AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0715250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0715250 MtrunA17_Chr5g0402581 95.706 326 14 0 1 326 1 326 0.0 642
Msa0715250 MtrunA17_Chr5g0402571 93.252 326 22 0 1 326 1 326 0.0 630
Msa0715250 MtrunA17_Chr1g0175561 51.070 327 154 5 4 326 2 326 1.91e-107 316
Msa0715250 MtrunA17_Chr3g0129051 52.025 321 142 4 11 326 9 322 2.94e-107 315
Msa0715250 MtrunA17_Chr4g0070951 52.012 323 144 5 9 326 13 329 3.05e-107 316
Msa0715250 MtrunA17_Chr7g0258811 50.920 326 155 4 5 326 47 371 9.51e-107 316
Msa0715250 MtrunA17_Chr2g0320071 51.097 319 147 3 9 326 7 317 1.65e-105 311
Msa0715250 MtrunA17_Chr5g0432441 49.538 325 153 3 6 326 9 326 7.62e-105 310
Msa0715250 MtrunA17_Chr7g0244451 50.000 322 149 4 6 326 6 316 1.18e-104 309
Msa0715250 MtrunA17_Chr2g0320101 51.746 315 140 4 16 326 11 317 1.37e-104 308
Msa0715250 MtrunA17_Chr2g0320051 52.848 316 136 5 16 326 11 318 9.84e-104 306
Msa0715250 MtrunA17_Chr2g0292211 51.475 305 144 3 25 326 38 341 2.75e-103 307
Msa0715250 MtrunA17_Chr2g0320061 52.215 316 138 5 16 326 11 318 3.92e-103 305
Msa0715250 MtrunA17_Chr4g0043391 48.182 330 161 5 1 326 1 324 5.02e-102 302
Msa0715250 MtrunA17_Chr4g0038171 49.843 319 150 5 12 326 9 321 7.43e-102 302
Msa0715250 MtrunA17_Chr4g0038161 48.607 323 157 4 7 326 4 320 1.64e-101 301
Msa0715250 MtrunA17_Chr4g0038151 48.765 324 156 5 7 326 4 321 1.70e-101 301
Msa0715250 MtrunA17_Chr2g0299691 51.325 302 138 4 31 326 60 358 4.19e-101 301
Msa0715250 MtrunA17_Chr2g0292241 50.492 305 147 3 25 326 27 330 5.05e-101 301
Msa0715250 MtrunA17_Chr5g0438021 47.866 328 160 4 3 326 5 325 8.24e-101 299
Msa0715250 MtrunA17_Chr2g0292251 50.164 305 148 3 25 326 26 329 1.82e-100 300
Msa0715250 MtrunA17_Chr7g0244461 48.758 322 153 4 6 326 2 312 3.62e-100 297
Msa0715250 MtrunA17_Chr2g0292091 48.466 326 164 3 4 326 1 325 5.44e-100 298
Msa0715250 MtrunA17_Chr2g0292181 50.164 305 148 3 25 326 36 339 4.15e-99 296
Msa0715250 MtrunA17_Chr2g0320091 48.903 319 152 3 12 326 7 318 4.67e-99 295
Msa0715250 MtrunA17_Chr2g0292101 49.843 319 155 4 11 326 10 326 9.92e-99 295
Msa0715250 MtrunA17_Chr3g0114451 48.137 322 154 4 10 326 5 318 1.63e-98 293
Msa0715250 MtrunA17_Chr2g0320031 49.221 321 149 5 12 326 7 319 1.65e-98 293
Msa0715250 MtrunA17_Chr3g0129061 49.226 323 155 3 6 326 7 322 2.55e-98 293
Msa0715250 MtrunA17_Chr5g0404721 51.325 302 144 3 27 326 30 330 5.33e-98 292
Msa0715250 MtrunA17_Chr3g0106921 46.296 324 164 3 6 326 4 320 6.39e-97 289
Msa0715250 MtrunA17_Chr4g0013171 46.201 329 163 5 4 326 1 321 2.63e-96 288
Msa0715250 MtrunA17_Chr8g0372601 49.206 315 155 4 14 326 19 330 3.32e-96 288
Msa0715250 MtrunA17_Chr2g0292291 47.869 305 156 2 25 326 28 332 5.22e-96 288
Msa0715250 MtrunA17_Chr4g0013181 48.667 300 143 4 30 326 62 353 9.59e-96 287
Msa0715250 MtrunA17_Chr2g0292271 47.649 319 159 4 15 326 13 330 1.65e-95 287
Msa0715250 MtrunA17_Chr2g0291751 47.112 329 166 5 5 326 3 330 1.84e-95 286
Msa0715250 MtrunA17_Chr2g0292261 49.180 305 151 3 25 326 27 330 7.01e-95 285
Msa0715250 MtrunA17_Chr3g0129041 48.297 323 158 3 6 326 7 322 3.28e-94 282
Msa0715250 MtrunA17_Chr1g0213061 45.312 320 160 5 14 326 10 321 5.63e-94 282
Msa0715250 MtrunA17_Chr2g0292151 49.180 305 151 3 25 326 27 330 1.18e-93 282
Msa0715250 MtrunA17_Chr4g0013201 48.845 303 146 3 25 326 44 338 3.40e-93 280
Msa0715250 MtrunA17_Chr4g0068621 49.342 304 149 4 25 326 36 336 5.37e-93 280
Msa0715250 MtrunA17_Chr2g0292111 47.541 305 156 3 25 326 27 330 6.82e-92 278
Msa0715250 MtrunA17_Chr4g0013191 48.232 311 151 4 19 326 37 340 7.49e-92 277
Msa0715250 MtrunA17_Chr4g0024121 44.164 317 175 2 11 326 11 326 3.48e-91 275
Msa0715250 MtrunA17_Chr3g0106901 48.125 320 157 3 8 326 12 323 8.68e-91 274
Msa0715250 MtrunA17_Chr1g0155611 50.836 299 143 3 31 326 50 347 1.01e-90 274
Msa0715250 MtrunA17_Chr2g0322861 44.969 318 169 5 11 326 73 386 1.02e-90 276
Msa0715250 MtrunA17_Chr5g0432341 48.457 324 150 10 9 326 9 321 3.64e-88 267
Msa0715250 MtrunA17_Chr5g0432351 48.148 324 151 10 9 326 9 321 8.22e-88 266
Msa0715250 MtrunA17_Chr5g0432331 48.607 323 149 11 10 326 41 352 1.62e-86 264
Msa0715250 MtrunA17_Chr5g0400331 46.602 309 153 5 27 326 26 331 3.91e-86 262
Msa0715250 MtrunA17_Chr7g0224371 47.475 297 146 4 31 326 35 322 4.75e-85 259
Msa0715250 MtrunA17_Chr1g0204011 40.184 326 191 3 1 326 1 322 3.01e-84 257
Msa0715250 MtrunA17_Chr2g0279041 44.545 330 174 4 1 326 1 325 3.23e-84 257
