AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1034290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1034290 MtrunA17_Chr7g0257131 91.232 422 27 1 244 665 28 439 0.0 783
Msa1034290 MtrunA17_Chr7g0257121 95.475 221 10 0 2 222 3 223 9.25e-159 456
Msa1034290 MtrunA17_Chr7g0257141 88.393 224 26 0 403 626 4 227 8.01e-129 379
Msa1034290 MtrunA17_Chr1g0159641 69.167 240 70 3 4 243 5 240 9.45e-112 337
Msa1034290 MtrunA17_Chr1g0159631 74.396 207 52 1 244 449 54 260 1.22e-94 310
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1034290 AT1G77320.1 45.135 483 224 8 2 458 3 470 2.23e-120 382
Msa1034290 AT1G77320.3 45.135 483 224 8 2 458 3 470 3.53e-120 382
Msa1034290 AT1G77320.2 45.455 473 220 9 2 458 3 453 2.64e-117 374

Find 124 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAAGTTAGGTCCTCTTTA+TGG 0.208714 7_1:+69729357 Msa1034290:CDS
TATATGGTTCTTCCTTTCTC+TGG 0.215900 7_1:+69726447 Msa1034290:CDS
CACAATCACGTACGTGTTTA+CGG 0.224750 7_1:-69723990 None:intergenic
TATTTGATAAAATTATTAAA+AGG 0.238753 7_1:-69729906 None:intergenic
TGAGGAGGATTGTAAGTCTA+AGG 0.252399 7_1:+69729428 Msa1034290:CDS
CTCTGTGCCCTCTTTGAATA+TGG 0.262226 7_1:-69729696 None:intergenic
CATAGTCAGGAAAAGGATAT+TGG 0.302597 7_1:+69728072 Msa1034290:CDS
ACCGATCATCTTGCAGCCTT+TGG 0.305539 7_1:-69724108 None:intergenic
TTGATTATGCTGCTTCTTGT+AGG 0.312007 7_1:+69729238 Msa1034290:CDS
ATTGTGCACCTCCTGTTCTT+CGG 0.321361 7_1:-69729733 None:intergenic
AAGAAAGCAATGGAGGAGTT+TGG 0.323395 7_1:+69729489 Msa1034290:CDS
TTGTGCACCTCCTGTTCTTC+GGG 0.333272 7_1:-69729732 None:intergenic
TGATGTCTGGCAGTGGGCTT+TGG 0.347637 7_1:+69726344 Msa1034290:intron
GATGAATTAATGATTGAAAT+GGG 0.348119 7_1:+69725259 Msa1034290:CDS
TTTCACTTGCTGCTTAACTA+TGG 0.352171 7_1:+69724883 Msa1034290:CDS
AGATGAATTAATGATTGAAA+TGG 0.354164 7_1:+69725258 Msa1034290:CDS
ATTAAAGTTCAATTCATTGC+TGG 0.358393 7_1:-69728265 None:intergenic
AATGGAGAAGCTAAGTAATA+TGG 0.365938 7_1:+69728377 Msa1034290:CDS
AATAAAGATCCACTCTGAAC+AGG 0.382879 7_1:-69728015 None:intergenic
TGTTCCTCAAGAGTCATATA+TGG 0.385478 7_1:+69726431 Msa1034290:CDS
AAGTAACTACTGGTTTCTTC+AGG 0.396829 7_1:-69726371 None:intergenic
ATATGGTTCTTCCTTTCTCT+GGG 0.421830 7_1:+69726448 Msa1034290:CDS
GATTGCAGAATATCACTTGT+TGG 0.423098 7_1:+69728339 Msa1034290:CDS
AATTCATTGCTGGTCTGTAA+TGG 0.425432 7_1:-69728255 None:intergenic
ATAGTCAGGAAAAGGATATT+GGG 0.425831 7_1:+69728073 Msa1034290:CDS
GCGCGTTTGCTTCGAGATTG+AGG 0.429821 7_1:+69729272 Msa1034290:CDS
