03600.2 24.702 336 194 13 354 670 48 343 2.68e-14 75.5
Msa0143950 AT1G75920.2 26.059 307 191 13 334 617 6 299 4.47e-14 74.7
Msa0143950 AT1G71691.1 23.920 301 177 12 399 679 1 269 6.90e-13 70.1
Msa0143950 AT2G31550.1 26.163 172 103 6 519 678 58 217 2.37e-12 67.4
Msa0143950 AT1G54030.2 28.780 205 111 6 387 583 87 264 3.25e-12 68.6
Msa0143950 AT5G33370.2 30.000 220 117 10 355 555 30 231 1.08e-11 67.4
Msa0143950 AT1G54020.1 25.000 296 167 12 406 686 1 256 1.25e-11 66.6
Msa0143950 AT1G54020.5 25.000 296 167 12 406 686 1 256 1.25e-11 66.6
Msa0143950 AT1G54020.3 25.000 296 167 12 406 686 1 256 1.25e-11 66.6
Msa0143950 AT3G14210.1 24.425 348 199 14 345 667 26 334 1.89e-11 67.0

Find 145 sgRNAs with CRISPR-Local

Find 555 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTCTTTGTAGCAAATAT+TGG 0.178924 1_4:-3208108 None:intergenic
TATAAAATTCTTTACTATAT+CGG 0.214825 1_4:-3210895 None:intergenic
ACCAATATCAAATGTGTATA+AGG 0.220968 1_4:-3210808 None:intergenic
TACTGAATTTGAAGGGAAAA+TGG 0.224045 1_4:-3210562 None:intergenic
TGGATGTGTGCCTTTAATTT+TGG 0.224209 1_4:+3211151 Msa0143950:CDS
AACCATCTACTAGAATAATA+TGG 0.227325 1_4:+3211616 Msa0143950:CDS
CTTTATAGCATATGGAAAAT+TGG 0.228348 1_4:-3211174 None:intergenic
GGAAAATTGGCCAAAATTAA+AGG 0.238264 1_4:-3211161 None:intergenic
AGCGCATATCTTGATTCTTT+GGG 0.238639 1_4:+3203852 Msa0143950:CDS
TGTCTAATGAATTGTGTTCT+AGG 0.252829 1_4:-3204008 None:intergenic
TTTGGAATAATAATCTTCTT+TGG 0.255011 1_4:-3210784 None:intergenic
AAGCGCATATCTTGATTCTT+TGG 0.258296 1_4:+3203851 Msa0143950:CDS
AATTAGGGGCCAGGTCATTT+TGG 0.264269 1_4:+3211108 Msa0143950:CDS
CCATTGGGTATAATACTATT+AGG 0.269389 1_4:-3210529 None:intergenic
GTAATTTCAGCTCAAAGTTT+TGG 0.272793 1_4:+3203816 Msa0143950:intron
ATCTAGAATATATACAAATT+AGG 0.275565 1_4:+3211092 Msa0143950:intron
TTCCCTGCAATCTTCAACTT+TGG 0.275888 1_4:+3202672 Msa0143950:CDS
AATTCTTTGTAGCAAATATT+GGG 0.277876 1_4:-3208107 None:intergenic
TCTAGAATATATACAAATTA+GGG 0.278589 1_4:+3211093 Msa0143950:intron
TTCTTTATATTAGACATATA+TGG 0.280042 1_4:+3211819 Msa0143950:three_prime_UTR
TTGGAATAATAATCTTCTTT+GGG 0.286703 1_4:-3210783 None:intergenic
TCCCATATTATTCTAGTAGA+TGG 0.294746 1_4:-3211618 None:intergenic
ATCCTTCCATTCCACTAAAT+AGG 0.295141 1_4:+3211709 Msa0143950:CDS
CGAATCATTCTTGATTTCAT+AGG 0.296923 1_4:+3208264 Msa0143950:CDS
GCCTTATACACATTTGATAT+TGG 0.309552 1_4:+3210807 Msa0143950:CDS
TTGAGTACCATTGACCTCTA+TGG 0.311057 1_4:-3205252 None:intergenic
TGGCTATCCTTTATAGCATA+TGG 0.325290 1_4:-3211182 None:intergenic
GGAGAAATCATAAACATAAA+TGG 0.328429 1_4:+3211564 Msa0143950:CDS
ACTTATTTCCACAGACCTAA+TGG 0.339588 1_4:+3202762 Msa0143950:CDS
GCTTTGTACACATTTGATAT+TGG 0.345019 1_4:+3204168 Msa0143950:CDS
CAAGGAAGAGTATTTCTCTA+AGG 0.350686 1_4:+3204146 Msa0143950:CDS
ATAAAATTCTTTACTATATC+GGG 0.350692 1_4:-3210894 None:intergenic
TTGTAACATGCCCTATTTAG+TGG 0.352126 1_4:-3211720 None:intergenic
GTCTTTGATCAAATCTCTAC+TGG 0.362400 1_4:+3211675 Msa0143950:CDS
GACCATCTGCAAGAGTGAAT+TGG 0.365145 1_4:+3205297 Msa0143950:CDS
TTAGCTGAAAAGGATGAAAA+TGG 0.366007 1_4:+3204897 Msa0143950:intron
ATCAAATGTGTATAAGGCTT+TGG 0.373582 1_4:-3210802 None:intergenic
CGTCTAATTGTCGATTTCAT+TGG 0.373711 1_4:+3202801 Msa0143950:CDS
TCCTTCCATTCCACTAAATA+GGG 0.381991 1_4:+3211710 Msa0143950:CDS
TCACCAAAGTTGAAGATTGC+AGG 0.385266 1_4:-3202675 None:intergenic
CTAGTTGTTTGTTGTGGCTA+TGG 0.395855 1_4:+3205188 Msa0143950:CDS
AAATGCTGATACTGGTGGTT+TGG 0.396433 1_4:+3208164 Msa0143950:CDS
GCACCAAAGTTAAATATTGC+AGG 0.407053 1_4:-3208138 None:intergenic
GAGAAACTATTGATTATCTC+TGG 0.411103 1_4:-3204255 None:intergenic
CTTAGAGAAATACTCTTCCT+TGG 0.412709 1_4:-3204145 None:intergenic
GACATGGTTTACTTTGTAAG+AGG 0.416752 1_4:+3204102 Msa0143950:intron
CTTATTTCCACAGACCTAAT+GGG 0.420130 1_4:+3202763 Msa0143950:CDS
GGTGCTTCAAATGCTGATAC+TGG 0.421451 1_4:+3208156 Msa0143950:CDS
AATCTCTGAATTGAGTGTAT+TGG 0.422061 1_4:-3203980 None:intergenic
CCATCAGAGTACCTCCCATT+AGG 0.423139 1_4:-3202777 None:intergenic
GATATTGGTCAAAATGATCT+TGG 0.426312 1_4:+3204183 Msa0143950:CDS
ACCATCTGCAAGAGTGAATT+GGG 0.426866 1_4:+3205298 Msa0143950:CDS
ATACACAACACTGGACCAAT+TGG 0.429145 1_4:+3211131 Msa0143950:CDS
GCAAAATTCATTAGAGATCA+AGG 0.430565 1_4:+3210613 Msa0143950:CDS
ATTAAGATATGGACTTAGGT+AGG 0.436390 1_4:-3210443 None:intergenic
TTTCCTGCAATATTTAACTT+TGG 0.440023 1_4:+3208135 Msa0143950:CDS
ACCATCTACTAGAATAATAT+GGG 0.442115 1_4:+3211617 Msa0143950:CDS
GATCCTAGAGAATTAAGATA+TGG 0.444570 1_4:-3210454 None:intergenic
CAAGCACTTCAGTTGCCAAA+TGG 0.446432 1_4:+3208198 Msa0143950:CDS
TCAAGATATGCGCTTAGATA+AGG 0.460946 1_4:-3203843 None:intergenic
TTAGAGAAATACTCTTCCTT+GGG 0.465277 1_4:-3204144 None:intergenic
CCCACCTAGTATTATACCTC+AGG 0.465429 1_4:+3203929 Msa0143950:CDS
GGTCAAAATGATCTTACTGC+TGG 0.468242 1_4:+3210828 Msa0143950:CDS
AAACTCAGACACTGGTGGCT+TGG 0.473491 1_4:+3202701 Msa0143950:CDS
CCACCCTGAGGTATAATACT+AGG 0.476832 1_4:-3203933 None:intergenic
CAAGATATGCGCTTAGATAA+GGG 0.482225 1_4:-3203842 None:intergenic
GTCTCTCCATATGGTGGCGT+TGG 0.483501 1_4:-3202741 None:intergenic
AGTCCATATCTTAATTCTCT+AGG 0.487332 1_4:+3210451 Msa0143950:CDS
AAATGGACTAAACATTCCAT+TGG 0.487410 1_4:-3210545 None:intergenic
ATTAAAGGCACACATCCAAT+TGG 0.488389 1_4:-3211146 None:intergenic
GAGAATTAAGATATGGACTT+AGG 0.490134 1_4:-3210447 None:intergenic
TGGAAATAAGTCTCTCCATA+TGG 0.492180 1_4:-3202750 None:intergenic
CTATGAAATCAAGAATGATT+CGG 0.493581 1_4:-3208263 None:intergenic
AAATGGTACAAACATTGTTG+TGG 0.497281 1_4:+3211581 Msa0143950:CDS
GGTGCAAACTTTGCAACAGC+AGG 0.502492 1_4:+3210490 Msa0143950:CDS
TGTATTGCTTTGCACAACCT+TGG 0.503056 1_4:-3211202 None:intergenic
AATGGTACAAACATTGTTGT+GGG 0.503607 1_4:+3211582 Msa0143950:CDS
ACATATGTGATTGCAGCTAA+AGG 0.510042 1_4:-3205002 None:intergenic
TGGCAACTGAAGTGCTTGAA+AGG 0.511071 1_4:-3208193 None:intergenic
ATTGATTGTACTGAATTTGA+AGG 0.512446 1_4:-3210570 None:intergenic
GGTCAAAATGATCTTGGTGC+TGG 0.513823 1_4:+3204189 Msa0143950:CDS
CAAGCACCAACGCCACCATA+TGG 0.515260 1_4:+3202735 Msa0143950:CDS
GATCCACACGAAGTTGAGCT+AGG 0.516606 1_4:-3211265 None:intergenic
ATATATACAAATTAGGGGCC+AGG 0.517339 1_4:+3211099 Msa0143950:CDS
CATGTGGCATGTTGTGGCTA+TGG 0.526634 1_4:+3211507 Msa0143950:CDS
ACATGCCCTATTTAGTGGAA+TGG 0.526856 1_4:-3211715 None:intergenic
TATAATTATAGCAATAGTGT+TGG 0.527004 1_4:+3205218 Msa0143950:CDS
AATGGACTAAACATTCCATT+GGG 0.529064 1_4:-3210544 None:intergenic
CATCACCTAGTTGTTTGTTG+TGG 0.531642 1_4:+3205182 Msa0143950:CDS
ATGGTGGCGTTGGTGCTTGA+AGG 0.535800 1_4:-3202731 None:intergenic
ATATTTCAATCATAAGTTGA+AGG 0.539994 1_4:+3204950 Msa0143950:CDS
ATTCTTTGTAGCAAATATTG+GGG 0.543366 1_4:-3208106 None:intergenic
TATTGGACATCAAGGTAGAA+AGG 0.543537 1_4:-3203963 None:intergenic
TTAAGATATGGACTTAGGTA+GGG 0.544125 1_4:-3210442 None:intergenic
TATAGCAATAGTGTTGGATG+TGG 0.553912 1_4:+3205224 Msa0143950:CDS
TGGAATAATAATCTTCTTTG+GGG 0.555591 1_4:-3210782 None:intergenic
AGCAATAGTGTTGGATGTGG+AGG 0.556583 1_4:+3205227 Msa0143950:CDS
ACATATGTGATTGCAGCTAG+TGG 0.560723 1_4:-3211290 None:intergenic
CATAGCCACAACAAACAACT+AGG 0.561004 1_4:-3205187 None:intergenic
TCCCAATTCACTCTTGCAGA+TGG 0.561326 1_4:-3205299 None:intergenic
