AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0126360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0126360 MtrunA17_Chr1g0189361 99.107 224 2 0 1 224 1 224 1.93e-167 460
Msa0126360 MtrunA17_Chr7g0214241 64.651 215 64 2 13 223 14 220 7.10e-96 279
Msa0126360 MtrunA17_Chr7g0234201 73.889 180 47 0 13 192 12 191 6.44e-93 271
Msa0126360 MtrunA17_Chr4g0032201 59.906 212 78 3 12 223 10 214 4.91e-88 259
Msa0126360 MtrunA17_Chr8g0381841 62.887 194 72 0 12 205 15 208 9.46e-87 256
Msa0126360 MtrunA17_Chr3g0123821 57.820 211 86 1 12 222 14 221 2.80e-85 252
Msa0126360 MtrunA17_Chr7g0231131 55.450 211 90 1 12 222 13 219 2.24e-82 244
Msa0126360 MtrunA17_Chr2g0276941 55.556 216 91 2 8 223 9 219 2.76e-82 244
Msa0126360 MtrunA17_Chr1g0174281 55.660 212 91 3 12 222 13 222 5.67e-82 244
Msa0126360 MtrunA17_Chr3g0112681 55.605 223 91 4 1 223 1 215 9.78e-82 243
Msa0126360 MtrunA17_Chr4g0040781 57.075 212 85 3 12 223 11 216 1.35e-80 240
Msa0126360 MtrunA17_Chr2g0283131 56.604 212 86 3 12 223 11 216 3.44e-80 239
Msa0126360 MtrunA17_Chr2g0319951 63.006 173 64 0 12 184 11 183 2.04e-79 237
Msa0126360 MtrunA17_Chr4g0046261 55.189 212 89 3 12 223 11 216 2.99e-79 236
Msa0126360 MtrunA17_Chr2g0315551 54.245 212 91 2 12 223 11 216 1.59e-78 234
Msa0126360 MtrunA17_Chr2g0325091 55.660 212 87 2 12 223 9 213 7.59e-77 230
Msa0126360 MtrunA17_Chr8g0351861 51.869 214 101 1 12 223 14 227 1.31e-76 230
Msa0126360 MtrunA17_Chr8g0346421 59.239 184 74 1 7 190 20 202 1.83e-76 230
Msa0126360 MtrunA17_Chr7g0275991 58.696 184 76 0 12 195 18 201 8.18e-76 228
Msa0126360 MtrunA17_Chr6g0482721 52.582 213 93 3 12 223 10 215 8.52e-69 210
Msa0126360 MtrunA17_Chr8g0392931 51.887 212 97 2 12 223 12 218 2.36e-67 206
Msa0126360 MtrunA17_Chr4g0055651 45.283 212 100 2 12 223 6 201 9.98e-59 184
Msa0126360 MtrunA17_Chr7g0250531 45.283 212 100 3 12 223 6 201 4.70e-57 179
Msa0126360 MtrunA17_Chr2g0290891 43.602 211 115 1 13 223 5 211 1.72e-56 178
Msa0126360 MtrunA17_Chr2g0276931 51.807 166 80 0 12 177 7 172 2.79e-56 177
Msa0126360 MtrunA17_Chr8g0335471 44.811 212 102 3 12 223 6 202 6.37e-56 177
Msa0126360 MtrunA17_Chr1g0182321 42.453 212 111 2 12 222 13 214 1.01e-55 177
Msa0126360 MtrunA17_Chr1g0182301 42.453 212 111 2 12 222 13 214 1.12e-55 176
Msa0126360 MtrunA17_Chr1g0212521 42.326 215 107 4 12 222 13 214 7.99e-55 174
Msa0126360 MtrunA17_Chr6g0458081 44.131 213 113 2 12 223 4 211 8.42e-55 174
Msa0126360 MtrunA17_Chr7g0263071 49.697 165 82 1 12 175 13 177 1.80e-54 173
Msa0126360 MtrunA17_Chr4g0030911 42.453 212 110 3 12 222 13 213 2.48e-54 173
Msa0126360 MtrunA17_Chr8g0349711 44.444 216 113 4 10 223 2 212 3.60e-53 170
Msa0126360 MtrunA17_Chr2g0327911 47.059 170 88 2 8 175 9 178 4.45e-52 167
Msa0126360 MtrunA17_Chr8g0349681 49.412 170 86 0 7 176 377 546 6.82e-51 173
Msa0126360 MtrunA17_Chr8g0349681 44.505 182 98 1 2 183 166 344 6.99e-46 160
Msa0126360 MtrunA17_Chr8g0349681 47.531 162 85 0 10 171 9 170 2.03e-45 159
Msa0126360 MtrunA17_Chr3g0109721 40.385 208 105 2 16 223 12 200 1.32e-48 158
Msa0126360 MtrunA17_Chr5g0433561 38.942 208 108 3 16 223 12 200 4.99e-47 154
Msa0126360 MtrunA17_Chr8g0384311 43.716 183 100 3 12 192 11 192 1.87e-45 150
Msa0126360 MtrunA17_Chr1g0199331 44.099 161 89 1 16 175 33 193 1.63e-44 147
Msa0126360 MtrunA17_Chr7g0265001 40.187 214 113 5 12 223 14 214 3.50e-44 147
Msa0126360 MtrunA17_Chr1g0197331 40.183 219 105 5 12 223 13 212 1.12e-43 145
Msa0126360 MtrunA17_Chr1g0159481 41.026 195 103 4 12 195 15 208 1.96e-43 145
Msa0126360 MtrunA17_Chr1g0180291 41.014 217 104 6 12 222 12 210 3.21e-43 144
Msa0126360 MtrunA17_Chr3g0130271 44.767 172 91 4 12 180 10 180 1.19e-42 143
Msa0126360 MtrunA17_Chr5g0400131 39.490 157 95 0 15 171 10 166 1.29e-40 137
Msa0126360 MtrunA17_Chr4g0055081 38.854 157 96 0 15 171 10 166 2.11e-40 137
Msa0126360 MtrunA17_Chr8g0390561 40.625 160 95 0 16 175 11 170 2.51e-40 137
Msa0126360 MtrunA17_Chr3g0123971 36.313 179 108 1 15 193 10 182 2.79e-40 137
Msa0126360 MtrunA17_Chr8g0382221 38.217 157 97 0 15 171 10 166 1.30e-39 135
Msa0126360 MtrunA17_Chr4g0034871 36.310 168 100 3 14 174 8 175 3.57e-33 119
Msa0126360 MtrunA17_Chr8g0383261 37.725 167 97 2 14 173 12 178 1.15e-32 117
Msa0126360 MtrunA17_Chr1g0201121 37.126 167 98 2 14 173 8 174 5.05e-32 115
Msa0126360 MtrunA17_Chr6g0466301 37.126 167 98 3 14 173 8 174 5.08e-32 115
Msa0126360 MtrunA17_Chr6g0465491 37.126 167 98 3 14 173 8 174 5.08e-32 115
Msa0126360 MtrunA17_Chr2g0331691 35.329 167 101 3 14 173 10 176 2.85e-31 114
Msa0126360 MtrunA17_Chr4g0004661 35.928 167 100 3 14 173 64 230 1.22e-30 113
Msa0126360 MtrunA17_Chr6g0465471 32.990 194 114 5 29 206 5 198 2.81e-24 95.9
Msa0126360 MtrunA17_Chr6g0466161 32.474 194 115 5 29 206 5 198 1.26e-23 94.0
Msa0126360 MtrunA17_Chr3g0138121 30.114 176 117 5 1 175 1 171 1.09e-20 86.7
Msa0126360 MtrunA17_Chr3g0138111 30.114 176 117 5 1 175 1 171 1.18e-20 86.7
Msa0126360 MtrunA17_Chr3g0138101 30.114 176 117 5 1 175 1 171 1.30e-20 86.3
Msa0126360 MtrunA17_Chr6g0466431 36.364 99 54 1 14 112 8 97 2.46e-18 77.0
Msa0126360 MtrunA17_Chr6g0465611 36.364 99 54 1 14 112 8 97 2.46e-18 77.0
Msa0126360 MtrunA17_Chr2g0325101 30.460 174 107 5 14 175 6 177 2.95e-18 79.3
Msa0126360 MtrunA17_Chr4g0037021 30.460 174 107 5 14 175 6 177 4.52e-18 79.0
Msa0126360 MtrunA17_Chr6g0486041 28.421 190 122 5 14 191 6 193 2.63e-17 77.4
Msa0126360 MtrunA17_Chr8g0371501 30.114 176 105 6 14 175 6 177 6.09e-17 75.9
Msa0126360 MtrunA17_Chr5g0405791 30.114 176 105 6 14 175 6 177 1.01e-16 75.5
Msa0126360 MtrunA17_Chr4g0046211 33.065 124 80 3 14 136 6 127 1.41e-16 73.9
Msa0126360 MtrunA17_Chr3g0117931 28.652 178 113 6 10 175 4 179 5.18e-16 73.9
Msa0126360 MtrunA17_Chr1g0178291 32.370 173 107 4 10 182 427 589 3.51e-15 73.9
Msa0126360 MtrunA17_Chr5g0443631 24.862 181 129 3 4 178 93 272 7.44e-14 68.9
Msa0126360 MtrunA17_Chr2g0331841 44.444 72 39 1 83 153 2 73 6.94e-12 59.7
Msa0126360 MtrunA17_Chr1g0188111 33.058 121 75 3 15 134 18 133 9.64e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0126360 AT5G47520.1 85.268 224 28 2 1 223 1 220 1.57e-138 387
Msa0126360 AT2G43130.1 60.811 222 79 2 3 224 1 214 2.66e-95 277
Msa0126360 AT2G31680.1 62.443 221 79 1 3 223 1 217 1.16e-94 276