GTCATCAGATTCAGAATCAT+TGG 0.438425 7_1:-69728298 None:intergenic
AACCATTCATAAGTAACTAC+TGG 0.442581 7_1:-69726381 None:intergenic
AACCAGTAGTTACTTATGAA+TGG 0.446544 7_1:+69726379 Msa1034290:CDS
GAATAGACTCACATTTCTGT+TGG 0.448184 7_1:-69728468 None:intergenic
CTCAACAGCGCAGCATAGTC+AGG 0.448400 7_1:+69728059 Msa1034290:CDS
ATTACGCTGTTAAAACCTCT+TGG 0.454206 7_1:+69728743 Msa1034290:CDS
TAATGATCAGCCCGAAGAAC+AGG 0.456778 7_1:+69729722 Msa1034290:CDS
CATGTAATTTACAACCTGCT+TGG 0.457894 7_1:-69726494 None:intergenic
AAAGAAGAATCTAGAAATGA+AGG 0.461492 7_1:+69729176 Msa1034290:CDS
TATCATTTAAATACAAGCAT+TGG 0.466348 7_1:-69728419 None:intergenic
GATGACTTGAGGGCAAAGTT+AGG 0.468171 7_1:+69729345 Msa1034290:CDS
ATGTACCAGACCTTGTACTC+TGG 0.469850 7_1:-69725346 None:intergenic
CTTGAATGATCCGGTTAGAA+AGG 0.471395 7_1:+69729554 Msa1034290:CDS
TGAGGCTTATAAGCTTTATG+AGG 0.472144 7_1:+69729410 Msa1034290:CDS
AGTTGGTGGAGGCATCCAAT+AGG 0.485896 7_1:+69729148 Msa1034290:CDS
AAGAACAGGAGGTGCACAAT+GGG 0.490004 7_1:+69729736 Msa1034290:CDS
AGAACAGTGTCAAATTCATC+AGG 0.495009 7_1:-69723880 None:intergenic
GATATTGGGAAAATGCAATC+TGG 0.498766 7_1:+69728087 Msa1034290:CDS
ATTTGAATCTGCGGCTCTTG+AGG 0.500270 7_1:-69728115 None:intergenic
AAACATTGAGAGCCACTTCA+AGG 0.500931 7_1:+69729578 Msa1034290:CDS
CACTTGCTGCTTAACTATGG+AGG 0.504060 7_1:+69724886 Msa1034290:CDS
TGTTACGTACTTGAATGATC+CGG 0.504932 7_1:+69729545 Msa1034290:CDS
TTCAACTGTTCCATGAAAAG+AGG 0.506071 7_1:+69729963 Msa1034290:three_prime_UTR
AGTAATATGGTGCGTAAAGG+TGG 0.506996 7_1:+69728390 Msa1034290:CDS
AACTAGTATATTTGAATCTG+CGG 0.510360 7_1:-69728124 None:intergenic
TCACTGATTGTAAGTACAGA+AGG 0.511963 7_1:-69727545 None:intergenic
GGAATTAAAGAGACGACAAA+AGG 0.513312 7_1:+69729293 Msa1034290:CDS
ATCTCTAAGCATCATGAGAT+GGG 0.513813 7_1:+69729462 Msa1034290:CDS
AGGATCAACATTTAAAGACT+TGG 0.515103 7_1:-69728154 None:intergenic
CTGAATCTGATGACGATGAC+AGG 0.515831 7_1:+69728307 Msa1034290:CDS
GGGTTAAAGATCTGTGTGAC+TGG 0.518889 7_1:+69726468 Msa1034290:CDS
TTTAGATAAGCGCAAAGAGA+TGG 0.519107 7_1:+69726576 Msa1034290:intron
GGCTTATAAGCTTTATGAGG+AGG 0.520574 7_1:+69729413 Msa1034290:CDS
AAGAATCGATGATGACTTGA+GGG 0.520648 7_1:+69729335 Msa1034290:CDS
CACTGTACCGTCGTAGAACA+TGG 0.521282 7_1:-69728798 None:intergenic
TGTTAAAACCTCTTGGCTTG+AGG 0.521313 7_1:+69728750 Msa1034290:CDS
TGAATTAATGATTGAAATGG+GGG 0.522521 7_1:+69725261 Msa1034290:CDS
AGCGCAGCATAGTCAGGAAA+AGG 0.526174 7_1:+69728065 Msa1034290:CDS
