Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1339490 | XP_013469340.2 | 69.455 | 275 | 80 | 2 | 1 | 272 | 1 | 274 | 5.49e-128 | 374 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1339490 | sp|Q41160|LCB3_ROBPS | 53.818 | 275 | 118 | 4 | 5 | 273 | 1 | 272 | 1.41e-94 | 282 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1339490 | A0A072VPS3 | 69.455 | 275 | 80 | 2 | 1 | 272 | 1 | 274 | 1.31e-127 | 373 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012820 | Msa1339490 | 0.815066 | 1.118331e-51 | -8.615850e-47 |
| Msa0031650 | Msa1339490 | 0.809541 | 1.797976e-50 | -8.615850e-47 |
| Msa0036230 | Msa1339490 | 0.874274 | 7.679039e-68 | -8.615850e-47 |
| Msa0036580 | Msa1339490 | 0.825411 | 4.755742e-54 | -8.615850e-47 |
| Msa0059880 | Msa1339490 | 0.806238 | 9.063345e-50 | -8.615850e-47 |
| Msa0061600 | Msa1339490 | 0.827476 | 1.531609e-54 | -8.615850e-47 |
| Msa0084150 | Msa1339490 | 0.854785 | 9.767259e-62 | -8.615850e-47 |
| Msa0084160 | Msa1339490 | 0.866839 | 2.126013e-65 | -8.615850e-47 |
| Msa0085710 | Msa1339490 | 0.818820 | 1.605297e-52 | -8.615850e-47 |
| Msa0093530 | Msa1339490 | 0.821817 | 3.299337e-53 | -8.615850e-47 |
| Msa0106130 | Msa1339490 | 0.831868 | 1.307396e-55 | -8.615850e-47 |
| Msa0604280 | Msa1339490 | 0.800003 | 1.766802e-48 | -8.615850e-47 |
| Msa0605460 | Msa1339490 | 0.815957 | 7.084019e-52 | -8.615850e-47 |
| Msa0605480 | Msa1339490 | 0.824587 | 7.446224e-54 | -8.615850e-47 |
| Msa0629720 | Msa1339490 | 0.805081 | 1.585608e-49 | -8.615850e-47 |
| Msa0631700 | Msa1339490 | 0.807610 | 4.646357e-50 | -8.615850e-47 |
| Msa0640290 | Msa1339490 | 0.837482 | 5.065652e-57 | -8.615850e-47 |
| Msa0645120 | Msa1339490 | 0.810557 | 1.086407e-50 | -8.615850e-47 |
| Msa0646040 | Msa1339490 | 0.801563 | 8.489496e-49 | -8.615850e-47 |
| Msa0646440 | Msa1339490 | 0.814261 | 1.685468e-51 | -8.615850e-47 |
| Msa0667600 | Msa1339490 | 0.806088 | 9.746330e-50 | -8.615850e-47 |
| Msa0668210 | Msa1339490 | 0.803645 | 3.157972e-49 | -8.615850e-47 |
| Msa0670220 | Msa1339490 | 0.819894 | 9.139369e-53 | -8.615850e-47 |
| Msa0670360 | Msa1339490 | 0.829356 | 5.387870e-55 | -8.615850e-47 |
| Msa0672780 | Msa1339490 | 0.811691 | 6.167959e-51 | -8.615850e-47 |
| Msa0684600 | Msa1339490 | 0.818654 | 1.750732e-52 | -8.615850e-47 |
| Msa0684720 | Msa1339490 | 0.811818 | 5.788065e-51 | -8.615850e-47 |
| Msa0685080 | Msa1339490 | 0.807490 | 4.926898e-50 | -8.615850e-47 |
| Msa0716600 | Msa1339490 | 0.802447 | 5.586007e-49 | -8.615850e-47 |
| Msa0716980 | Msa1339490 | 0.804184 | 2.440548e-49 | -8.615850e-47 |
| Msa0730890 | Msa1339490 | 0.814267 | 1.681115e-51 | -8.615850e-47 |
| Msa0758150 | Msa1339490 | 0.855868 | 4.726062e-62 | -8.615850e-47 |
| Msa0776340 | Msa1339490 | 0.812812 | 3.511006e-51 | -8.615850e-47 |
| Msa0791300 | Msa1339490 | 0.802007 | 6.882651e-49 | -8.615850e-47 |
| Msa0814230 | Msa1339490 | 0.803444 | 3.476528e-49 | -8.615850e-47 |
| Msa0816140 | Msa1339490 | 0.815797 | 7.691929e-52 | -8.615850e-47 |
| Msa0817100 | Msa1339490 | 0.870336 | 1.576237e-66 | -8.615850e-47 |
| Msa0824850 | Msa1339490 | 0.817373 | 3.410934e-52 | -8.615850e-47 |
| Msa0824860 | Msa1339490 | 0.817664 | 2.932021e-52 | -8.615850e-47 |
| Msa0126960 | Msa1339490 | 0.823579 | 1.283725e-53 | -8.615850e-47 |
| Msa0139270 | Msa1339490 | 0.837111 | 6.301497e-57 | -8.615850e-47 |
| Msa0160580 | Msa1339490 | 0.804625 | 1.975034e-49 | -8.615850e-47 |
| Msa0163340 | Msa1339490 | 0.801105 | 1.053478e-48 | -8.615850e-47 |
| Msa0163690 | Msa1339490 | 0.802037 | 6.783916e-49 | -8.615850e-47 |
| Msa0171740 | Msa1339490 | 0.807959 | 3.917843e-50 | -8.615850e-47 |
| Msa0176620 | Msa1339490 | 0.825467 | 4.613394e-54 | -8.615850e-47 |
| Msa0184390 | Msa1339490 | 0.809023 | 2.322417e-50 | -8.615850e-47 |
| Msa0218060 | Msa1339490 | 0.833048 | 6.670942e-56 | -8.615850e-47 |
| Msa1233620 | Msa1339490 | 0.833966 | 3.937012e-56 | -8.615850e-47 |
| Msa1255710 | Msa1339490 | 0.831572 | 1.546808e-55 | -8.615850e-47 |
| Msa1258020 | Msa1339490 | 0.803158 | 3.984332e-49 | -8.615850e-47 |
| Msa1265570 | Msa1339490 | 0.800351 | 1.501329e-48 | -8.615850e-47 |
| Msa1266710 | Msa1339490 | 0.800406 | 1.463292e-48 | -8.615850e-47 |
| Msa1269050 | Msa1339490 | 0.806474 | 8.084005e-50 | -8.615850e-47 |
| Msa1275840 | Msa1339490 | 0.839641 | 1.403609e-57 | -8.615850e-47 |
| Msa1296870 | Msa1339490 | 0.806077 | 9.800629e-50 | -8.615850e-47 |
| Msa1314020 | Msa1339490 | 0.836622 | 8.400376e-57 | -8.615850e-47 |
| Msa1339490 | Msa1350490 | 0.819049 | 1.424557e-52 | -8.615850e-47 |
| Msa1339490 | Msa1362590 | 0.803536 | 3.327423e-49 | -8.615850e-47 |
| Msa1339490 | Msa1363690 | 0.830195 | 3.366919e-55 | -8.615850e-47 |
| Msa1339490 | Msa1365230 | 0.804896 | 1.733396e-49 | -8.615850e-47 |