Msa0126360 AT1G05810.2 61.712 222 80 2 2 223 46 262 1.76e-93 275
Msa0126360 AT1G05810.1 61.538 221 80 2 3 223 1 216 3.05e-93 272
Msa0126360 AT3G07410.1 63.470 219 75 2 6 224 4 217 4.77e-93 272
Msa0126360 AT5G47960.1 58.685 213 81 2 12 222 13 220 1.05e-86 256
Msa0126360 AT5G65270.1 66.667 177 59 0 12 188 15 191 2.52e-86 255
Msa0126360 AT1G07410.1 57.547 212 82 3 12 223 10 213 1.05e-84 251
Msa0126360 AT5G59150.1 57.870 216 86 2 8 223 6 216 1.56e-84 250
Msa0126360 AT4G39990.1 57.277 213 85 3 12 223 15 222 1.67e-84 250
Msa0126360 AT3G12160.1 55.399 213 91 1 12 224 13 221 3.08e-84 249
Msa0126360 AT3G46830.1 57.075 212 86 1 12 223 10 216 9.19e-83 246
Msa0126360 AT3G46830.2 57.075 212 86 1 12 223 10 216 9.19e-83 246
Msa0126360 AT1G09630.1 53.812 223 95 3 1 223 1 215 2.96e-82 244
Msa0126360 AT4G18430.1 55.660 212 88 2 12 223 11 216 2.44e-81 242
Msa0126360 AT5G60860.1 57.075 212 85 2 12 223 11 216 4.35e-81 241
Msa0126360 AT1G16920.1 57.547 212 83 3 12 223 11 215 7.75e-81 241
Msa0126360 AT4G18800.1 55.660 212 85 2 12 223 11 213 3.54e-80 239
Msa0126360 AT1G28550.1 53.704 216 95 2 8 223 7 217 5.38e-78 234
Msa0126360 AT3G15060.1 54.930 213 88 3 12 223 11 216 3.09e-77 232
Msa0126360 AT1G06400.1 54.245 212 90 2 12 223 11 215 3.37e-77 231
Msa0126360 AT5G45750.1 53.302 212 92 2 12 223 11 215 1.22e-76 230
Msa0126360 AT2G33870.1 52.778 216 97 2 8 223 7 217 4.15e-76 229
Msa0126360 AT1G18200.1 52.511 219 98 2 12 224 11 229 1.09e-75 228
Msa0126360 AT1G73640.1 58.470 183 75 1 1 183 1 182 4.39e-73 222
Msa0126360 AT1G01200.1 58.427 178 71 2 12 186 26 203 1.33e-68 211
Msa0126360 AT5G59150.2 54.762 168 71 2 56 223 3 165 3.75e-59 184
Msa0126360 AT1G02130.1 45.283 212 101 3 12 223 6 202 1.60e-58 184
Msa0126360 AT3G11730.1 44.601 213 105 3 12 224 6 205 3.05e-57 181
Msa0126360 AT4G17170.1 43.128 211 116 1 13 223 5 211 9.87e-56 177
Msa0126360 AT4G35860.1 43.662 213 114 2 12 223 4 211 2.41e-55 176
Msa0126360 AT5G03520.1 44.601 213 106 3 12 223 13 214 4.19e-55 175
Msa0126360 AT3G09900.1 43.256 215 108 4 12 223 13 216 2.79e-54 173
Msa0126360 AT3G46060.2 49.412 170 85 1 12 180 13 182 5.49e-54 172
Msa0126360 AT3G46060.3 49.412 170 85 1 12 180 13 182 5.49e-54 172
Msa0126360 AT3G46060.1 49.412 170 85 1 12 180 13 182 5.49e-54 172
Msa0126360 AT3G53610.2 42.523 214 108 4 12 222 13 214 6.19e-54 172
Msa0126360 AT3G53610.3 42.523 214 108 4 12 222 13 214 6.19e-54 172
Msa0126360 AT3G53610.1 42.523 214 108 4 12 222 13 214 6.19e-54 172
Msa0126360 AT5G59840.1 49.697 165 82 1 12 175 13 177 8.66e-54 172
Msa0126360 AT4G17160.1 44.762 210 106 3 13 222 5 204 8.98e-54 172
Msa0126360 AT4G17530.1 43.396 212 104 2 12 223 6 201 9.86e-54 171
Msa0126360 AT5G47200.1 43.662 213 102 3 12 223 6 201 1.15e-53 171
Msa0126360 AT4G19640.1 38.942 208 108 3 16 223 12 200 6.02e-48 157
Msa0126360 AT3G54840.1 45.963 161 86 1 16 175 35 195 1.04e-45 151
Msa0126360 AT3G54840.3 45.625 160 86 1 17 175 2 161 2.05e-45 149
Msa0126360 AT3G54840.2 47.097 155 81 1 16 169 35 189 3.22e-45 149
Msa0126360 AT5G45130.1 42.945 163 93 0 16 178 12 174 5.84e-45 149
Msa0126360 AT5G45130.2 42.857 161 92 0 18 178 22 182 1.37e-43 145
Msa0126360 AT5G03530.2 41.014 217 106 7 12 223 11 210 1.40e-43 145
Msa0126360 AT5G03530.1 41.014 217 106 7 12 223 11 210 1.40e-43 145
Msa0126360 AT1G43890.3 45.783 166 87 3 12 175 11 175 1.08e-42 144
Msa0126360 AT1G43890.1 45.783 166 87 3 12 175 11 175 1.08e-42 144
Msa0126360 AT1G43890.2 45.783 166 87 3 12 175 11 175 1.08e-42 144
Msa0126360 AT4G39890.1 40.506 158 93 1 15 171 10 167 4.97e-42 142
Msa0126360 AT5G03520.2 41.477 176 91 3 49 223 40 204 1.31e-41 140
Msa0126360 AT2G44610.1 39.490 157 95 0 15 171 10 166 1.19e-40 138
Msa0126360 AT5G10260.1 34.450 209 125 3 15 223 10 206 1.33e-40 138
Msa0126360 AT4G35860.2 42.169 166 90 2 58 222 4 164 1.55e-38 131
Msa0126360 AT2G22290.1 36.943 157 99 0 15 171 10 166 1.28e-37 130
Msa0126360 AT3G09910.3 37.788 217 107 6 12 223 11 204 2.43e-37 129
Msa0126360 AT3G09910.1 37.788 217 107 6 12 223 11 204 2.43e-37 129
Msa0126360 AT3G09910.2 37.788 217 107 6 12 223 11 204 2.43e-37 129
Msa0126360 AT4G19640.2 43.846 130 73 0 16 145 12 141 5.42e-37 127
Msa0126360 AT4G19640.3 43.511 131 74 0 16 146 12 142 1.97e-36 127
Msa0126360 AT3G09910.5 39.572 187 104 4 12 193 11 193 4.42e-36 126
Msa0126360 AT3G09910.4 39.572 187 104 4 12 193 11 193 4.42e-36 126
Msa0126360 AT1G22740.1 38.323 167 96 2 14 173 8 174 1.37e-34 122
Msa0126360 AT5G64990.1 35.714 154 99 0 15 168 8 161 2.46e-33 119
Msa0126360 AT1G52280.1 37.647 170 99 4 14 176 8 177 4.02e-33 119
Msa0126360 AT3G18820.1 37.500 168 98 4 14 174 8 175 1.71e-32 117
Msa0126360 AT3G16100.1 37.725 167 97 3 14 173 8 174 6.11e-32 115
Msa0126360 AT4G09720.1 33.641 217 118 5 14 223 8 205 8.30e-31 113
Msa0126360 AT2G21880.1 36.970 165 97 4 14 171 9 173 9.15e-31 113
Msa0126360 AT5G64990.2 34.161 161 99 1 15 168 8 168 1.24e-30 112
Msa0126360 AT4G09720.4 32.883 222 118 5 14 223 8 210 7.95e-30 110
Msa0126360 AT5G39620.1 33.945 218 115 7 15 223 6 203 2.14e-29 109
Msa0126360 AT4G09720.3 32.456 228 117 5 14 223 8 216 4.95e-29 108
Msa0126360 AT1G49300.2 35.152 165 100 4 14 171 8 172 5.31e-28 105
Msa0126360 AT1G49300.1 35.152 165 100 4 14 171 8 172 5.31e-28 105
Msa0126360 AT5G46025.1 47.573 103 53 1 76 177 6 108 3.03e-25 95.9
Msa0126360 AT2G21880.4 35.135 148 89 4 31 171 1 148 1.14e-22 91.3
Msa0126360 AT2G21880.3 35.135 148 89 4 31 171 1 148 1.14e-22 91.3
Msa0126360 AT4G09720.6 33.690 187 98 5 44 223 4 171 1.42e-22 90.5
Msa0126360 AT4G09720.5 33.690 187 98 5 44 223 4 171 1.42e-22 90.5
Msa0126360 AT4G09720.2 33.690 187 98 5 44 223 4 171 1.42e-22 90.5
Msa0126360 AT5G55080.1 28.571 175 121 3 1 175 1 171 5.95e-22 90.5
Msa0126360 AT2G21880.2 32.121 165 97 5 14 171 9 165 5.38e-21 87.4
Msa0126360 AT2G44690.1 32.222 180 108 5 14 181 18 195 1.12e-20 86.7
Msa0126360 AT5G20020.1 31.053 190 117 7 1 189 1 177 1.21e-20 86.7
Msa0126360 AT5G20010.1 31.053 190 117 7 1 189 1 177 1.44e-20 86.7
Msa0126360 AT5G55190.1 30.114 176 117 5 1 175 1 171 1.87e-20 86.3
Msa0126360 AT4G35020.1 31.034 174 106 6 14 175 6 177 1.91e-17 77.8
Msa0126360 AT4G35020.2 31.034 174 106 6 14 175 6 177 1.91e-17 77.8
