AlfalfaGEDB | Msa1206330

M. sativa cultivar zhongmu-4 / Msa1206330

KEGG: K03549
GO: GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0008150 GO:0008324 GO:0009674 GO:0009987 GO:0010107 GO:0015075 GO:0015077 GO:0015079 GO:0015081 GO:0015291 GO:0015293 GO:0015294 GO:0015318 GO:0015370 GO:0015672 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0035725 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071804 GO:0071805 GO:0098655 GO:0098660 GO:0098662
PFAM: PF02705.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1206330	XP_013457577.1	90.155	772	51	4	1	754	51	815	0.0	1407

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1206330	sp\|Q9M7K4\|POT5_ARATH	57.235	774	276	8	2	754	46	785	0.0	891

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa1206330	-0.818252	2.159680e-52	-8.615850e-47
Msa0000800	Msa1206330	0.803035	4.225074e-49	-8.615850e-47
Msa0001040	Msa1206330	-0.816174	6.334695e-52	-8.615850e-47
Msa0001510	Msa1206330	-0.851525	8.383340e-61	-8.615850e-47
Msa0002690	Msa1206330	-0.851933	6.424055e-61	-8.615850e-47
Msa0002700	Msa1206330	-0.851400	9.094560e-61	-8.615850e-47
Msa0003340	Msa1206330	-0.814855	1.245838e-51	-8.615850e-47
Msa0004180	Msa1206330	-0.869264	3.526787e-66	-8.615850e-47
Msa0004940	Msa1206330	0.812390	4.343290e-51	-8.615850e-47
Msa0004990	Msa1206330	0.814898	1.218365e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1206330	MtrunA17_Chr4g0055471	90.155	772	51	4	1	754	51	815	1407
Msa1206330	MtrunA17_Chr8g0380281	60.232	777	267	7	2	754	24	782	928
Msa1206330	MtrunA17_Chr7g0268981	50.387	776	306	6	2	754	54	773	793
Msa1206330	MtrunA17_Chr8g0344561	58.882	608	184	7	165	754	13	572	723
Msa1206330	MtrunA17_Chr8g0365001	45.362	787	367	9	4	754	81	840	675
Msa1206330	MtrunA17_Chr2g0279131	42.784	776	403	7	4	754	90	849	637
Msa1206330	MtrunA17_Chr3g0128831	43.284	804	376	14	6	752	12	792	629
Msa1206330	MtrunA17_Chr6g0451081	41.977	779	398	11	11	754	17	776	629
Msa1206330	MtrunA17_Chr5g0429991	43.061	771	382	8	17	754	103	849	619
Msa1206330	MtrunA17_Chr4g0052401	44.751	762	375	9	15	754	50	787	617

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1206330	AT4G13420.1	57.235	774	276	8	2	754	46	785	891
Msa1206330	AT1G60160.1	45.408	773	376	8	5	754	78	827	697
Msa1206330	AT5G14880.1	43.878	784	391	11	4	752	10	779	634
Msa1206330	AT2G40540.1	42.529	783	410	10	6	752	14	792	628
Msa1206330	AT2G40540.5	42.529	783	410	10	6	752	14	792	628
Msa1206330	AT2G40540.4	42.529	783	410	10	6	752	14	792	628
Msa1206330	AT2G40540.2	42.529	783	410	10	6	752	14	792	628
Msa1206330	AT2G40540.3	42.529	783	410	10	6	752	14	792	628
Msa1206330	AT4G33530.1	42.308	780	402	8	4	754	95	855	622
Msa1206330	AT1G31120.1	43.857	757	375	9	23	754	65	796	612

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Find 144 sgRNAs with CRISPR-Local