| Msa1339490 | Msa1370930 | 0.815927 | 7.191929e-52 | -8.615850e-47 |
| Msa1339490 | Msa1376070 | 0.820330 | 7.260555e-53 | -8.615850e-47 |
| Msa1339490 | Msa1378950 | 0.867667 | 1.155828e-65 | -8.615850e-47 |
| Msa1339490 | Msa1380490 | 0.805147 | 1.535892e-49 | -8.615850e-47 |
| Msa1339490 | Msa1390040 | 0.804338 | 2.265857e-49 | -8.615850e-47 |
| Msa1339490 | Msa1393440 | 0.817287 | 3.565424e-52 | -8.615850e-47 |
| Msa1339490 | Msa1395690 | 0.828192 | 1.030514e-54 | -8.615850e-47 |
| Msa1339490 | Msa1396550 | 0.834434 | 3.004468e-56 | -8.615850e-47 |
| Msa1339490 | Msa1401650 | 0.805646 | 1.207394e-49 | -8.615850e-47 |
| Msa1339490 | Msa1407670 | 0.802286 | 6.029219e-49 | -8.615850e-47 |
| Msa1339490 | Msa1409600 | 0.840498 | 8.386192e-58 | -8.615850e-47 |
| Msa1339490 | Msa1411550 | 0.814430 | 1.546514e-51 | -8.615850e-47 |
| Msa1339490 | Msa1417220 | 0.818219 | 2.197688e-52 | -8.615850e-47 |
| Msa1339490 | Msa1421120 | 0.811673 | 6.222774e-51 | -8.615850e-47 |
| Msa1339490 | Msa1426420 | 0.801131 | 1.040433e-48 | -8.615850e-47 |
| Msa1339490 | Msa1445780 | 0.808672 | 2.760166e-50 | -8.615850e-47 |
| Msa1339490 | Msa1452920 | 0.930547 | 1.396217e-93 | -8.615850e-47 |
| Msa1339490 | Msa1459610 | 0.824257 | 8.900316e-54 | -8.615850e-47 |
| Msa0414480 | Msa1339490 | 0.820673 | 6.058045e-53 | -8.615850e-47 |
| Msa0444400 | Msa1339490 | 0.802288 | 6.023826e-49 | -8.615850e-47 |
| Msa0449360 | Msa1339490 | 0.827935 | 1.188551e-54 | -8.615850e-47 |
| Msa0996980 | Msa1339490 | 0.801362 | 9.331615e-49 | -8.615850e-47 |
| Msa1006940 | Msa1339490 | 0.850432 | 1.704983e-60 | -8.615850e-47 |
| Msa1007930 | Msa1339490 | 0.802730 | 4.883461e-49 | -8.615850e-47 |
| Msa1024480 | Msa1339490 | 0.827345 | 1.647244e-54 | -8.615850e-47 |
| Msa1036020 | Msa1339490 | 0.817187 | 3.756393e-52 | -8.615850e-47 |
| Msa1046220 | Msa1339490 | 0.807781 | 4.273714e-50 | -8.615850e-47 |
| Msa1061670 | Msa1339490 | 0.840402 | 8.883732e-58 | -8.615850e-47 |
| Msa1061760 | Msa1339490 | 0.805292 | 1.432064e-49 | -8.615850e-47 |
| Msa1064940 | Msa1339490 | 0.813571 | 2.392277e-51 | -8.615850e-47 |
| Msa1075030 | Msa1339490 | 0.818763 | 1.653756e-52 | -8.615850e-47 |
| Msa1076280 | Msa1339490 | 0.803102 | 4.092280e-49 | -8.615850e-47 |
| Msa1076830 | Msa1339490 | 0.808161 | 3.548484e-50 | -8.615850e-47 |
| Msa1083100 | Msa1339490 | 0.822726 | 2.030515e-53 | -8.615850e-47 |
| Msa1087200 | Msa1339490 | 0.802970 | 4.357276e-49 | -8.615850e-47 |
| Msa1099640 | Msa1339490 | 0.824806 | 6.612896e-54 | -8.615850e-47 |
| Msa1100560 | Msa1339490 | 0.807271 | 5.484281e-50 | -8.615850e-47 |
| Msa1106680 | Msa1339490 | 0.801534 | 8.603478e-49 | -8.615850e-47 |
| Msa1106960 | Msa1339490 | 0.829009 | 6.541935e-55 | -8.615850e-47 |
| Msa0243970 | Msa1339490 | 0.835151 | 1.982600e-56 | -8.615850e-47 |
| Msa0243990 | Msa1339490 | 0.839579 | 1.456340e-57 | -8.615850e-47 |
| Msa0244310 | Msa1339490 | 0.816800 | 4.588069e-52 | -8.615850e-47 |
| Msa0269720 | Msa1339490 | 0.810579 | 1.074653e-50 | -8.615850e-47 |
| Msa0278940 | Msa1339490 | 0.819637 | 1.046063e-52 | -8.615850e-47 |
| Msa0336460 | Msa1339490 | 0.800847 | 1.189190e-48 | -8.615850e-47 |
| Msa0336520 | Msa1339490 | 0.804077 | 2.568166e-49 | -8.615850e-47 |
| Msa0336640 | Msa1339490 | 0.814396 | 1.574285e-51 | -8.615850e-47 |
| Msa0356200 | Msa1339490 | 0.852650 | 4.016614e-61 | -8.615850e-47 |
| Msa0356240 | Msa1339490 | 0.821916 | 3.129820e-53 | -8.615850e-47 |
| Msa0356250 | Msa1339490 | 0.853796 | 1.885422e-61 | -8.615850e-47 |
| Msa0356270 | Msa1339490 | 0.800701 | 1.273657e-48 | -8.615850e-47 |
| Msa0356320 | Msa1339490 | 0.856934 | 2.298873e-62 | -8.615850e-47 |
| Msa0356380 | Msa1339490 | 0.841206 | 5.470404e-58 | -8.615850e-47 |
| Msa0356410 | Msa1339490 | 0.847055 | 1.472838e-59 | -8.615850e-47 |
| Msa1115900 | Msa1339490 | 0.838606 | 2.601686e-57 | -8.615850e-47 |
| Msa1122550 | Msa1339490 | 0.801188 | 1.013090e-48 | -8.615850e-47 |
| Msa1136060 | Msa1339490 | 0.802251 | 6.129471e-49 | -8.615850e-47 |
| Msa1148210 | Msa1339490 | 0.802185 | 6.325542e-49 | -8.615850e-47 |
| Msa1150880 | Msa1339490 | 0.806484 | 8.044823e-50 | -8.615850e-47 |
| Msa1160540 | Msa1339490 | 0.820139 | 8.030656e-53 | -8.615850e-47 |
| Msa1162370 | Msa1339490 | 0.813214 | 2.866854e-51 | -8.615850e-47 |
| Msa1164240 | Msa1339490 | 0.805356 | 1.388950e-49 | -8.615850e-47 |
| Msa1179190 | Msa1339490 | 0.826659 | 2.402480e-54 | -8.615850e-47 |
| Msa1187750 | Msa1339490 | 0.808359 | 3.219533e-50 | -8.615850e-47 |
| Msa1190090 | Msa1339490 | 0.804913 | 1.719303e-49 | -8.615850e-47 |
| Msa1191270 | Msa1339490 | 0.800074 | 1.709238e-48 | -8.615850e-47 |
| Msa1220720 | Msa1339490 | 0.801736 | 7.820577e-49 | -8.615850e-47 |
| Msa0487100 | Msa1339490 | 0.816707 | 4.813313e-52 | -8.615850e-47 |