Msa0126360 AT4G35020.3 31.034 174 106 6 14 175 6 177 1.91e-17 77.8
Msa0126360 AT5G45970.1 30.233 172 106 5 14 173 6 175 2.65e-17 77.4
Msa0126360 AT4G28950.1 29.050 179 115 5 14 182 6 182 4.29e-17 77.0
Msa0126360 AT1G20090.1 30.460 174 107 6 14 175 5 176 5.46e-17 76.6
Msa0126360 AT5G62880.1 29.213 178 112 5 14 179 8 183 5.70e-17 77.0
Msa0126360 AT1G75840.1 29.885 174 108 6 14 175 6 177 6.85e-17 76.3
Msa0126360 AT3G48040.1 29.310 174 109 5 14 175 8 179 1.23e-16 75.9
Msa0126360 AT3G51300.1 30.233 172 106 6 16 175 8 177 1.81e-16 75.1
Msa0126360 AT4G35950.1 29.310 174 109 6 14 175 6 177 3.68e-16 74.3
Msa0126360 AT2G17800.2 29.310 174 109 6 14 175 6 177 5.12e-16 73.9
Msa0126360 AT2G17800.1 29.310 174 109 6 14 175 6 177 5.12e-16 73.9
Msa0126360 AT3G48040.2 29.299 157 97 5 14 158 8 162 3.82e-14 68.6
Msa0126360 AT5G62880.2 28.662 157 98 5 14 158 8 162 2.66e-13 66.6
Msa0126360 AT4G35020.4 32.456 114 74 3 16 128 8 119 5.85e-12 62.0
Msa0126360 AT4G35020.5 32.456 114 74 3 16 128 8 119 5.85e-12 62.0
Msa0126360 AT3G22950.1 31.405 121 77 3 15 134 18 133 4.15e-11 60.5
Msa0126360 AT3G22950.2 31.405 121 77 3 15 134 18 133 4.15e-11 60.5

Find 96 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCACAAGGTTTGTTCTTTA+TGG 0.121880 1_3:-55442383 Msa0126360:CDS
ATTGATTGGGTTTGGAAAAT+TGG 0.154373 1_3:+55446876 None:intergenic
CCTATAGTTGACTTTGAATT+AGG 0.178199 1_3:+55443545 None:intergenic
ATGTTTGCTCAAAGGAATTT+TGG 0.219236 1_3:-55442055 Msa0126360:three_prime_UTR
CCGTTACTTCTGCATATTAT+AGG 0.220427 1_3:-55443433 Msa0126360:CDS
GCACTTCAAGCACAATTAAA+AGG 0.245552 1_3:-55442016 Msa0126360:three_prime_UTR
TTAAAATAAGAACATAGTTT+TGG 0.261578 1_3:+55442129 None:intergenic
TCTGAAAAGTTTGATTCATT+TGG 0.283794 1_3:-55443980 Msa0126360:five_prime_UTR
CGTTACTTCTGCATATTATA+GGG 0.294694 1_3:-55443432 Msa0126360:CDS
AAAGGGTTGTTGTTCGAAAT+AGG 0.304511 1_3:-55442170 Msa0126360:exon
AAAATGCCGCTAGGTTATTC+AGG 0.313023 1_3:-55442088 Msa0126360:three_prime_UTR
GGGTGCAGTTGGAGCACTTC+TGG 0.313947 1_3:-55443411 Msa0126360:CDS
GATGCTTCCTGGATTGAAAA+TGG 0.324916 1_3:-55442247 Msa0126360:CDS
TAAACAACCACCATGGATTC+TGG 0.326682 1_3:+55443740 None:intergenic
GAAGGAGGAAAGGGATTGAT+TGG 0.332599 1_3:+55446862 None:intergenic
AGGAAGTTAAAGCGCAGATA+TGG 0.333773 1_3:-55443484 Msa0126360:CDS
GGAAAGGGATTGATTGGGTT+TGG 0.343082 1_3:+55446868 None:intergenic
TGGGAACAAGTCAGATCTTA+AGG 0.381456 1_3:-55442449 Msa0126360:CDS
TAAAGAGTTGAAGGGTAAGT+TGG 0.383508 1_3:-55445656 Msa0126360:five_prime_UTR
TCAAGAAAGATGATGCTTCC+TGG 0.401349 1_3:-55442258 Msa0126360:CDS
CCTAATTCAAAGTCAACTAT+AGG 0.411802 1_3:-55443545 Msa0126360:CDS
GATTCATTTGGACAGAGGTC+TGG 0.415908 1_3:-55443968 Msa0126360:five_prime_UTR
CTTGAGACATCATAACCTTC+CGG 0.418307 1_3:+55442284 None:intergenic
CACCCAACTGTTGCTTCATA+AGG 0.425187 1_3:-55443913 Msa0126360:intron
ATCGGAAAGTCAGCAACTCT+TGG 0.429868 1_3:-55443697 Msa0126360:five_prime_UTR
AACGTTGTCACAATACTTGT+TGG 0.431302 1_3:-55442469 Msa0126360:CDS
TTGATATTATAAAGAGTTGA+AGG 0.451197 1_3:-55445665 Msa0126360:five_prime_UTR
AAGGAGGAAAGGGATTGATT+GGG 0.465825 1_3:+55446863 None:intergenic
ACAAGGAGAGAAGTTGTTTG+AGG 0.470536 1_3:-55445611 Msa0126360:intron
CGCAGATATGGGACACAGCT+GGG 0.471236 1_3:-55443472 Msa0126360:CDS
GCGCAGATATGGGACACAGC+TGG 0.472726 1_3:-55443473 Msa0126360:CDS
GGAAGTTAAAGCGCAGATAT+GGG 0.487077 1_3:-55443483 Msa0126360:CDS
ACGTTGTCACAATACTTGTT+GGG 0.487177 1_3:-55442468 Msa0126360:CDS
TGATCTTAATGTTTGCTCAA+AGG 0.487616 1_3:-55442063 Msa0126360:three_prime_UTR
ATTTACTCGCAAGATTTGCC+AGG 0.491537 1_3:-55443580 Msa0126360:CDS
TAATTGGTGATTCAGCTGTT+GGG 0.495291 1_3:-55443610 Msa0126360:CDS
TCGGAAAGTCAGCAACTCTT+GGG 0.497162 1_3:-55443696 Msa0126360:five_prime_UTR
GCATATTATAGGGGTGCAGT+TGG 0.498462 1_3:-55443422 Msa0126360:CDS
TTCTGGTATATGACATCAGC+AGG 0.502132 1_3:-55443394 Msa0126360:CDS
TTAATTGGTGATTCAGCTGT+TGG 0.515554 1_3:-55443611 Msa0126360:CDS
CGTCAAACGTTTGATAGCAT+TGG 0.518334 1_3:-55443371 Msa0126360:CDS
GTTGATTTGTTTCTACCCAT+CGG 0.520027 1_3:-55443715 Msa0126360:five_prime_UTR
CTACCTTATGAAGCAACAGT+TGG 0.523265 1_3:+55443910 None:intergenic
TGGCGTCACTTCTCATTCTG+AGG 0.526114 1_3:+55441907 None:intergenic
TACCTTATGAAGCAACAGTT+GGG 0.531661 1_3:+55443911 None:intergenic
AAGGGTAAGTTGGAGTTCAA+AGG 0.540037 1_3:-55445646 Msa0126360:five_prime_UTR
TATGCGATTGAAGGAGGAAA+GGG 0.541301 1_3:+55446853 None:intergenic
AAATCAAATGAGAGAGAGAA+GGG 0.541690 1_3:+55446909 None:intergenic
CAAATCAAATGAGAGAGAGA+AGG 0.544779 1_3:+55446908 None:intergenic
TGATGCTGATATGCGATTGA+AGG 0.550236 1_3:+55446844 None:intergenic
GAAGGGGATCGATCAGCAGA+AGG 0.552374 1_3:-55442202 Msa0126360:CDS
ATTGAGAAAGCCAGAATCCA+TGG 0.554598 1_3:-55443750 Msa0126360:five_prime_UTR
ACTGTTGTTCTACAACAAGA+AGG 0.557959 1_3:-55442220 Msa0126360:CDS
AGCATCATCATTTCATATCA+CGG 0.559041 1_3:-55446828 Msa0126360:intron
AAGAGTTGCTGACTTTCCGA+TGG 0.561131 1_3:+55443699 None:intergenic
ATTAGGATAAAATTCATCCC+TGG 0.561389 1_3:+55443562 None:intergenic
TGATATTATAAAGAGTTGAA+GGG 0.567100 1_3:-55445664 Msa0126360:five_prime_UTR
CGTTTGATAGCATTGGTCGA+TGG 0.567811 1_3:-55443364 Msa0126360:CDS
CTGTTGTTCTACAACAAGAA+GGG 0.571816 1_3:-55442219 Msa0126360:CDS
GGGACACAGCTGGGCAAGAG+AGG 0.572066 1_3:-55443463 Msa0126360:CDS
AAATCTACAACATATTAAGC+CGG 0.576659 1_3:-55442303 Msa0126360:CDS
AGGGGATCGATCAGCAGAAG+GGG 0.577182 1_3:-55442200 Msa0126360:CDS
CAACTCTTGGGACTAGCAGA+TGG 0.583986 1_3:-55443684 Msa0126360:exon
ATATGCGATTGAAGGAGGAA+AGG 0.587575 1_3:+55446852 None:intergenic
GTCAGATCTTAAGGATGCGA+GGG 0.590058 1_3:-55442440 Msa0126360:CDS
AAGGGGATCGATCAGCAGAA+GGG 0.592624 1_3:-55442201 Msa0126360:CDS
GGTACCTACGACGGAAGGCA+AGG 0.594987 1_3:-55442416 Msa0126360:CDS
GTTACTTCTGCATATTATAG+GGG 0.598910 1_3:-55443431 Msa0126360:CDS
AGGGAGGTACCTACGACGGA+AGG 0.599263 1_3:-55442421 Msa0126360:CDS
TAATGAAGAAGAGAAGACAG+AGG 0.611987 1_3:-55443654 Msa0126360:CDS
AAATAAATCACATACTAGAA+CGG 0.614465 1_3:-55446940 Msa0126360:five_prime_UTR
GACAGAGGTCTGGATGCTGA+TGG 0.614809 1_3:-55443958 Msa0126360:five_prime_UTR
AGAGTTGCTGACTTTCCGAT+GGG 0.617913 1_3:+55443700 None:intergenic
AAAGGACTGAGGGGAAAACA+AGG 0.618996 1_3:-55445628 Msa0126360:five_prime_UTR
TGTTGTTCTACAACAAGAAG+GGG 0.621100 1_3:-55442218 Msa0126360:CDS