Msa0715250 MtrunA17_Chr4g0013721 45.875 303 159 4 25 326 98 396 5.59e-84 259
Msa0715250 MtrunA17_Chr7g0268501 45.597 318 163 7 11 326 11 320 6.49e-83 253
Msa0715250 MtrunA17_Chr7g0268521 45.597 318 163 7 11 326 11 320 6.49e-83 253
Msa0715250 MtrunA17_Chr4g0076211 42.905 296 160 4 32 326 46 333 4.29e-81 249
Msa0715250 MtrunA17_Chr3g0128061 41.956 317 183 1 11 326 10 326 7.17e-81 248
Msa0715250 MtrunA17_Chr4g0013821 41.379 319 182 4 9 326 10 324 6.52e-80 246
Msa0715250 MtrunA17_Chr1g0188431 39.697 330 180 5 5 326 9 327 6.89e-80 246
Msa0715250 MtrunA17_Chr6g0477071 42.384 302 163 4 25 326 52 342 7.94e-80 246
Msa0715250 MtrunA17_Chr5g0421411 45.936 283 146 5 50 326 4 285 7.97e-80 244
Msa0715250 MtrunA17_Chr5g0405991 42.500 320 176 5 9 326 3 316 1.15e-79 245
Msa0715250 MtrunA17_Chr4g0063671 42.767 318 172 4 14 326 8 320 2.95e-79 244
Msa0715250 MtrunA17_Chr8g0371381 43.046 302 162 5 27 326 26 319 5.66e-79 243
Msa0715250 MtrunA17_Chr2g0296621 42.857 301 162 4 27 326 50 341 6.06e-79 244
Msa0715250 MtrunA17_Chr1g0157051 43.533 317 173 4 9 325 7 317 1.46e-78 242
Msa0715250 MtrunA17_Chr6g0460711 41.824 318 179 5 9 326 3 314 6.84e-78 241
Msa0715250 MtrunA17_Chr6g0467161 43.042 309 162 5 21 326 39 336 6.43e-77 239
Msa0715250 MtrunA17_Chr3g0107881 44.172 326 168 7 7 326 7 324 2.05e-76 237
Msa0715250 MtrunA17_Chr7g0254201 41.830 306 171 4 21 326 14 312 1.24e-75 234
Msa0715250 MtrunA17_Chr1g0148021 40.187 321 186 4 10 326 10 328 2.90e-75 234
Msa0715250 MtrunA17_Chr1g0194151 39.759 332 192 4 1 326 4 333 2.03e-74 232
Msa0715250 MtrunA17_Chr1g0197411 39.628 323 188 6 10 326 9 330 3.49e-72 226
Msa0715250 MtrunA17_Chr6g0467121 42.857 308 162 5 21 326 68 363 8.33e-72 227
Msa0715250 MtrunA17_Chr1g0194271 38.757 338 194 4 1 326 4 340 1.43e-71 225
Msa0715250 MtrunA17_Chr1g0164891 42.105 304 164 5 31 326 93 392 1.78e-71 226
Msa0715250 MtrunA17_Chr2g0278671 41.042 307 171 5 25 326 22 323 3.34e-71 224
Msa0715250 MtrunA17_Chr7g0225221 40.196 306 169 5 26 326 24 320 5.24e-71 223
Msa0715250 MtrunA17_Chr4g0046131 37.647 340 191 6 4 322 3 342 1.83e-69 220
Msa0715250 MtrunA17_Chr5g0432401 42.515 334 134 10 1 325 1 285 1.60e-68 215
Msa0715250 MtrunA17_Chr7g0254231 40.667 300 168 4 27 326 22 311 1.60e-68 216
Msa0715250 MtrunA17_Chr6g0467251 41.234 308 170 4 21 326 30 328 4.64e-68 216
Msa0715250 MtrunA17_Chr2g0279061 46.923 260 129 4 71 326 12 266 1.23e-66 210
Msa0715250 MtrunA17_Chr2g0329641 40.328 305 174 5 26 326 35 335 1.43e-65 209
Msa0715250 MtrunA17_Chr2g0316791 38.182 330 171 6 25 322 74 402 1.47e-64 209
Msa0715250 MtrunA17_Chr4g0072091 40.391 307 171 7 26 326 23 323 1.59e-64 206
Msa0715250 MtrunA17_Chr5g0401431 36.000 325 196 6 11 325 6 328 1.66e-64 206
Msa0715250 MtrunA17_Chr2g0316481 38.182 330 171 6 25 322 74 402 3.21e-64 208
Msa0715250 MtrunA17_Chr8g0364291 36.250 320 200 4 10 326 6 324 8.51e-64 205
Msa0715250 MtrunA17_Chr2g0316831 37.576 330 173 6 25 322 110 438 8.93e-63 206
Msa0715250 MtrunA17_Chr3g0136751 38.957 326 189 6 5 326 3 322 1.53e-62 201
Msa0715250 MtrunA17_Chr2g0316191 36.858 331 175 6 25 322 74 403 2.11e-62 203
Msa0715250 MtrunA17_Chr4g0053871 38.245 319 181 8 10 322 12 320 9.54e-61 197
Msa0715250 MtrunA17_Chr2g0311251 37.237 333 175 8 25 325 9 339 1.63e-60 197
Msa0715250 MtrunA17_Chr2g0311241 34.225 374 171 8 25 325 58 429 5.60e-60 198
Msa0715250 MtrunA17_Chr6g0451571 35.514 321 200 5 10 326 17 334 2.32e-59 193
Msa0715250 MtrunA17_Chr5g0413051 35.783 313 184 6 25 326 71 377 4.99e-58 191
Msa0715250 MtrunA17_Chr4g0075241 35.526 304 189 5 26 326 28 327 2.39e-56 186
Msa0715250 MtrunA17_Chr1g0181511 32.459 305 197 4 25 326 25 323 4.56e-48 164
Msa0715250 MtrunA17_Chr4g0074851 32.895 304 193 5 27 326 32 328 3.69e-46 159
Msa0715250 MtrunA17_Chr1g0181431 32.131 305 198 4 25 326 25 323 6.98e-46 158
Msa0715250 MtrunA17_Chr1g0181481 33.117 308 191 5 25 326 25 323 1.42e-45 157
Msa0715250 MtrunA17_Chr4g0004591 31.348 319 159 5 27 325 77 355 1.38e-44 155
Msa0715250 MtrunA17_Chr2g0316811 37.826 230 124 4 25 236 48 276 3.47e-44 154
Msa0715250 MtrunA17_Chr2g0292281 40.952 210 110 4 120 326 18 216 2.03e-41 144
Msa0715250 MtrunA17_Chr3g0114491 58.559 111 46 0 26 136 17 127 4.24e-41 140
Msa0715250 MtrunA17_Chr3g0114461 42.632 190 99 4 139 326 11 192 1.12e-40 140
Msa0715250 MtrunA17_Chr2g0316141 33.681 288 138 8 73 326 11 279 7.61e-39 139
Msa0715250 MtrunA17_Chr2g0316181 33.681 288 138 8 73 326 11 279 7.61e-39 139