CAAGTGAAAGCTGCTTGTCT+AGG 0.528789 7_1:-69724869 None:intergenic
CAGATCTTTAACCCAGAGAA+AGG 0.530794 7_1:-69726459 None:intergenic
CATCTCTAAGCATCATGAGA+TGG 0.536901 7_1:+69729461 Msa1034290:CDS
TATTGTCACGTAAGGTGACT+AGG 0.538277 7_1:+69728034 Msa1034290:CDS
TGTTTGGGCTCCAGAGTACA+AGG 0.539577 7_1:+69725336 Msa1034290:CDS
TGGATCTTTATTGTCACGTA+AGG 0.539831 7_1:+69728026 Msa1034290:CDS
GCTGTCAAAATACTCGCCTA+TGG 0.540124 7_1:+69724908 Msa1034290:CDS
AGTTGACGCACATAGTAGTC+GGG 0.543297 7_1:+69728442 Msa1034290:CDS
CTAAGTAATATGGTGCGTAA+AGG 0.550132 7_1:+69728387 Msa1034290:CDS
GGGATTTAAGAAAGCAATGG+AGG 0.551560 7_1:+69729482 Msa1034290:CDS
ATGAATTAATGATTGAAATG+GGG 0.551763 7_1:+69725260 Msa1034290:CDS
CACTGATTGTAAGTACAGAA+GGG 0.560350 7_1:-69727544 None:intergenic
AACATTGAGAGCCACTTCAA+GGG 0.562116 7_1:+69729579 Msa1034290:CDS
TCAAAATCTTCCCCTTGAAG+TGG 0.564250 7_1:-69729590 None:intergenic
GTATTGAGAACTGTTGCTCT+AGG 0.565174 7_1:+69728715 Msa1034290:CDS
TCCAAAGGCTGCAAGATGAT+CGG 0.567515 7_1:+69724107 Msa1034290:CDS
TTGACCGCCGTTCTCTTCGA+CGG 0.568738 7_1:-69723908 None:intergenic
TGTCGTCGAAGTTATTCGAC+GGG 0.570066 7_1:+69723824 Msa1034290:CDS
TGTGCCCTCTTTGAATATGG+AGG 0.571879 7_1:-69729693 None:intergenic
TGAATTTGACACTGTTCTCA+AGG 0.572061 7_1:+69723885 Msa1034290:CDS
AAGTTGACGCACATAGTAGT+CGG 0.576552 7_1:+69728441 Msa1034290:CDS
CTGATCTGCATCAAAGCCAT+AGG 0.576868 7_1:-69724924 None:intergenic
CTCAAGGCCGTCGAAGAGAA+CGG 0.577576 7_1:+69723901 Msa1034290:CDS
TGGCTTTGATGCAGATCAGA+TGG 0.580508 7_1:+69724928 Msa1034290:CDS
GAGGAGGATTGTAAGTCTAA+GGG 0.581483 7_1:+69729429 Msa1034290:CDS
AATATGGTGCGTAAAGGTGG+AGG 0.581922 7_1:+69728393 Msa1034290:CDS
AAATCGAAATTGAACTCTCA+CGG 0.588675 7_1:-69729783 None:intergenic
ACGACAAAAGGAGATGGAGA+TGG 0.591211 7_1:+69729305 Msa1034290:CDS
AAAGAGACGACAAAAGGAGA+TGG 0.591489 7_1:+69729299 Msa1034290:CDS
GATGGGATTTAAGAAAGCAA+TGG 0.597083 7_1:+69729479 Msa1034290:CDS
AAAGCTGCTTGTCTAGGCAG+AGG 0.598205 7_1:-69724863 None:intergenic
AAACTTATTCTACAAAATGG+TGG 0.599072 7_1:+69726601 Msa1034290:CDS
TAAGAATCGATGATGACTTG+AGG 0.600122 7_1:+69729334 Msa1034290:CDS
TGTTGACTTAGCACAAGTGC+TGG 0.601901 7_1:+69729215 Msa1034290:CDS
ATAAAGATCCACTCTGAACA+GGG 0.605959 7_1:-69728014 None:intergenic
TGTGTGACTGGAATCCAAGC+AGG 0.611137 7_1:+69726480 Msa1034290:CDS
ACAGTGTCAAATTCATCAGG+TGG 0.617388 7_1:-69723877 None:intergenic
AGAACCATATATGACTCTTG+AGG 0.617430 7_1:-69726435 None:intergenic