| Msa0491760 | Msa1339490 | 0.811400 | 7.135975e-51 | -8.615850e-47 |
| Msa0491950 | Msa1339490 | 0.801864 | 7.363659e-49 | -8.615850e-47 |
| Msa0493710 | Msa1339490 | 0.803670 | 3.119704e-49 | -8.615850e-47 |
| Msa0531030 | Msa1339490 | 0.803192 | 3.920785e-49 | -8.615850e-47 |
| Msa0531040 | Msa1339490 | 0.812191 | 4.800733e-51 | -8.615850e-47 |
| Msa0531080 | Msa1339490 | 0.813067 | 3.087105e-51 | -8.615850e-47 |
| Msa0532670 | Msa1339490 | 0.806414 | 8.321457e-50 | -8.615850e-47 |
| Msa0533510 | Msa1339490 | 0.802080 | 6.648989e-49 | -8.615850e-47 |
| Msa0535570 | Msa1339490 | 0.818200 | 2.218880e-52 | -8.615850e-47 |
| Msa0543740 | Msa1339490 | 0.801320 | 9.519213e-49 | -8.615850e-47 |
| Msa0548760 | Msa1339490 | 0.804745 | 1.864052e-49 | -8.615850e-47 |
| Msa0549970 | Msa1339490 | 0.827236 | 1.749342e-54 | -8.615850e-47 |
| Msa0587920 | Msa1339490 | 0.819792 | 9.641966e-53 | -8.615850e-47 |
| Msa0587930 | Msa1339490 | 0.800049 | 1.729042e-48 | -8.615850e-47 |
| Msa0589450 | Msa1339490 | 0.823010 | 1.743677e-53 | -8.615850e-47 |
| Msa0589460 | Msa1339490 | 0.832294 | 1.026112e-55 | -8.615850e-47 |
| Msa0589720 | Msa1339490 | 0.817977 | 2.492491e-52 | -8.615850e-47 |
| Msa0591490 | Msa1339490 | 0.822786 | 1.965762e-53 | -8.615850e-47 |
| Msa0848720 | Msa1339490 | -0.800013 | 1.758326e-48 | -8.615850e-47 |
| Msa0854380 | Msa1339490 | 0.808368 | 3.205599e-50 | -8.615850e-47 |
| Msa0863840 | Msa1339490 | 0.819858 | 9.312329e-53 | -8.615850e-47 |
| Msa0863850 | Msa1339490 | 0.802652 | 5.068091e-49 | -8.615850e-47 |
| Msa0863860 | Msa1339490 | 0.804352 | 2.250883e-49 | -8.615850e-47 |
| Msa0864160 | Msa1339490 | 0.809086 | 2.251681e-50 | -8.615850e-47 |
| Msa0886370 | Msa1339490 | 0.810586 | 1.070793e-50 | -8.615850e-47 |
| Msa0893840 | Msa1339490 | 0.801712 | 7.912090e-49 | -8.615850e-47 |
| Msa0896920 | Msa1339490 | 0.840186 | 1.012013e-57 | -8.615850e-47 |
| Msa0896950 | Msa1339490 | 0.807718 | 4.408446e-50 | -8.615850e-47 |
| Msa0913500 | Msa1339490 | 0.800785 | 1.224556e-48 | -8.615850e-47 |
| Msa0913550 | Msa1339490 | 0.814577 | 1.435106e-51 | -8.615850e-47 |
| Msa0951060 | Msa1339490 | 0.819998 | 8.653240e-53 | -8.615850e-47 |
| Msa0962290 | Msa1339490 | 0.804541 | 2.055947e-49 | -8.615850e-47 |
| Msa0971880 | Msa1339490 | 0.801789 | 7.629833e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1339490 | MtrunA17_Chr1g0197801 | 59.786 | 281 | 70 | 4 | 1 | 272 | 1 | 247 | 3.79e-105 | 305 |
| Msa1339490 | MtrunA17_Chr3g0095861 | 51.071 | 280 | 128 | 3 | 1 | 273 | 1 | 278 | 3.63e-91 | 271 |
| Msa1339490 | MtrunA17_Chr3g0095851 | 51.071 | 280 | 128 | 3 | 1 | 273 | 2 | 279 | 3.79e-91 | 271 |
| Msa1339490 | MtrunA17_Chr3g0096161 | 52.222 | 270 | 127 | 2 | 1 | 269 | 1 | 269 | 7.32e-89 | 265 |
| Msa1339490 | MtrunA17_Chr3g0100011 | 56.170 | 235 | 100 | 2 | 21 | 255 | 44 | 275 | 5.13e-88 | 266 |
| Msa1339490 | MtrunA17_Chr3g0100031 | 53.942 | 241 | 108 | 2 | 21 | 261 | 17 | 254 | 3.40e-87 | 260 |
| Msa1339490 | MtrunA17_Chr3g0100021 | 52.743 | 237 | 107 | 3 | 21 | 255 | 5 | 238 | 5.78e-81 | 245 |
| Msa1339490 | MtrunA17_Chr1g0197771 | 49.206 | 252 | 124 | 3 | 14 | 264 | 15 | 263 | 1.37e-70 | 219 |
| Msa1339490 | MtrunA17_Chr3g0087611 | 47.826 | 276 | 126 | 11 | 1 | 264 | 1 | 270 | 4.15e-67 | 210 |
| Msa1339490 | MtrunA17_Chr1g0197791 | 43.357 | 286 | 130 | 10 | 1 | 275 | 1 | 265 | 2.76e-58 | 187 |
| Msa1339490 | MtrunA17_Chr1g0197761 | 43.066 | 274 | 137 | 10 | 1 | 265 | 1 | 264 | 5.85e-58 | 186 |
| Msa1339490 | MtrunA17_Chr8g0367061 | 40.377 | 265 | 130 | 11 | 14 | 262 | 10 | 262 | 1.34e-47 | 159 |
| Msa1339490 | MtrunA17_Chr1g0197821 | 67.857 | 112 | 36 | 0 | 1 | 112 | 1 | 112 | 3.43e-47 | 155 |
| Msa1339490 | MtrunA17_Chr1g0197821 | 77.778 | 63 | 11 | 1 | 213 | 272 | 114 | 176 | 2.45e-22 | 91.3 |
| Msa1339490 | MtrunA17_Chr8g0367051 | 39.259 | 270 | 130 | 12 | 14 | 262 | 10 | 266 | 2.82e-46 | 156 |
| Msa1339490 | MtrunA17_Chr1g0197751 | 48.571 | 175 | 84 | 4 | 94 | 265 | 16 | 187 | 3.38e-45 | 151 |
| Msa1339490 | MtrunA17_Chr5g0411771 | 38.542 | 288 | 137 | 13 | 6 | 261 | 8 | 287 | 4.01e-45 | 153 |
| Msa1339490 | MtrunA17_Chr5g0411751 | 40.562 | 249 | 119 | 11 | 35 | 261 | 38 | 279 | 2.82e-42 | 146 |
| Msa1339490 | MtrunA17_Chr5g0411761 | 39.600 | 250 | 123 | 11 | 33 | 261 | 44 | 286 | 9.66e-42 | 145 |
| Msa1339490 | MtrunA17_Chr5g0411741 | 39.516 | 248 | 122 | 10 | 35 | 261 | 38 | 278 | 1.11e-41 | 144 |
| Msa1339490 | MtrunA17_Chr4g0027601 | 36.567 | 268 | 126 | 7 | 2 | 265 | 6 | 233 | 1.09e-40 | 141 |
| Msa1339490 | MtrunA17_Chr8g0367031 | 39.662 | 237 | 126 | 8 | 36 | 259 | 25 | 257 | 1.22e-40 | 141 |
| Msa1339490 | MtrunA17_Chr8g0345451 | 38.433 | 268 | 149 | 10 | 1 | 261 | 1 | 259 | 1.13e-38 | 136 |