CCTATAATATGCAGAAGTAA+CGG 0.621105 1_3:+55443433 None:intergenic
AACGCCTTGCCTTCCGTCGT+AGG 0.621241 1_3:+55442412 None:intergenic
CTACAACATATTAAGCCGGA+AGG 0.622382 1_3:-55442299 Msa0126360:CDS
TTTACTCGCAAGATTTGCCA+GGG 0.623585 1_3:-55443579 Msa0126360:CDS
AGTTTGATTCATTTGGACAG+AGG 0.626927 1_3:-55443973 Msa0126360:five_prime_UTR
AGTCAGATCTTAAGGATGCG+AGG 0.626993 1_3:-55442441 Msa0126360:CDS
GTTGGAGTTCAAAGGACTGA+GGG 0.629671 1_3:-55445638 Msa0126360:five_prime_UTR
AGATCTTAAGGATGCGAGGG+AGG 0.630674 1_3:-55442437 Msa0126360:CDS
AAGGCGTTAGCTGAGGCACA+AGG 0.638041 1_3:-55442397 Msa0126360:CDS
AGAGGTCTGGATGCTGATGG+TGG 0.638056 1_3:-55443955 Msa0126360:five_prime_UTR
TAAATCACATACTAGAACGG+TGG 0.638714 1_3:-55446937 Msa0126360:five_prime_UTR
GGAAGGCAAGGCGTTAGCTG+AGG 0.641771 1_3:-55442404 Msa0126360:CDS
CCAAACCTGAAAATGCCGCT+AGG 0.648028 1_3:-55442097 Msa0126360:three_prime_UTR
CTCAAATAATTAATACTCCG+AGG 0.656544 1_3:-55446988 Msa0126360:five_prime_UTR
TCAACAATAAACAACCACCA+TGG 0.659524 1_3:+55443733 None:intergenic
TGCTGATATGCGATTGAAGG+AGG 0.673397 1_3:+55446847 None:intergenic
AGTTGGAGTTCAAAGGACTG+AGG 0.679109 1_3:-55445639 Msa0126360:five_prime_UTR
TTGGAGTTCAAAGGACTGAG+GGG 0.715065 1_3:-55445637 Msa0126360:five_prime_UTR
ATCAATCCTGAATAACCTAG+CGG 0.716390 1_3:+55442082 None:intergenic
TGCGAGGGAGGTACCTACGA+CGG 0.720020 1_3:-55442425 Msa0126360:CDS
GAGAAAGCCAGAATCCATGG+TGG 0.772264 1_3:-55443747 Msa0126360:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAAAAATCATATAAAAAAT+AGG + chr1_3:55442770-55442789 None:intergenic 10.0%
!!! TTTTTTATATGATTTTTAGT+AGG - chr1_3:55442771-55442790 Msa0126360:intron 10.0%
!! AGTTTGAAAAAAAAAAAAAA+AGG + chr1_3:55443749-55443768 None:intergenic 10.0%
!!! TAATCTTAAGATTTATTTTT+TGG - chr1_3:55445031-55445050 Msa0126360:intron 10.0%
!!! AATTTTGTTTATTTACATAT+AGG + chr1_3:55445786-55445805 None:intergenic 10.0%
!! AAAAAAAAAAAAAACGTATA+TGG + chr1_3:55446055-55446074 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTAAGAAG+GGG - chr1_3:55446069-55446088 Msa0126360:intron 10.0%
!! TAATTATTTGTATATACTTT+AGG - chr1_3:55446113-55446132 Msa0126360:intron 10.0%
!! AATTATTTGTATATACTTTA+GGG - chr1_3:55446114-55446133 Msa0126360:intron 10.0%
!! ATATAATAATGAAAGAAAGA+TGG + chr1_3:55442246-55442265 None:intergenic 15.0%
!! AATAAATGTACAAAATTAGT+TGG - chr1_3:55442334-55442353 Msa0126360:CDS 15.0%
!!! ATGATGAAACAAATATTTTT+GGG - chr1_3:55443840-55443859 Msa0126360:intron 15.0%
!! AAGAATTATGTAAAATTGAA+TGG - chr1_3:55444773-55444792 Msa0126360:intron 15.0%
!! GCAAAAAAAAAAAAAAAAAC+AGG + chr1_3:55446321-55446340 None:intergenic 15.0%
!!! TTAAAATAAGAACATAGTTT+TGG + chr1_3:55446784-55446803 None:intergenic 15.0%
!! AAATAAATCACATACTAGAA+CGG - chr1_3:55441970-55441989 Msa0126360:three_prime_UTR 20.0%
!! ACAATGAATGAATGAAATTT+GGG + chr1_3:55442171-55442190 None:intergenic 20.0%
!! AACAATGAATGAATGAAATT+TGG + chr1_3:55442172-55442191 None:intergenic 20.0%
!! TTGATATTATAAAGAGTTGA+AGG - chr1_3:55443245-55443264 Msa0126360:intron 20.0%
!! TGATATTATAAAGAGTTGAA+GGG - chr1_3:55443246-55443265 Msa0126360:intron 20.0%
!! AATAACTATCAACCTTAATT+TGG - chr1_3:55443641-55443660 Msa0126360:CDS 20.0%
!!! GATGATGAAACAAATATTTT+TGG - chr1_3:55443839-55443858 Msa0126360:intron 20.0%
!!! TGATGAAACAAATATTTTTG+GGG - chr1_3:55443841-55443860 Msa0126360:intron 20.0%
!!! AATAAGTTGATAACATTTTC+AGG + chr1_3:55443924-55443943 None:intergenic 20.0%
!! CACATTAATATAATAATTGC+AGG - chr1_3:55444342-55444361 Msa0126360:intron 20.0%
!! TGGTGATAGTTATAAATTTA+AGG - chr1_3:55444683-55444702 Msa0126360:intron 20.0%
!!! CAATTAAGACAATTTTGAAA+AGG + chr1_3:55445286-55445305 None:intergenic 20.0%
!!! CTTTTCAAAATTGTCTTAAT+TGG - chr1_3:55445284-55445303 Msa0126360:intron 20.0%
!!! TAATTTCCATTTTTTGAGTT+TGG + chr1_3:55445400-55445419 None:intergenic 20.0%
!! ACTCAAAAAATGGAAATTAA+CGG - chr1_3:55445401-55445420 Msa0126360:intron 20.0%
!! AAAGAACAAGAAAAATTTCA+AGG + chr1_3:55445622-55445641 None:intergenic 20.0%
!!! AACTTTAGAGATTAAATTGA+GGG + chr1_3:55445882-55445901 None:intergenic 20.0%
!!! AAACTTTAGAGATTAAATTG+AGG + chr1_3:55445883-55445902 None:intergenic 20.0%
!!! AAAAACTTTAGAAACTAAGT+TGG + chr1_3:55445918-55445937 None:intergenic 20.0%
!!! TAAGCAATATTTGAAGTATA+TGG - chr1_3:55445946-55445965 Msa0126360:intron 20.0%
!! AGTCTAAGTATATGAAAATA+TGG + chr1_3:55446019-55446038 None:intergenic 20.0%
!! ATATACTTAGACTAAAATGA+GGG - chr1_3:55446026-55446045 Msa0126360:intron 20.0%
! AATGAATGAATGAAATTTGG+GGG + chr1_3:55442169-55442188 None:intergenic 25.0%
! CAATGAATGAATGAAATTTG+GGG + chr1_3:55442170-55442189 None:intergenic 25.0%
! ATGTACAAAATTAGTTGGAT+TGG - chr1_3:55442339-55442358 Msa0126360:CDS 25.0%
! CAATAATTTCAGATAGAGAA+GGG - chr1_3:55442601-55442620 Msa0126360:intron 25.0%
!! TTGATTAAGTTTTTCTTGAC+AGG + chr1_3:55442724-55442743 None:intergenic 25.0%
! CTTAATCAAACCATTAAAAG+AGG - chr1_3:55442735-55442754 Msa0126360:intron 25.0%
! TATCAAGAATCATGATTCAA+AGG + chr1_3:55443107-55443126 None:intergenic 25.0%
! CTTTAAGCATTAAATAAGAC+AGG + chr1_3:55443162-55443181 None:intergenic 25.0%
!!! TAAAAGGTGCTAAATCATTT+GGG + chr1_3:55443393-55443412 None:intergenic 25.0%
!! TAAGTTCACTCTAAAAAAAC+TGG - chr1_3:55443487-55443506 Msa0126360:CDS 25.0%
! GCATAACAAAAATCAAAGTA+TGG + chr1_3:55443707-55443726 None:intergenic 25.0%
!! TTTTCAAACTATTTTATGCG+AGG - chr1_3:55443759-55443778 Msa0126360:five_prime_UTR 25.0%
!! ATATCTAAAACATCATGTTC+TGG + chr1_3:55444423-55444442 None:intergenic 25.0%
!!! AAAAAGGCTCTAAATTTTTC+TGG - chr1_3:55444503-55444522 Msa0126360:intron 25.0%
! AGTTTACCATAGTTTATGAT+GGG + chr1_3:55444538-55444557 None:intergenic 25.0%
! AAGTTTACCATAGTTTATGA+TGG + chr1_3:55444539-55444558 None:intergenic 25.0%
! TAGTAAAATTATACCCAGAA+GGG + chr1_3:55444876-55444895 None:intergenic 25.0%
!! TTCTGGGTATAATTTTACTA+CGG - chr1_3:55444876-55444895 Msa0126360:intron 25.0%
! TCTGAAAAGTTTGATTCATT+TGG - chr1_3:55444930-55444949 Msa0126360:intron 25.0%
! AAAAATGGAAATTAACGGAA+AGG - chr1_3:55445406-55445425 Msa0126360:intron 25.0%
! TTGTTCTTTCTATGTTTATG+AGG - chr1_3:55445633-55445652 Msa0126360:five_prime_UTR 25.0%
! TTTCTCAATAAACTTGACAT+TGG - chr1_3:55445677-55445696 Msa0126360:intron 25.0%