Find 505 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGCTGAAAGATAGAA+AGG	0.493465	8_1:-63302493	Msa1206330:five_prime_UTR
AACAGATCGAGTGAGCATAG+AGG	0.593649	8_1:-63302547	None:intergenic
AACGAAATGGTAAGGAAGGA+TGG	0.546490	8_1:-63296217	Msa1206330:CDS
AAGAACATGTAGTTGATCTC+TGG	0.449490	8_1:+63295035	None:intergenic
AAGAACGTAGCTAGTACAAT+TGG	0.440233	8_1:+63294688	None:intergenic
AAGATATATTAGGTAAAGAA+GGG	0.542373	8_1:-63294147	Msa1206330:CDS
AAGGAAGGATGGCTATCACT+AGG	0.622756	8_1:-63296206	Msa1206330:CDS
AAGGGAGTGGTATATATGAT+AGG	0.453426	8_1:-63293950	Msa1206330:CDS
AAGTAATCAACAATATATTT+TGG	0.188421	8_1:+63296242	None:intergenic
AATAGAATAATCCCAAGTAA+AGG	0.545122	8_1:-63294100	Msa1206330:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAGCTGAAAGATAGAA+AGG	-	chr8_1:63293837-63293856	Msa1206330:CDS	30.0%
AAAAATATGCATGAAGACCT+TGG	+	chr8_1:63293941-63293960	None:intergenic	30.0%
CAAAGCATAGGAATTGTATA+TGG	-	chr8_1:63294097-63294116	Msa1206330:CDS	30.0%
GGAATTGTATATGGTGATAT+TGG	-	chr8_1:63294106-63294125	Msa1206330:CDS	30.0%
TATGCAAGTACTTTCACTAA+AGG	-	chr8_1:63294148-63294167	Msa1206330:CDS	30.0%
ATGCAAGTACTTTCACTAAA+GGG	-	chr8_1:63294149-63294168	Msa1206330:CDS	30.0%
AAAAACAACGATGACATTCT+TGG	-	chr8_1:63294175-63294194	Msa1206330:CDS	30.0%
ACAGTGTGAGAATTTAATAG+TGG	-	chr8_1:63294600-63294619	Msa1206330:CDS	30.0%
ACTTCAATGACAAGTTTGTA+AGG	+	chr8_1:63294647-63294666	None:intergenic	30.0%
TTCAAAGATTGACCAAGTTT+CGG	-	chr8_1:63294697-63294716	Msa1206330:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	63293790	63302562	63293790	ID=Msa1206330;Name=Msa1206330
chr8_1	mRNA	63293790	63302562	63293790	ID=Msa1206330-mRNA-1;Parent=Msa1206330;Name=Msa1206330-mRNA-1;_AED=0.05;_eAED=0.05;_QI=129\|0.87\|0.66\|1\|1\|0.77\|9\|0\|754
chr8_1	exon	63293790	63294883	63293790	ID=Msa1206330-mRNA-1:exon:20549;Parent=Msa1206330-mRNA-1
chr8_1	exon	63294973	63295176	63294973	ID=Msa1206330-mRNA-1:exon:20548;Parent=Msa1206330-mRNA-1
chr8_1	exon	63295682	63295796	63295682	ID=Msa1206330-mRNA-1:exon:20547;Parent=Msa1206330-mRNA-1
chr8_1	exon	63296047	63296099	63296047	ID=Msa1206330-mRNA-1:exon:20546;Parent=Msa1206330-mRNA-1
chr8_1	exon	63296183	63296443	63296183	ID=Msa1206330-mRNA-1:exon:20545;Parent=Msa1206330-mRNA-1
chr8_1	exon	63296581	63296622	63296581	ID=Msa1206330-mRNA-1:exon:20544;Parent=Msa1206330-mRNA-1
chr8_1	exon	63297994	63298242	63297994	ID=Msa1206330-mRNA-1:exon:20543;Parent=Msa1206330-mRNA-1
chr8_1	exon	63302066	63302288	63302066	ID=Msa1206330-mRNA-1:exon:20542;Parent=Msa1206330-mRNA-1
chr8_1	exon	63302410	63302562	63302410	ID=Msa1206330-mRNA-1:exon:20541;Parent=Msa1206330-mRNA-1
chr8_1	five_prime_UTR	63302434	63302562	63302434	ID=Msa1206330-mRNA-1:five_prime_utr;Parent=Msa1206330-mRNA-1
chr8_1	CDS	63302410	63302433	63302410	ID=Msa1206330-mRNA-1:cds;Parent=Msa1206330-mRNA-1
chr8_1	CDS	63302066	63302288	63302066	ID=Msa1206330-mRNA-1:cds;Parent=Msa1206330-mRNA-1
chr8_1	CDS	63297994	63298242	63297994	ID=Msa1206330-mRNA-1:cds;Parent=Msa1206330-mRNA-1
chr8_1	CDS	63296581	63296622	63296581	ID=Msa1206330-mRNA-1:cds;Parent=Msa1206330-mRNA-1
chr8_1	CDS	63296183	63296443	63296183	ID=Msa1206330-mRNA-1:cds;Parent=Msa1206330-mRNA-1
chr8_1	CDS	63296047	63296099	63296047	ID=Msa1206330-mRNA-1:cds;Parent=Msa1206330-mRNA-1
chr8_1	CDS	63295682	63295796	63295682	ID=Msa1206330-mRNA-1:cds;Parent=Msa1206330-mRNA-1
chr8_1	CDS	63294973	63295176	63294973	ID=Msa1206330-mRNA-1:cds;Parent=Msa1206330-mRNA-1
chr8_1	CDS	63293790	63294883	63293790	ID=Msa1206330-mRNA-1:cds;Parent=Msa1206330-mRNA-1