TTTGAAGATCTAAAATCCAA+AGG 0.618984 7_1:+69724092 Msa1034290:CDS
ATGTCGTCGAAGTTATTCGA+CGG 0.622361 7_1:+69723823 Msa1034290:CDS
ACATTGAGAGCCACTTCAAG+GGG 0.623903 7_1:+69729580 Msa1034290:CDS
CATCTCATGATGCTTAGAGA+TGG 0.626228 7_1:-69729460 None:intergenic
ATAAGCCTCCATATTCAAAG+AGG 0.630021 7_1:+69729688 Msa1034290:CDS
AGATCCACTCTGAACAGGGT+AGG 0.631294 7_1:-69728010 None:intergenic
TGTGATAAGATTGATCCTGA+TGG 0.635838 7_1:+69729621 Msa1034290:CDS
GAAGAACAGGAGGTGCACAA+TGG 0.637862 7_1:+69729735 Msa1034290:CDS
GTTCTTCAATGTGCTAAACA+AGG 0.644275 7_1:+69724836 Msa1034290:CDS
TGATCAGCCCGAAGAACAGG+AGG 0.646039 7_1:+69729725 Msa1034290:CDS
ACAGAAGGGATACTAATGCA+AGG 0.652607 7_1:-69727530 None:intergenic
ATTGAACTTTAATCGAGCTG+TGG 0.657516 7_1:+69728275 Msa1034290:CDS
ACAGAGTTTAAATCTGATGA+CGG 0.658421 7_1:-69725301 None:intergenic
GAGTCCTACCCTGTTCAGAG+TGG 0.662340 7_1:+69728006 Msa1034290:CDS
TCATTGCTGGTCTGTAATGG+AGG 0.662412 7_1:-69728252 None:intergenic
AACAAGTCCATGTTCTACGA+CGG 0.663053 7_1:+69728791 Msa1034290:CDS
TAAGCCTCCATATTCAAAGA+GGG 0.664645 7_1:+69729689 Msa1034290:CDS
ATCACAATCCTCAAGCCAAG+AGG 0.666970 7_1:-69728758 None:intergenic
AACGGCGGTCAAGTTCACAT+CGG 0.709798 7_1:+69723919 Msa1034290:CDS
GAATTAATGATTGAAATGGG+GGG 0.725048 7_1:+69725262 Msa1034290:CDS
AAGGCCGTCGAAGAGAACGG+CGG 0.748190 7_1:+69723904 Msa1034290:CDS
TATTCAAAGAGGGCACAGAG+TGG 0.749556 7_1:+69729699 Msa1034290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAACAAAAAAAATGA+AGG - chr7_1:69726038-69726057 None:intergenic 10.0%
!!! ATAAAATTTGTTAATATAAG+CGG - chr7_1:69726875-69726894 None:intergenic 10.0%
!!! TTTTATATATTTGTTTTGTA+AGG + chr7_1:69727458-69727477 Msa1034290:intron 10.0%
!!! TTATTTTTCGTATTTTTATA+TGG + chr7_1:69727965-69727984 Msa1034290:intron 10.0%
!! GATATTAAGAATAAATTTAA+TGG + chr7_1:69728492-69728511 Msa1034290:intron 10.0%
!! CATTAAAAAAAATCAGATAA+TGG - chr7_1:69724046-69724065 None:intergenic 15.0%
!!! CTATTTTCTCAAATTATTAA+TGG - chr7_1:69724260-69724279 None:intergenic 15.0%
!! CATATATTAAAATATAGACT+TGG + chr7_1:69725087-69725106 Msa1034290:intron 15.0%
!!! TTTTTATATTATTCTTAGCT+AGG + chr7_1:69725386-69725405 Msa1034290:intron 15.0%
!!! ATATTATATTGCTTCTTTTT+CGG - chr7_1:69725957-69725976 None:intergenic 15.0%
!!! TATTTTGAGTTTAAATAGTT+AGG + chr7_1:69726898-69726917 Msa1034290:intron 15.0%
!! TAAATCATAAATATAGGAAA+AGG - chr7_1:69728655-69728674 None:intergenic 15.0%
!! AGAAGATAAATCATAAATAT+AGG - chr7_1:69728661-69728680 None:intergenic 15.0%