Msa0715250 MtrunA17_Chr5g0432321 44.000 125 60 4 148 271 17 132 7.80e-23 92.0
Msa0715250 MtrunA17_Chr6g0468731 62.319 69 22 2 66 134 22 86 4.00e-20 83.6
Msa0715250 MtrunA17_Chr2g0316771 30.636 173 91 2 179 322 10 182 6.09e-20 85.9
Msa0715250 MtrunA17_Chr1g0181491 40.000 110 64 2 25 134 10 117 7.17e-20 84.7
Msa0715250 MtrunA17_Chr3g0104101 34.507 142 87 4 190 326 9 149 1.34e-18 81.3
Msa0715250 MtrunA17_Chr7g0254181 40.426 94 54 1 99 192 31 122 6.83e-17 76.6
Msa0715250 MtrunA17_Chr5g0432361 47.253 91 45 2 237 325 19 108 2.27e-16 73.9
Msa0715250 MtrunA17_Chr7g0268491 43.434 99 54 2 228 326 1 97 2.75e-16 73.2
Msa0715250 MtrunA17_Chr1g0181501 30.769 195 116 6 140 326 6 189 1.16e-15 74.3
Msa0715250 MtrunA17_Chr1g0196191 54.286 70 31 1 65 134 23 91 3.51e-15 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0715250 AT1G49570.1 62.706 303 110 2 23 322 44 346 2.18e-130 376
Msa0715250 AT5G19890.1 53.517 327 142 4 4 326 7 327 2.09e-114 334
Msa0715250 AT5G06730.1 54.754 305 134 3 25 326 31 334 7.31e-113 332
Msa0715250 AT5G06720.1 52.131 305 142 3 25 326 30 333 2.13e-105 311
Msa0715250 AT4G36430.1 48.515 303 153 3 26 326 29 330 2.33e-100 299
Msa0715250 AT2G18150.1 45.758 330 165 4 10 326 8 336 3.03e-99 296
Msa0715250 AT2G38390.1 49.367 316 155 4 15 326 19 333 3.40e-99 296
Msa0715250 AT5G05340.1 47.231 307 153 3 22 326 25 324 2.19e-97 291
Msa0715250 AT2G18140.1 48.013 302 154 3 27 326 35 335 1.90e-95 286
Msa0715250 AT1G44970.1 50.820 305 146 3 25 326 43 346 7.42e-95 285
Msa0715250 AT2G38380.1 48.125 320 161 4 11 326 15 333 2.64e-93 281
Msa0715250 AT1G14550.1 45.483 321 164 5 10 326 8 321 2.91e-93 280
Msa0715250 AT5G19880.1 47.401 327 165 5 6 326 4 329 4.28e-93 280
Msa0715250 AT3G32980.1 46.037 328 171 4 4 326 8 334 2.07e-92 279
Msa0715250 AT1G14540.1 46.519 316 157 5 16 326 7 315 2.36e-91 275
Msa0715250 AT3G49120.1 45.820 323 169 4 9 326 14 335 2.85e-91 276
Msa0715250 AT3G50990.1 46.440 323 167 4 9 326 20 341 1.61e-90 274
Msa0715250 AT5G15180.1 46.372 317 163 6 13 326 17 329 1.55e-89 271
Msa0715250 AT5G58400.1 44.578 332 171 4 1 326 1 325 1.97e-89 271
Msa0715250 AT3G49110.1 46.012 326 164 5 9 326 15 336 2.55e-89 271
Msa0715250 AT4G08780.1 47.419 310 151 5 25 326 22 327 3.38e-89 271
Msa0715250 AT3G01190.1 46.605 324 166 6 5 326 3 321 9.56e-89 269
Msa0715250 AT4G16270.1 48.013 302 152 4 27 326 50 348 2.62e-88 268
Msa0715250 AT1G68850.1 43.963 323 173 6 11 326 14 335 3.94e-88 268
Msa0715250 AT5G58390.1 46.395 319 161 3 11 326 5 316 4.07e-88 267
Msa0715250 AT4G08770.1 47.604 313 152 5 22 326 19 327 8.76e-88 267
Msa0715250 AT3G03670.1 44.860 321 168 5 10 326 6 321 1.41e-87 266
Msa0715250 AT5G66390.1 43.807 331 175 5 6 326 4 333 2.66e-87 266
Msa0715250 AT1G05260.1 43.465 329 179 7 1 326 1 325 2.52e-86 263
Msa0715250 AT2G35380.1 43.402 341 167 6 4 326 3 335 3.57e-84 258
Msa0715250 AT5G51890.1 40.566 318 186 2 9 326 8 322 2.99e-83 254
Msa0715250 AT3G21770.1 44.333 300 163 4 25 322 27 324 3.63e-83 255
Msa0715250 AT4G11290.1 43.421 304 170 2 25 326 23 326 1.65e-82 253
Msa0715250 AT2G22420.1 43.302 321 173 5 8 326 6 319 5.34e-82 252
Msa0715250 AT5G17820.1 41.640 317 175 4 10 326 7 313 8.73e-82 251
Msa0715250 AT5G64120.1 42.154 325 175 5 9 326 10 328 5.21e-81 249
Msa0715250 AT5G17820.2 41.640 317 175 4 10 326 60 366 1.71e-80 249
Msa0715250 AT1G05240.1 43.333 300 162 6 27 322 26 321 1.37e-78 243
Msa0715250 AT1G05250.1 43.333 300 162 6 27 322 26 321 1.37e-78 243
Msa0715250 AT5G42180.1 41.195 318 182 3 8 325 4 316 1.65e-77 240
Msa0715250 AT4G33420.1 41.830 306 167 4 21 326 31 325 2.94e-77 239
Msa0715250 AT4G33420.2 41.830 306 167 4 21 326 78 372 1.71e-76 239
Msa0715250 AT2G41480.1 42.154 325 176 7 8 326 10 328 2.38e-76 237
Msa0715250 AT4G25980.1 40.391 307 174 4 25 326 24 326 2.30e-74 232
Msa0715250 AT5G39580.1 42.006 319 175 6 9 326 10 319 2.69e-73 229
Msa0715250 AT4G26010.1 40.881 318 168 7 12 326 9 309 3.45e-73 229
Msa0715250 AT1G30870.1 42.244 303 164 5 27 326 51 345 3.45e-73 230
Msa0715250 AT4G33870.1 37.538 333 172 4 25 322 66 397 4.77e-73 231
Msa0715250 AT4G26010.2 40.881 318 168 7 12 326 37 337 6.90e-73 229
Msa0715250 AT3G49960.1 39.877 326 185 7 9 326 7 329 3.49e-71 224
Msa0715250 AT2G39040.1 42.532 308 168 7 26 326 45 350 4.05e-71 224
Msa0715250 AT2G18980.1 39.752 322 181 7 11 326 9 323 5.66e-71 223
Msa0715250 AT4G37530.1 41.424 309 176 4 22 326 22 329 1.24e-70 223