!! TGAAAATTAATGTCCCTTTT+TGG - chr1_3:55445726-55445745 Msa0126360:intron 25.0%
!! GAAAATTAATGTCCCTTTTT+GGG - chr1_3:55445727-55445746 Msa0126360:intron 25.0%
!! AAAATTAATGTCCCTTTTTG+GGG - chr1_3:55445728-55445747 Msa0126360:intron 25.0%
!!! TATATGCTTTTAAGATGCTA+GGG - chr1_3:55445984-55446003 Msa0126360:intron 25.0%
! CATATACTTAGACTAAAATG+AGG - chr1_3:55446025-55446044 Msa0126360:intron 25.0%
! ACAATAAAACTTTACACTGT+TGG + chr1_3:55446207-55446226 None:intergenic 25.0%
! TACATGTACACATATATTGA+TGG - chr1_3:55446286-55446305 Msa0126360:intron 25.0%
! AAATCTACAACATATTAAGC+CGG - chr1_3:55446607-55446626 Msa0126360:intron 25.0%
CTCAAATAATTAATACTCCG+AGG - chr1_3:55441922-55441941 Msa0126360:three_prime_UTR 30.0%
AAATCAAATGAGAGAGAGAA+GGG + chr1_3:55442004-55442023 None:intergenic 30.0%
ATTGATTGGGTTTGGAAAAT+TGG + chr1_3:55442037-55442056 None:intergenic 30.0%
AGCATCATCATTTCATATCA+CGG - chr1_3:55442082-55442101 Msa0126360:three_prime_UTR 30.0%
ATAGACTTCAAAATCCCATA+TGG - chr1_3:55442484-55442503 Msa0126360:CDS 30.0%
TAGACTTCAAAATCCCATAT+GGG - chr1_3:55442485-55442504 Msa0126360:CDS 30.0%
AATTCTACATTGTCCCATAT+GGG + chr1_3:55442501-55442520 None:intergenic 30.0%
TAATTCTACATTGTCCCATA+TGG + chr1_3:55442502-55442521 None:intergenic 30.0%
! CCTTCTCTATCTGAAATTAT+TGG + chr1_3:55442603-55442622 None:intergenic 30.0%
CCAATAATTTCAGATAGAGA+AGG - chr1_3:55442600-55442619 Msa0126360:intron 30.0%
TCAAACCATTAAAAGAGGTT+TGG - chr1_3:55442740-55442759 Msa0126360:intron 30.0%
CAAAAGTCTTTCTCTCATTA+AGG + chr1_3:55442834-55442853 None:intergenic 30.0%
!!! AGACTTTTGTTTGTTGTTGA+AGG - chr1_3:55442845-55442864 Msa0126360:intron 30.0%
! GTGAAGCTAACTTTATTTAG+AGG - chr1_3:55442889-55442908 Msa0126360:intron 30.0%
CTTTAGTAGTGTTAGTTACA+TGG - chr1_3:55443056-55443075 Msa0126360:intron 30.0%
TTCAAAGGAGATGATTTCTA+TGG + chr1_3:55443092-55443111 None:intergenic 30.0%
CTTGCCTTTGGTTATATATA+CGG - chr1_3:55443131-55443150 Msa0126360:intron 30.0%
TTGCCTTTGGTTATATATAC+GGG - chr1_3:55443132-55443151 Msa0126360:intron 30.0%
CTTGCGAAGAAATCAAAAAA+AGG + chr1_3:55443191-55443210 None:intergenic 30.0%
!! CTAAAAGGTGCTAAATCATT+TGG + chr1_3:55443394-55443413 None:intergenic 30.0%
! TTTGCCAACAAATGTTTTTC+AGG - chr1_3:55443457-55443476 Msa0126360:CDS 30.0%
! TTGCCAACAAATGTTTTTCA+GGG - chr1_3:55443458-55443477 Msa0126360:CDS 30.0%
! TTCACTCTAAAAAAACTGGT+GGG - chr1_3:55443491-55443510 Msa0126360:CDS 30.0%
GCAAACAGATTTCCAAATTA+AGG + chr1_3:55443656-55443675 None:intergenic 30.0%
CTTCGTTAAAACACGATAAA+AGG + chr1_3:55443808-55443827 None:intergenic 30.0%
!!! CTTTTATCGTGTTTTAACGA+AGG - chr1_3:55443806-55443825 Msa0126360:intron 30.0%
!!! GTTGATAACATTTTCAGGAA+TGG + chr1_3:55443919-55443938 None:intergenic 30.0%
! TGTGAAGAAAAGAAGCATAA+AGG + chr1_3:55443959-55443978 None:intergenic 30.0%
CCAAGACTCTCAAATTATTT+GGG + chr1_3:55444156-55444175 None:intergenic 30.0%
CCAAATAATTTGAGAGTCTT+GGG - chr1_3:55444154-55444173 Msa0126360:intron 30.0%
!!! TTTTATTGGGGACTAGTTAT+TGG + chr1_3:55444224-55444243 None:intergenic 30.0%
! ATGTCAGTAGGCATTTTATT+GGG + chr1_3:55444237-55444256 None:intergenic 30.0%
! AATGTCAGTAGGCATTTTAT+TGG + chr1_3:55444238-55444257 None:intergenic 30.0%
AATAAGTTGCTAGAGGAATA+GGG + chr1_3:55444273-55444292 None:intergenic 30.0%
ATGTGCAACAGTTATCTATT+AGG + chr1_3:55444327-55444346 None:intergenic 30.0%
AGTAACTGCCTAATAATAGT+AGG - chr1_3:55444375-55444394 Msa0126360:intron 30.0%
! ATCATGTGTGAGTAACATTT+TGG - chr1_3:55444567-55444586 Msa0126360:intron 30.0%
!! GGTATAAGTTTTATCTGCAA+AGG + chr1_3:55444846-55444865 None:intergenic 30.0%
GTAGTAAAATTATACCCAGA+AGG + chr1_3:55444877-55444896 None:intergenic 30.0%
TACTAAAAACTGATGCTTTC+AGG - chr1_3:55444904-55444923 Msa0126360:intron 30.0%
TATCACCTAATATGAGAACA+AGG + chr1_3:55445132-55445151 None:intergenic 30.0%
ATTAGGATAAAATTCATCCC+TGG + chr1_3:55445351-55445370 None:intergenic 30.0%
! CCTATAGTTGACTTTGAATT+AGG + chr1_3:55445368-55445387 None:intergenic 30.0%
CCTAATTCAAAGTCAACTAT+AGG - chr1_3:55445365-55445384 Msa0126360:intron 30.0%
AGAGTTCCAAACTCAAAAAA+TGG - chr1_3:55445391-55445410 Msa0126360:intron 30.0%
CCTATAATATGCAGAAGTAA+CGG + chr1_3:55445480-55445499 None:intergenic 30.0%
CGTTACTTCTGCATATTATA+GGG - chr1_3:55445478-55445497 Msa0126360:intron 30.0%
GTTACTTCTGCATATTATAG+GGG - chr1_3:55445479-55445498 Msa0126360:intron 30.0%
TGTTTATGAGGTAAATGATC+AGG - chr1_3:55445645-55445664 Msa0126360:five_prime_UTR 30.0%
CATTAAACTTTCCCCAAAAA+GGG + chr1_3:55445742-55445761 None:intergenic 30.0%
TACAAAATAAAATCGCCTCA+AGG + chr1_3:55445827-55445846 None:intergenic 30.0%
!!! GTATATGCTTTTAAGATGCT+AGG - chr1_3:55445983-55446002 Msa0126360:intron 30.0%
AAACATGTACTCGCATATAT+TGG - chr1_3:55446351-55446370 Msa0126360:intron 30.0%
AACATGTACTCGCATATATT+GGG - chr1_3:55446352-55446371 Msa0126360:intron 30.0%
TGATCTTAATGTTTGCTCAA+AGG - chr1_3:55446847-55446866 Msa0126360:five_prime_UTR 30.0%
! ATGTTTGCTCAAAGGAATTT+TGG - chr1_3:55446855-55446874 Msa0126360:five_prime_UTR 30.0%
!!! GAATTTTGGAGTAGAAATTG+TGG - chr1_3:55446869-55446888 Msa0126360:five_prime_UTR 30.0%
TAAATCACATACTAGAACGG+TGG - chr1_3:55441973-55441992 Msa0126360:three_prime_UTR 35.0%
CAAATCAAATGAGAGAGAGA+AGG + chr1_3:55442005-55442024 None:intergenic 35.0%
GAGTAAACTGAAATTTGAGC+AGG + chr1_3:55442202-55442221 None:intergenic 35.0%
GTATGTACTAGCAACAAGTT+AGG + chr1_3:55442292-55442311 None:intergenic 35.0%
!!! ATTTTGAAGTCTATCCCTCA+AGG + chr1_3:55442478-55442497 None:intergenic 35.0%
! AGCATATAGAACCATTGGTT+AGG - chr1_3:55442553-55442572 Msa0126360:intron 35.0%
TAATCTACACTCCTAACCAA+TGG + chr1_3:55442567-55442586 None:intergenic 35.0%
! TAGGAGTGTAGATTAGATAG+AGG - chr1_3:55442572-55442591 Msa0126360:intron 35.0%
ACAGACACCATGTAAACTTA+CGG - chr1_3:55442652-55442671 Msa0126360:intron 35.0%
TAAGACACCGTAAGTTTACA+TGG + chr1_3:55442662-55442681 None:intergenic 35.0%
ACCATTAAAAGAGGTTTGGA+TGG - chr1_3:55442744-55442763 Msa0126360:intron 35.0%
! GTTAGCTTCACAGACTAAAA+AGG + chr1_3:55442880-55442899 None:intergenic 35.0%
TCCCAGATATAAAGCCATTT+GGG - chr1_3:55442975-55442994 Msa0126360:intron 35.0%
!! ACCCAAATGGCTTTATATCT+GGG + chr1_3:55442979-55442998 None:intergenic 35.0%
TCTTGATATTGTCTTGCCTT+TGG - chr1_3:55443119-55443138 Msa0126360:intron 35.0%