GCCCTATTTAGTGGAATGGA+AGG 0.562414 1_4:-3211711 None:intergenic
GGTGACTCAAACTCAGACAC+TGG 0.562687 1_4:+3202693 Msa0143950:CDS
GCGCATATCTTGATTCTTTG+GGG 0.564900 1_4:+3203853 Msa0143950:CDS
TTGATTGTACTGAATTTGAA+GGG 0.569678 1_4:-3210569 None:intergenic
GTTGTTTGTTGTGGCTATGG+AGG 0.573272 1_4:+3205191 Msa0143950:CDS
CACCAAAGTTGAAGATTGCA+GGG 0.576163 1_4:-3202674 None:intergenic
CCTAATAGTATTATACCCAA+TGG 0.577765 1_4:+3210529 Msa0143950:CDS
ATTGAGTGTATTGGACATCA+AGG 0.579239 1_4:-3203971 None:intergenic
AGCCCTAGCTCAACTTCGTG+TGG 0.589422 1_4:+3211262 Msa0143950:CDS
CTACCACATGTGGCATGTTG+TGG 0.589804 1_4:+3211501 Msa0143950:CDS
TATAACATTCGTGCTAGATG+TGG 0.594579 1_4:+3211543 Msa0143950:CDS
CCTGAGGTATAATACTAGGT+GGG 0.598100 1_4:-3203929 None:intergenic
GCTTCAAATGCTGATACTGG+TGG 0.598979 1_4:+3208159 Msa0143950:CDS
ATTTGCAAGCTTGATGCCCA+AGG 0.600463 1_4:+3204128 Msa0143950:CDS
AAAATAACTGTGTTAAATCG+TGG 0.600847 1_4:+3211780 Msa0143950:three_prime_UTR
TCTGCAAGAGTGAATTGGGA+TGG 0.604576 1_4:+3205302 Msa0143950:CDS
CAATGAAATCGACAATTAGA+CGG 0.606252 1_4:-3202800 None:intergenic
ATCCACACGAAGTTGAGCTA+GGG 0.606515 1_4:-3211264 None:intergenic
CCCTGAGGTATAATACTAGG+TGG 0.606983 1_4:-3203930 None:intergenic
GGAGGAACCATAGAGGTCAA+TGG 0.609556 1_4:+3205245 Msa0143950:CDS
CTAGGATCAAACTTCACACA+TGG 0.612367 1_4:+3210469 Msa0143950:CDS
CTGAGGTATAATACTAGGTG+GGG 0.612955 1_4:-3203928 None:intergenic
AGTACCTCCCATTAGGTCTG+TGG 0.617351 1_4:-3202770 None:intergenic
TGGTGGCGTTGGTGCTTGAA+GGG 0.619536 1_4:-3202730 None:intergenic
GTGCAAACTTTGCAACAGCA+GGG 0.631688 1_4:+3210491 Msa0143950:CDS
CCACCTAGTATTATACCTCA+GGG 0.636374 1_4:+3203930 Msa0143950:CDS
TCTACTAGAATAATATGGGA+TGG 0.641361 1_4:+3211621 Msa0143950:CDS
TTCTTTGTAGCAAATATTGG+GGG 0.645637 1_4:-3208105 None:intergenic
CCTAATGGGAGGTACTCTGA+TGG 0.649182 1_4:+3202777 Msa0143950:CDS
AGGATTTGAGCTACCACATG+TGG 0.650013 1_4:+3211491 Msa0143950:intron
GTGGCATGTTGTGGCTATGG+AGG 0.654822 1_4:+3211510 Msa0143950:CDS
GACTCAAACTCAGACACTGG+TGG 0.655403 1_4:+3202696 Msa0143950:CDS
TGAGGTATAATACTAGGTGG+GGG 0.657709 1_4:-3203927 None:intergenic
TAGCCACAACATGCCACATG+TGG 0.671628 1_4:-3211504 None:intergenic
AAATAAGTCTCTCCATATGG+TGG 0.673013 1_4:-3202747 None:intergenic
ACACAATTCATTAGACAACA+AGG 0.676208 1_4:+3204014 Msa0143950:CDS
TATGCTATAAAGGATAGCCA+AGG 0.679315 1_4:+3211185 Msa0143950:CDS
ATTTCCACAGACCTAATGGG+AGG 0.690874 1_4:+3202766 Msa0143950:CDS
CTAGAATATATACAAATTAG+GGG 0.698873 1_4:+3211094 Msa0143950:intron
CCTAGTATTATACCTCAGGG+TGG 0.705655 1_4:+3203933 Msa0143950:CDS
TGGATGTGGAGGAACCATAG+AGG 0.718015 1_4:+3205238 Msa0143950:CDS
GTTGTGTATCCAAAATGACC+TGG 0.720607 1_4:-3211117 None:intergenic
ATTGCTACTTTCAATCACTG+TGG 0.728286 1_4:-3202637 None:intergenic
AAAGGACTGTATCCACCCTG+AGG 0.752311 1_4:-3203945 None:intergenic
GGATGGTACACATTACACAG+AGG 0.801423 1_4:+3211638 Msa0143950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAAATAATTTTTTAATT+GGG - chr1_4:3207301-3207320 None:intergenic 0.0%
!!! TTAAAAAATAATTTTTTAAT+TGG - chr1_4:3207302-3207321 None:intergenic 0.0%
!!! ATTTTTTATAAAAAATAATA+AGG - chr1_4:3209504-3209523 None:intergenic 0.0%
!!! GTGTAATATATTTTTTTTTT+TGG + chr1_4:3202949-3202968 Msa0143950:intron 10.0%
!!! TATATTTTTTTTTTTGGTAA+TGG + chr1_4:3202955-3202974 Msa0143950:intron 10.0%
!!! ATTAATATTCACATATTTTT+AGG + chr1_4:3204062-3204081 Msa0143950:intron 10.0%
!!! ATTTGATTTGTTTATATAAT+AGG - chr1_4:3204617-3204636 None:intergenic 10.0%
!!! ATTCTTCTATATATATTTTA+TGG - chr1_4:3206709-3206728 None:intergenic 10.0%
!! ATTGATTAAAATAGAAAATA+GGG - chr1_4:3206977-3206996 None:intergenic 10.0%
!! AATTGATTAAAATAGAAAAT+AGG - chr1_4:3206978-3206997 None:intergenic 10.0%
!!! AATAATAATTCGTTTTTTTA+TGG + chr1_4:3207160-3207179 Msa0143950:intron 10.0%
!!! ATTCAAAAAAAATATTTTAC+AGG + chr1_4:3207227-3207246 Msa0143950:intron 10.0%
!!! TTCAAAAAAAATATTTTACA+GGG + chr1_4:3207228-3207247 Msa0143950:intron 10.0%
!!! ATTATTATTTTTGTATAGTT+TGG - chr1_4:3207661-3207680 None:intergenic 10.0%
!!! TTTTTTTTTATTCTTTTTTG+AGG - chr1_4:3208488-3208507 None:intergenic 10.0%
!!! TATAAGAGTATTAATTAATT+CGG + chr1_4:3209329-3209348 Msa0143950:intron 10.0%
!!! ATGATTTTGTATTTTTTTTT+TGG + chr1_4:3209961-3209980 Msa0143950:intron 10.0%
!!! ATCATTATTTTATTTTTTTG+AGG + chr1_4:3210022-3210041 Msa0143950:intron 10.0%
!! TTACTTAACAAAAAAAAAAA+AGG - chr1_4:3210090-3210109 None:intergenic 10.0%
!!! AATTATTTCTATATTTATGA+AGG + chr1_4:3210373-3210392 Msa0143950:intron 10.0%
!!! ATTATTTCTATATTTATGAA+GGG + chr1_4:3210374-3210393 Msa0143950:intron 10.0%
!! TATAAAATTCTTTACTATAT+CGG - chr1_4:3210898-3210917 None:intergenic 10.0%
!!! ATATTTTAATTTAAAGTTGA+AGG + chr1_4:3211238-3211257 Msa0143950:intron 10.0%
!! TACAATAAACAAACATAAAA+TGG - chr1_4:3203068-3203087 None:intergenic 15.0%
!!! TAGTTCAATTTTTTAAACAT+TGG - chr1_4:3203363-3203382 None:intergenic 15.0%
!! AAAAATCAAATTAAATTGAC+CGG - chr1_4:3203652-3203671 None:intergenic 15.0%
!! TGAAATTACAAATCATAAAT+TGG - chr1_4:3203805-3203824 None:intergenic 15.0%
!!! GTATGGTATTAAATAATTTT+TGG - chr1_4:3204566-3204585 None:intergenic 15.0%
!! GAAAATACACAAAAATATAA+GGG - chr1_4:3204875-3204894 None:intergenic 15.0%
!!! AATGTATATTTTAACATAAG+AGG + chr1_4:3205570-3205589 Msa0143950:intron 15.0%
!!! ATGTATATTTTAACATAAGA+GGG + chr1_4:3205571-3205590 Msa0143950:intron 15.0%
!!! TTTTTTTCAATATTCTCTTT+GGG - chr1_4:3206180-3206199 None:intergenic 15.0%
!!! TTTTTTTTCAATATTCTCTT+TGG - chr1_4:3206181-3206200 None:intergenic 15.0%
!!! GTTTTTTTTTACCATATTTA+TGG - chr1_4:3206320-3206339 None:intergenic 15.0%
!!! TATTTTTTAAATCTGATCAT+TGG + chr1_4:3206782-3206801 Msa0143950:intron 15.0%
!! TTGATTAAAATAGAAAATAG+GGG - chr1_4:3206976-3206995 None:intergenic 15.0%
!! AAAAGAATAAAAAAAAACTG+TGG + chr1_4:3208491-3208510 Msa0143950:intron 15.0%
!! TAATATTGATCTTTCATAAA+TGG + chr1_4:3209358-3209377 Msa0143950:intron 15.0%
!!! ATGGTTTTTTTTTTTTTTTG+TGG + chr1_4:3209377-3209396 Msa0143950:intron 15.0%
!!! TTACTAAAAATAGTGTTTTT+TGG + chr1_4:3209561-3209580 Msa0143950:intron 15.0%
!! TACCTATTATGATTATTATT+AGG - chr1_4:3209653-3209672 None:intergenic 15.0%
!!! ATATTTTTTGTTGAGATTTA+AGG - chr1_4:3209720-3209739 None:intergenic 15.0%
!!! CGTCTTTTTATTATTATATT+TGG - chr1_4:3209735-3209754 None:intergenic 15.0%
!!! TCAATTGATTTTATCTTTAT+TGG - chr1_4:3209903-3209922 None:intergenic 15.0%
!! TTAAAACGAATTTAAATATG+AGG - chr1_4:3210150-3210169 None:intergenic 15.0%
!! TATATAGTGTTTATGTAAAT+GGG - chr1_4:3210290-3210309 None:intergenic 15.0%
!!! AGTGATTATGATTTTAATTA+AGG + chr1_4:3210687-3210706 Msa0143950:intron 15.0%
!! GAAATTAAGAAAGAAAAAAT+TGG - chr1_4:3210724-3210743 None:intergenic 15.0%
!! ATAAAATTCTTTACTATATC+GGG - chr1_4:3210897-3210916 None:intergenic 15.0%
!!! ATCTAGAATATATACAAATT+AGG + chr1_4:3211092-3211111 Msa0143950:intron 15.0%
!!! TCTAGAATATATACAAATTA+GGG + chr1_4:3211093-3211112 Msa0143950:intron 15.0%
!! TTAAATCTTCATTAATATGT+AGG + chr1_4:3211471-3211490 Msa0143950:intron 15.0%
!! TTCTTTATATTAGACATATA+TGG + chr1_4:3211819-3211838 Msa0143950:three_prime_UTR 15.0%
!!! GAAATTTTCATGAGTTTAAT+TGG + chr1_4:3202916-3202935 Msa0143950:intron 20.0%