Gene Sequence

>Msa1206330

ATGAATGCAAACCACAATTCCAAGGTGGGTTGGAGCGTGACATTGAGTTTGGCATTTCAAAGCATAGGAATTGTATATGGTGATATTGGTACATCTCCACTTTATGTGTATGCAAGTACTTTCACTAAAGGGATTAAAAACAACGATGACATTCTTGGAGTCTTGTCTCTCATCATCTACACTATTGTGCTCATACCCATGATCAAATACGTTTTCATTGTCTTATGGGCCAATGACAATGGCAATGGTGGAGCGTTTGCATTATATTCGTTGATATGTAGGCATATAAAGATGAGTTTGGCTCCCAATCAACAACCTGAAGACATGGAACTCTCTAATTACAAACTAGAAATACCATCTAGCCAGCAGAAAAGAGCCCATAAATTGAAACAAAAGCTTGAAAATAGTCATTTTTCACGGATTATACTTTTACTTCTAGCTATAATGGGAACTGCCATGGTCATAGGTGACGGGATTCTCACTCCATCTATTTCAGTGCTATCTGCAGTGAGTGGGATCAGTACATCACTGGGTCAAAATGCTGTTGTGGGCATCACCGTAGCAATTTTGGTTGTCCTATTTTGTATGCAACGATTTGGTACTGATAAAGTGGGAGTCACATTTGCTCCAGTTATTTTAATATGGTTTACATTTATTGGTGGTATTGGTCTCTACAATTTTTTCAAATATGACATTGGAGTATTAAAAGCTTTTAATCCAAAATATATTGTTGATTACTTCAAACGAAATGGTAAGGAAGGATGGCTATCACTAGGTGGAGTCTTTTTATGCATAACAGGATCTGAGGCCATGTTTGCTGATTTGGGTCACTTTAGTGTACGAGCCATTCAAATTAGCTTTTCTTTTGTTACATTTCCTGCAATATTGATAGCATATATTGGGCAAGCAGCATTTCTAAGAAAGTTTCCTGAAAAAGTGGGGAATACATTCTATGACAGTATACCAGCTAGTCAAGCAATGATTTCAGGAGCATTTTCCATTATATCACAAGCCCTTAGTCTAGGTTGTTTCCCTAGAGTTAAGGTTGTTCATACTTCAACTAAGCATCAAGGTCAAGTTTATATTCCAGAGATCAACTACATGTTCTTGATTGGATGTATAGTAGTATGTGTTGCCTTCAAGACCACAGAAAATATCAGTCATGCCTATGGGATTGCTGTTATTGGTGATATGATGATCTCAACAACACTAGTTTCACTTATAATGCTTGTTATATGGAAGAGGAGTTTATGGATGGTCATCCTTTTCTTTTTTGGATTTGGTAGCATAGAGCTTCTTTATTTCTCAGCTCAAATAACCAAGTTCACAAAAGGAGGATATTTTCCAATTGTACTAGCTACGTTCTTGACAATAATTATGGGAATTTGGCATTATGTTCACAAAGAAAGATACATGTTTGAACTCAAGAACAAAGTTTCTACCGAGTATTTGAAGGAATTGGCGAACAACACAAATGTACACAGAGTGCCTGGAATTGGACTTTTGTATTCCGAGCTTGTACAAGGAATTCCTCCAATATTTCCTCACTTTATAGCTAGTGTACCATCCATTCATTCAGTTGTTGTGTTCGTCTCTATCAAGACAATTCCGGTTAATAGAGTTGCTTTGGAAGAGAGGTTTTTGTTTCGACAAGTGGAACCAAGAGAGTATAGAATATTTCGATGTGTTGCAAGGCGCGGTTACAATGATACGCTTGGGAATCCCGTGGAATTTGAGTCACAATTAATACAAAATCTCAAGGAATTTATTCAACAAGAGAATTTTATGCTTGAGGTTAATGAAGGTGCTGCTACTAATAATGTAACAACTACAACAAGTGAACAATTAGTAGTACCTATTTCCACTAATGAGAGTGATCAAATGGAAGATATATTAGGTAAAGAAGGGAAATCAGGGTCTAATAATTCTTCTAATAGAATAATCCCAAGTAAAGGTGCGTCTCATGTATCATCAGATTCCATTAGATCATTGCCTGCAAGTGTGAGAAAATCATCAAATTTCTATGAACCTATCATTCAAGGACCTGAAGAGGAAATAAAGTTTATAGATAAAGCAACAGAAAAGGGAGTGGTATATATGATAGGTGAAGCAGAGGTAGTAGCTCACCCAAATTCTTCCGTTTTGAACAAGATTGTTGTCAACTATGCTTATAGCTTCTTGCGCAAGAACTTTAGACAGGGAGAAGATTCTATAGCAATCCCACGCAAGAGACTTCTTAAAGTTGGAATGACATATGAAATATGA

