AlfalfaGEDB | Msa1339490

M. sativa cultivar zhongmu-4 / Msa1339490

KEGG: -
GO: -
PFAM: PF00139.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1339490	XP_013469340.2	69.455	275	80	2	1	272	1	274	5.49e-128	374

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1339490	sp\|Q41160\|LCB3_ROBPS	53.818	275	118	4	5	273	1	272	1.41e-94	282

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1339490	A0A072VPS3	69.455	275	80	2	1	272	1	274	1.31e-127	373

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0012820	Msa1339490	0.815066	1.118331e-51	-8.615850e-47
Msa0031650	Msa1339490	0.809541	1.797976e-50	-8.615850e-47
Msa0036230	Msa1339490	0.874274	7.679039e-68	-8.615850e-47
Msa0036580	Msa1339490	0.825411	4.755742e-54	-8.615850e-47
Msa0059880	Msa1339490	0.806238	9.063345e-50	-8.615850e-47
Msa0061600	Msa1339490	0.827476	1.531609e-54	-8.615850e-47
Msa0084150	Msa1339490	0.854785	9.767259e-62	-8.615850e-47
Msa0084160	Msa1339490	0.866839	2.126013e-65	-8.615850e-47
Msa0085710	Msa1339490	0.818820	1.605297e-52	-8.615850e-47
Msa0093530	Msa1339490	0.821817	3.299337e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1339490	MtrunA17_Chr1g0197801	59.786	281	70	4	1	272	1	247	3.79e-105	305
Msa1339490	MtrunA17_Chr3g0095861	51.071	280	128	3	1	273	1	278	3.63e-91	271
Msa1339490	MtrunA17_Chr3g0095851	51.071	280	128	3	1	273	2	279	3.79e-91	271
Msa1339490	MtrunA17_Chr3g0096161	52.222	270	127	2	1	269	1	269	7.32e-89	265
Msa1339490	MtrunA17_Chr3g0100011	56.170	235	100	2	21	255	44	275	5.13e-88	266
Msa1339490	MtrunA17_Chr3g0100031	53.942	241	108	2	21	261	17	254	3.40e-87	260
Msa1339490	MtrunA17_Chr3g0100021	52.743	237	107	3	21	255	5	238	5.78e-81	245
Msa1339490	MtrunA17_Chr1g0197771	49.206	252	124	3	14	264	15	263	1.37e-70	219
Msa1339490	MtrunA17_Chr3g0087611	47.826	276	126	11	1	264	1	270	4.15e-67	210
Msa1339490	MtrunA17_Chr1g0197791	43.357	286	130	10	1	275	1	265	2.76e-58	187

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1339490	AT5G10530.1	39.431	246	122	13	35	262	19	255	1.02e-30	120
Msa1339490	AT5G65600.1	34.081	223	128	9	35	241	35	254	9.11e-23	98.2
Msa1339490	AT5G06740.2	30.855	269	144	12	16	258	17	269	2.35e-17	82.0
Msa1339490	AT5G06740.1	30.855	269	144	12	16	258	5	257	2.36e-17	82.0
Msa1339490	AT5G55830.1	30.942	223	131	8	57	260	49	267	5.63e-15	75.1
Msa1339490	AT5G03140.1	30.159	252	158	9	17	255	11	257	6.58e-15	75.1
Msa1339490	AT4G02410.1	27.376	263	152	11	31	266	22	272	9.81e-13	68.6
Msa1339490	AT4G04960.2	29.741	232	131	8	36	244	21	243	2.95e-12	67.0
Msa1339490	AT3G53810.1	27.888	251	158	7	29	260	18	264	3.15e-12	67.0
Msa1339490	AT4G04960.1	29.741	232	131	9	36	244	21	243	4.25e-12	66.6