!! AAACAAACATAAAATGGTTT+CGG - chr1_4:3203062-3203081 None:intergenic 20.0%
!! ATAGTTATACATACATGTTT+AGG - chr1_4:3203301-3203320 None:intergenic 20.0%
!!! GATTTTTTGTGAATAATTGA+AGG - chr1_4:3203513-3203532 None:intergenic 20.0%
!! TTATGAACTAAGATTGTTTA+AGG - chr1_4:3203615-3203634 None:intergenic 20.0%
!!! AAAAGGATGTTATTATGTTT+TGG - chr1_4:3203685-3203704 None:intergenic 20.0%
!!! AAAACATAATAACATCCTTT+TGG + chr1_4:3203684-3203703 Msa0143950:intron 20.0%
!!! AATATTCACATATTTTTAGG+TGG + chr1_4:3204065-3204084 Msa0143950:intron 20.0%
!! AAACCATGTCTTTATTATTA+AGG - chr1_4:3204092-3204111 None:intergenic 20.0%
!! TAGTTTCTCCAAAAATATTA+AGG + chr1_4:3204269-3204288 Msa0143950:CDS 20.0%
!!! TTGAACTACCTTAATATTTT+TGG - chr1_4:3204280-3204299 None:intergenic 20.0%
!! AATAGTTCAAACATTTAGAA+AGG - chr1_4:3204306-3204325 None:intergenic 20.0%
!! CAAACTTATTATATGTCTTA+TGG + chr1_4:3204346-3204365 Msa0143950:intron 20.0%
!! GCAAGTTAAAAAAATTCTAT+AGG + chr1_4:3204410-3204429 Msa0143950:intron 20.0%
!! TTTGATCTGTTAAAAAATGA+AGG + chr1_4:3204438-3204457 Msa0143950:intron 20.0%
!! TTGATCTGTTAAAAAATGAA+GGG + chr1_4:3204439-3204458 Msa0143950:intron 20.0%
!!! TTGATTTGTAAAACTGTTTT+TGG + chr1_4:3204492-3204511 Msa0143950:intron 20.0%
!! AAATTGTATAATATACCACA+AGG + chr1_4:3204690-3204709 Msa0143950:intron 20.0%
!! AGATCAATAAATTAAGAAAG+GGG - chr1_4:3204766-3204785 None:intergenic 20.0%
!! GAGATCAATAAATTAAGAAA+GGG - chr1_4:3204767-3204786 None:intergenic 20.0%
!! TGAGATCAATAAATTAAGAA+AGG - chr1_4:3204768-3204787 None:intergenic 20.0%
!! GGAAAATACACAAAAATATA+AGG - chr1_4:3204876-3204895 None:intergenic 20.0%
!!! ATATTTCAATCATAAGTTGA+AGG + chr1_4:3204950-3204969 Msa0143950:CDS 20.0%
!!! TTTTTTTGGGTTGTTAAAAA+GGG - chr1_4:3205051-3205070 None:intergenic 20.0%
!!! ATTTTTTTGGGTTGTTAAAA+AGG - chr1_4:3205052-3205071 None:intergenic 20.0%
!! TTTAACAACCCAAAAAAATA+TGG + chr1_4:3205053-3205072 Msa0143950:CDS 20.0%
!!! TTGACTTACCATATTTTTTT+GGG - chr1_4:3205064-3205083 None:intergenic 20.0%
!!! TTTGACTTACCATATTTTTT+TGG - chr1_4:3205065-3205084 None:intergenic 20.0%
!! TATAATTATAGCAATAGTGT+TGG + chr1_4:3205218-3205237 Msa0143950:CDS 20.0%
!!! TAAAGCTCAATATATTTTGA+TGG - chr1_4:3205432-3205451 None:intergenic 20.0%
!! CTTATGCAAAAGATATTATT+GGG - chr1_4:3205540-3205559 None:intergenic 20.0%
!! TCTTATGCAAAAGATATTAT+TGG - chr1_4:3205541-3205560 None:intergenic 20.0%
!!! TTTTTTCAATATTCTCTTTG+GGG - chr1_4:3206179-3206198 None:intergenic 20.0%
!!! ATATTTTATGGATTACTCAA+AGG - chr1_4:3206697-3206716 None:intergenic 20.0%
!!! TATTTGTGTAAAATTTTACG+TGG + chr1_4:3206939-3206958 Msa0143950:intron 20.0%
!!! AAAAAAAAAACTTTTACAGG+GGG - chr1_4:3207088-3207107 None:intergenic 20.0%
!!! GAAAAAAAAAACTTTTACAG+GGG - chr1_4:3207089-3207108 None:intergenic 20.0%
!!! GGAAAAAAAAAACTTTTACA+GGG - chr1_4:3207090-3207109 None:intergenic 20.0%
!!! TGGAAAAAAAAAACTTTTAC+AGG - chr1_4:3207091-3207110 None:intergenic 20.0%
!!! CAAAAATTTTGGTTTTTGTA+TGG - chr1_4:3207132-3207151 None:intergenic 20.0%
!!! TCTGAAGAAATTTTTTTTAC+AGG + chr1_4:3207198-3207217 Msa0143950:intron 20.0%
!!! AAGAAATTTTTTTTACAGGA+GGG + chr1_4:3207202-3207221 Msa0143950:intron 20.0%
!! ATGTCTCTTAAAAACAAATT+GGG - chr1_4:3207502-3207521 None:intergenic 20.0%
!! AATGTCTCTTAAAAACAAAT+TGG - chr1_4:3207503-3207522 None:intergenic 20.0%
!! AATTCTTTGTAGCAAATATT+GGG - chr1_4:3208110-3208129 None:intergenic 20.0%
!! ATGTTCATACAAAATGAAAT+AGG - chr1_4:3208307-3208326 None:intergenic 20.0%
!!! TTTATTCTTTTTTGAGGAAA+CGG - chr1_4:3208482-3208501 None:intergenic 20.0%
!! ATTAGAGAATTCAAATTGTA+TGG + chr1_4:3208552-3208571 Msa0143950:intron 20.0%
!! TTAGAGAATTCAAATTGTAT+GGG + chr1_4:3208553-3208572 Msa0143950:intron 20.0%
!!! GTTTTATCATAGAAACAATA+TGG + chr1_4:3208599-3208618 Msa0143950:intron 20.0%
!!! TGTGATTTTTAAGAAAATAG+GGG - chr1_4:3208687-3208706 None:intergenic 20.0%
!!! GTGTGATTTTTAAGAAAATA+GGG - chr1_4:3208688-3208707 None:intergenic 20.0%
!!! TGTGTGATTTTTAAGAAAAT+AGG - chr1_4:3208689-3208708 None:intergenic 20.0%
!! AAAAATTACTAGACTTAATG+TGG - chr1_4:3208970-3208989 None:intergenic 20.0%
!!! AGTCTAGTAATTTTTTTCAA+AGG + chr1_4:3208975-3208994 Msa0143950:intron 20.0%
!!! TTTTTGCTTATATTTTGAGA+CGG - chr1_4:3209018-3209037 None:intergenic 20.0%
!!! GTTTTTTTTTTTTTTTGTGG+TGG + chr1_4:3209380-3209399 Msa0143950:intron 20.0%
!! CTATTATGATTATTATTAGG+CGG - chr1_4:3209650-3209669 None:intergenic 20.0%
!!! TAGAATAGAAAATCTCATTT+TGG - chr1_4:3209992-3210011 None:intergenic 20.0%
!! GAGATAAATTCTGATATTTA+GGG - chr1_4:3210194-3210213 None:intergenic 20.0%
!! AGAGATAAATTCTGATATTT+AGG - chr1_4:3210195-3210214 None:intergenic 20.0%
!! GAACATTTCATATGAATTTA+CGG - chr1_4:3210232-3210251 None:intergenic 20.0%
!! TATGAAATGTTCATTTCATT+TGG + chr1_4:3210240-3210259 Msa0143950:intron 20.0%
!! CTATATAGTGTTTATGTAAA+TGG - chr1_4:3210291-3210310 None:intergenic 20.0%
!! TTGGAATAATAATCTTCTTT+GGG - chr1_4:3210786-3210805 None:intergenic 20.0%
!!! TTTGGAATAATAATCTTCTT+TGG - chr1_4:3210787-3210806 None:intergenic 20.0%
!!! GAATTTTATAGAGAATATCA+AGG + chr1_4:3210908-3210927 Msa0143950:CDS 20.0%
!! TAGATAAAGTTAGCAAAAAA+GGG - chr1_4:3210944-3210963 None:intergenic 20.0%
!! ATTAATAAAATGCAACTTAC+TGG + chr1_4:3211067-3211086 Msa0143950:intron 20.0%
!! CTAGAATATATACAAATTAG+GGG + chr1_4:3211094-3211113 Msa0143950:intron 20.0%
!! TTCCAAAATCCAAAAAAATA+CGG + chr1_4:3211341-3211360 Msa0143950:CDS 20.0%
!!! ATCGATCATATTTTTTAGTT+AGG + chr1_4:3211377-3211396 Msa0143950:intron 20.0%
!!! TCGATCATATTTTTTAGTTA+GGG + chr1_4:3211378-3211397 Msa0143950:intron 20.0%
!!! TTTTTTAGTTAGGGTATATT+TGG + chr1_4:3211387-3211406 Msa0143950:intron 20.0%
!!! ATCAAGTGTATCATTTTTTG+TGG + chr1_4:3202596-3202615 Msa0143950:CDS 25.0%
! TGTAATATGTAGAACTTCTA+CGG - chr1_4:3202888-3202907 None:intergenic 25.0%
! AGAAGTTCTACATATTACAA+AGG + chr1_4:3202889-3202908 Msa0143950:intron 25.0%
! TTCTACATATTACAAAGGTT+GGG + chr1_4:3202894-3202913 Msa0143950:intron 25.0%
! AAAAACTTGAAACAAACAAC+TGG + chr1_4:3203194-3203213 Msa0143950:intron 25.0%
! TTGTGAATAATTGAAGGTTT+AGG - chr1_4:3203507-3203526 None:intergenic 25.0%
! CAAAAAATCAGACATTATAC+AGG + chr1_4:3203524-3203543 Msa0143950:intron 25.0%
! ATTTGACTATAGTTTCATAG+TGG - chr1_4:3203576-3203595 None:intergenic 25.0%
!!! CAATCACTAATTTTTTAGGT+TGG - chr1_4:3204391-3204410 None:intergenic 25.0%
!!! CTTGCAATCACTAATTTTTT+AGG - chr1_4:3204395-3204414 None:intergenic 25.0%
! CAGAACAAAAATTTCGTTTA+AGG + chr1_4:3204540-3204559 Msa0143950:intron 25.0%
! ATACCCAATACAAAATAAGT+GGG - chr1_4:3204650-3204669 None:intergenic 25.0%
! TATACCCAATACAAAATAAG+TGG - chr1_4:3204651-3204670 None:intergenic 25.0%
!!! ATTTAAGACCCACTTTTTTA+GGG - chr1_4:3204736-3204755 None:intergenic 25.0%
!!! AATTTAAGACCCACTTTTTT+AGG - chr1_4:3204737-3204756 None:intergenic 25.0%
! ATTCAGGACATATACAATTT+GGG + chr1_4:3204804-3204823 Msa0143950:intron 25.0%
! AATACACAAAAATATAAGGG+AGG - chr1_4:3204872-3204891 None:intergenic 25.0%
! TGAATTATTCATTGATATGC+AGG + chr1_4:3205152-3205171 Msa0143950:intron 25.0%
!! AATGGTACTCAAATTTTTGT+AGG + chr1_4:3205263-3205282 Msa0143950:CDS 25.0%
!! ATTTTCCATGAAATTTCTAC+TGG + chr1_4:3205356-3205375 Msa0143950:intron 25.0%