AGACCCGTATATATAACCAA+AGG + chr1_3:55443138-55443157 None:intergenic 35.0%
TAAAGAGTTGAAGGGTAAGT+TGG - chr1_3:55443254-55443273 Msa0126360:intron 35.0%
TAGATATAAACTTCTGCAGG+AGG + chr1_3:55443346-55443365 None:intergenic 35.0%
GTCTAGATATAAACTTCTGC+AGG + chr1_3:55443349-55443368 None:intergenic 35.0%
TCTTGAGTCGAATCTCTAAA+AGG + chr1_3:55443409-55443428 None:intergenic 35.0%
!! TGCCAACAAATGTTTTTCAG+GGG - chr1_3:55443459-55443478 Msa0126360:CDS 35.0%
! GTTCACTCTAAAAAAACTGG+TGG - chr1_3:55443490-55443509 Msa0126360:CDS 35.0%
TAACACCTCAACGTATTACA+GGG + chr1_3:55444034-55444053 None:intergenic 35.0%
ATAACACCTCAACGTATTAC+AGG + chr1_3:55444035-55444054 None:intergenic 35.0%
!!! TCATTTTTTTCCCTGGCATA+CGG + chr1_3:55444058-55444077 None:intergenic 35.0%
AGTAGCCATATGATAGAAAC+TGG - chr1_3:55444088-55444107 Msa0126360:intron 35.0%
TGGTACCAGTTTCTATCATA+TGG + chr1_3:55444096-55444115 None:intergenic 35.0%
CCCAAATAATTTGAGAGTCT+TGG - chr1_3:55444153-55444172 Msa0126360:intron 35.0%
CCCAAGACTCTCAAATTATT+TGG + chr1_3:55444157-55444176 None:intergenic 35.0%
! TGTCAGTAGGCATTTTATTG+GGG + chr1_3:55444236-55444255 None:intergenic 35.0%
GAATAAGTTGCTAGAGGAAT+AGG + chr1_3:55444274-55444293 None:intergenic 35.0%
ACTAGAGAATAAGTTGCTAG+AGG + chr1_3:55444280-55444299 None:intergenic 35.0%
GTGTTAGGCCTACTATTATT+AGG + chr1_3:55444386-55444405 None:intergenic 35.0%
! TCTAAAACATCATGTTCTGG+AGG + chr1_3:55444420-55444439 None:intergenic 35.0%
TTCCCCTCACAGAATTAAAA+AGG - chr1_3:55444487-55444506 Msa0126360:intron 35.0%
!! AGCCTTTTTAATTCTGTGAG+GGG + chr1_3:55444492-55444511 None:intergenic 35.0%
!! GAGCCTTTTTAATTCTGTGA+GGG + chr1_3:55444493-55444512 None:intergenic 35.0%
!! AGAGCCTTTTTAATTCTGTG+AGG + chr1_3:55444494-55444513 None:intergenic 35.0%
CAATCACCCATCATAAACTA+TGG - chr1_3:55444529-55444548 Msa0126360:intron 35.0%
!! TGAGTAACATTTTGGCACTA+AGG - chr1_3:55444575-55444594 Msa0126360:intron 35.0%
!! GAGTAACATTTTGGCACTAA+GGG - chr1_3:55444576-55444595 Msa0126360:intron 35.0%
!! AGTAACATTTTGGCACTAAG+GGG - chr1_3:55444577-55444596 Msa0126360:intron 35.0%
!! ATATACCCTTATCCGCTTTT+TGG - chr1_3:55444635-55444654 Msa0126360:intron 35.0%
TTGCAAGATCTGTACTTTGA+TGG - chr1_3:55444663-55444682 Msa0126360:intron 35.0%
AAAATTATACCCAGAAGGGA+AGG + chr1_3:55444872-55444891 None:intergenic 35.0%
AGTTTGATTCATTTGGACAG+AGG - chr1_3:55444937-55444956 Msa0126360:intron 35.0%
TACCTTATGAAGCAACAGTT+GGG + chr1_3:55445002-55445021 None:intergenic 35.0%
CAAAAACTACAACAGAAAGC+TGG + chr1_3:55445093-55445112 None:intergenic 35.0%
CTGATCCTTGTTCTCATATT+AGG - chr1_3:55445124-55445143 Msa0126360:intron 35.0%
TCAACAATAAACAACCACCA+TGG + chr1_3:55445180-55445199 None:intergenic 35.0%
!! GTTGATTTGTTTCTACCCAT+CGG - chr1_3:55445195-55445214 Msa0126360:intron 35.0%
TAATGAAGAAGAGAAGACAG+AGG - chr1_3:55445256-55445275 Msa0126360:intron 35.0%
! TTAATTGGTGATTCAGCTGT+TGG - chr1_3:55445299-55445318 Msa0126360:intron 35.0%
! TAATTGGTGATTCAGCTGTT+GGG - chr1_3:55445300-55445319 Msa0126360:intron 35.0%
CCGTTACTTCTGCATATTAT+AGG - chr1_3:55445477-55445496 Msa0126360:intron 35.0%
CCATTAAACTTTCCCCAAAA+AGG + chr1_3:55445743-55445762 None:intergenic 35.0%
!! CCTTTTTGGGGAAAGTTTAA+TGG - chr1_3:55445740-55445759 Msa0126360:intron 35.0%
!! ATGGCCTTATAGTACTTGTA+TGG - chr1_3:55445759-55445778 Msa0126360:intron 35.0%
AGGACCATACAAGTACTATA+AGG + chr1_3:55445766-55445785 None:intergenic 35.0%
TGAAGAGAGTGATACTTCAA+AGG - chr1_3:55446144-55446163 Msa0126360:intron 35.0%
AGTGATACTTCAAAGGCTAA+TGG - chr1_3:55446151-55446170 Msa0126360:intron 35.0%
! GGCTAATGGTGTACTATTTT+AGG - chr1_3:55446165-55446184 Msa0126360:intron 35.0%
ATGTCGAAGAATAACAAGAC+TGG + chr1_3:55446267-55446286 None:intergenic 35.0%
ACATGTACTCGCATATATTG+GGG - chr1_3:55446353-55446372 Msa0126360:intron 35.0%
AACGTTGTCACAATACTTGT+TGG - chr1_3:55446441-55446460 Msa0126360:intron 35.0%
ACGTTGTCACAATACTTGTT+GGG - chr1_3:55446442-55446461 Msa0126360:intron 35.0%
! AGTCTTTCCATTTTCAATCC+AGG + chr1_3:55446673-55446692 None:intergenic 35.0%
ACTGTTGTTCTACAACAAGA+AGG - chr1_3:55446690-55446709 Msa0126360:intron 35.0%
CTGTTGTTCTACAACAAGAA+GGG - chr1_3:55446691-55446710 Msa0126360:intron 35.0%
TGTTGTTCTACAACAAGAAG+GGG - chr1_3:55446692-55446711 Msa0126360:intron 35.0%
! AAAGGGTTGTTGTTCGAAAT+AGG - chr1_3:55446740-55446759 Msa0126360:intron 35.0%
ATCAATCCTGAATAACCTAG+CGG + chr1_3:55446831-55446850 None:intergenic 35.0%
GCACTTCAAGCACAATTAAA+AGG - chr1_3:55446894-55446913 Msa0126360:five_prime_UTR 35.0%
ACTGCAAAAAGTTAACAGAC+TGG - chr1_3:55446959-55446978 Msa0126360:five_prime_UTR 35.0%
AAGGAGGAAAGGGATTGATT+GGG + chr1_3:55442050-55442069 None:intergenic 40.0%
TATGCGATTGAAGGAGGAAA+GGG + chr1_3:55442060-55442079 None:intergenic 40.0%
ATATGCGATTGAAGGAGGAA+AGG + chr1_3:55442061-55442080 None:intergenic 40.0%
TGATGCTGATATGCGATTGA+AGG + chr1_3:55442069-55442088 None:intergenic 40.0%
AGCTTGACTTTGTAACCTTG+AGG - chr1_3:55442460-55442479 Msa0126360:CDS 40.0%
GCTTGACTTTGTAACCTTGA+GGG - chr1_3:55442461-55442480 Msa0126360:CDS 40.0%
GCTTGAGCATATAGAACCAT+TGG - chr1_3:55442548-55442567 Msa0126360:intron 40.0%
AAGTTTACATGGTGTCTGTG+TGG + chr1_3:55442651-55442670 None:intergenic 40.0%
! GCCATCCAAACCTCTTTTAA+TGG + chr1_3:55442748-55442767 None:intergenic 40.0%
GTCTTTCTCTCATTAAGGTC+AGG + chr1_3:55442829-55442848 None:intergenic 40.0%
TTCAGACATGAGATCCCTTT+GGG + chr1_3:55442946-55442965 None:intergenic 40.0%
!! AATGGCTTTATATCTGGGAC+AGG + chr1_3:55442974-55442993 None:intergenic 40.0%
GTCCCAGATATAAAGCCATT+TGG - chr1_3:55442974-55442993 Msa0126360:intron 40.0%
!! CACCCAAATGGCTTTATATC+TGG + chr1_3:55442980-55442999 None:intergenic 40.0%
TCACCCTGCATCATAAACTT+TGG - chr1_3:55443003-55443022 Msa0126360:intron 40.0%
GCACCAAAGTTTATGATGCA+GGG + chr1_3:55443009-55443028 None:intergenic 40.0%
AGCACCAAAGTTTATGATGC+AGG + chr1_3:55443010-55443029 None:intergenic 40.0%
! AAGGGTAAGTTGGAGTTCAA+AGG - chr1_3:55443264-55443283 Msa0126360:intron 40.0%
ACAAGGAGAGAAGTTGTTTG+AGG - chr1_3:55443299-55443318 Msa0126360:intron 40.0%
GTCCCCTGAAAAACATTTGT+TGG + chr1_3:55443464-55443483 None:intergenic 40.0%
TTCATTGACCCAACCATAAC+TGG - chr1_3:55443589-55443608 Msa0126360:CDS 40.0%
TCATTGACCCAACCATAACT+GGG - chr1_3:55443590-55443609 Msa0126360:CDS 40.0%