| Msa1339490 | MtrunA17_Chr8g0367041 | 37.553 | 237 | 131 | 8 | 36 | 259 | 25 | 257 | 1.51e-38 | 135 |
| Msa1339490 | MtrunA17_Chr8g0367071 | 36.765 | 272 | 151 | 10 | 11 | 269 | 18 | 281 | 4.62e-38 | 141 |
| Msa1339490 | MtrunA17_Chr4g0011021 | 38.397 | 237 | 134 | 8 | 30 | 262 | 35 | 263 | 9.87e-34 | 123 |
| Msa1339490 | MtrunA17_Chr4g0049601 | 35.926 | 270 | 143 | 12 | 17 | 268 | 17 | 274 | 8.36e-33 | 126 |
| Msa1339490 | MtrunA17_Chr8g0367021 | 39.732 | 224 | 119 | 9 | 49 | 261 | 40 | 258 | 8.85e-32 | 118 |
| Msa1339490 | MtrunA17_Chr4g0027651 | 34.831 | 267 | 128 | 11 | 2 | 261 | 19 | 246 | 1.58e-31 | 118 |
| Msa1339490 | MtrunA17_Chr5g0411731 | 34.959 | 246 | 134 | 11 | 37 | 261 | 35 | 275 | 2.83e-30 | 114 |
| Msa1339490 | MtrunA17_Chr5g0411721 | 33.333 | 243 | 142 | 8 | 35 | 261 | 44 | 282 | 2.94e-29 | 112 |
| Msa1339490 | MtrunA17_Chr7g0274651 | 32.549 | 255 | 151 | 9 | 23 | 262 | 24 | 272 | 3.89e-28 | 113 |
| Msa1339490 | MtrunA17_Chr8g0367011 | 33.935 | 277 | 152 | 12 | 8 | 261 | 27 | 295 | 4.61e-28 | 109 |
| Msa1339490 | MtrunA17_Chr8g0366941 | 35.102 | 245 | 144 | 8 | 35 | 268 | 30 | 270 | 6.69e-28 | 109 |
| Msa1339490 | MtrunA17_Chr7g0274661 | 30.714 | 280 | 171 | 8 | 4 | 266 | 11 | 284 | 8.46e-27 | 109 |
| Msa1339490 | MtrunA17_Chr8g0366991 | 34.959 | 246 | 145 | 8 | 35 | 268 | 124 | 366 | 5.31e-25 | 104 |
| Msa1339490 | MtrunA17_Chr4g0049551 | 33.208 | 265 | 155 | 8 | 5 | 254 | 3 | 260 | 7.39e-25 | 103 |
| Msa1339490 | MtrunA17_Chr4g0049611 | 33.462 | 260 | 144 | 13 | 19 | 262 | 19 | 265 | 2.07e-24 | 102 |
| Msa1339490 | MtrunA17_Chr4g0049581 | 35.354 | 198 | 114 | 6 | 77 | 262 | 90 | 285 | 8.32e-23 | 97.8 |
| Msa1339490 | MtrunA17_Chr3g0104481 | 29.740 | 269 | 135 | 7 | 11 | 269 | 6 | 230 | 5.04e-21 | 89.4 |
| Msa1339490 | MtrunA17_Chr1g0197811 | 49.333 | 75 | 37 | 1 | 103 | 177 | 2 | 75 | 6.67e-20 | 81.6 |
| Msa1339490 | MtrunA17_Chr8g0366981 | 30.827 | 266 | 135 | 11 | 9 | 268 | 4 | 226 | 5.00e-19 | 86.7 |
| Msa1339490 | MtrunA17_Chr4g0049561 | 31.950 | 241 | 146 | 11 | 36 | 260 | 27 | 265 | 5.87e-18 | 83.6 |
| Msa1339490 | MtrunA17_Chr8g0366961 | 35.032 | 157 | 95 | 4 | 35 | 186 | 43 | 197 | 4.89e-17 | 77.8 |
| Msa1339490 | MtrunA17_Chr5g0428851 | 30.935 | 278 | 154 | 13 | 13 | 259 | 7 | 277 | 6.85e-17 | 80.5 |
| Msa1339490 | MtrunA17_Chr1g0170201 | 30.256 | 195 | 116 | 6 | 77 | 259 | 93 | 279 | 5.78e-16 | 77.8 |
| Msa1339490 | MtrunA17_Chr7g0239321 | 29.779 | 272 | 146 | 13 | 16 | 260 | 5 | 258 | 5.85e-14 | 71.6 |
| Msa1339490 | MtrunA17_Chr5g0433941 | 31.797 | 217 | 125 | 8 | 59 | 263 | 49 | 254 | 1.01e-12 | 68.2 |
| Msa1339490 | MtrunA17_Chr5g0407721 | 27.500 | 200 | 120 | 7 | 76 | 255 | 87 | 281 | 3.46e-12 | 66.2 |
| Msa1339490 | MtrunA17_Chr7g0239261 | 27.675 | 271 | 168 | 10 | 16 | 265 | 1 | 264 | 2.88e-11 | 63.5 |
| Msa1339490 | MtrunA17_Chr2g0324171 | 29.297 | 256 | 151 | 11 | 41 | 272 | 29 | 278 | 9.31e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1339490 | AT5G10530.1 | 39.431 | 246 | 122 | 13 | 35 | 262 | 19 | 255 | 1.02e-30 | 120 |
| Msa1339490 | AT5G65600.1 | 34.081 | 223 | 128 | 9 | 35 | 241 | 35 | 254 | 9.11e-23 | 98.2 |
| Msa1339490 | AT5G06740.2 | 30.855 | 269 | 144 | 12 | 16 | 258 | 17 | 269 | 2.35e-17 | 82.0 |
| Msa1339490 | AT5G06740.1 | 30.855 | 269 | 144 | 12 | 16 | 258 | 5 | 257 | 2.36e-17 | 82.0 |
| Msa1339490 | AT5G55830.1 | 30.942 | 223 | 131 | 8 | 57 | 260 | 49 | 267 | 5.63e-15 | 75.1 |
| Msa1339490 | AT5G03140.1 | 30.159 | 252 | 158 | 9 | 17 | 255 | 11 | 257 | 6.58e-15 | 75.1 |
| Msa1339490 | AT4G02410.1 | 27.376 | 263 | 152 | 11 | 31 | 266 | 22 | 272 | 9.81e-13 | 68.6 |
| Msa1339490 | AT4G04960.2 | 29.741 | 232 | 131 | 8 | 36 | 244 | 21 | 243 | 2.95e-12 | 67.0 |
| Msa1339490 | AT3G53810.1 | 27.888 | 251 | 158 | 7 | 29 | 260 | 18 | 264 | 3.15e-12 | 67.0 |
| Msa1339490 | AT4G04960.1 | 29.741 | 232 | 131 | 9 | 36 | 244 | 21 | 243 | 4.25e-12 | 66.6 |
| Msa1339490 | AT4G02420.1 | 27.444 | 266 | 163 | 11 | 17 | 260 | 6 | 263 | 1.45e-11 | 65.1 |
| Msa1339490 | AT5G01560.1 | 29.600 | 250 | 143 | 10 | 38 | 259 | 30 | 274 | 2.53e-11 | 64.3 |
| Msa1339490 | AT2G37710.1 | 26.087 | 253 | 156 | 9 | 31 | 260 | 20 | 264 | 3.34e-11 | 63.9 |
Find 74 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCCAACATGTGTGTATT+TGG | 0.093315 | tig0003352:+3380 | None:intergenic |
| TTTCTTTAAAGAAAATAAAA+TGG | 0.247146 | tig0003352:-3341 | Msa1339490:CDS |
| ACTTCCTTGTAGGGAAATTA+TGG | 0.265257 | tig0003352:+3731 | None:intergenic |
| ATTCAGCACCGGTGCCCATT+TGG | 0.272619 | tig0003352:-3632 | Msa1339490:CDS |
| GAAAAGCTTGCAATATTGTT+TGG | 0.279510 | tig0003352:+3078 | None:intergenic |
| CCCAACAGATCCAAACTATT+TGG | 0.303319 | tig0003352:-3670 | Msa1339490:CDS |
| TTCAGCACCGGTGCCCATTT+GGG | 0.316239 | tig0003352:-3631 | Msa1339490:CDS |
| TAAAGAAAATAAAATGGAAT+AGG | 0.318424 | tig0003352:-3335 | Msa1339490:CDS |