Msa0715250 AT1G71695.1 39.610 308 174 5 23 326 40 339 2.88e-70 223
Msa0715250 AT2G24800.1 43.322 307 163 5 25 326 29 329 5.08e-70 221
Msa0715250 AT5G67400.1 40.065 307 177 5 25 326 25 329 5.63e-69 218
Msa0715250 AT1G77100.1 39.264 326 180 8 9 326 4 319 1.58e-68 217
Msa0715250 AT5G64100.1 40.397 302 169 5 28 326 38 331 4.73e-68 216
Msa0715250 AT5G47000.1 36.533 323 194 5 10 326 13 330 1.38e-67 215
Msa0715250 AT3G28200.1 38.961 308 172 4 25 326 19 316 1.38e-67 214
Msa0715250 AT5G24070.1 40.064 312 178 5 19 326 29 335 1.39e-67 215
Msa0715250 AT4G17690.1 39.274 303 175 4 27 326 26 322 5.16e-67 213
Msa0715250 AT5G64110.1 40.803 299 168 6 31 326 38 330 7.41e-67 213
Msa0715250 AT4G31760.1 40.248 323 179 7 11 326 11 326 7.76e-67 213
Msa0715250 AT4G37520.1 38.907 311 175 5 25 326 25 329 1.25e-66 212
Msa0715250 AT2G34060.1 36.795 337 195 6 4 323 8 343 4.44e-66 211
Msa0715250 AT5G14130.1 40.065 307 173 6 25 326 30 330 6.67e-66 211
Msa0715250 AT4G30170.1 38.387 310 178 7 23 326 23 325 1.02e-65 210
Msa0715250 AT5G14130.2 38.602 329 188 7 6 326 49 371 2.46e-65 210
Msa0715250 AT2G43480.1 39.934 303 172 6 28 326 39 335 1.05e-64 207
Msa0715250 AT4G37520.2 38.585 311 173 6 25 326 25 326 1.47e-64 207
Msa0715250 AT1G34510.1 38.050 318 181 7 10 326 7 309 5.11e-63 202
Msa0715250 AT5G40150.1 37.013 308 179 4 25 326 30 328 1.60e-61 199
Msa0715250 AT4G37530.2 42.146 261 146 4 22 278 22 281 2.03e-59 192
Msa0715250 AT2G35380.2 43.254 252 121 5 89 326 4 247 2.53e-59 191
Msa0715250 AT5G22410.1 35.890 326 197 8 4 324 5 323 2.26e-58 191
Msa0715250 AT1G24110.1 36.970 330 182 9 12 326 4 322 2.11e-55 183
Msa0715250 AT4G21960.1 34.211 304 189 5 27 326 31 327 5.35e-50 169
Msa0715250 AT2G37130.1 34.740 308 185 7 26 326 29 327 1.26e-48 166
Msa0715250 AT2G37130.2 34.868 304 182 7 30 326 2 296 1.87e-48 164
Msa0715250 AT4G25980.2 45.087 173 92 2 25 197 69 238 7.31e-46 157
Msa0715250 AT3G17070.1 33.224 304 197 6 27 326 38 339 5.01e-45 157
Msa0715250 AT5G39580.2 44.560 193 100 3 9 201 10 195 1.40e-44 152
Msa0715250 AT2G24800.2 45.087 173 88 3 25 195 29 196 2.41e-38 136
Msa0715250 AT3G17070.2 31.679 262 172 7 69 326 18 276 1.77e-30 117
Msa0715250 AT3G42570.1 34.821 112 60 3 56 165 20 120 6.57e-11 60.5

Find 59 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCAGAGTAGAGGGCCATTT+TGG 0.168625 5_1:+8219496 Msa0715250:intron
TGCAGTTTCTGTTGAGAAAA+TGG 0.175355 5_1:+8220202 Msa0715250:CDS
CCTCTTAATGAATTCTTATT+AGG 0.231906 5_1:-8219230 None:intergenic
GATGATTCAGACACACTAAA+AGG 0.290985 5_1:+8219191 Msa0715250:CDS
TTAACTATTCTGTTCAGATT+TGG 0.299173 5_1:-8218920 None:intergenic
CAATCAGACCAAGCTCTATT+AGG 0.312839 5_1:+8220113 Msa0715250:CDS
CCAAGATGTACAGCCCAAAA+TGG 0.352063 5_1:-8219510 None:intergenic
AGGATCCAATGGAGCCAAAT+TGG 0.353753 5_1:-8220027 None:intergenic
AGCTGTTTCAGACACCAATT+TGG 0.354861 5_1:+8220013 Msa0715250:CDS
AGACACCAATTTGGCTCCAT+TGG 0.357634 5_1:+8220022 Msa0715250:CDS
TGATGTTCTTACGGGACAAC+AGG 0.360814 5_1:+8220232 Msa0715250:CDS
ATAAATATGTTATGTGTGTT+TGG 0.363550 5_1:+8220384 Msa0715250:three_prime_UTR
TGACAGCACAACTGCTTCAT+TGG 0.363732 5_1:+8220136 Msa0715250:CDS
CCTAATAAGAATTCATTAAG+AGG 0.373805 5_1:+8219230 Msa0715250:CDS
ATGTTATGTGTGTTTGGATT+TGG 0.382866 5_1:+8220390 Msa0715250:three_prime_UTR
CGGGACAACAGGGTCAAATA+AGG 0.392480 5_1:+8220243 Msa0715250:CDS
GTGTCTGAAACAGCTTGATT+TGG 0.395419 5_1:-8220005 None:intergenic
TATGCAGGTGCACACACCTT+TGG 0.410019 5_1:+8219873 Msa0715250:intron
CTATTCGACTTTGGTGGCTC+TGG 0.414711 5_1:+8219927 Msa0715250:CDS
GGTCGCATTGATGTTCTTAC+GGG 0.420596 5_1:+8220224 Msa0715250:CDS
AGCAGCAATCCTTGAGTCAT+TGG 0.423951 5_1:-8218966 None:intergenic
TCAGCACATGACACTGTGTT+AGG 0.424517 5_1:-8219299 None:intergenic
GGGTCGCATTGATGTTCTTA+CGG 0.427573 5_1:+8220223 Msa0715250:CDS
TTACATTGACGAAACAATCA+TGG 0.430670 5_1:-8219009 None:intergenic
TACTTGATATACAGCATCTC+TGG 0.434277 5_1:-8219339 None:intergenic
GCAGTTTCTGTTGAGAAAAT+GGG 0.438276 5_1:+8220203 Msa0715250:CDS
CATATTTATATCATCATTTG+AGG 0.448471 5_1:-8220370 None:intergenic
AAGACCTTTGGAAATGAACT+TGG 0.454907 5_1:-8219613 None:intergenic
GTCATCATAGTTTCAACTCA+TGG 0.461873 5_1:+8218793 Msa0715250:exon
ATGTGATGGATCTGTGCTAC+TGG 0.464722 5_1:+8219169 Msa0715250:CDS
CGAAACAATCATGGAAATGA+AGG 0.464987 5_1:-8219000 None:intergenic
TCAAATGTGTTGCTTGTGAC+AGG 0.470077 5_1:-8220047 None:intergenic
TTTATATCATCATTTGAGGC+AGG 0.473641 5_1:-8220366 None:intergenic