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Find 74 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTTGCAATATTGTTT+GGG	0.344232	tig0003352:+3079	None:intergenic
AAACCAATCCTTACGGTGTT+CGG	0.435951	tig0003352:+3183	None:intergenic
AAAGAAAATAAAATGGAATA+GGG	0.416250	tig0003352:-3334	Msa1339490:CDS
AAAGCTTGCAATATTGTTTG+GGG	0.645833	tig0003352:+3080	None:intergenic
AAATCCATAATTTCCCTACA+AGG	0.579177	tig0003352:-3735	Msa1339490:CDS
AAATTGAGGCACTTCCTTGT+AGG	0.404967	tig0003352:+3721	None:intergenic
AACTCAACTGGTGGAAACCT+TGG	0.508020	tig0003352:-3477	Msa1339490:CDS
AATATTCCTAGCAACTCAAC+TGG	0.536663	tig0003352:-3489	Msa1339490:CDS
AATTCCAACATGTGTGTATT+TGG	0.093315	tig0003352:+3380	None:intergenic
AATTGAGGCACTTCCTTGTA+GGG	0.429899	tig0003352:+3722	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAGTAACACAACAGAAAAT+AGG	+	tig0003352:3097-3116	None:intergenic	30.0%
GGATTTACTATTACTGAAGT+TGG	+	tig0003352:3192-3211	None:intergenic	30.0%
AAATCCATAATTTCCCTACA+AGG	-	tig0003352:3206-3225	Msa1339490:CDS	30.0%
GATTCCATTGGATAAAATTG+AGG	+	tig0003352:3237-3256	None:intergenic	30.0%
ATTCCAACATGTGTGTATTT+GGG	+	tig0003352:3563-3582	None:intergenic	30.0%
AATTCCAACATGTGTGTATT+TGG	+	tig0003352:3564-3583	None:intergenic	30.0%
ATAAAATGGAATAGGGTGAA+TGG	-	tig0003352:3614-3633	Msa1339490:CDS	30.0%
AAAGCTTGCAATATTGTTTG+GGG	+	tig0003352:3864-3883	None:intergenic	30.0%
GAAAAGCTTGCAATATTGTT+TGG	+	tig0003352:3866-3885	None:intergenic	30.0%
TGAGTAACACAACAGAAAAT+AGG	+	tig0003352:3097-3116	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0003352	gene	3068	3895	3068	ID=Msa1339490;Name=Msa1339490
tig0003352	mRNA	3068	3895	3068	ID=Msa1339490-mRNA-1;Parent=Msa1339490;Name=Msa1339490-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|275
tig0003352	exon	3068	3895	3068	ID=Msa1339490-mRNA-1:exon:2170;Parent=Msa1339490-mRNA-1
tig0003352	CDS	3068	3895	3068	ID=Msa1339490-mRNA-1:cds;Parent=Msa1339490-mRNA-1

Gene Sequence

>Msa1339490

ATGGCTTTCTTTCCAACAAATCAAAACCTATTTTCTGTTGTGTTACTCATTTTCACAACTTCATTTCTCTTGCTAGCATCAGAAATAGTGACCTCACAAAAAACAGTTTCCTTCGACATCACCAACTTCAGTAATAGTAAATCCATAATTTCCCTACAAGGAAGTGCCTCAATTTTATCCAATGGAATCTTGGATATAGCCAACCCAACAGATCCAAACTATTTGGCTGGTCGGGCCCTGTATTCAGCACCGGTGCCCATTTGGGATGAAACCACTGGCAACGTGGCGAGCTTCGTCACTTCCTTTTCATTCAGAGTGCATGACTACCAAAAGTTTGTCACATCTGATGGATTTGTTTTCTTTCTTGTACCACAAGATCGAGCCAATATTCCTAGCAACTCAACTGGTGGAAACCTTGGAATTGTTGATGAAAACTCCGCATACAATCCATTTGTTGGTGTAGAGTTTGATAGTTATGCCAATAGGTGGGATCCCAAATACACACATGTTGGAATTAATGCAAACTCTTTGATTTCTTTAAAGAAAATAAAATGGAATAGGGTGAATGGCGCCTTGGTCGATGTAAATATCTCCTATGACAATCTCTCTAAGACATTGAATGTGGTTGTATCTTACCCAGATGGTACCTTTTCAACTATTGCTCAAGTCATTGATTTGAAAGCAGAGCTTCCGAACACCGTAAGGATTGGTTTTTCTGCTGCCACATCAAGAGGTGCCGGTCAGCTAAACAACCTTCATTCATGGTCTTTCAAGTCAAACTTGGACACAACCACCCCAAACAATATTGCAAGCTTTTCAGCCATCTGA

Protein sequence

>Msa1339490

MAFFPTNQNLFSVVLLIFTTSFLLLASEIVTSQKTVSFDITNFSNSKSIISLQGSASILSNGILDIANPTDPNYLAGRALYSAPVPIWDETTGNVASFVTSFSFRVHDYQKFVTSDGFVFFLVPQDRANIPSNSTGGNLGIVDENSAYNPFVGVEFDSYANRWDPKYTHVGINANSLISLKKIKWNRVNGALVDVNISYDNLSKTLNVVVSYPDGTFSTIAQVIDLKAELPNTVRIGFSAATSRGAGQLNNLHSWSFKSNLDTTTPNNIASFSAI*