GGAAGTTCAATAACCTTCGT+TGG - chr1_3:55443862-55443881 Msa0126360:intron 40.0%
TCTTCACATATGCAACCTCA+AGG - chr1_3:55443971-55443990 Msa0126360:five_prime_UTR 40.0%
!!! AGTGCTGTCATTTTTTTCCC+TGG + chr1_3:55444065-55444084 None:intergenic 40.0%
! TAGTTATTGGTTGGGAGAAC+CGG + chr1_3:55444211-55444230 None:intergenic 40.0%
!! TTGGGGACTAGTTATTGGTT+GGG + chr1_3:55444219-55444238 None:intergenic 40.0%
!! ATTGGGGACTAGTTATTGGT+TGG + chr1_3:55444220-55444239 None:intergenic 40.0%
ATCTGAAGGACAATGTCAGT+AGG + chr1_3:55444249-55444268 None:intergenic 40.0%
TAGAGGAATAGGGAATCTGA+AGG + chr1_3:55444263-55444282 None:intergenic 40.0%
TAGGAAGCAGTTACGTTTCT+TGG + chr1_3:55444308-55444327 None:intergenic 40.0%
CATGACCAAAAAGCGGATAA+GGG + chr1_3:55444643-55444662 None:intergenic 40.0%
ACATGACCAAAAAGCGGATA+AGG + chr1_3:55444644-55444663 None:intergenic 40.0%
CTTGCAACATGACCAAAAAG+CGG + chr1_3:55444650-55444669 None:intergenic 40.0%
CTACCTTATGAAGCAACAGT+TGG + chr1_3:55445003-55445022 None:intergenic 40.0%
AAACTACAACAGAAAGCTGG+AGG + chr1_3:55445090-55445109 None:intergenic 40.0%
ATTGAGAAAGCCAGAATCCA+TGG - chr1_3:55445160-55445179 Msa0126360:intron 40.0%
TAAACAACCACCATGGATTC+TGG + chr1_3:55445173-55445192 None:intergenic 40.0%
ATTTACTCGCAAGATTTGCC+AGG - chr1_3:55445330-55445349 Msa0126360:intron 40.0%
TTTACTCGCAAGATTTGCCA+GGG - chr1_3:55445331-55445350 Msa0126360:intron 40.0%
AGGAAGTTAAAGCGCAGATA+TGG - chr1_3:55445426-55445445 Msa0126360:intron 40.0%
GGAAGTTAAAGCGCAGATAT+GGG - chr1_3:55445427-55445446 Msa0126360:intron 40.0%
TTCTGGTATATGACATCAGC+AGG - chr1_3:55445516-55445535 Msa0126360:intron 40.0%
! CGTCAAACGTTTGATAGCAT+TGG - chr1_3:55445539-55445558 Msa0126360:intron 40.0%
CCTCAAGGAAAAGAATGAAG+AGG + chr1_3:55445812-55445831 None:intergenic 40.0%
! CCTCTTCATTCTTTTCCTTG+AGG - chr1_3:55445809-55445828 Msa0126360:intron 40.0%
TGGGAACAAGTCAGATCTTA+AGG - chr1_3:55446461-55446480 Msa0126360:intron 40.0%
! GGCACAAGGTTTGTTCTTTA+TGG - chr1_3:55446527-55446546 Msa0126360:intron 40.0%
CTACAACATATTAAGCCGGA+AGG - chr1_3:55446611-55446630 Msa0126360:intron 40.0%
CTTGAGACATCATAACCTTC+CGG + chr1_3:55446629-55446648 None:intergenic 40.0%
TCAAGAAAGATGATGCTTCC+TGG - chr1_3:55446652-55446671 Msa0126360:intron 40.0%
GATGCTTCCTGGATTGAAAA+TGG - chr1_3:55446663-55446682 Msa0126360:intron 40.0%
! AATAACCTAGCGGCATTTTC+AGG + chr1_3:55446821-55446840 None:intergenic 40.0%
AAAATGCCGCTAGGTTATTC+AGG - chr1_3:55446822-55446841 Msa0126360:intron 40.0%
GGAAAGGGATTGATTGGGTT+TGG + chr1_3:55442045-55442064 None:intergenic 45.0%
GAAGGAGGAAAGGGATTGAT+TGG + chr1_3:55442051-55442070 None:intergenic 45.0%
TGCTGATATGCGATTGAAGG+AGG + chr1_3:55442066-55442085 None:intergenic 45.0%
CGACATCATCACATTCGTTC+TGG - chr1_3:55442397-55442416 Msa0126360:CDS 45.0%
TTAAGGTCAGGTCAGCTACA+TGG + chr1_3:55442817-55442836 None:intergenic 45.0%
CTTCAGACATGAGATCCCTT+TGG + chr1_3:55442947-55442966 None:intergenic 45.0%
AGTTGGAGTTCAAAGGACTG+AGG - chr1_3:55443271-55443290 Msa0126360:intron 45.0%
GTTGGAGTTCAAAGGACTGA+GGG - chr1_3:55443272-55443291 Msa0126360:intron 45.0%
TTGGAGTTCAAAGGACTGAG+GGG - chr1_3:55443273-55443292 Msa0126360:intron 45.0%
AAAGGACTGAGGGGAAAACA+AGG - chr1_3:55443282-55443301 Msa0126360:intron 45.0%
! TGTGGGAAGTGACTTTTTGC+AGG - chr1_3:55443614-55443633 Msa0126360:CDS 45.0%
AACCTTCGTTGGAAGACTTC+TGG - chr1_3:55443873-55443892 Msa0126360:intron 45.0%
ATCCAGAAGTCTTCCAACGA+AGG + chr1_3:55443878-55443897 None:intergenic 45.0%
TCACATATGCAACCTCAAGG+TGG - chr1_3:55443974-55443993 Msa0126360:five_prime_UTR 45.0%
TATGCAACCTCAAGGTGGAA+AGG - chr1_3:55443979-55443998 Msa0126360:five_prime_UTR 45.0%
TCCATCCAAGAATGAGAGCT+TGG - chr1_3:55444181-55444200 Msa0126360:intron 45.0%
ACCAAGCTCTCATTCTTGGA+TGG + chr1_3:55444185-55444204 None:intergenic 45.0%
GAGAACCAAGCTCTCATTCT+TGG + chr1_3:55444189-55444208 None:intergenic 45.0%
! AGAATGAGAGCTTGGTTCTC+CGG - chr1_3:55444189-55444208 Msa0126360:intron 45.0%
!! ACATCATGTTCTGGAGGAGA+GGG + chr1_3:55444414-55444433 None:intergenic 45.0%
!! AACATCATGTTCTGGAGGAG+AGG + chr1_3:55444415-55444434 None:intergenic 45.0%
TTATACCCAGAAGGGAAGGA+GGG + chr1_3:55444868-55444887 None:intergenic 45.0%
ATTATACCCAGAAGGGAAGG+AGG + chr1_3:55444869-55444888 None:intergenic 45.0%
GATTCATTTGGACAGAGGTC+TGG - chr1_3:55444942-55444961 Msa0126360:intron 45.0%
! CACCCAACTGTTGCTTCATA+AGG - chr1_3:55444997-55445016 Msa0126360:intron 45.0%
!! AGAGTTGCTGACTTTCCGAT+GGG + chr1_3:55445213-55445232 None:intergenic 45.0%
!! AAGAGTTGCTGACTTTCCGA+TGG + chr1_3:55445214-55445233 None:intergenic 45.0%
ATCGGAAAGTCAGCAACTCT+TGG - chr1_3:55445213-55445232 Msa0126360:intron 45.0%
TCGGAAAGTCAGCAACTCTT+GGG - chr1_3:55445214-55445233 Msa0126360:intron 45.0%
! GCATATTATAGGGGTGCAGT+TGG - chr1_3:55445488-55445507 Msa0126360:intron 45.0%
!! CGTTTGATAGCATTGGTCGA+TGG - chr1_3:55445546-55445565 Msa0126360:intron 45.0%
AGTCAGATCTTAAGGATGCG+AGG - chr1_3:55446469-55446488 Msa0126360:intron 45.0%
GTCAGATCTTAAGGATGCGA+GGG - chr1_3:55446470-55446489 Msa0126360:intron 45.0%
AGCAGAAGGGGAGACAAAAA+AGG - chr1_3:55446722-55446741 Msa0126360:intron 45.0%
GCAGAAGGGGAGACAAAAAA+GGG - chr1_3:55446723-55446742 Msa0126360:intron 45.0%
!!! ATTAATATTAATTTGTATTT+TGG + chr1_3:55444116-55444135 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTAAGA+AGG - chr1_3:55446067-55446086 Msa0126360:intron 5.0%
!!! TTTTTTTTTTTTTTTAAGAA+GGG - chr1_3:55446068-55446087 Msa0126360:intron 5.0%
! CTTTTCTTTGCGTTGCGCCT+CGG + chr1_3:55441942-55441961 None:intergenic 50.0%
GAGTTGACACCACATGGACA+CGG + chr1_3:55442431-55442450 None:intergenic 50.0%
! TCCATGTGGTGTCAACTCAC+TGG - chr1_3:55442433-55442452 Msa0126360:CDS 50.0%
! ACCAGTGAGTTGACACCACA+TGG + chr1_3:55442437-55442456 None:intergenic 50.0%
TTTGGGCTTGAAACCGGACA+AGG + chr1_3:55442929-55442948 None:intergenic 50.0%
TTGTCCGGTTTCAAGCCCAA+AGG - chr1_3:55442928-55442947 Msa0126360:intron 50.0%
TGTCCGGTTTCAAGCCCAAA+GGG - chr1_3:55442929-55442948 Msa0126360:intron 50.0%
GATCCCTTTGGGCTTGAAAC+CGG + chr1_3:55442935-55442954 None:intergenic 50.0%
GCAGGGTGAAATCACCCAAA+TGG + chr1_3:55442992-55443011 None:intergenic 50.0%
AGCTGCAAGCTTGAAGCAGA+GGG + chr1_3:55443570-55443589 None:intergenic 50.0%