Protein sequence

>Msa1206330

MNANHNSKVGWSVTLSLAFQSIGIVYGDIGTSPLYVYASTFTKGIKNNDDILGVLSLIIYTIVLIPMIKYVFIVLWANDNGNGGAFALYSLICRHIKMSLAPNQQPEDMELSNYKLEIPSSQQKRAHKLKQKLENSHFSRIILLLLAIMGTAMVIGDGILTPSISVLSAVSGISTSLGQNAVVGITVAILVVLFCMQRFGTDKVGVTFAPVILIWFTFIGGIGLYNFFKYDIGVLKAFNPKYIVDYFKRNGKEGWLSLGGVFLCITGSEAMFADLGHFSVRAIQISFSFVTFPAILIAYIGQAAFLRKFPEKVGNTFYDSIPASQAMISGAFSIISQALSLGCFPRVKVVHTSTKHQGQVYIPEINYMFLIGCIVVCVAFKTTENISHAYGIAVIGDMMISTTLVSLIMLVIWKRSLWMVILFFFGFGSIELLYFSAQITKFTKGGYFPIVLATFLTIIMGIWHYVHKERYMFELKNKVSTEYLKELANNTNVHRVPGIGLLYSELVQGIPPIFPHFIASVPSIHSVVVFVSIKTIPVNRVALEERFLFRQVEPREYRIFRCVARRGYNDTLGNPVEFESQLIQNLKEFIQQENFMLEVNEGAATNNVTTTTSEQLVVPISTNESDQMEDILGKEGKSGSNNSSNRIIPSKGASHVSSDSIRSLPASVRKSSNFYEPIIQGPEEEIKFIDKATEKGVVYMIGEAEVVAHPNSSVLNKIVVNYAYSFLRKNFRQGEDSIAIPRKRLLKVGMTYEI*