!!! ATATTTTGATGGAATTTCTG+TGG - chr1_4:3205421-3205440 None:intergenic 25.0%
!! AATAAAGTGTTCTTCTACAT+TGG + chr1_4:3205483-3205502 Msa0143950:intron 25.0%
!! ATAAAGTGTTCTTCTACATT+GGG + chr1_4:3205484-3205503 Msa0143950:intron 25.0%
! GATATTATTGGGTATGAAAT+TGG - chr1_4:3205529-3205548 None:intergenic 25.0%
!!! ATATTTTAACATAAGAGGGA+AGG + chr1_4:3205575-3205594 Msa0143950:intron 25.0%
!!! CATAATTCAAGCTTTTTTGT+AGG + chr1_4:3205602-3205621 Msa0143950:intron 25.0%
! AATGACTACACTCTATATAA+GGG - chr1_4:3205786-3205805 None:intergenic 25.0%
!! AAAAAGTGATCAATTTTCGT+CGG - chr1_4:3206155-3206174 None:intergenic 25.0%
! AAAAACAAGAAGAGAAATAG+AGG + chr1_4:3206197-3206216 Msa0143950:intron 25.0%
! AAAACAAGAAGAGAAATAGA+GGG + chr1_4:3206198-3206217 Msa0143950:intron 25.0%
! AGGTATTTATAGGTAGAAAT+GGG + chr1_4:3206277-3206296 Msa0143950:intron 25.0%
!!! TAAAGTTTGTTAAAAACGTG+TGG + chr1_4:3206343-3206362 Msa0143950:intron 25.0%
!!! CTATTTTAATCAATTCGACA+AGG + chr1_4:3206983-3207002 Msa0143950:intron 25.0%
!!! GAAGAAATTTTTTTTACAGG+AGG + chr1_4:3207201-3207220 Msa0143950:intron 25.0%
!!! CTGTAATATAGGTCATTTTT+GGG - chr1_4:3207260-3207279 None:intergenic 25.0%
! CAAAAATGACCTATATTACA+GGG + chr1_4:3207259-3207278 Msa0143950:intron 25.0%
! AAAAATGACCTATATTACAG+GGG + chr1_4:3207260-3207279 Msa0143950:intron 25.0%
! CACTACTCTTAATAATATAC+CGG - chr1_4:3207754-3207773 None:intergenic 25.0%
!! TTCTTTTTCTCTCTTTCTAT+TGG + chr1_4:3207813-3207832 Msa0143950:intron 25.0%
! TTTCTATTGGTCAAAAACAA+TGG + chr1_4:3207826-3207845 Msa0143950:intron 25.0%
! TGATCATATGATAATTCCAT+AGG + chr1_4:3207987-3208006 Msa0143950:intron 25.0%
! GTGTTTCATCAATAATTTCA+TGG + chr1_4:3208017-3208036 Msa0143950:intron 25.0%
! ATTCTTTGTAGCAAATATTG+GGG - chr1_4:3208109-3208128 None:intergenic 25.0%
! CAATTCTTTGTAGCAAATAT+TGG - chr1_4:3208111-3208130 None:intergenic 25.0%
!! TTTCCTGCAATATTTAACTT+TGG + chr1_4:3208135-3208154 Msa0143950:CDS 25.0%
!!! ACTTTTTTCAATAGATCAAC+TGG + chr1_4:3208225-3208244 Msa0143950:CDS 25.0%
! CTATGAAATCAAGAATGATT+CGG - chr1_4:3208266-3208285 None:intergenic 25.0%
! CATTTCCTCAAAAAACAAAA+AGG + chr1_4:3208795-3208814 Msa0143950:intron 25.0%
! GTGGTTTAACTAAAAAACAA+TGG - chr1_4:3208951-3208970 None:intergenic 25.0%
!! ACGAATTTTTCCTTGTATTT+TGG + chr1_4:3209099-3209118 Msa0143950:intron 25.0%
!! CGAATTTTTCCTTGTATTTT+GGG + chr1_4:3209100-3209119 Msa0143950:intron 25.0%
!! GTTTTGTCGTATAAATATGA+GGG - chr1_4:3209149-3209168 None:intergenic 25.0%
!! TGTTTTGTCGTATAAATATG+AGG - chr1_4:3209150-3209169 None:intergenic 25.0%
!! TTAGAGAACTTAAGTTGTAT+GGG - chr1_4:3209209-3209228 None:intergenic 25.0%
!! ATTAGAGAACTTAAGTTGTA+TGG - chr1_4:3209210-3209229 None:intergenic 25.0%
! GACAATGCATAATATATACA+AGG - chr1_4:3209425-3209444 None:intergenic 25.0%
! CGCCTAATAATAATCATAAT+AGG + chr1_4:3209648-3209667 Msa0143950:intron 25.0%
! ATAAATTCTGATATTTAGGG+TGG - chr1_4:3210191-3210210 None:intergenic 25.0%
!!! TATGTAAATGGGTTTGTTAT+TGG - chr1_4:3210279-3210298 None:intergenic 25.0%
! TTTGTGCTGAAGAAAAAAAA+TGG - chr1_4:3210411-3210430 None:intergenic 25.0%
! TTGATTGTACTGAATTTGAA+GGG - chr1_4:3210572-3210591 None:intergenic 25.0%
! ATTGATTGTACTGAATTTGA+AGG - chr1_4:3210573-3210592 None:intergenic 25.0%
!! TCTCTAATGAATTTTGCTTT+TGG - chr1_4:3210610-3210629 None:intergenic 25.0%
!! AATTTCAAAATTTTCTTGCC+AGG + chr1_4:3210738-3210757 Msa0143950:intron 25.0%
! TGGAATAATAATCTTCTTTG+GGG - chr1_4:3210785-3210804 None:intergenic 25.0%
! ACCAATATCAAATGTGTATA+AGG - chr1_4:3210811-3210830 None:intergenic 25.0%
! GTAGATAAAGTTAGCAAAAA+AGG - chr1_4:3210945-3210964 None:intergenic 25.0%
! CTTTATAGCATATGGAAAAT+TGG - chr1_4:3211177-3211196 None:intergenic 25.0%
!! CAATTTTCCATATGCTATAA+AGG + chr1_4:3211175-3211194 Msa0143950:CDS 25.0%
! GGAGAAATCATAAACATAAA+TGG + chr1_4:3211564-3211583 Msa0143950:CDS 25.0%
! AACCATCTACTAGAATAATA+TGG + chr1_4:3211616-3211635 Msa0143950:CDS 25.0%
! ACCATCTACTAGAATAATAT+GGG + chr1_4:3211617-3211636 Msa0143950:CDS 25.0%
! AAAATAACTGTGTTAAATCG+TGG + chr1_4:3211780-3211799 Msa0143950:three_prime_UTR 25.0%
CAATGAAATCGACAATTAGA+CGG - chr1_4:3202803-3202822 None:intergenic 30.0%
GTTCTACATATTACAAAGGT+TGG + chr1_4:3202893-3202912 Msa0143950:intron 30.0%
GACATGTGAATTTCATTGAT+GGG + chr1_4:3203454-3203473 Msa0143950:intron 30.0%
CATAATTCAATCAGTTGAAC+CGG + chr1_4:3203630-3203649 Msa0143950:intron 30.0%
GTTGCAAGAGACATATAATT+CGG - chr1_4:3203732-3203751 None:intergenic 30.0%
! GTAATTTCAGCTCAAAGTTT+TGG + chr1_4:3203816-3203835 Msa0143950:intron 30.0%
AATCTCTGAATTGAGTGTAT+TGG - chr1_4:3203983-3204002 None:intergenic 30.0%
TGTCTAATGAATTGTGTTCT+AGG - chr1_4:3204011-3204030 None:intergenic 30.0%
ACACAATTCATTAGACAACA+AGG + chr1_4:3204014-3204033 Msa0143950:CDS 30.0%
GGTCCTTAATAATAAAGACA+TGG + chr1_4:3204086-3204105 Msa0143950:intron 30.0%
TTAGAGAAATACTCTTCCTT+GGG - chr1_4:3204147-3204166 None:intergenic 30.0%
GCTTTGTACACATTTGATAT+TGG + chr1_4:3204168-3204187 Msa0143950:CDS 30.0%
GATATTGGTCAAAATGATCT+TGG + chr1_4:3204183-3204202 Msa0143950:CDS 30.0%
! GAGAAACTATTGATTATCTC+TGG - chr1_4:3204258-3204277 None:intergenic 30.0%
AATACAAAATAAGTGGGTGT+AGG - chr1_4:3204644-3204663 None:intergenic 30.0%
!!! TACACCCACTTATTTTGTAT+TGG + chr1_4:3204643-3204662 Msa0143950:intron 30.0%
!!! ACACCCACTTATTTTGTATT+GGG + chr1_4:3204644-3204663 Msa0143950:intron 30.0%
ATATAGTAAGTTACACCTTG+TGG - chr1_4:3204708-3204727 None:intergenic 30.0%
!!! TTTAAGACCCACTTTTTTAG+GGG - chr1_4:3204735-3204754 None:intergenic 30.0%
TTGATCTCATTTGATGAACT+TGG + chr1_4:3204779-3204798 Msa0143950:intron 30.0%
GATTCAGGACATATACAATT+TGG + chr1_4:3204803-3204822 Msa0143950:intron 30.0%
! GTATTTTCCATTAGCTGAAA+AGG + chr1_4:3204887-3204906 Msa0143950:intron 30.0%
! TTTTCATCCTTTTCAGCTAA+TGG - chr1_4:3204897-3204916 None:intergenic 30.0%
TTAGCTGAAAAGGATGAAAA+TGG + chr1_4:3204897-3204916 Msa0143950:intron 30.0%
! GAAATTGGCATTGAAATCAT+AGG - chr1_4:3205514-3205533 None:intergenic 30.0%
CAATGACTACACTCTATATA+AGG - chr1_4:3205787-3205806 None:intergenic 30.0%
CGTTACAATTTACTATGATG+AGG + chr1_4:3205809-3205828 Msa0143950:intron 30.0%
ACAGATTTAAATTTAGCCCA+AGG + chr1_4:3206085-3206104 Msa0143950:intron 30.0%
CAGATTTAAATTTAGCCCAA+GGG + chr1_4:3206086-3206105 Msa0143950:intron 30.0%
AAAATACATCATCAACCCTT+GGG - chr1_4:3206104-3206123 None:intergenic 30.0%
! AAAAGTGATCAATTTTCGTC+GGG - chr1_4:3206154-3206173 None:intergenic 30.0%
!! AAGTATGGAGAGGTATTTAT+AGG + chr1_4:3206267-3206286 Msa0143950:intron 30.0%
! GAGGTATTTATAGGTAGAAA+TGG + chr1_4:3206276-3206295 Msa0143950:intron 30.0%
ATTTATGGTAGTTACAACCT+AGG - chr1_4:3206305-3206324 None:intergenic 30.0%
GGTTGTAACTACCATAAATA+TGG + chr1_4:3206306-3206325 Msa0143950:intron 30.0%
TAATGGTCCAATGATGAATT+TGG + chr1_4:3206636-3206655 Msa0143950:intron 30.0%
TAAACAGCCAAATTCATCAT+TGG - chr1_4:3206646-3206665 None:intergenic 30.0%
TGATGAATTTGGCTGTTTAA+TGG + chr1_4:3206647-3206666 Msa0143950:intron 30.0%
GATGAATTTGGCTGTTTAAT+GGG + chr1_4:3206648-3206667 Msa0143950:intron 30.0%
TCGAGTAAAATGATATTGAG+CGG - chr1_4:3206756-3206775 None:intergenic 30.0%
TCAATTCGACAAGGTTTAAT+AGG + chr1_4:3206992-3207011 Msa0143950:intron 30.0%