| AGTTGAGTTGCTAGGAATAT+TGG | 0.321296 | tig0003352:+3491 | None:intergenic |
| ATTCCAACATGTGTGTATTT+GGG | 0.336887 | tig0003352:+3381 | None:intergenic |
| AAAAGCTTGCAATATTGTTT+GGG | 0.344232 | tig0003352:+3079 | None:intergenic |
| CATCAGATGTGACAAACTTT+TGG | 0.346785 | tig0003352:+3547 | None:intergenic |
| TGAGTAACACAACAGAAAAT+AGG | 0.348280 | tig0003352:+3847 | None:intergenic |
| GCCCGACCAGCCAAATAGTT+TGG | 0.378898 | tig0003352:+3660 | None:intergenic |
| GCCAAATAGTTTGGATCTGT+TGG | 0.383215 | tig0003352:+3669 | None:intergenic |
| GCCAGTGGTTTCATCCCAAA+TGG | 0.385140 | tig0003352:+3617 | None:intergenic |
| AAATTGAGGCACTTCCTTGT+AGG | 0.404967 | tig0003352:+3721 | None:intergenic |
| TGGGCACCGGTGCTGAATAC+AGG | 0.408005 | tig0003352:+3637 | None:intergenic |
| GGATTTACTATTACTGAAGT+TGG | 0.409756 | tig0003352:+3752 | None:intergenic |
| AAAGAAAATAAAATGGAATA+GGG | 0.416250 | tig0003352:-3334 | Msa1339490:CDS |
| CAAAAGTTTGTCACATCTGA+TGG | 0.426781 | tig0003352:-3546 | Msa1339490:CDS |
| AATTGAGGCACTTCCTTGTA+GGG | 0.429899 | tig0003352:+3722 | None:intergenic |
| AAACCAATCCTTACGGTGTT+CGG | 0.435951 | tig0003352:+3183 | None:intergenic |
| AGCTAAACAACCTTCATTCA+TGG | 0.437782 | tig0003352:-3131 | Msa1339490:CDS |
| ATAGTTGAAAAGGTACCATC+TGG | 0.449708 | tig0003352:+3237 | None:intergenic |
| TCCGCATACAATCCATTTGT+TGG | 0.449749 | tig0003352:-3438 | Msa1339490:CDS |
| GTATTTGGGATCCCACCTAT+TGG | 0.452286 | tig0003352:+3395 | None:intergenic |
| CCAAATAGTTTGGATCTGTT+GGG | 0.452907 | tig0003352:+3670 | None:intergenic |
| TCCAAACTATTTGGCTGGTC+GGG | 0.455927 | tig0003352:-3661 | Msa1339490:CDS |
| ATGGTCTTTCAAGTCAAACT+TGG | 0.459323 | tig0003352:-3112 | Msa1339490:CDS |
| AGTTTGATAGTTATGCCAAT+AGG | 0.461031 | tig0003352:-3410 | Msa1339490:CDS |
| CTTCCGAACACCGTAAGGAT+TGG | 0.469222 | tig0003352:-3186 | Msa1339490:CDS |
| TCAAACTCTACACCAACAAA+TGG | 0.477349 | tig0003352:+3426 | None:intergenic |
| GACTTGAGCAATAGTTGAAA+AGG | 0.492838 | tig0003352:+3227 | None:intergenic |
| TGTCTTAGAGAGATTGTCAT+AGG | 0.497716 | tig0003352:+3281 | None:intergenic |
| ATAAAATGGAATAGGGTGAA+TGG | 0.502888 | tig0003352:-3327 | Msa1339490:CDS |
| AACTCAACTGGTGGAAACCT+TGG | 0.508020 | tig0003352:-3477 | Msa1339490:CDS |
| GGCTATATCCAAGATTCCAT+TGG | 0.512019 | tig0003352:+3695 | None:intergenic |
| GATTCCATTGGATAAAATTG+AGG | 0.512081 | tig0003352:+3707 | None:intergenic |
| ATCCAAACTATTTGGCTGGT+CGG | 0.513232 | tig0003352:-3662 | Msa1339490:CDS |
| CCAGTGGTTTCATCCCAAAT+GGG | 0.521697 | tig0003352:+3618 | None:intergenic |
| TTTCCACCAGTTGAGTTGCT+AGG | 0.525423 | tig0003352:+3483 | None:intergenic |
| ATGAAGGTTGTTTAGCTGAC+CGG | 0.532538 | tig0003352:+3137 | None:intergenic |
| AATATTCCTAGCAACTCAAC+TGG | 0.536663 | tig0003352:-3489 | Msa1339490:CDS |
| GGAATATTGGCTCGATCTTG+TGG | 0.539230 | tig0003352:+3504 | None:intergenic |
| TCGGGCCCTGTATTCAGCAC+CGG | 0.539297 | tig0003352:-3643 | Msa1339490:CDS |
| ACAGATCCAAACTATTTGGC+TGG | 0.541475 | tig0003352:-3666 | Msa1339490:CDS |
| GGGCACCGGTGCTGAATACA+GGG | 0.542627 | tig0003352:+3638 | None:intergenic |
| TTGATAGTTATGCCAATAGG+TGG | 0.543485 | tig0003352:-3407 | Msa1339490:CDS |
| CCCATTTGGGATGAAACCAC+TGG | 0.547396 | tig0003352:-3618 | Msa1339490:CDS |
| ATAGTTTGGATCTGTTGGGT+TGG | 0.547533 | tig0003352:+3674 | None:intergenic |
| ACTTGAAAGACCATGAATGA+AGG | 0.549922 | tig0003352:+3121 | None:intergenic |
| GAATAGGGTGAATGGCGCCT+TGG | 0.550930 | tig0003352:-3319 | Msa1339490:CDS |
| CAGAGCTTCCGAACACCGTA+AGG | 0.561999 | tig0003352:-3191 | Msa1339490:CDS |
| GCTGCCACATCAAGAGGTGC+CGG | 0.566269 | tig0003352:-3156 | Msa1339490:CDS |
| ATCGATGAAACCAAATCAGA+TGG | 0.568016 | tig0003352:+3053 | None:intergenic |
| GTCATGCACTCTGAATGAAA+AGG | 0.571753 | tig0003352:+3572 | None:intergenic |
| GATCCCAAATACACACATGT+TGG | 0.576936 | tig0003352:-3384 | Msa1339490:CDS |
| AAATCCATAATTTCCCTACA+AGG | 0.579177 | tig0003352:-3735 | Msa1339490:CDS |
| ATTCCTAGCAACTCAACTGG+TGG | 0.582588 | tig0003352:-3486 | Msa1339490:CDS |
| ACTGAAGTTGGTGATGTCGA+AGG | 0.592142 | tig0003352:+3764 | None:intergenic |
| GAAGCTCGCCACGTTGCCAG+TGG | 0.595816 | tig0003352:+3602 | None:intergenic |
| GTTTCATCCCAAATGGGCAC+CGG | 0.596050 | tig0003352:+3624 | None:intergenic |
| TGATAGTTATGCCAATAGGT+GGG | 0.619156 | tig0003352:-3406 | Msa1339490:CDS |
| ATTTGTTGGAAAGAAAGCCA+TGG | 0.619705 | tig0003352:+3875 | None:intergenic |
| GTGGTTGTATCTTACCCAGA+TGG | 0.625936 | tig0003352:-3252 | Msa1339490:CDS |
| CTGACCGGCACCTCTTGATG+TGG | 0.630323 | tig0003352:+3152 | None:intergenic |
| GCTTGCAATATTGTTTGGGG+TGG | 0.636102 | tig0003352:+3083 | None:intergenic |
| AAAGCTTGCAATATTGTTTG+GGG | 0.645833 | tig0003352:+3080 | None:intergenic |
| TAGTTGAAAAGGTACCATCT+GGG | 0.650948 | tig0003352:+3238 | None:intergenic |