AAACCAAGACTATTCGACTT+TGG 0.476500 5_1:+8219918 Msa0715250:CDS
ATGATTCAGACACACTAAAA+GGG 0.487747 5_1:+8219192 Msa0715250:CDS
TGCTGTCACCTAATAGAGCT+TGG 0.491857 5_1:-8220121 None:intergenic
TGAACCTCTAGAAAACATTA+CGG 0.495557 5_1:+8219590 Msa0715250:CDS
GGTGTTACTTAGGGATGTGA+TGG 0.495687 5_1:+8219155 Msa0715250:intron
CCAAGACTATTCGACTTTGG+TGG 0.503120 5_1:+8219921 Msa0715250:CDS
CCACCAAAGTCGAATAGTCT+TGG 0.511471 5_1:-8219921 None:intergenic
AAGGATGTAGCAGTGCTCTC+AGG 0.511701 5_1:+8219642 Msa0715250:CDS
ATCATCATTTGAGGCAGGCA+CGG 0.543567 5_1:-8220361 None:intergenic
TCTAGAGGTTCAAAGGGTGA+TGG 0.550333 5_1:-8219579 None:intergenic
GTACATCTTGGTCGTAGAGA+TGG 0.571929 5_1:+8219522 Msa0715250:CDS
ACGGCCAAGTTCATTTCCAA+AGG 0.572086 5_1:+8219609 Msa0715250:CDS
TGGTTAACTATTATAGCAAG+TGG 0.574333 5_1:+8220156 Msa0715250:CDS
TAGAGTTGAGAGCACACAAG+TGG 0.587545 5_1:-8218872 None:intergenic
CAGCTATAGCCAATGACTCA+AGG 0.590497 5_1:+8218957 Msa0715250:CDS
TATCCAATATGAGTTCCACT+TGG 0.603413 5_1:-8220432 None:intergenic
TTGCTTGTGACAGGATCCAA+TGG 0.612319 5_1:-8220038 None:intergenic
TCTGAGTCACTTAATCCAAG+TGG 0.623299 5_1:+8220417 Msa0715250:three_prime_UTR
TTGAAACTATGATGACAACA+AGG 0.626281 5_1:-8218786 None:intergenic
TGATTCAGACACACTAAAAG+GGG 0.629420 5_1:+8219193 Msa0715250:CDS
GAAACTATGATGACAACAAG+GGG 0.630677 5_1:-8218784 None:intergenic
ATTTGCGTCGCTCTCACTCG+CGG 0.635311 5_1:-8219550 None:intergenic
AGAAGTGATGAATCAAGTGA+TGG 0.657845 5_1:-8219960 None:intergenic
GATGTTCTTACGGGACAACA+GGG 0.658146 5_1:+8220233 Msa0715250:CDS
TGAAACTATGATGACAACAA+GGG 0.665100 5_1:-8218785 None:intergenic
AAAGCATTGAGCAAAGCCAA+AGG 0.681054 5_1:-8219889 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTAATTTCTTATTTCATTT+TGG + chr5_1:8219134-8219153 Msa0715250:intron 15.0%
!!! AATTTTAAGTAACAATATGT+TGG - chr5_1:8219458-8219477 None:intergenic 15.0%
!! ATCTTATAAAATAATTGTGA+AGG - chr5_1:8219675-8219694 None:intergenic 15.0%
!!! ACTAAACTTTTTAAAATCAA+AGG - chr5_1:8220322-8220341 None:intergenic 15.0%
!!! GTTAATTTCTTATTTCATTT+TGG + chr5_1:8219134-8219153 Msa0715250:intron 15.0%
!!! AATTTTAAGTAACAATATGT+TGG - chr5_1:8219458-8219477 None:intergenic 15.0%
!! ATCTTATAAAATAATTGTGA+AGG - chr5_1:8219675-8219694 None:intergenic 15.0%
!!! ACTAAACTTTTTAAAATCAA+AGG - chr5_1:8220322-8220341 None:intergenic 15.0%
!! AATGAAATATTAAGGATCTA+AGG - chr5_1:8219769-8219788 None:intergenic 20.0%
!! TCAGATTCAATGAAATATTA+AGG - chr5_1:8219777-8219796 None:intergenic 20.0%
!! TCAAATAAGGAAAAATTGTA+GGG + chr5_1:8220256-8220275 Msa0715250:CDS 20.0%
!! CATATTTATATCATCATTTG+AGG - chr5_1:8220373-8220392 None:intergenic 20.0%
!! ATAAATATGTTATGTGTGTT+TGG + chr5_1:8220384-8220403 Msa0715250:three_prime_UTR 20.0%
!! AATGAAATATTAAGGATCTA+AGG - chr5_1:8219769-8219788 None:intergenic 20.0%
!! TCAGATTCAATGAAATATTA+AGG - chr5_1:8219777-8219796 None:intergenic 20.0%
!! TCAAATAAGGAAAAATTGTA+GGG + chr5_1:8220256-8220275 Msa0715250:CDS 20.0%
!! CATATTTATATCATCATTTG+AGG - chr5_1:8220373-8220392 None:intergenic 20.0%
!! ATAAATATGTTATGTGTGTT+TGG + chr5_1:8220384-8220403 Msa0715250:three_prime_UTR 20.0%
! TTAACTATTCTGTTCAGATT+TGG - chr5_1:8218923-8218942 None:intergenic 25.0%
!!! ATTTCATTTTGGTGTTACTT+AGG + chr5_1:8219145-8219164 Msa0715250:intron 25.0%
!!! TTTCATTTTGGTGTTACTTA+GGG + chr5_1:8219146-8219165 Msa0715250:intron 25.0%
! CCTCTTAATGAATTCTTATT+AGG - chr5_1:8219233-8219252 None:intergenic 25.0%
! CCTAATAAGAATTCATTAAG+AGG + chr5_1:8219230-8219249 Msa0715250:CDS 25.0%
!!! AAAAATGTTTTGAGCAATTC+TGG + chr5_1:8220083-8220102 Msa0715250:CDS 25.0%
!! AAATCTCTGAAAAACAGAAT+AGG - chr5_1:8220182-8220201 None:intergenic 25.0%
! GTCAAATAAGGAAAAATTGT+AGG + chr5_1:8220255-8220274 Msa0715250:CDS 25.0%
! TTAACTATTCTGTTCAGATT+TGG - chr5_1:8218923-8218942 None:intergenic 25.0%
!!! ATTTCATTTTGGTGTTACTT+AGG + chr5_1:8219145-8219164 Msa0715250:intron 25.0%
!!! TTTCATTTTGGTGTTACTTA+GGG + chr5_1:8219146-8219165 Msa0715250:intron 25.0%
! CCTCTTAATGAATTCTTATT+AGG - chr5_1:8219233-8219252 None:intergenic 25.0%
! CCTAATAAGAATTCATTAAG+AGG + chr5_1:8219230-8219249 Msa0715250:CDS 25.0%
!!! AAAAATGTTTTGAGCAATTC+TGG + chr5_1:8220083-8220102 Msa0715250:CDS 25.0%
!! AAATCTCTGAAAAACAGAAT+AGG - chr5_1:8220182-8220201 None:intergenic 25.0%
! GTCAAATAAGGAAAAATTGT+AGG + chr5_1:8220255-8220274 Msa0715250:CDS 25.0%
TGAAACTATGATGACAACAA+GGG - chr5_1:8218788-8218807 None:intergenic 30.0%
TTGAAACTATGATGACAACA+AGG - chr5_1:8218789-8218808 None:intergenic 30.0%