! AGGTTTAATAGGTGATGTTT+TGG + chr1_4:3207003-3207022 Msa0143950:intron 30.0%
TATTACGATGATACTATTCC+AGG + chr1_4:3207030-3207049 Msa0143950:intron 30.0%
!!! TCGTTTTTTTATGGCCTATT+AGG + chr1_4:3207169-3207188 Msa0143950:intron 30.0%
!!! CGTTTTTTTATGGCCTATTA+GGG + chr1_4:3207170-3207189 Msa0143950:intron 30.0%
!!! GTTTTTTTATGGCCTATTAG+GGG + chr1_4:3207171-3207190 Msa0143950:intron 30.0%
!!! TTTTTTTATGGCCTATTAGG+GGG + chr1_4:3207172-3207191 Msa0143950:intron 30.0%
!! CCTGTAATATAGGTCATTTT+TGG - chr1_4:3207261-3207280 None:intergenic 30.0%
CCAAAAATGACCTATATTAC+AGG + chr1_4:3207258-3207277 Msa0143950:intron 30.0%
AAAATGACCTATATTACAGG+GGG + chr1_4:3207261-3207280 Msa0143950:intron 30.0%
!! TTAGCATTGAGATACACTTT+TGG + chr1_4:3207416-3207435 Msa0143950:intron 30.0%
!! TGTTTTTAAGAGACATTTGC+AGG + chr1_4:3207506-3207525 Msa0143950:intron 30.0%
GTCATGATAGTTGTCAAAAA+TGG - chr1_4:3207789-3207808 None:intergenic 30.0%
ATGAAACACAAATGAACCTA+TGG - chr1_4:3208006-3208025 None:intergenic 30.0%
TTCTTTGTAGCAAATATTGG+GGG - chr1_4:3208108-3208127 None:intergenic 30.0%
TTGAAAAAAGTCTCTCCATT+TGG - chr1_4:3208216-3208235 None:intergenic 30.0%
CGAATCATTCTTGATTTCAT+AGG + chr1_4:3208264-3208283 Msa0143950:CDS 30.0%
!! TGTTCATCACTTTTGAAAAG+TGG + chr1_4:3208344-3208363 Msa0143950:intron 30.0%
CATTCAAACAACTATTTGTG+TGG + chr1_4:3208417-3208436 Msa0143950:intron 30.0%
!! TTTTAAGAAAATAGGGGTGA+GGG - chr1_4:3208681-3208700 None:intergenic 30.0%
!! TTTTTAAGAAAATAGGGGTG+AGG - chr1_4:3208682-3208701 None:intergenic 30.0%
!! AGTCATCATTTCTTTTTCGT+TGG + chr1_4:3208748-3208767 Msa0143950:intron 30.0%
!!! CCAAACCTTTTTGTTTTTTG+AGG - chr1_4:3208803-3208822 None:intergenic 30.0%
CCTCAAAAAACAAAAAGGTT+TGG + chr1_4:3208800-3208819 Msa0143950:intron 30.0%
!! GTTTGATGATGTATCTTCTA+CGG - chr1_4:3208861-3208880 None:intergenic 30.0%
! CTAGTATTCGTGTATTGATA+AGG - chr1_4:3208892-3208911 None:intergenic 30.0%
!! TTTTTCCTTGTATTTTGGGA+CGG + chr1_4:3209104-3209123 Msa0143950:intron 30.0%
AGAAACGTATTTCTCTCATT+AGG - chr1_4:3209227-3209246 None:intergenic 30.0%
ATACTCTTATAGTAGATGCA+CGG - chr1_4:3209320-3209339 None:intergenic 30.0%
!!! TTTTTTTTTTTTGTGGTGGC+TGG + chr1_4:3209384-3209403 Msa0143950:intron 30.0%
!!! TTTTTTTTTTTGTGGTGGCT+GGG + chr1_4:3209385-3209404 Msa0143950:intron 30.0%
CATAATATATACAAGGTCCA+GGG - chr1_4:3209418-3209437 None:intergenic 30.0%
TTAAGATATGGACTTAGGTA+GGG - chr1_4:3210445-3210464 None:intergenic 30.0%
ATTAAGATATGGACTTAGGT+AGG - chr1_4:3210446-3210465 None:intergenic 30.0%
GAGAATTAAGATATGGACTT+AGG - chr1_4:3210450-3210469 None:intergenic 30.0%
AGTCCATATCTTAATTCTCT+AGG + chr1_4:3210451-3210470 Msa0143950:CDS 30.0%
GATCCTAGAGAATTAAGATA+TGG - chr1_4:3210457-3210476 None:intergenic 30.0%
CCATTGGGTATAATACTATT+AGG - chr1_4:3210532-3210551 None:intergenic 30.0%
CCTAATAGTATTATACCCAA+TGG + chr1_4:3210529-3210548 Msa0143950:CDS 30.0%
!! AATGGACTAAACATTCCATT+GGG - chr1_4:3210547-3210566 None:intergenic 30.0%
!! AAATGGACTAAACATTCCAT+TGG - chr1_4:3210548-3210567 None:intergenic 30.0%
TACTGAATTTGAAGGGAAAA+TGG - chr1_4:3210565-3210584 None:intergenic 30.0%
GCAAAATTCATTAGAGATCA+AGG + chr1_4:3210613-3210632 Msa0143950:CDS 30.0%
ATCAAATGTGTATAAGGCTT+TGG - chr1_4:3210805-3210824 None:intergenic 30.0%
GCCTTATACACATTTGATAT+TGG + chr1_4:3210807-3210826 Msa0143950:CDS 30.0%
GGAAAATTGGCCAAAATTAA+AGG - chr1_4:3211164-3211183 None:intergenic 30.0%
!!! TTTTGGAAAAGAGAGTACTT+AGG - chr1_4:3211329-3211348 None:intergenic 30.0%
!!! CACCGTATTTTTTTGGATTT+TGG - chr1_4:3211346-3211365 None:intergenic 30.0%
!!! TTTGTCTCACCGTATTTTTT+TGG - chr1_4:3211353-3211372 None:intergenic 30.0%
AAATGGTACAAACATTGTTG+TGG + chr1_4:3211581-3211600 Msa0143950:CDS 30.0%
AATGGTACAAACATTGTTGT+GGG + chr1_4:3211582-3211601 Msa0143950:CDS 30.0%
TCCCATATTATTCTAGTAGA+TGG - chr1_4:3211621-3211640 None:intergenic 30.0%
TCTACTAGAATAATATGGGA+TGG + chr1_4:3211621-3211640 Msa0143950:CDS 30.0%
!! ATTGCTACTTTCAATCACTG+TGG - chr1_4:3202640-3202659 None:intergenic 35.0%
AAATAAGTCTCTCCATATGG+TGG - chr1_4:3202750-3202769 None:intergenic 35.0%
TGGAAATAAGTCTCTCCATA+TGG - chr1_4:3202753-3202772 None:intergenic 35.0%
ACTTATTTCCACAGACCTAA+TGG + chr1_4:3202762-3202781 Msa0143950:CDS 35.0%
CTTATTTCCACAGACCTAAT+GGG + chr1_4:3202763-3202782 Msa0143950:CDS 35.0%
!! CGTCTAATTGTCGATTTCAT+TGG + chr1_4:3202801-3202820 Msa0143950:CDS 35.0%
!! AGTTAGTCCAGTTGATAAGA+AGG + chr1_4:3203388-3203407 Msa0143950:intron 35.0%
GTTGAACTCAAACATTTACG+AGG - chr1_4:3203424-3203443 None:intergenic 35.0%
CGACATGTGAATTTCATTGA+TGG + chr1_4:3203453-3203472 Msa0143950:intron 35.0%
! GTTAATTTGGTACTGCCAAA+AGG - chr1_4:3203702-3203721 None:intergenic 35.0%
ATTCGGACCAAGAGTTAATT+TGG - chr1_4:3203715-3203734 None:intergenic 35.0%
CAAGATATGCGCTTAGATAA+GGG - chr1_4:3203845-3203864 None:intergenic 35.0%
TCAAGATATGCGCTTAGATA+AGG - chr1_4:3203846-3203865 None:intergenic 35.0%
AAGCGCATATCTTGATTCTT+TGG + chr1_4:3203851-3203870 Msa0143950:CDS 35.0%
AGCGCATATCTTGATTCTTT+GGG + chr1_4:3203852-3203871 Msa0143950:CDS 35.0%
GTTTGCACCATGTGAAAAAT+TGG - chr1_4:3203880-3203899 None:intergenic 35.0%
TATTGGACATCAAGGTAGAA+AGG - chr1_4:3203966-3203985 None:intergenic 35.0%
ATTGAGTGTATTGGACATCA+AGG - chr1_4:3203974-3203993 None:intergenic 35.0%
GACATGGTTTACTTTGTAAG+AGG + chr1_4:3204102-3204121 Msa0143950:intron 35.0%
CTTAGAGAAATACTCTTCCT+TGG - chr1_4:3204148-3204167 None:intergenic 35.0%
!! CAAGGAAGAGTATTTCTCTA+AGG + chr1_4:3204146-3204165 Msa0143950:CDS 35.0%
!!! GTTTTTGGAACATGACAATC+TGG + chr1_4:3204507-3204526 Msa0143950:intron 35.0%
CAGCATAAGACAAACTTGTA+TGG - chr1_4:3204583-3204602 None:intergenic 35.0%
ATATACACCCCCTAAAAAAG+TGG + chr1_4:3204724-3204743 Msa0143950:intron 35.0%
TATACACCCCCTAAAAAAGT+GGG + chr1_4:3204725-3204744 Msa0143950:intron 35.0%
!!! TTAAGACCCACTTTTTTAGG+GGG - chr1_4:3204734-3204753 None:intergenic 35.0%
! TTTGATGAACTTGGTGATTC+AGG + chr1_4:3204788-3204807 Msa0143950:intron 35.0%
! ATTTGGGTGCTAGATCATTT+TGG + chr1_4:3204820-3204839 Msa0143950:intron 35.0%
! TCATTTTGGATACACAACAC+AGG + chr1_4:3204834-3204853 Msa0143950:intron 35.0%
ACATATGTGATTGCAGCTAA+AGG - chr1_4:3205005-3205024 None:intergenic 35.0%
! TATAGCAATAGTGTTGGATG+TGG + chr1_4:3205224-3205243 Msa0143950:CDS 35.0%
AAGCTCCAGTAGAAATTTCA+TGG - chr1_4:3205364-3205383 None:intergenic 35.0%
!!! AAGCTTTTTTGTAGGACAGA+TGG + chr1_4:3205610-3205629 Msa0143950:intron 35.0%
CAGGTCGGATCATATATATA+GGG - chr1_4:3205645-3205664 None:intergenic 35.0%
TCAGGTCGGATCATATATAT+AGG - chr1_4:3205646-3205665 None:intergenic 35.0%
CAAAATACCAACTTCAGCAT+TGG - chr1_4:3205749-3205768 None:intergenic 35.0%
CAATTTACTATGATGAGGAG+CGG + chr1_4:3205814-3205833 Msa0143950:intron 35.0%
AATGCGCATATTAAGTAACG+TGG + chr1_4:3205980-3205999 Msa0143950:intron 35.0%
! CAAGAAGTTCTTTTTACCCA+CGG - chr1_4:3206054-3206073 None:intergenic 35.0%
TGGGTAAAAAGAACTTCTTG+TGG + chr1_4:3206054-3206073 Msa0143950:intron 35.0%
GAAAATACATCATCAACCCT+TGG - chr1_4:3206105-3206124 None:intergenic 35.0%
! ATGATGTATTTTCCCCAAGA+AGG + chr1_4:3206112-3206131 Msa0143950:intron 35.0%
! AAAGTGATCAATTTTCGTCG+GGG - chr1_4:3206153-3206172 None:intergenic 35.0%
! GTTAAAAACGTGTGGATTGA+AGG + chr1_4:3206351-3206370 Msa0143950:intron 35.0%