| TCTCTCTAAGACATTGAATG+TGG | 0.660926 | tig0003352:-3271 | Msa1339490:CDS |
| ACCAACAAATGGATTGTATG+CGG | 0.667112 | tig0003352:+3437 | None:intergenic |
| GGAGATATTTACATCGACCA+AGG | 0.682054 | tig0003352:+3302 | None:intergenic |
| GGATGAAACCACTGGCAACG+TGG | 0.707919 | tig0003352:-3610 | Msa1339490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCTTTAAAGAAAATAAAA+TGG | - | tig0003352:3600-3619 | Msa1339490:CDS | 10.0% |
| !!! | TTTCTTTAAAGAAAATAAAA+TGG | - | tig0003352:3600-3619 | Msa1339490:CDS | 10.0% |
| !! | TAAAGAAAATAAAATGGAAT+AGG | - | tig0003352:3606-3625 | Msa1339490:CDS | 15.0% |
| !! | AAAGAAAATAAAATGGAATA+GGG | - | tig0003352:3607-3626 | Msa1339490:CDS | 15.0% |
| !! | TAAAGAAAATAAAATGGAAT+AGG | - | tig0003352:3606-3625 | Msa1339490:CDS | 15.0% |
| !! | AAAGAAAATAAAATGGAATA+GGG | - | tig0003352:3607-3626 | Msa1339490:CDS | 15.0% |
| !!! | GAAAATAGGTTTTGATTTGT+TGG | + | tig0003352:3083-3102 | None:intergenic | 25.0% |
| !! | AATTTTATCCAATGGAATCT+TGG | - | tig0003352:3238-3257 | Msa1339490:CDS | 25.0% |
| ! | AAAAGCTTGCAATATTGTTT+GGG | + | tig0003352:3865-3884 | None:intergenic | 25.0% |
| !!! | GAAAATAGGTTTTGATTTGT+TGG | + | tig0003352:3083-3102 | None:intergenic | 25.0% |
| !! | AATTTTATCCAATGGAATCT+TGG | - | tig0003352:3238-3257 | Msa1339490:CDS | 25.0% |
| ! | AAAAGCTTGCAATATTGTTT+GGG | + | tig0003352:3865-3884 | None:intergenic | 25.0% |
| TGAGTAACACAACAGAAAAT+AGG | + | tig0003352:3097-3116 | None:intergenic | 30.0% | |
| GGATTTACTATTACTGAAGT+TGG | + | tig0003352:3192-3211 | None:intergenic | 30.0% | |
| AAATCCATAATTTCCCTACA+AGG | - | tig0003352:3206-3225 | Msa1339490:CDS | 30.0% | |
| GATTCCATTGGATAAAATTG+AGG | + | tig0003352:3237-3256 | None:intergenic | 30.0% | |
| ! | AGTTTTCATCAACAATTCCA+AGG | + | tig0003352:3484-3503 | None:intergenic | 30.0% |
| ! | AGTTTGATAGTTATGCCAAT+AGG | - | tig0003352:3531-3550 | Msa1339490:CDS | 30.0% |
| ATTCCAACATGTGTGTATTT+GGG | + | tig0003352:3563-3582 | None:intergenic | 30.0% | |
| AATTCCAACATGTGTGTATT+TGG | + | tig0003352:3564-3583 | None:intergenic | 30.0% | |
| ATAAAATGGAATAGGGTGAA+TGG | - | tig0003352:3614-3633 | Msa1339490:CDS | 30.0% | |
| AAAGCTTGCAATATTGTTTG+GGG | + | tig0003352:3864-3883 | None:intergenic | 30.0% | |
| GAAAAGCTTGCAATATTGTT+TGG | + | tig0003352:3866-3885 | None:intergenic | 30.0% | |
| TGAGTAACACAACAGAAAAT+AGG | + | tig0003352:3097-3116 | None:intergenic | 30.0% | |
| GGATTTACTATTACTGAAGT+TGG | + | tig0003352:3192-3211 | None:intergenic | 30.0% | |
| AAATCCATAATTTCCCTACA+AGG | - | tig0003352:3206-3225 | Msa1339490:CDS | 30.0% | |
| GATTCCATTGGATAAAATTG+AGG | + | tig0003352:3237-3256 | None:intergenic | 30.0% | |
| ! | AGTTTTCATCAACAATTCCA+AGG | + | tig0003352:3484-3503 | None:intergenic | 30.0% |
| ! | AGTTTGATAGTTATGCCAAT+AGG | - | tig0003352:3531-3550 | Msa1339490:CDS | 30.0% |
| ATTCCAACATGTGTGTATTT+GGG | + | tig0003352:3563-3582 | None:intergenic | 30.0% | |
| AATTCCAACATGTGTGTATT+TGG | + | tig0003352:3564-3583 | None:intergenic | 30.0% | |
| ATAAAATGGAATAGGGTGAA+TGG | - | tig0003352:3614-3633 | Msa1339490:CDS | 30.0% | |
| AAAGCTTGCAATATTGTTTG+GGG | + | tig0003352:3864-3883 | None:intergenic | 30.0% | |
| GAAAAGCTTGCAATATTGTT+TGG | + | tig0003352:3866-3885 | None:intergenic | 30.0% | |
| !!! | GAAGGAAACTGTTTTTTGTG+AGG | + | tig0003352:3162-3181 | None:intergenic | 35.0% |
| ACTTCCTTGTAGGGAAATTA+TGG | + | tig0003352:3213-3232 | None:intergenic | 35.0% | |
| ! | AGTGCCTCAATTTTATCCAA+TGG | - | tig0003352:3230-3249 | Msa1339490:CDS | 35.0% |
| CCAAATAGTTTGGATCTGTT+GGG | + | tig0003352:3274-3293 | None:intergenic | 35.0% | |
| ! | CATCAGATGTGACAAACTTT+TGG | + | tig0003352:3397-3416 | None:intergenic | 35.0% |
| CAAAAGTTTGTCACATCTGA+TGG | - | tig0003352:3395-3414 | Msa1339490:CDS | 35.0% | |
| ! | AGTTGAGTTGCTAGGAATAT+TGG | + | tig0003352:3453-3472 | None:intergenic | 35.0% |
| AATATTCCTAGCAACTCAAC+TGG | - | tig0003352:3452-3471 | Msa1339490:CDS | 35.0% | |
| !! | ACCAACAAATGGATTGTATG+CGG | + | tig0003352:3507-3526 | None:intergenic | 35.0% |
| TCAAACTCTACACCAACAAA+TGG | + | tig0003352:3518-3537 | None:intergenic | 35.0% | |
| ! | TTGATAGTTATGCCAATAGG+TGG | - | tig0003352:3534-3553 | Msa1339490:CDS | 35.0% |
| TGATAGTTATGCCAATAGGT+GGG | - | tig0003352:3535-3554 | Msa1339490:CDS | 35.0% | |
| TGTCTTAGAGAGATTGTCAT+AGG | + | tig0003352:3663-3682 | None:intergenic | 35.0% | |
| !! | TCTCTCTAAGACATTGAATG+TGG | - | tig0003352:3670-3689 | Msa1339490:CDS | 35.0% |
| !! | TAGTTGAAAAGGTACCATCT+GGG | + | tig0003352:3706-3725 | None:intergenic | 35.0% |
| !! | ATAGTTGAAAAGGTACCATC+TGG | + | tig0003352:3707-3726 | None:intergenic | 35.0% |
| GACTTGAGCAATAGTTGAAA+AGG | + | tig0003352:3717-3736 | None:intergenic | 35.0% | |