AAGCTGCAAGCTTGAAGCAG+AGG + chr1_3:55443571-55443590 None:intergenic 50.0%
TTGTGTGCCTTTCCACCTTG+AGG + chr1_3:55443989-55444008 None:intergenic 50.0%
! TCAAGGTGGAAAGGCACACA+AGG - chr1_3:55443988-55444007 Msa0126360:intron 50.0%
! AAAGGCACACAAGGAACCCA+TGG - chr1_3:55443997-55444016 Msa0126360:intron 50.0%
AAGGCACACAAGGAACCCAT+GGG - chr1_3:55443998-55444017 Msa0126360:intron 50.0%
AGCCACCCTGTAATACGTTG+AGG - chr1_3:55444026-55444045 Msa0126360:intron 50.0%
CACCTCAACGTATTACAGGG+TGG + chr1_3:55444031-55444050 None:intergenic 50.0%
! TGAGGTGTTATCCGTATGCC+AGG - chr1_3:55444044-55444063 Msa0126360:intron 50.0%
! GAGGTGTTATCCGTATGCCA+GGG - chr1_3:55444045-55444064 Msa0126360:intron 50.0%
GAGGAGAGGGATATGGTGTT+AGG + chr1_3:55444401-55444420 None:intergenic 50.0%
!! TGTTCTGGAGGAGAGGGATA+TGG + chr1_3:55444408-55444427 None:intergenic 50.0%
TTATACCCCTCCTTCCCTTC+TGG - chr1_3:55444859-55444878 Msa0126360:intron 50.0%
TATACCCCTCCTTCCCTTCT+GGG - chr1_3:55444860-55444879 Msa0126360:intron 50.0%
TATACCCAGAAGGGAAGGAG+GGG + chr1_3:55444867-55444886 None:intergenic 50.0%
GAGAAAGCCAGAATCCATGG+TGG - chr1_3:55445163-55445182 Msa0126360:intron 50.0%
! CAACTCTTGGGACTAGCAGA+TGG - chr1_3:55445226-55445245 Msa0126360:intron 50.0%
AGATCTTAAGGATGCGAGGG+AGG - chr1_3:55446473-55446492 Msa0126360:intron 50.0%
AAGGGGATCGATCAGCAGAA+GGG - chr1_3:55446709-55446728 Msa0126360:intron 50.0%
!!! CCTAGCGGCATTTTCAGGTT+TGG + chr1_3:55446816-55446835 None:intergenic 50.0%
CCAAACCTGAAAATGCCGCT+AGG - chr1_3:55446813-55446832 Msa0126360:intron 50.0%
GACCAATGTCCGTGTCCATG+TGG - chr1_3:55442419-55442438 Msa0126360:CDS 55.0%
CACCACATGGACACGGACAT+TGG + chr1_3:55442424-55442443 None:intergenic 55.0%
CCAGAAACCTCTGCCTTGTC+CGG - chr1_3:55442913-55442932 Msa0126360:intron 55.0%
CTTGAAACCGGACAAGGCAG+AGG + chr1_3:55442923-55442942 None:intergenic 55.0%
GCAAGCTTGAAGCAGAGGGA+GGG + chr1_3:55443566-55443585 None:intergenic 55.0%
TGCAAGCTTGAAGCAGAGGG+AGG + chr1_3:55443567-55443586 None:intergenic 55.0%
ACCCAACCATAACTGGGCTG+TGG - chr1_3:55443596-55443615 Msa0126360:CDS 55.0%
CCCACAGCCCAGTTATGGTT+GGG + chr1_3:55443600-55443619 None:intergenic 55.0%
CCCAACCATAACTGGGCTGT+GGG - chr1_3:55443597-55443616 Msa0126360:CDS 55.0%
TCCCACAGCCCAGTTATGGT+TGG + chr1_3:55443601-55443620 None:intergenic 55.0%
CACTTCCCACAGCCCAGTTA+TGG + chr1_3:55443605-55443624 None:intergenic 55.0%
GACAGAGGTCTGGATGCTGA+TGG - chr1_3:55444952-55444971 Msa0126360:intron 55.0%
AGAGGTCTGGATGCTGATGG+TGG - chr1_3:55444955-55444974 Msa0126360:intron 55.0%
CGCAGATATGGGACACAGCT+GGG - chr1_3:55445438-55445457 Msa0126360:intron 55.0%
! AAGGCGTTAGCTGAGGCACA+AGG - chr1_3:55446513-55446532 Msa0126360:intron 55.0%
GAAGGGGATCGATCAGCAGA+AGG - chr1_3:55446708-55446727 Msa0126360:intron 55.0%
AGGGGATCGATCAGCAGAAG+GGG - chr1_3:55446710-55446729 Msa0126360:intron 55.0%
CCGGACAAGGCAGAGGTTTC+TGG + chr1_3:55442916-55442935 None:intergenic 60.0%
CAGGGTGGCTTAGCACCCAT+GGG + chr1_3:55444016-55444035 None:intergenic 60.0%
ACAGGGTGGCTTAGCACCCA+TGG + chr1_3:55444017-55444036 None:intergenic 60.0%
GCGCAGATATGGGACACAGC+TGG - chr1_3:55445437-55445456 Msa0126360:intron 60.0%
! GGGTGCAGTTGGAGCACTTC+TGG - chr1_3:55445499-55445518 Msa0126360:intron 60.0%
!! TGCGAGGGAGGTACCTACGA+CGG - chr1_3:55446485-55446504 Msa0126360:intron 60.0%
!! AGGGAGGTACCTACGACGGA+AGG - chr1_3:55446489-55446508 Msa0126360:intron 60.0%
GGTACCTACGACGGAAGGCA+AGG - chr1_3:55446494-55446513 Msa0126360:intron 60.0%
AACGCCTTGCCTTCCGTCGT+AGG + chr1_3:55446501-55446520 None:intergenic 60.0%
! GGAAGGCAAGGCGTTAGCTG+AGG - chr1_3:55446506-55446525 Msa0126360:intron 60.0%
GGGACACAGCTGGGCAAGAG+AGG - chr1_3:55445447-55445466 Msa0126360:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 55441910 55447022 55441910 ID=Msa0126360;Name=Msa0126360
chr1_3 mRNA 55441910 55447022 55441910 ID=Msa0126360-mRNA-1;Parent=Msa0126360;Name=Msa0126360-mRNA-1;_AED=0.05;_eAED=0.05;_QI=465|1|1|1|0.25|0.2|5|261|224
chr1_3 exon 55441910 55442505 55441910 ID=Msa0126360-mRNA-1:exon:17253;Parent=Msa0126360-mRNA-1
chr1_3 exon 55443348 55443786 55443348 ID=Msa0126360-mRNA-1:exon:17252;Parent=Msa0126360-mRNA-1
chr1_3 exon 55443914 55444006 55443914 ID=Msa0126360-mRNA-1:exon:17251;Parent=Msa0126360-mRNA-1
chr1_3 exon 55445612 55445690 55445612 ID=Msa0126360-mRNA-1:exon:17250;Parent=Msa0126360-mRNA-1
chr1_3 exon 55446829 55447022 55446829 ID=Msa0126360-mRNA-1:exon:17249;Parent=Msa0126360-mRNA-1
chr1_3 five_prime_UTR 55446829 55447022 55446829 ID=Msa0126360-mRNA-1:five_prime_utr;Parent=Msa0126360-mRNA-1
chr1_3 five_prime_UTR 55445612 55445690 55445612 ID=Msa0126360-mRNA-1:five_prime_utr;Parent=Msa0126360-mRNA-1
chr1_3 five_prime_UTR 55443914 55444006 55443914 ID=Msa0126360-mRNA-1:five_prime_utr;Parent=Msa0126360-mRNA-1
chr1_3 five_prime_UTR 55443688 55443786 55443688 ID=Msa0126360-mRNA-1:five_prime_utr;Parent=Msa0126360-mRNA-1
chr1_3 CDS 55443348 55443687 55443348 ID=Msa0126360-mRNA-1:cds;Parent=Msa0126360-mRNA-1
chr1_3 CDS 55442171 55442505 55442171 ID=Msa0126360-mRNA-1:cds;Parent=Msa0126360-mRNA-1
chr1_3 three_prime_UTR 55441910 55442170 55441910 ID=Msa0126360-mRNA-1:three_prime_utr;Parent=Msa0126360-mRNA-1
Gene Sequence

>Msa0126360

ATGGCATTTAATAATGAAGAAGAGAAGACAGAGGATTACCTTTTCAAAATTGTCTTAATTGGTGATTCAGCTGTTGGGAAATCAAATTTACTCGCAAGATTTGCCAGGGATGAATTTTATCCTAATTCAAAGTCAACTATAGGAGTAGAGTTCCAAACTCAAAAAATGGAAATTAACGGAAAGGAAGTTAAAGCGCAGATATGGGACACAGCTGGGCAAGAGAGGTTCAGAGCCGTTACTTCTGCATATTATAGGGGTGCAGTTGGAGCACTTCTGGTATATGACATCAGCAGGCGTCAAACGTTTGATAGCATTGGTCGATGGCTTAACGAACTTCACACTCACTCTGATATGAACGTTGTCACAATACTTGTTGGGAACAAGTCAGATCTTAAGGATGCGAGGGAGGTACCTACGACGGAAGGCAAGGCGTTAGCTGAGGCACAAGGTTTGTTCTTTATGGAGACATCAGCACTTGATTCGTCAAATGTAGTTGCTGCTTTTCAAACAGTTGTAAAAGAAATCTACAACATATTAAGCCGGAAGGTTATGATGTCTCAAGAGCTCAAGAAAGATGATGCTTCCTGGATTGAAAATGGAAAGACTGTTGTTCTACAACAAGAAGGGGATCGATCAGCAGAAGGGGAGACAAAAAAGGGTTGTTGTTCGAAATAG
Protein sequence

>Msa0126360

MAFNNEEEKTEDYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKMEINGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALLVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDLKDAREVPTTEGKALAEAQGLFFMETSALDSSNVVAAFQTVVKEIYNILSRKVMMSQELKKDDASWIENGKTVVLQQEGDRSAEGETKKGCCSK*