! AACTAACGCAAGGGTATATT+TGG + chr1_4:3206532-3206551 Msa0143950:intron 35.0%
! TATTTTACAGGGAGTAAACC+TGG - chr1_4:3207239-3207258 None:intergenic 35.0%
! TTTTTGTATGGCCTATTAGG+GGG - chr1_4:3207120-3207139 None:intergenic 35.0%
! GTTTTTGTATGGCCTATTAG+GGG - chr1_4:3207121-3207140 None:intergenic 35.0%
! GGTTTTTGTATGGCCTATTA+GGG - chr1_4:3207122-3207141 None:intergenic 35.0%
! TGGTTTTTGTATGGCCTATT+AGG - chr1_4:3207123-3207142 None:intergenic 35.0%
ACAAATTGGGACATTCATTG+TGG - chr1_4:3207489-3207508 None:intergenic 35.0%
AATACAATCCCCAGAAAGAA+AGG + chr1_4:3207549-3207568 Msa0143950:intron 35.0%
! ATAGCCTTTCTTGTTTGACT+GGG - chr1_4:3207696-3207715 None:intergenic 35.0%
! AATAGCCTTTCTTGTTTGAC+TGG - chr1_4:3207697-3207716 None:intergenic 35.0%
TCTACTTTGATATCTCGATC+CGG + chr1_4:3207732-3207751 Msa0143950:intron 35.0%
TGGCACAAATAGAGTTTCTT+AGG + chr1_4:3208037-3208056 Msa0143950:intron 35.0%
GCACCAAAGTTAAATATTGC+AGG - chr1_4:3208141-3208160 None:intergenic 35.0%
! TCAACTGGAAGATTTTCTGA+TGG + chr1_4:3208240-3208259 Msa0143950:CDS 35.0%
GATAAAACATGATCATGTGC+TGG - chr1_4:3208587-3208606 None:intergenic 35.0%
!!! TTTTTTTTTTGTGGTGGCTG+GGG + chr1_4:3209386-3209405 Msa0143950:intron 35.0%
GCATAATATATACAAGGTCC+AGG - chr1_4:3209419-3209438 None:intergenic 35.0%
GATCTATCGTTACACCATTT+AGG - chr1_4:3209482-3209501 None:intergenic 35.0%
! CTGCTGATATATCTGTGTTT+TGG - chr1_4:3209676-3209695 None:intergenic 35.0%
CAAAACACAGATATATCAGC+AGG + chr1_4:3209674-3209693 Msa0143950:intron 35.0%
!! GGTTTGTTATTGGCATTCTT+TGG - chr1_4:3210269-3210288 None:intergenic 35.0%
ACACTATATAGAAGCTCACA+TGG + chr1_4:3210300-3210319 Msa0143950:intron 35.0%
ACACTATATAGAAGCTCACA+TGG + chr1_4:3210300-3210319 Msa0143950:intron 35.0%
! TTTTCTTCAGCACAAAGCTT+TGG + chr1_4:3210415-3210434 Msa0143950:intron 35.0%
! TTCAAAATTTTCTTGCCAGG+AGG + chr1_4:3210741-3210760 Msa0143950:intron 35.0%
!!! GATCTTACTGCTGGTTTTTT+TGG + chr1_4:3210837-3210856 Msa0143950:CDS 35.0%
ATATATACAAATTAGGGGCC+AGG + chr1_4:3211099-3211118 Msa0143950:CDS 35.0%
! TCATTTTGGATACACAACAC+TGG + chr1_4:3204834-3204853 Msa0143950:intron 35.0%
! ATTAAAGGCACACATCCAAT+TGG - chr1_4:3211149-3211168 None:intergenic 35.0%
!! TGGATGTGTGCCTTTAATTT+TGG + chr1_4:3211151-3211170 Msa0143950:CDS 35.0%
TGGCTATCCTTTATAGCATA+TGG - chr1_4:3211185-3211204 None:intergenic 35.0%
TATGCTATAAAGGATAGCCA+AGG + chr1_4:3211185-3211204 Msa0143950:CDS 35.0%
GTTAGGGTATATTTGGATTG+TGG + chr1_4:3211394-3211413 Msa0143950:intron 35.0%
TATAACATTCGTGCTAGATG+TGG + chr1_4:3211543-3211562 Msa0143950:CDS 35.0%
GTCTTTGATCAAATCTCTAC+TGG + chr1_4:3211675-3211694 Msa0143950:CDS 35.0%
ATCCTTCCATTCCACTAAAT+AGG + chr1_4:3211709-3211728 Msa0143950:CDS 35.0%
TCCTTCCATTCCACTAAATA+GGG + chr1_4:3211710-3211729 Msa0143950:CDS 35.0%
TTGTAACATGCCCTATTTAG+TGG - chr1_4:3211723-3211742 None:intergenic 35.0%
TTCCCTGCAATCTTCAACTT+TGG + chr1_4:3202672-3202691 Msa0143950:CDS 40.0%
CACCAAAGTTGAAGATTGCA+GGG - chr1_4:3202677-3202696 None:intergenic 40.0%
TCACCAAAGTTGAAGATTGC+AGG - chr1_4:3202678-3202697 None:intergenic 40.0%
TGAGTCACCTTCTTATCAAC+TGG - chr1_4:3203398-3203417 None:intergenic 40.0%
GGCAGTACCAAATTAACTCT+TGG + chr1_4:3203705-3203724 Msa0143950:intron 40.0%
GCGCATATCTTGATTCTTTG+GGG + chr1_4:3203853-3203872 Msa0143950:CDS 40.0%
! TTGGGGACCAATTTTTCACA+TGG + chr1_4:3203870-3203889 Msa0143950:CDS 40.0%
TGAGGTATAATACTAGGTGG+GGG - chr1_4:3203930-3203949 None:intergenic 40.0%
CTGAGGTATAATACTAGGTG+GGG - chr1_4:3203931-3203950 None:intergenic 40.0%
CCTGAGGTATAATACTAGGT+GGG - chr1_4:3203932-3203951 None:intergenic 40.0%
CCACCTAGTATTATACCTCA+GGG + chr1_4:3203930-3203949 Msa0143950:CDS 40.0%
ACATGACAATCTGGAGACAA+TGG + chr1_4:3204516-3204535 Msa0143950:intron 40.0%
! CATCACCTAGTTGTTTGTTG+TGG + chr1_4:3205182-3205201 Msa0143950:CDS 40.0%
CATAGCCACAACAAACAACT+AGG - chr1_4:3205190-3205209 None:intergenic 40.0%
!! CTAGTTGTTTGTTGTGGCTA+TGG + chr1_4:3205188-3205207 Msa0143950:CDS 40.0%
TTGAGTACCATTGACCTCTA+TGG - chr1_4:3205255-3205274 None:intergenic 40.0%
ACCATCTGCAAGAGTGAATT+GGG + chr1_4:3205298-3205317 Msa0143950:CDS 40.0%
TCCATCCATTCCCTTGAATA+TGG + chr1_4:3205391-3205410 Msa0143950:intron 40.0%
AGTTGTTGTCCTTGTAAGGT+TGG + chr1_4:3205692-3205711 Msa0143950:intron 40.0%
CTCATTGTTCCAACCTTACA+AGG - chr1_4:3205704-3205723 None:intergenic 40.0%
TGTAAGGTTGGAACAATGAG+AGG + chr1_4:3205704-3205723 Msa0143950:intron 40.0%
AGCAAAATTCAAGGGAAAGC+TGG - chr1_4:3205879-3205898 None:intergenic 40.0%
AAATAGTGAGCAGCCTTCTT+GGG - chr1_4:3206128-3206147 None:intergenic 40.0%
AAAATAGTGAGCAGCCTTCT+TGG - chr1_4:3206129-3206148 None:intergenic 40.0%
TGAGATGGTGTGAGGAATTA+GGG + chr1_4:3206244-3206263 Msa0143950:intron 40.0%
TGTGAGGAATTAGGGAAGTA+TGG + chr1_4:3206252-3206271 Msa0143950:intron 40.0%
! AGAACACACGTTTTTGTGGA+CGG - chr1_4:3206392-3206411 None:intergenic 40.0%
TGCGTTAGTTAAGTCATGCA+TGG + chr1_4:3206471-3206490 Msa0143950:intron 40.0%
GTATATTTGGAAGCAGTGCA+GGG + chr1_4:3206545-3206564 Msa0143950:intron 40.0%
GCAAAATTCCTTTCCCTTTG+TGG + chr1_4:3206594-3206613 Msa0143950:intron 40.0%
TCATCATTGGACCATTACTG+CGG - chr1_4:3206633-3206652 None:intergenic 40.0%
AGATTCGTCAAGATGAACGA+TGG - chr1_4:3206896-3206915 None:intergenic 40.0%
TTCCAAAATACCCCCCTAAT+AGG + chr1_4:3207106-3207125 Msa0143950:intron 40.0%
! TTTTGTATGGCCTATTAGGG+GGG - chr1_4:3207119-3207138 None:intergenic 40.0%
TCTTCAGATTACCCCCTAAT+AGG - chr1_4:3207186-3207205 None:intergenic 40.0%
TGTGTTGTCCTTTCTTTCTG+GGG - chr1_4:3207560-3207579 None:intergenic 40.0%
CTGTGTTGTCCTTTCTTTCT+GGG - chr1_4:3207561-3207580 None:intergenic 40.0%
GATACCCAGTCAAACAAGAA+AGG + chr1_4:3207689-3207708 Msa0143950:intron 40.0%
AAATGCTGATACTGGTGGTT+TGG + chr1_4:3208164-3208183 Msa0143950:CDS 40.0%
GATCTCTTATCGTAGATGCA+TGG + chr1_4:3208439-3208458 Msa0143950:intron 40.0%
GTGCGTGCAACTATAATCTT+TGG + chr1_4:3209175-3209194 Msa0143950:intron 40.0%
TCTCTCATTAGGTAGATGCT+CGG - chr1_4:3209268-3209287 None:intergenic 40.0%
! TGAGCTTAACTAAGTTGGCA+TGG - chr1_4:3209447-3209466 None:intergenic 40.0%
CAGAATTTATCTCTCTCCGT+CGG + chr1_4:3210201-3210220 Msa0143950:intron 40.0%
TGAATTTACGGTATAGCCGA+CGG - chr1_4:3210220-3210239 None:intergenic 40.0%
CTAGGATCAAACTTCACACA+TGG + chr1_4:3210469-3210488 Msa0143950:CDS 40.0%
AATGTTGCAAATACACCTCC+TGG - chr1_4:3210759-3210778 None:intergenic 40.0%
GGTCAAAATGATCTTACTGC+TGG + chr1_4:3210828-3210847 Msa0143950:CDS 40.0%
GTTGTGTATCCAAAATGACC+TGG - chr1_4:3211120-3211139 None:intergenic 40.0%
ATACACAACACTGGACCAAT+TGG + chr1_4:3211131-3211150 Msa0143950:CDS 40.0%
TGTATTGCTTTGCACAACCT+TGG - chr1_4:3211205-3211224 None:intergenic 40.0%
ACATATGTGATTGCAGCTAG+TGG - chr1_4:3211293-3211312 None:intergenic 40.0%
ACATGCCCTATTTAGTGGAA+TGG - chr1_4:3211718-3211737 None:intergenic 40.0%
ATTTCCACAGACCTAATGGG+AGG + chr1_4:3202766-3202785 Msa0143950:CDS 45.0%
CCCACCTAGTATTATACCTC+AGG + chr1_4:3203929-3203948 Msa0143950:CDS 45.0%
CCCTGAGGTATAATACTAGG+TGG - chr1_4:3203933-3203952 None:intergenic 45.0%
CCACCCTGAGGTATAATACT+AGG - chr1_4:3203936-3203955 None:intergenic 45.0%
CCTAGTATTATACCTCAGGG+TGG + chr1_4:3203933-3203952 Msa0143950:CDS 45.0%