| AGCAGAAAAACCAATCCTTA+CGG | + | tig0003352:3768-3787 | None:intergenic | 35.0% | |
| AGCTAAACAACCTTCATTCA+TGG | - | tig0003352:3810-3829 | Msa1339490:CDS | 35.0% | |
| ACTTGAAAGACCATGAATGA+AGG | + | tig0003352:3823-3842 | None:intergenic | 35.0% | |
| ! | ATGGTCTTTCAAGTCAAACT+TGG | - | tig0003352:3829-3848 | Msa1339490:CDS | 35.0% |
| !!! | GAAGGAAACTGTTTTTTGTG+AGG | + | tig0003352:3162-3181 | None:intergenic | 35.0% |
| ACTTCCTTGTAGGGAAATTA+TGG | + | tig0003352:3213-3232 | None:intergenic | 35.0% | |
| ! | AGTGCCTCAATTTTATCCAA+TGG | - | tig0003352:3230-3249 | Msa1339490:CDS | 35.0% |
| CCAAATAGTTTGGATCTGTT+GGG | + | tig0003352:3274-3293 | None:intergenic | 35.0% | |
| ! | CATCAGATGTGACAAACTTT+TGG | + | tig0003352:3397-3416 | None:intergenic | 35.0% |
| CAAAAGTTTGTCACATCTGA+TGG | - | tig0003352:3395-3414 | Msa1339490:CDS | 35.0% | |
| ! | AGTTGAGTTGCTAGGAATAT+TGG | + | tig0003352:3453-3472 | None:intergenic | 35.0% |
| AATATTCCTAGCAACTCAAC+TGG | - | tig0003352:3452-3471 | Msa1339490:CDS | 35.0% | |
| !! | ACCAACAAATGGATTGTATG+CGG | + | tig0003352:3507-3526 | None:intergenic | 35.0% |
| TCAAACTCTACACCAACAAA+TGG | + | tig0003352:3518-3537 | None:intergenic | 35.0% | |
| ! | TTGATAGTTATGCCAATAGG+TGG | - | tig0003352:3534-3553 | Msa1339490:CDS | 35.0% |
| TGATAGTTATGCCAATAGGT+GGG | - | tig0003352:3535-3554 | Msa1339490:CDS | 35.0% | |
| TGTCTTAGAGAGATTGTCAT+AGG | + | tig0003352:3663-3682 | None:intergenic | 35.0% | |
| !! | TCTCTCTAAGACATTGAATG+TGG | - | tig0003352:3670-3689 | Msa1339490:CDS | 35.0% |
| !! | TAGTTGAAAAGGTACCATCT+GGG | + | tig0003352:3706-3725 | None:intergenic | 35.0% |
| !! | ATAGTTGAAAAGGTACCATC+TGG | + | tig0003352:3707-3726 | None:intergenic | 35.0% |
| GACTTGAGCAATAGTTGAAA+AGG | + | tig0003352:3717-3736 | None:intergenic | 35.0% | |
| AGCAGAAAAACCAATCCTTA+CGG | + | tig0003352:3768-3787 | None:intergenic | 35.0% | |
| AGCTAAACAACCTTCATTCA+TGG | - | tig0003352:3810-3829 | Msa1339490:CDS | 35.0% | |
| ACTTGAAAGACCATGAATGA+AGG | + | tig0003352:3823-3842 | None:intergenic | 35.0% | |
| ! | ATGGTCTTTCAAGTCAAACT+TGG | - | tig0003352:3829-3848 | Msa1339490:CDS | 35.0% |
| ! | AATTGAGGCACTTCCTTGTA+GGG | + | tig0003352:3222-3241 | None:intergenic | 40.0% |
| ! | AAATTGAGGCACTTCCTTGT+AGG | + | tig0003352:3223-3242 | None:intergenic | 40.0% |
| GGCTATATCCAAGATTCCAT+TGG | + | tig0003352:3249-3268 | None:intergenic | 40.0% | |
| ATAGTTTGGATCTGTTGGGT+TGG | + | tig0003352:3270-3289 | None:intergenic | 40.0% | |
| CCCAACAGATCCAAACTATT+TGG | - | tig0003352:3271-3290 | Msa1339490:CDS | 40.0% | |
| GCCAAATAGTTTGGATCTGT+TGG | + | tig0003352:3275-3294 | None:intergenic | 40.0% | |
| ACAGATCCAAACTATTTGGC+TGG | - | tig0003352:3275-3294 | Msa1339490:CDS | 40.0% | |
| ATCCAAACTATTTGGCTGGT+CGG | - | tig0003352:3279-3298 | Msa1339490:CDS | 40.0% | |
| GTCATGCACTCTGAATGAAA+AGG | + | tig0003352:3372-3391 | None:intergenic | 40.0% | |
| TCCGCATACAATCCATTTGT+TGG | - | tig0003352:3503-3522 | Msa1339490:CDS | 40.0% | |
| GATCCCAAATACACACATGT+TGG | - | tig0003352:3557-3576 | Msa1339490:CDS | 40.0% | |
| GGAGATATTTACATCGACCA+AGG | + | tig0003352:3642-3661 | None:intergenic | 40.0% | |
| AAACCAATCCTTACGGTGTT+CGG | + | tig0003352:3761-3780 | None:intergenic | 40.0% | |
| ATGAAGGTTGTTTAGCTGAC+CGG | + | tig0003352:3807-3826 | None:intergenic | 40.0% | |
| ! | AATTGAGGCACTTCCTTGTA+GGG | + | tig0003352:3222-3241 | None:intergenic | 40.0% |
| ! | AAATTGAGGCACTTCCTTGT+AGG | + | tig0003352:3223-3242 | None:intergenic | 40.0% |
| GGCTATATCCAAGATTCCAT+TGG | + | tig0003352:3249-3268 | None:intergenic | 40.0% | |
| ATAGTTTGGATCTGTTGGGT+TGG | + | tig0003352:3270-3289 | None:intergenic | 40.0% | |
| CCCAACAGATCCAAACTATT+TGG | - | tig0003352:3271-3290 | Msa1339490:CDS | 40.0% | |
| GCCAAATAGTTTGGATCTGT+TGG | + | tig0003352:3275-3294 | None:intergenic | 40.0% | |
| ACAGATCCAAACTATTTGGC+TGG | - | tig0003352:3275-3294 | Msa1339490:CDS | 40.0% | |
| ATCCAAACTATTTGGCTGGT+CGG | - | tig0003352:3279-3298 | Msa1339490:CDS | 40.0% | |
| GTCATGCACTCTGAATGAAA+AGG | + | tig0003352:3372-3391 | None:intergenic | 40.0% | |
| TCCGCATACAATCCATTTGT+TGG | - | tig0003352:3503-3522 | Msa1339490:CDS | 40.0% | |
| GATCCCAAATACACACATGT+TGG | - | tig0003352:3557-3576 | Msa1339490:CDS | 40.0% | |
| GGAGATATTTACATCGACCA+AGG | + | tig0003352:3642-3661 | None:intergenic | 40.0% | |
| AAACCAATCCTTACGGTGTT+CGG | + | tig0003352:3761-3780 | None:intergenic | 40.0% | |
| ATGAAGGTTGTTTAGCTGAC+CGG | + | tig0003352:3807-3826 | None:intergenic | 40.0% | |
| !! | ACTGAAGTTGGTGATGTCGA+AGG | + | tig0003352:3180-3199 | None:intergenic | 45.0% |
| ! | TCCAAACTATTTGGCTGGTC+GGG | - | tig0003352:3280-3299 | Msa1339490:CDS | 45.0% |
| CCAGTGGTTTCATCCCAAAT+GGG | + | tig0003352:3326-3345 | None:intergenic | 45.0% | |
| !! | GGAATATTGGCTCGATCTTG+TGG | + | tig0003352:3440-3459 | None:intergenic | 45.0% |