TTACATTGACGAAACAATCA+TGG - chr5_1:8219012-8219031 None:intergenic 30.0%
ATGATTCAGACACACTAAAA+GGG + chr5_1:8219192-8219211 Msa0715250:CDS 30.0%
!! ATGTTTTCTAGAGGTTCAAA+GGG - chr5_1:8219588-8219607 None:intergenic 30.0%
!! AATGTTTTCTAGAGGTTCAA+AGG - chr5_1:8219589-8219608 None:intergenic 30.0%
! TGAACCTCTAGAAAACATTA+CGG + chr5_1:8219590-8219609 Msa0715250:CDS 30.0%
TTCCAAAGGTCTTGAAAAAA+AGG + chr5_1:8219623-8219642 Msa0715250:CDS 30.0%
!!! ATCCTTTTTTTCAAGACCTT+TGG - chr5_1:8219628-8219647 None:intergenic 30.0%
GTTTAAATCCTTAACTCCAA+AGG + chr5_1:8219718-8219737 Msa0715250:intron 30.0%
! TTTTTACATATGAGACCGAA+TGG + chr5_1:8219806-8219825 Msa0715250:intron 30.0%
TGGTTAACTATTATAGCAAG+TGG + chr5_1:8220156-8220175 Msa0715250:CDS 30.0%
! TTTATATCATCATTTGAGGC+AGG - chr5_1:8220369-8220388 None:intergenic 30.0%
ATGTTATGTGTGTTTGGATT+TGG + chr5_1:8220390-8220409 Msa0715250:three_prime_UTR 30.0%
TGAAACTATGATGACAACAA+GGG - chr5_1:8218788-8218807 None:intergenic 30.0%
TTGAAACTATGATGACAACA+AGG - chr5_1:8218789-8218808 None:intergenic 30.0%
TTACATTGACGAAACAATCA+TGG - chr5_1:8219012-8219031 None:intergenic 30.0%
ATGATTCAGACACACTAAAA+GGG + chr5_1:8219192-8219211 Msa0715250:CDS 30.0%
!! ATGTTTTCTAGAGGTTCAAA+GGG - chr5_1:8219588-8219607 None:intergenic 30.0%
!! AATGTTTTCTAGAGGTTCAA+AGG - chr5_1:8219589-8219608 None:intergenic 30.0%
! TGAACCTCTAGAAAACATTA+CGG + chr5_1:8219590-8219609 Msa0715250:CDS 30.0%
TTCCAAAGGTCTTGAAAAAA+AGG + chr5_1:8219623-8219642 Msa0715250:CDS 30.0%
!!! ATCCTTTTTTTCAAGACCTT+TGG - chr5_1:8219628-8219647 None:intergenic 30.0%
GTTTAAATCCTTAACTCCAA+AGG + chr5_1:8219718-8219737 Msa0715250:intron 30.0%
! TTTTTACATATGAGACCGAA+TGG + chr5_1:8219806-8219825 Msa0715250:intron 30.0%
TGGTTAACTATTATAGCAAG+TGG + chr5_1:8220156-8220175 Msa0715250:CDS 30.0%
! TTTATATCATCATTTGAGGC+AGG - chr5_1:8220369-8220388 None:intergenic 30.0%
ATGTTATGTGTGTTTGGATT+TGG + chr5_1:8220390-8220409 Msa0715250:three_prime_UTR 30.0%
GAAACTATGATGACAACAAG+GGG - chr5_1:8218787-8218806 None:intergenic 35.0%
GTCATCATAGTTTCAACTCA+TGG + chr5_1:8218793-8218812 Msa0715250:exon 35.0%
CGAAACAATCATGGAAATGA+AGG - chr5_1:8219003-8219022 None:intergenic 35.0%
GATGATTCAGACACACTAAA+AGG + chr5_1:8219191-8219210 Msa0715250:CDS 35.0%
TGATTCAGACACACTAAAAG+GGG + chr5_1:8219193-8219212 Msa0715250:CDS 35.0%
TACTTGATATACAGCATCTC+TGG - chr5_1:8219342-8219361 None:intergenic 35.0%
!!! TTTTTTTCTTCCCAGAGTAG+AGG + chr5_1:8219486-8219505 Msa0715250:intron 35.0%
!!! TTTTTTCTTCCCAGAGTAGA+GGG + chr5_1:8219487-8219506 Msa0715250:intron 35.0%
! AAGACCTTTGGAAATGAACT+TGG - chr5_1:8219616-8219635 None:intergenic 35.0%
AATCCTTAACTCCAAAGGTT+TGG + chr5_1:8219723-8219742 Msa0715250:intron 35.0%
TTACTACTAGACCAAACCTT+TGG - chr5_1:8219737-8219756 None:intergenic 35.0%
! GGTTTGGTCTAGTAGTAAAA+AGG + chr5_1:8219739-8219758 Msa0715250:intron 35.0%
AGTCAATACACGTGTGAAAT+TGG - chr5_1:8219852-8219871 None:intergenic 35.0%
AAACCAAGACTATTCGACTT+TGG + chr5_1:8219918-8219937 Msa0715250:CDS 35.0%
AGAAGTGATGAATCAAGTGA+TGG - chr5_1:8219963-8219982 None:intergenic 35.0%
TGCAGTTTCTGTTGAGAAAA+TGG + chr5_1:8220202-8220221 Msa0715250:CDS 35.0%
GCAGTTTCTGTTGAGAAAAT+GGG + chr5_1:8220203-8220222 Msa0715250:CDS 35.0%
GAAACTATGATGACAACAAG+GGG - chr5_1:8218787-8218806 None:intergenic 35.0%
GTCATCATAGTTTCAACTCA+TGG + chr5_1:8218793-8218812 Msa0715250:exon 35.0%
CGAAACAATCATGGAAATGA+AGG - chr5_1:8219003-8219022 None:intergenic 35.0%
GATGATTCAGACACACTAAA+AGG + chr5_1:8219191-8219210 Msa0715250:CDS 35.0%
TGATTCAGACACACTAAAAG+GGG + chr5_1:8219193-8219212 Msa0715250:CDS 35.0%
TACTTGATATACAGCATCTC+TGG - chr5_1:8219342-8219361 None:intergenic 35.0%
!!! TTTTTTTCTTCCCAGAGTAG+AGG + chr5_1:8219486-8219505 Msa0715250:intron 35.0%
!!! TTTTTTCTTCCCAGAGTAGA+GGG + chr5_1:8219487-8219506 Msa0715250:intron 35.0%
! AAGACCTTTGGAAATGAACT+TGG - chr5_1:8219616-8219635 None:intergenic 35.0%
AATCCTTAACTCCAAAGGTT+TGG + chr5_1:8219723-8219742 Msa0715250:intron 35.0%
TTACTACTAGACCAAACCTT+TGG - chr5_1:8219737-8219756 None:intergenic 35.0%
! GGTTTGGTCTAGTAGTAAAA+AGG + chr5_1:8219739-8219758 Msa0715250:intron 35.0%
AGTCAATACACGTGTGAAAT+TGG - chr5_1:8219852-8219871 None:intergenic 35.0%
AAACCAAGACTATTCGACTT+TGG + chr5_1:8219918-8219937 Msa0715250:CDS 35.0%
AGAAGTGATGAATCAAGTGA+TGG - chr5_1:8219963-8219982 None:intergenic 35.0%
TGCAGTTTCTGTTGAGAAAA+TGG + chr5_1:8220202-8220221 Msa0715250:CDS 35.0%