ATTTGCAAGCTTGATGCCCA+AGG + chr1_4:3204128-3204147 Msa0143950:CDS 45.0%
! GGTCAAAATGATCTTGGTGC+TGG + chr1_4:3204189-3204208 Msa0143950:CDS 45.0%
!!! GATCTTGGTGCTGGCTTTTT+TGG + chr1_4:3204198-3204217 Msa0143950:CDS 45.0%
ATACACAACACAGGACCCAT+TGG + chr1_4:3204843-3204862 Msa0143950:intron 45.0%
ATATAAGGGAGGCAGCCAAT+GGG - chr1_4:3204861-3204880 None:intergenic 45.0%
AATATAAGGGAGGCAGCCAA+TGG - chr1_4:3204862-3204881 None:intergenic 45.0%
!! GTTGTTTGTTGTGGCTATGG+AGG + chr1_4:3205191-3205210 Msa0143950:CDS 45.0%
! AGCAATAGTGTTGGATGTGG+AGG + chr1_4:3205227-3205246 Msa0143950:CDS 45.0%
GACCATCTGCAAGAGTGAAT+TGG + chr1_4:3205297-3205316 Msa0143950:CDS 45.0%
TCCCAATTCACTCTTGCAGA+TGG - chr1_4:3205302-3205321 None:intergenic 45.0%
TCTGCAAGAGTGAATTGGGA+TGG + chr1_4:3205302-3205321 Msa0143950:CDS 45.0%
GCCATATTCAAGGGAATGGA+TGG - chr1_4:3205395-3205414 None:intergenic 45.0%
GCATGCCATATTCAAGGGAA+TGG - chr1_4:3205399-3205418 None:intergenic 45.0%
CTGTGGCATGCCATATTCAA+GGG - chr1_4:3205404-3205423 None:intergenic 45.0%
TCTGTGGCATGCCATATTCA+AGG - chr1_4:3205405-3205424 None:intergenic 45.0%
AGTTGTTCTGCTGATCAGGT+CGG - chr1_4:3205660-3205679 None:intergenic 45.0%
TGGAAGTTGTTCTGCTGATC+AGG - chr1_4:3205664-3205683 None:intergenic 45.0%
CAGCAGAACAACTTCCAATG+CGG + chr1_4:3205667-3205686 Msa0143950:intron 45.0%
GGTGAGTTGTTGTCCTTGTA+AGG + chr1_4:3205688-3205707 Msa0143950:intron 45.0%
AAGGTTGGAACAATGAGAGG+TGG + chr1_4:3205707-3205726 Msa0143950:intron 45.0%
AAGCACTCCAATGCTGAAGT+TGG + chr1_4:3205739-3205758 Msa0143950:intron 45.0%
! GAGGAGCGGTTATAGTTTGT+TGG + chr1_4:3205828-3205847 Msa0143950:intron 45.0%
GGGTGGAGAGCAAAATTCAA+GGG - chr1_4:3205887-3205906 None:intergenic 45.0%
TGGGTGGAGAGCAAAATTCA+AGG - chr1_4:3205888-3205907 None:intergenic 45.0%
! GCATTTTAGGCATGGTTGCA+GGG - chr1_4:3205927-3205946 None:intergenic 45.0%
! ACCGCAGAAACTTTTTACCG+TGG + chr1_4:3206034-3206053 Msa0143950:intron 45.0%
CCCACGGTAAAAAGTTTCTG+CGG - chr1_4:3206038-3206057 None:intergenic 45.0%
! CCGCAGAAACTTTTTACCGT+GGG + chr1_4:3206035-3206054 Msa0143950:intron 45.0%
AATAGTGAGCAGCCTTCTTG+GGG - chr1_4:3206127-3206146 None:intergenic 45.0%
AGAAATAGAGGGAGAGAGTG+AGG + chr1_4:3206209-3206228 Msa0143950:intron 45.0%
GTGAGATGGTGTGAGGAATT+AGG + chr1_4:3206243-3206262 Msa0143950:intron 45.0%
! GGAATTAGGGAAGTATGGAG+AGG + chr1_4:3206257-3206276 Msa0143950:intron 45.0%
ATAGGTAGAAATGGGAGCCT+AGG + chr1_4:3206285-3206304 Msa0143950:intron 45.0%
! CGCAAGAACACACGTTTTTG+TGG - chr1_4:3206396-3206415 None:intergenic 45.0%
TGCGTGACTTAACTAACGCA+AGG + chr1_4:3206522-3206541 Msa0143950:intron 45.0%
GCGTGACTTAACTAACGCAA+GGG + chr1_4:3206523-3206542 Msa0143950:intron 45.0%
GGTATATTTGGAAGCAGTGC+AGG + chr1_4:3206544-3206563 Msa0143950:intron 45.0%
! TTTGGCTGTTTAATGGGCCT+TGG + chr1_4:3206654-3206673 Msa0143950:intron 45.0%
CCTGTGTTGTCCTTTCTTTC+TGG - chr1_4:3207562-3207581 None:intergenic 45.0%
CCAGAAAGAAAGGACAACAC+AGG + chr1_4:3207559-3207578 Msa0143950:intron 45.0%
GGTGCTTCAAATGCTGATAC+TGG + chr1_4:3208156-3208175 Msa0143950:CDS 45.0%
GCTTCAAATGCTGATACTGG+TGG + chr1_4:3208159-3208178 Msa0143950:CDS 45.0%
! TGGCAACTGAAGTGCTTGAA+AGG - chr1_4:3208196-3208215 None:intergenic 45.0%
CAAGCACTTCAGTTGCCAAA+TGG + chr1_4:3208198-3208217 Msa0143950:CDS 45.0%
GATGCATGGTGCAACAAACA+TGG + chr1_4:3208453-3208472 Msa0143950:intron 45.0%
!!! TCCTTGTATTTTGGGACGGA+TGG + chr1_4:3209108-3209127 Msa0143950:intron 45.0%
TCCATCCGTCCCAAAATACA+AGG - chr1_4:3209112-3209131 None:intergenic 45.0%
!! ATGCTCGGTGCAACAATTGT+GGG - chr1_4:3209253-3209272 None:intergenic 45.0%
CGTCGTGAGCTTAACTAAGT+TGG - chr1_4:3209452-3209471 None:intergenic 45.0%
CACGACGACTCTTTCCTAAA+TGG + chr1_4:3209465-3209484 Msa0143950:intron 45.0%
GTGCAAACTTTGCAACAGCA+GGG + chr1_4:3210491-3210510 Msa0143950:CDS 45.0%
! AATTAGGGGCCAGGTCATTT+TGG + chr1_4:3211108-3211127 Msa0143950:CDS 45.0%
ATCCACACGAAGTTGAGCTA+GGG - chr1_4:3211267-3211286 None:intergenic 45.0%
AGGATTTGAGCTACCACATG+TGG + chr1_4:3211491-3211510 Msa0143950:intron 45.0%
GGATGGTACACATTACACAG+AGG + chr1_4:3211638-3211657 Msa0143950:CDS 45.0%
GCCCTATTTAGTGGAATGGA+AGG - chr1_4:3211714-3211733 None:intergenic 45.0%
!! TAATTATAATTCTAAATAAA+AGG + chr1_4:3203770-3203789 Msa0143950:intron 5.0%
!!! ATTAAAAAAAATATTTTACA+GGG - chr1_4:3207062-3207081 None:intergenic 5.0%
!!! AATTAAAAAAAATATTTTAC+AGG - chr1_4:3207063-3207082 None:intergenic 5.0%
!!! ATTTTTTTTTACAAAAATTT+TGG - chr1_4:3207143-3207162 None:intergenic 5.0%
!! TTTATTAATATATATAACAA+GGG - chr1_4:3211056-3211075 None:intergenic 5.0%
!!! TTTTATTAATATATATAACA+AGG - chr1_4:3211057-3211076 None:intergenic 5.0%
GGTGACTCAAACTCAGACAC+TGG + chr1_4:3202693-3202712 Msa0143950:CDS 50.0%
GACTCAAACTCAGACACTGG+TGG + chr1_4:3202696-3202715 Msa0143950:CDS 50.0%
AAACTCAGACACTGGTGGCT+TGG + chr1_4:3202701-3202720 Msa0143950:CDS 50.0%
AGTACCTCCCATTAGGTCTG+TGG - chr1_4:3202773-3202792 None:intergenic 50.0%
! CCATCAGAGTACCTCCCATT+AGG - chr1_4:3202780-3202799 None:intergenic 50.0%
!! CCTAATGGGAGGTACTCTGA+TGG + chr1_4:3202777-3202796 Msa0143950:CDS 50.0%
AAAGGACTGTATCCACCCTG+AGG - chr1_4:3203948-3203967 None:intergenic 50.0%
TGGATGTGGAGGAACCATAG+AGG + chr1_4:3205238-3205257 Msa0143950:CDS 50.0%
GGAGGAACCATAGAGGTCAA+TGG + chr1_4:3205245-3205264 Msa0143950:CDS 50.0%
AGGACAACAACTCACCGCAT+TGG - chr1_4:3205684-3205703 None:intergenic 50.0%
! TTCAGCATTGGAGTGCTTGC+AGG - chr1_4:3205737-3205756 None:intergenic 50.0%
AGGGAAAGCTGGCAGCAATA+CGG - chr1_4:3205868-3205887 None:intergenic 50.0%
! GGCATTTTAGGCATGGTTGC+AGG - chr1_4:3205928-3205947 None:intergenic 50.0%
!!! AACTAGCGCAGGGGCATTTT+AGG - chr1_4:3205940-3205959 None:intergenic 50.0%
TGCGCAAGTTAACTAGCGCA+GGG - chr1_4:3205950-3205969 None:intergenic 50.0%
TTGCGCAAGTTAACTAGCGC+AGG - chr1_4:3205951-3205970 None:intergenic 50.0%
GGCGTAAGTTAAGTGACGCA+TGG + chr1_4:3206001-3206020 Msa0143950:intron 50.0%
AATAGAGGGAGAGAGTGAGG+AGG + chr1_4:3206212-3206231 Msa0143950:intron 50.0%
ATAGAGGGAGAGAGTGAGGA+GGG + chr1_4:3206213-3206232 Msa0143950:intron 50.0%
GGAGAAAGTGAGATGGTGTG+AGG + chr1_4:3206236-3206255 Msa0143950:intron 50.0%
! ACACACGTTTTTGTGGACGG+TGG - chr1_4:3206389-3206408 None:intergenic 50.0%
TCTTGCGTTAACTCGCGCAT+AGG + chr1_4:3206409-3206428 Msa0143950:intron 50.0%
TGACTTAAGTCACGCACCAC+TGG - chr1_4:3206435-3206454 None:intergenic 50.0%
TGCGTGACTTAAGTCACGCA+TGG + chr1_4:3206439-3206458 Msa0143950:intron 50.0%
TCCTTTCCCTTTGTGGAGAG+TGG + chr1_4:3206601-3206620 Msa0143950:intron 50.0%
CCTTTCCCTTTGTGGAGAGT+GGG + chr1_4:3206602-3206621 Msa0143950:intron 50.0%
CATATGCTTGCAGCAGTCCA+AGG - chr1_4:3206674-3206693 None:intergenic 50.0%
!!! GGCCTATTAGGGGGGTATTT+TGG - chr1_4:3207111-3207130 None:intergenic 50.0%
!! TGCTCGGTGCAACAATTGTG+GGG - chr1_4:3209252-3209271 None:intergenic 50.0%
!! GATGCTCGGTGCAACAATTG+TGG - chr1_4:3209254-3209273 None:intergenic 50.0%
GATGCACGGTGCAACAATTG+TGG - chr1_4:3209306-3209325 None:intergenic 50.0%
GGTGCAAACTTTGCAACAGC+AGG + chr1_4:3210490-3210509 Msa0143950:CDS 50.0%
GATCCACACGAAGTTGAGCT+AGG - chr1_4:3211268-3211287 None:intergenic 50.0%
CTACCACATGTGGCATGTTG+TGG + chr1_4:3211501-3211520 Msa0143950:CDS 50.0%