| ATTCCTAGCAACTCAACTGG+TGG | - | tig0003352:3455-3474 | Msa1339490:CDS | 45.0% | |
| ! | TTTCCACCAGTTGAGTTGCT+AGG | + | tig0003352:3461-3480 | None:intergenic | 45.0% |
| AACTCAACTGGTGGAAACCT+TGG | - | tig0003352:3464-3483 | Msa1339490:CDS | 45.0% | |
| ! | GTATTTGGGATCCCACCTAT+TGG | + | tig0003352:3549-3568 | None:intergenic | 45.0% |
| GTGGTTGTATCTTACCCAGA+TGG | - | tig0003352:3689-3708 | Msa1339490:CDS | 45.0% | |
| ! | TTTTCTGCTGCCACATCAAG+AGG | - | tig0003352:3779-3798 | Msa1339490:CDS | 45.0% |
| GCTTGCAATATTGTTTGGGG+TGG | + | tig0003352:3861-3880 | None:intergenic | 45.0% | |
| !! | ACTGAAGTTGGTGATGTCGA+AGG | + | tig0003352:3180-3199 | None:intergenic | 45.0% |
| ! | TCCAAACTATTTGGCTGGTC+GGG | - | tig0003352:3280-3299 | Msa1339490:CDS | 45.0% |
| CCAGTGGTTTCATCCCAAAT+GGG | + | tig0003352:3326-3345 | None:intergenic | 45.0% | |
| !! | GGAATATTGGCTCGATCTTG+TGG | + | tig0003352:3440-3459 | None:intergenic | 45.0% |
| ATTCCTAGCAACTCAACTGG+TGG | - | tig0003352:3455-3474 | Msa1339490:CDS | 45.0% | |
| ! | TTTCCACCAGTTGAGTTGCT+AGG | + | tig0003352:3461-3480 | None:intergenic | 45.0% |
| AACTCAACTGGTGGAAACCT+TGG | - | tig0003352:3464-3483 | Msa1339490:CDS | 45.0% | |
| ! | GTATTTGGGATCCCACCTAT+TGG | + | tig0003352:3549-3568 | None:intergenic | 45.0% |
| GTGGTTGTATCTTACCCAGA+TGG | - | tig0003352:3689-3708 | Msa1339490:CDS | 45.0% | |
| ! | TTTTCTGCTGCCACATCAAG+AGG | - | tig0003352:3779-3798 | Msa1339490:CDS | 45.0% |
| GCTTGCAATATTGTTTGGGG+TGG | + | tig0003352:3861-3880 | None:intergenic | 45.0% | |
| GTTTCATCCCAAATGGGCAC+CGG | + | tig0003352:3320-3339 | None:intergenic | 50.0% | |
| ! | CCCATTTGGGATGAAACCAC+TGG | - | tig0003352:3323-3342 | Msa1339490:CDS | 50.0% |
| GCCAGTGGTTTCATCCCAAA+TGG | + | tig0003352:3327-3346 | None:intergenic | 50.0% | |
| CTTCCGAACACCGTAAGGAT+TGG | - | tig0003352:3755-3774 | Msa1339490:CDS | 50.0% | |
| GTTTCATCCCAAATGGGCAC+CGG | + | tig0003352:3320-3339 | None:intergenic | 50.0% | |
| ! | CCCATTTGGGATGAAACCAC+TGG | - | tig0003352:3323-3342 | Msa1339490:CDS | 50.0% |
| GCCAGTGGTTTCATCCCAAA+TGG | + | tig0003352:3327-3346 | None:intergenic | 50.0% | |
| CTTCCGAACACCGTAAGGAT+TGG | - | tig0003352:3755-3774 | Msa1339490:CDS | 50.0% | |
| GCCCGACCAGCCAAATAGTT+TGG | + | tig0003352:3284-3303 | None:intergenic | 55.0% | |
| !! | ATTCAGCACCGGTGCCCATT+TGG | - | tig0003352:3309-3328 | Msa1339490:CDS | 55.0% |
| !! | TTCAGCACCGGTGCCCATTT+GGG | - | tig0003352:3310-3329 | Msa1339490:CDS | 55.0% |
| GGATGAAACCACTGGCAACG+TGG | - | tig0003352:3331-3350 | Msa1339490:CDS | 55.0% | |
| GAATAGGGTGAATGGCGCCT+TGG | - | tig0003352:3622-3641 | Msa1339490:CDS | 55.0% | |
| CAGAGCTTCCGAACACCGTA+AGG | - | tig0003352:3750-3769 | Msa1339490:CDS | 55.0% | |
| GCCCGACCAGCCAAATAGTT+TGG | + | tig0003352:3284-3303 | None:intergenic | 55.0% | |
| !! | ATTCAGCACCGGTGCCCATT+TGG | - | tig0003352:3309-3328 | Msa1339490:CDS | 55.0% |
| !! | TTCAGCACCGGTGCCCATTT+GGG | - | tig0003352:3310-3329 | Msa1339490:CDS | 55.0% |
| GGATGAAACCACTGGCAACG+TGG | - | tig0003352:3331-3350 | Msa1339490:CDS | 55.0% | |
| GAATAGGGTGAATGGCGCCT+TGG | - | tig0003352:3622-3641 | Msa1339490:CDS | 55.0% | |
| CAGAGCTTCCGAACACCGTA+AGG | - | tig0003352:3750-3769 | Msa1339490:CDS | 55.0% | |
| TCGGGCCCTGTATTCAGCAC+CGG | - | tig0003352:3298-3317 | Msa1339490:CDS | 60.0% | |
| !! | GGGCACCGGTGCTGAATACA+GGG | + | tig0003352:3306-3325 | None:intergenic | 60.0% |
| !! | TGGGCACCGGTGCTGAATAC+AGG | + | tig0003352:3307-3326 | None:intergenic | 60.0% |
| ! | GCTGCCACATCAAGAGGTGC+CGG | - | tig0003352:3785-3804 | Msa1339490:CDS | 60.0% |
| CTGACCGGCACCTCTTGATG+TGG | + | tig0003352:3792-3811 | None:intergenic | 60.0% | |
| TCGGGCCCTGTATTCAGCAC+CGG | - | tig0003352:3298-3317 | Msa1339490:CDS | 60.0% | |
| !! | GGGCACCGGTGCTGAATACA+GGG | + | tig0003352:3306-3325 | None:intergenic | 60.0% |
| !! | TGGGCACCGGTGCTGAATAC+AGG | + | tig0003352:3307-3326 | None:intergenic | 60.0% |
| ! | GCTGCCACATCAAGAGGTGC+CGG | - | tig0003352:3785-3804 | Msa1339490:CDS | 60.0% |
| CTGACCGGCACCTCTTGATG+TGG | + | tig0003352:3792-3811 | None:intergenic | 60.0% | |
| GAAGCTCGCCACGTTGCCAG+TGG | + | tig0003352:3342-3361 | None:intergenic | 65.0% | |
| GAAGCTCGCCACGTTGCCAG+TGG | + | tig0003352:3342-3361 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0003352 | gene | 3068 | 3895 | 3068 | ID=Msa1339490;Name=Msa1339490 |
| tig0003352 | mRNA | 3068 | 3895 | 3068 | ID=Msa1339490-mRNA-1;Parent=Msa1339490;Name=Msa1339490-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|275 |
| tig0003352 | exon | 3068 | 3895 | 3068 | ID=Msa1339490-mRNA-1:exon:2170;Parent=Msa1339490-mRNA-1 |
| tig0003352 | CDS | 3068 | 3895 | 3068 | ID=Msa1339490-mRNA-1:cds;Parent=Msa1339490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