GCAGTTTCTGTTGAGAAAAT+GGG + chr5_1:8220203-8220222 Msa0715250:CDS 35.0%
! TTGGCCGTAATGTTTTCTAG+AGG - chr5_1:8219597-8219616 None:intergenic 40.0%
!! AGACCAAACCTTTGGAGTTA+AGG - chr5_1:8219729-8219748 None:intergenic 40.0%
CGACTAACTAGTACACCATT+CGG - chr5_1:8219824-8219843 None:intergenic 40.0%
!! CACGTGTATTGACTATATGC+AGG + chr5_1:8219858-8219877 Msa0715250:intron 40.0%
!! AAAGCATTGAGCAAAGCCAA+AGG - chr5_1:8219892-8219911 None:intergenic 40.0%
! GTGTCTGAAACAGCTTGATT+TGG - chr5_1:8220008-8220027 None:intergenic 40.0%
! AGCTGTTTCAGACACCAATT+TGG + chr5_1:8220013-8220032 Msa0715250:CDS 40.0%
!! TCAAATGTGTTGCTTGTGAC+AGG - chr5_1:8220050-8220069 None:intergenic 40.0%
CAATCAGACCAAGCTCTATT+AGG + chr5_1:8220113-8220132 Msa0715250:CDS 40.0%
TCTGAGTCACTTAATCCAAG+TGG + chr5_1:8220417-8220436 Msa0715250:three_prime_UTR 40.0%
! TTGGCCGTAATGTTTTCTAG+AGG - chr5_1:8219597-8219616 None:intergenic 40.0%
!! AGACCAAACCTTTGGAGTTA+AGG - chr5_1:8219729-8219748 None:intergenic 40.0%
CGACTAACTAGTACACCATT+CGG - chr5_1:8219824-8219843 None:intergenic 40.0%
!! CACGTGTATTGACTATATGC+AGG + chr5_1:8219858-8219877 Msa0715250:intron 40.0%
!! AAAGCATTGAGCAAAGCCAA+AGG - chr5_1:8219892-8219911 None:intergenic 40.0%
! GTGTCTGAAACAGCTTGATT+TGG - chr5_1:8220008-8220027 None:intergenic 40.0%
! AGCTGTTTCAGACACCAATT+TGG + chr5_1:8220013-8220032 Msa0715250:CDS 40.0%
!! TCAAATGTGTTGCTTGTGAC+AGG - chr5_1:8220050-8220069 None:intergenic 40.0%
CAATCAGACCAAGCTCTATT+AGG + chr5_1:8220113-8220132 Msa0715250:CDS 40.0%
TCTGAGTCACTTAATCCAAG+TGG + chr5_1:8220417-8220436 Msa0715250:three_prime_UTR 40.0%
! TAGAGTTGAGAGCACACAAG+TGG - chr5_1:8218875-8218894 None:intergenic 45.0%
CAGCTATAGCCAATGACTCA+AGG + chr5_1:8218957-8218976 Msa0715250:CDS 45.0%
AGCAGCAATCCTTGAGTCAT+TGG - chr5_1:8218969-8218988 None:intergenic 45.0%
!! GGTGTTACTTAGGGATGTGA+TGG + chr5_1:8219155-8219174 Msa0715250:intron 45.0%
!! ATGTGATGGATCTGTGCTAC+TGG + chr5_1:8219169-8219188 Msa0715250:CDS 45.0%
TCAGCACATGACACTGTGTT+AGG - chr5_1:8219302-8219321 None:intergenic 45.0%
CCAAGATGTACAGCCCAAAA+TGG - chr5_1:8219513-8219532 None:intergenic 45.0%
! CCATTTTGGGCTGTACATCT+TGG + chr5_1:8219510-8219529 Msa0715250:CDS 45.0%
GTACATCTTGGTCGTAGAGA+TGG + chr5_1:8219522-8219541 Msa0715250:CDS 45.0%
TCTAGAGGTTCAAAGGGTGA+TGG - chr5_1:8219582-8219601 None:intergenic 45.0%
ACGGCCAAGTTCATTTCCAA+AGG + chr5_1:8219609-8219628 Msa0715250:CDS 45.0%
CCACCAAAGTCGAATAGTCT+TGG - chr5_1:8219924-8219943 None:intergenic 45.0%
CCAAGACTATTCGACTTTGG+TGG + chr5_1:8219921-8219940 Msa0715250:CDS 45.0%
! AGACACCAATTTGGCTCCAT+TGG + chr5_1:8220022-8220041 Msa0715250:CDS 45.0%
AGGATCCAATGGAGCCAAAT+TGG - chr5_1:8220030-8220049 None:intergenic 45.0%
TTGCTTGTGACAGGATCCAA+TGG - chr5_1:8220041-8220060 None:intergenic 45.0%
TGCTGTCACCTAATAGAGCT+TGG - chr5_1:8220124-8220143 None:intergenic 45.0%
TGACAGCACAACTGCTTCAT+TGG + chr5_1:8220136-8220155 Msa0715250:CDS 45.0%
! GGGTCGCATTGATGTTCTTA+CGG + chr5_1:8220223-8220242 Msa0715250:CDS 45.0%
! GGTCGCATTGATGTTCTTAC+GGG + chr5_1:8220224-8220243 Msa0715250:CDS 45.0%
TGATGTTCTTACGGGACAAC+AGG + chr5_1:8220232-8220251 Msa0715250:CDS 45.0%
GATGTTCTTACGGGACAACA+GGG + chr5_1:8220233-8220252 Msa0715250:CDS 45.0%
! ATCATCATTTGAGGCAGGCA+CGG - chr5_1:8220364-8220383 None:intergenic 45.0%
! TAGAGTTGAGAGCACACAAG+TGG - chr5_1:8218875-8218894 None:intergenic 45.0%
CAGCTATAGCCAATGACTCA+AGG + chr5_1:8218957-8218976 Msa0715250:CDS 45.0%
AGCAGCAATCCTTGAGTCAT+TGG - chr5_1:8218969-8218988 None:intergenic 45.0%
!! GGTGTTACTTAGGGATGTGA+TGG + chr5_1:8219155-8219174 Msa0715250:intron 45.0%
!! ATGTGATGGATCTGTGCTAC+TGG + chr5_1:8219169-8219188 Msa0715250:CDS 45.0%
TCAGCACATGACACTGTGTT+AGG - chr5_1:8219302-8219321 None:intergenic 45.0%
CCAAGATGTACAGCCCAAAA+TGG - chr5_1:8219513-8219532 None:intergenic 45.0%
! CCATTTTGGGCTGTACATCT+TGG + chr5_1:8219510-8219529 Msa0715250:CDS 45.0%
GTACATCTTGGTCGTAGAGA+TGG + chr5_1:8219522-8219541 Msa0715250:CDS 45.0%
TCTAGAGGTTCAAAGGGTGA+TGG - chr5_1:8219582-8219601 None:intergenic 45.0%
ACGGCCAAGTTCATTTCCAA+AGG + chr5_1:8219609-8219628 Msa0715250:CDS 45.0%
CCACCAAAGTCGAATAGTCT+TGG - chr5_1:8219924-8219943 None:intergenic 45.0%
CCAAGACTATTCGACTTTGG+TGG + chr5_1:8219921-8219940 Msa0715250:CDS 45.0%
! AGACACCAATTTGGCTCCAT+TGG + chr5_1:8220022-8220041 Msa0715250:CDS 45.0%
AGGATCCAATGGAGCCAAAT+TGG - chr5_1:8220030-8220049 None:intergenic 45.0%
TTGCTTGTGACAGGATCCAA+TGG - chr5_1:8220041-8220060 None:intergenic 45.0%