TAGCCACAACATGCCACATG+TGG - chr1_4:3211507-3211526 None:intergenic 50.0%
CATGTGGCATGTTGTGGCTA+TGG + chr1_4:3211507-3211526 Msa0143950:CDS 50.0%
!! TGGTGGCGTTGGTGCTTGAA+GGG - chr1_4:3202733-3202752 None:intergenic 55.0%
!! ATGGTGGCGTTGGTGCTTGA+AGG - chr1_4:3202734-3202753 None:intergenic 55.0%
CAAGCACCAACGCCACCATA+TGG + chr1_4:3202735-3202754 Msa0143950:CDS 55.0%
! GTCTCTCCATATGGTGGCGT+TGG - chr1_4:3202744-3202763 None:intergenic 55.0%
CTGGCAGCAATACGGAGCAA+TGG - chr1_4:3205860-3205879 None:intergenic 55.0%
TGCGAGCAAAATGTGCTGGG+TGG - chr1_4:3205904-3205923 None:intergenic 55.0%
GGGTGCGAGCAAAATGTGCT+GGG - chr1_4:3205907-3205926 None:intergenic 55.0%
AGGGTGCGAGCAAAATGTGC+TGG - chr1_4:3205908-3205927 None:intergenic 55.0%
GCGCAAGTTAACTAGCGCAG+GGG - chr1_4:3205949-3205968 None:intergenic 55.0%
TAGAGGGAGAGAGTGAGGAG+GGG + chr1_4:3206214-3206233 Msa0143950:intron 55.0%
AGGAGGGGGAGAAAGTGAGA+TGG + chr1_4:3206229-3206248 Msa0143950:intron 55.0%
TTAACTCGCGCATAGGCCAG+TGG + chr1_4:3206416-3206435 Msa0143950:intron 55.0%
CCCACTCTCCACAAAGGGAA+AGG - chr1_4:3206605-3206624 None:intergenic 55.0%
TCACGCCCACTCTCCACAAA+GGG - chr1_4:3206610-3206629 None:intergenic 55.0%
AGCCCTAGCTCAACTTCGTG+TGG + chr1_4:3211262-3211281 Msa0143950:CDS 55.0%
GTGGCATGTTGTGGCTATGG+AGG + chr1_4:3211510-3211529 Msa0143950:CDS 55.0%
!!! GCGCAGGGGCATTTTAGGCA+TGG - chr1_4:3205935-3205954 None:intergenic 60.0%
AGAGGGAGAGAGTGAGGAGG+GGG + chr1_4:3206215-3206234 Msa0143950:intron 60.0%
AGGGCGCGAGCAAAATGTGC+TGG + chr1_4:3206564-3206583 Msa0143950:intron 60.0%
GGGCGCGAGCAAAATGTGCT+GGG + chr1_4:3206565-3206584 Msa0143950:intron 60.0%
CGCGAGCAAAATGTGCTGGG+TGG + chr1_4:3206568-3206587 Msa0143950:intron 60.0%
GTCACGCCCACTCTCCACAA+AGG - chr1_4:3206611-3206630 None:intergenic 60.0%
AGTGGGCGTGACCGCAGTAA+TGG + chr1_4:3206619-3206638 Msa0143950:intron 60.0%
GGTGGCTGGGGTTTGAACCC+TGG + chr1_4:3209398-3209417 Msa0143950:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 3202585 3211853 3202585 ID=Msa0143950;Name=Msa0143950
chr1_4 mRNA 3202585 3211853 3202585 ID=Msa0143950-mRNA-1;Parent=Msa0143950;Name=Msa0143950-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0.5|0.27|1|0.7|0.72|11|104|692
chr1_4 exon 3202585 3202822 3202585 ID=Msa0143950-mRNA-1:exon:1366;Parent=Msa0143950-mRNA-1
chr1_4 exon 3203826 3204035 3203826 ID=Msa0143950-mRNA-1:exon:1367;Parent=Msa0143950-mRNA-1
chr1_4 exon 3204103 3204290 3204103 ID=Msa0143950-mRNA-1:exon:1368;Parent=Msa0143950-mRNA-1
chr1_4 exon 3204909 3205074 3204909 ID=Msa0143950-mRNA-1:exon:1369;Parent=Msa0143950-mRNA-1
chr1_4 exon 3205174 3205351 3205174 ID=Msa0143950-mRNA-1:exon:1370;Parent=Msa0143950-mRNA-1
chr1_4 exon 3208059 3208285 3208059 ID=Msa0143950-mRNA-1:exon:1371;Parent=Msa0143950-mRNA-1
chr1_4 exon 3210425 3210634 3210425 ID=Msa0143950-mRNA-1:exon:1372;Parent=Msa0143950-mRNA-1
chr1_4 exon 3210760 3210929 3210760 ID=Msa0143950-mRNA-1:exon:1373;Parent=Msa0143950-mRNA-1
chr1_4 exon 3211098 3211229 3211098 ID=Msa0143950-mRNA-1:exon:1374;Parent=Msa0143950-mRNA-1
chr1_4 exon 3211260 3211362 3211260 ID=Msa0143950-mRNA-1:exon:1375;Parent=Msa0143950-mRNA-1
chr1_4 exon 3211493 3211853 3211493 ID=Msa0143950-mRNA-1:exon:1376;Parent=Msa0143950-mRNA-1
chr1_4 CDS 3202585 3202822 3202585 ID=Msa0143950-mRNA-1:cds;Parent=Msa0143950-mRNA-1
chr1_4 CDS 3203826 3204035 3203826 ID=Msa0143950-mRNA-1:cds;Parent=Msa0143950-mRNA-1
chr1_4 CDS 3204103 3204290 3204103 ID=Msa0143950-mRNA-1:cds;Parent=Msa0143950-mRNA-1
chr1_4 CDS 3204909 3205074 3204909 ID=Msa0143950-mRNA-1:cds;Parent=Msa0143950-mRNA-1
chr1_4 CDS 3205174 3205351 3205174 ID=Msa0143950-mRNA-1:cds;Parent=Msa0143950-mRNA-1
chr1_4 CDS 3208059 3208285 3208059 ID=Msa0143950-mRNA-1:cds;Parent=Msa0143950-mRNA-1
chr1_4 CDS 3210425 3210634 3210425 ID=Msa0143950-mRNA-1:cds;Parent=Msa0143950-mRNA-1
chr1_4 CDS 3210760 3210929 3210760 ID=Msa0143950-mRNA-1:cds;Parent=Msa0143950-mRNA-1
chr1_4 CDS 3211098 3211229 3211098 ID=Msa0143950-mRNA-1:cds;Parent=Msa0143950-mRNA-1
chr1_4 CDS 3211260 3211362 3211260 ID=Msa0143950-mRNA-1:cds;Parent=Msa0143950-mRNA-1
chr1_4 CDS 3211493 3211749 3211493 ID=Msa0143950-mRNA-1:cds;Parent=Msa0143950-mRNA-1
chr1_4 three_prime_UTR 3211750 3211853 3211750 ID=Msa0143950-mRNA-1:three_prime_utr;Parent=Msa0143950-mRNA-1
Gene Sequence

>Msa0143950

ATGTTTCATATATCAAGTGTATCATTTTTTGTGGTGTTATCTATAGCTACTACCACAGTGATTGAAAGTAGCAATAGTGAGTGCAATTTCCCTGCAATCTTCAACTTTGGTGACTCAAACTCAGACACTGGTGGCTTGGCTGCTTCCCTTCAAGCACCAACGCCACCATATGGAGAGACTTATTTCCACAGACCTAATGGGAGGTACTCTGATGGCCGTCTAATTGTCGATTTCATTGCTCAAAGTTTTGGACTCCCTTATCTAAGCGCATATCTTGATTCTTTGGGGACCAATTTTTCACATGGTGCAAACTTTGCAACATCAGCATCAACAATTAGACCCCCACCTAGTATTATACCTCAGGGTGGATACAGTCCTTTCTACCTTGATGTCCAATACACTCAATTCAGAGATTTCAAACCTAGAACACAATTCATTAGACAACAAGACATGGTTTACTTTGTAAGAGGATTATTTGCAAGCTTGATGCCCAAGGAAGAGTATTTCTCTAAGGCTTTGTACACATTTGATATTGGTCAAAATGATCTTGGTGCTGGCTTTTTTGGAAACATGACTATACAACAAGTAAATGCTTCTGTGCCAGAGATAATCAATAGTTTCTCCAAAAATATTAAGGATGAAAATGGTTGTGCAAAGCAATATAATGAAGTAGCACAATATTTCAATCATAAGTTGAAGGAAGCTGTCTTTAAACTTCGTGATGATCTTCCTTTAGCTGCAATCACATATGTAGATATCTACTCTGTTAAATATTCCCTTTTTAACAACCCAAAAAAATATGGATTTGAGCATCACCTAGTTGTTTGTTGTGGCTATGGAGGAGAGTATAATTATAGCAATAGTGTTGGATGTGGAGGAACCATAGAGGTCAATGGTACTCAAATTTTTGTAGGTTCATGTGAAAGACCATCTGCAAGAGTGAATTGGGATGGAATTCATTACACTGAAGCAGCTAGCAAGCACATGTCACTTGTGTATTTGATTGTGCTTATTTTATGTTCTACACCCCCAATATTTGCTACAAAGAATTGTGATTTTCCTGCAATATTTAACTTTGGTGCTTCAAATGCTGATACTGGTGGTTTGGCTGCTGCCTTTCAAGCACTTCAGTTGCCAAATGGAGAGACTTTTTTCAATAGATCAACTGGAAGATTTTCTGATGGCCGAATCATTCTTGATTTCATAGCACAAAGCTTTGGACTTCCCTACCTAAGTCCATATCTTAATTCTCTAGGATCAAACTTCACACATGGTGCAAACTTTGCAACAGCAGGGTCAACAATCAAAATTCCTAATAGTATTATACCCAATGGAATGTTTAGTCCATTTTCCCTTCAAATTCAGTACAATCAATTCAAAGATTTCATACCAAAAGCAAAATTCATTAGAGATCAAGGAGGTGTATTTGCAACATTGATCCCCAAAGAAGATTATTATTCCAAAGCCTTATACACATTTGATATTGGTCAAAATGATCTTACTGCTGGTTTTTTTGGTAATAAGACTATACAACAAGTCAACGATACTATGCCCGATATAGTAAAGAATTTTATAGAGAATATCAAGAATATATACAAATTAGGGGCCAGGTCATTTTGGATACACAACACTGGACCAATTGGATGTGTGCCTTTAATTTTGGCCAATTTTCCATATGCTATAAAGGATAGCCAAGGTTGTGCAAAGCAATACAATGAAGAAGCCCTAGCTCAACTTCGTGTGGATCTTCCACTAGCTGCAATCACATATGTTGATATCTACTCTCCTAAGTACTCTCTTTTCCAAAATCCAAAAAAATACGGATTTGAGCTACCACATGTGGCATGTTGTGGCTATGGAGGAGAGTATAACTATAACATTCGTGCTAGATGTGGAGAAATCATAAACATAAATGGTACAAACATTGTTGTGGGTTCATGTAAAAAACCATCTACTAGAATAATATGGGATGGTACACATTACACAGAGGCAGCTAACAAGATTGTCTTTGATCAAATCTCTACTGGAGCTTTTACAGATCCTTCCATTCCACTAAATAGGGCATGTTACAAAAAGTGA
Protein sequence

>Msa0143950

MFHISSVSFFVVLSIATTTVIESSNSECNFPAIFNFGDSNSDTGGLAASLQAPTPPYGETYFHRPNGRYSDGRLIVDFIAQSFGLPYLSAYLDSLGTNFSHGANFATSASTIRPPPSIIPQGGYSPFYLDVQYTQFRDFKPRTQFIRQQDMVYFVRGLFASLMPKEEYFSKALYTFDIGQNDLGAGFFGNMTIQQVNASVPEIINSFSKNIKDENGCAKQYNEVAQYFNHKLKEAVFKLRDDLPLAAITYVDIYSVKYSLFNNPKKYGFEHHLVVCCGYGGEYNYSNSVGCGGTIEVNGTQIFVGSCERPSARVNWDGIHYTEAASKHMSLVYLIVLILCSTPPIFATKNCDFPAIFNFGASNADTGGLAAAFQALQLPNGETFFNRSTGRFSDGRIILDFIAQSFGLPYLSPYLNSLGSNFTHGANFATAGSTIKIPNSIIPNGMFSPFSLQIQYNQFKDFIPKAKFIRDQGGVFATLIPKEDYYSKALYTFDIGQNDLTAGFFGNKTIQQVNDTMPDIVKNFIENIKNIYKLGARSFWIHNTGPIGCVPLILANFPYAIKDSQGCAKQYNEEALAQLRVDLPLAAITYVDIYSPKYSLFQNPKKYGFELPHVACCGYGGEYNYNIRARCGEIININGTNIVVGSCKKPSTRIIWDGTHYTEAANKIVFDQISTGAFTDPSIPLNRACYKK*