TGCTGTCACCTAATAGAGCT+TGG - chr5_1:8220124-8220143 None:intergenic 45.0%
TGACAGCACAACTGCTTCAT+TGG + chr5_1:8220136-8220155 Msa0715250:CDS 45.0%
! GGGTCGCATTGATGTTCTTA+CGG + chr5_1:8220223-8220242 Msa0715250:CDS 45.0%
! GGTCGCATTGATGTTCTTAC+GGG + chr5_1:8220224-8220243 Msa0715250:CDS 45.0%
TGATGTTCTTACGGGACAAC+AGG + chr5_1:8220232-8220251 Msa0715250:CDS 45.0%
GATGTTCTTACGGGACAACA+GGG + chr5_1:8220233-8220252 Msa0715250:CDS 45.0%
! ATCATCATTTGAGGCAGGCA+CGG - chr5_1:8220364-8220383 None:intergenic 45.0%
CCAAAATGGCCCTCTACTCT+GGG - chr5_1:8219499-8219518 None:intergenic 50.0%
!! CCAGAGTAGAGGGCCATTTT+GGG + chr5_1:8219497-8219516 Msa0715250:intron 50.0%
AAGGATGTAGCAGTGCTCTC+AGG + chr5_1:8219642-8219661 Msa0715250:CDS 50.0%
TATGCAGGTGCACACACCTT+TGG + chr5_1:8219873-8219892 Msa0715250:intron 50.0%
! CTATTCGACTTTGGTGGCTC+TGG + chr5_1:8219927-8219946 Msa0715250:CDS 50.0%
CGGGACAACAGGGTCAAATA+AGG + chr5_1:8220243-8220262 Msa0715250:CDS 50.0%
CCAAAATGGCCCTCTACTCT+GGG - chr5_1:8219499-8219518 None:intergenic 50.0%
!! CCAGAGTAGAGGGCCATTTT+GGG + chr5_1:8219497-8219516 Msa0715250:intron 50.0%
AAGGATGTAGCAGTGCTCTC+AGG + chr5_1:8219642-8219661 Msa0715250:CDS 50.0%
TATGCAGGTGCACACACCTT+TGG + chr5_1:8219873-8219892 Msa0715250:intron 50.0%
! CTATTCGACTTTGGTGGCTC+TGG + chr5_1:8219927-8219946 Msa0715250:CDS 50.0%
CGGGACAACAGGGTCAAATA+AGG + chr5_1:8220243-8220262 Msa0715250:CDS 50.0%
! CCCAGAGTAGAGGGCCATTT+TGG + chr5_1:8219496-8219515 Msa0715250:intron 55.0%
CCCAAAATGGCCCTCTACTC+TGG - chr5_1:8219500-8219519 None:intergenic 55.0%
ATTTGCGTCGCTCTCACTCG+CGG - chr5_1:8219553-8219572 None:intergenic 55.0%
! CCCAGAGTAGAGGGCCATTT+TGG + chr5_1:8219496-8219515 Msa0715250:intron 55.0%
CCCAAAATGGCCCTCTACTC+TGG - chr5_1:8219500-8219519 None:intergenic 55.0%
ATTTGCGTCGCTCTCACTCG+CGG - chr5_1:8219553-8219572 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 8218776 8220444 8218776 ID=Msa0715250;Name=Msa0715250
chr5_1 mRNA 8218776 8220444 8218776 ID=Msa0715250-mRNA-1;Parent=Msa0715250;Name=Msa0715250-mRNA-1;_AED=0.27;_eAED=0.27;_QI=36|1|1|1|1|1|4|155|326
chr5_1 exon 8218776 8219027 8218776 ID=Msa0715250-mRNA-1:exon:3427;Parent=Msa0715250-mRNA-1
chr5_1 exon 8219167 8219358 8219167 ID=Msa0715250-mRNA-1:exon:3428;Parent=Msa0715250-mRNA-1
chr5_1 exon 8219501 8219663 8219501 ID=Msa0715250-mRNA-1:exon:3429;Parent=Msa0715250-mRNA-1
chr5_1 exon 8219880 8220444 8219880 ID=Msa0715250-mRNA-1:exon:3430;Parent=Msa0715250-mRNA-1
chr5_1 five_prime_UTR 8218776 8218811 8218776 ID=Msa0715250-mRNA-1:five_prime_utr;Parent=Msa0715250-mRNA-1
chr5_1 CDS 8218812 8219027 8218812 ID=Msa0715250-mRNA-1:cds;Parent=Msa0715250-mRNA-1
chr5_1 CDS 8219167 8219358 8219167 ID=Msa0715250-mRNA-1:cds;Parent=Msa0715250-mRNA-1
chr5_1 CDS 8219501 8219663 8219501 ID=Msa0715250-mRNA-1:cds;Parent=Msa0715250-mRNA-1
chr5_1 CDS 8219880 8220289 8219880 ID=Msa0715250-mRNA-1:cds;Parent=Msa0715250-mRNA-1
chr5_1 three_prime_UTR 8220290 8220444 8220290 ID=Msa0715250-mRNA-1:three_prime_utr;Parent=Msa0715250-mRNA-1
Gene Sequence

>Msa0715250

ATGGAGTGTGTCTCTAGCAAGCATGTTTTTGTTTTCATGTTTTGTCTTGTGTTTCTTACTCCACTTGTGTGCTCTCAACTCTATTACAATTTCTACATTAGAACTTGTCCAAATCTGAACAGAATAGTTAAAAACAATATCTTGTCAGCTATAGCCAATGACTCAAGGATTGCTGCTTCTCTCTTGCGCCTTCATTTCCATGATTGTTTCGTCAATGGATGTGATGGATCTGTGCTACTGGATGATTCAGACACACTAAAAGGGGAGAAAAACGCACTGCCTAATAAGAATTCATTAAGAGGATTTGATGTAATTGACAAAATAAAGTTTGATTTAGAGAATGCTTGTCCTAACACAGTGTCATGTGCTGATATACTTACTCTAGCAGCCAGAGATGCTGTATATCAAAGTAGAGGGCCATTTTGGGCTGTACATCTTGGTCGTAGAGATGGCACAACCGCGAGTGAGAGCGACGCAAATAACTTGCCATCACCCTTTGAACCTCTAGAAAACATTACGGCCAAGTTCATTTCCAAAGGTCTTGAAAAAAAGGATGTAGCAGTGCTCTCAGGTGCACACACCTTTGGCTTTGCTCAATGCTTTACATTCAAACCAAGACTATTCGACTTTGGTGGCTCTGGTAAATCTGATCCATCACTTGATTCATCACTTCTACAAAACTTACAAAAAGTATGTCCAAATCAAGCTGTTTCAGACACCAATTTGGCTCCATTGGATCCTGTCACAAGCAACACATTTGACAACACATATTACAAAAATGTTTTGAGCAATTCTGGACTACTTCAATCAGACCAAGCTCTATTAGGTGACAGCACAACTGCTTCATTGGTTAACTATTATAGCAAGTGGCCTATTCTGTTTTTCAGAGATTTTGCAGTTTCTGTTGAGAAAATGGGTCGCATTGATGTTCTTACGGGACAACAGGGTCAAATAAGGAAAAATTGTAGGGCTGTTAACTAG

Protein sequence

>Msa0715250

MECVSSKHVFVFMFCLVFLTPLVCSQLYYNFYIRTCPNLNRIVKNNILSAIANDSRIAASLLRLHFHDCFVNGCDGSVLLDDSDTLKGEKNALPNKNSLRGFDVIDKIKFDLENACPNTVSCADILTLAARDAVYQSRGPFWAVHLGRRDGTTASESDANNLPSPFEPLENITAKFISKGLEKKDVAVLSGAHTFGFAQCFTFKPRLFDFGGSGKSDPSLDSSLLQNLQKVCPNQAVSDTNLAPLDPVTSNTFDNTYYKNVLSNSGLLQSDQALLGDSTTASLVNYYSKWPILFFRDFAVSVEKMGRIDVLTGQQGQIRKNCRAVN*