!!! TTTTCTAAGTTCTTAAATTT+AGG + chr7_1:69728954-69728973 Msa1034290:intron 15.0%
!! AAAAAAAGAGATGTCAAATT+GGG + chr7_1:69724540-69724559 Msa1034290:intron 20.0%
!!! TTCATTTTTGCAATTAGATA+AGG + chr7_1:69724642-69724661 Msa1034290:intron 20.0%
!! ATTGAGAACAAAAATATGAA+GGG - chr7_1:69725202-69725221 None:intergenic 20.0%
!! AATTGAGAACAAAAATATGA+AGG - chr7_1:69725203-69725222 None:intergenic 20.0%
!!! TTCATATTTTTGTTCTCAAT+TGG + chr7_1:69725202-69725221 Msa1034290:intron 20.0%
!! AGATGAATTAATGATTGAAA+TGG + chr7_1:69725258-69725277 Msa1034290:CDS 20.0%
!! GATGAATTAATGATTGAAAT+GGG + chr7_1:69725259-69725278 Msa1034290:CDS 20.0%
!! ATGAATTAATGATTGAAATG+GGG + chr7_1:69725260-69725279 Msa1034290:CDS 20.0%
!!! ATATACACTTTTTATTGTTC+AGG + chr7_1:69725409-69725428 Msa1034290:intron 20.0%
!! TAGGTAGTAGTATAAATATT+TGG + chr7_1:69725631-69725650 Msa1034290:intron 20.0%
!!! GGTAGTAGTATAAATATTTT+AGG + chr7_1:69725665-69725684 Msa1034290:intron 20.0%
!!! TGGTAATGTAAAATTAGTAA+AGG + chr7_1:69725853-69725872 Msa1034290:intron 20.0%
!!! CTCTAAAAAAAAAACATTGT+TGG + chr7_1:69725989-69726008 Msa1034290:intron 20.0%
!!! TTTGTTTTTTTTTTCCTTCT+TGG + chr7_1:69726046-69726065 Msa1034290:intron 20.0%
!! AATTACATGTCTATTAGTAT+TGG + chr7_1:69726508-69726527 Msa1034290:intron 20.0%
!! GAAAAACTTATTCTACAAAA+TGG + chr7_1:69726598-69726617 Msa1034290:CDS 20.0%
!!! ATTCATTTTTACAAGAATTC+AGG + chr7_1:69726928-69726947 Msa1034290:intron 20.0%
!! TTAAACTGGTAATAATAACT+AGG + chr7_1:69727195-69727214 Msa1034290:intron 20.0%
!! ATAATAACTAGGATTCATTT+AGG + chr7_1:69727206-69727225 Msa1034290:intron 20.0%
!!! AAGTTGAAATTTTGTTTAAC+AGG + chr7_1:69727402-69727421 Msa1034290:intron 20.0%
!!! AATTCAAAGATTTGTTATTG+AGG + chr7_1:69727638-69727657 Msa1034290:intron 20.0%
!! TCATTGTCACAATATTAATA+TGG - chr7_1:69727745-69727764 None:intergenic 20.0%
!! TTAATATTGTGACAATGAAA+TGG + chr7_1:69727747-69727766 Msa1034290:intron 20.0%
!! TTATCAAGAAAATAAGTGTA+AGG - chr7_1:69727901-69727920 None:intergenic 20.0%
!! TATCATTTAAATACAAGCAT+TGG - chr7_1:69728422-69728441 None:intergenic 20.0%
!! TAAATATAGGAAAAGGAATA+TGG - chr7_1:69728648-69728667 None:intergenic 20.0%
!!! TATGATATTCTTTTTCCAAA+AGG + chr7_1:69728823-69728842 Msa1034290:CDS 20.0%
!!! ATTCTTCTTTTTTATCCTAT+TGG - chr7_1:69729166-69729185 None:intergenic 20.0%
!! ATCTTCTTCTTTTCTTTTGT+GGG - chr7_1:69723805-69723824 None:intergenic 25.0%
!! TTTGAAGATCTAAAATCCAA+AGG + chr7_1:69724092-69724111 Msa1034290:CDS 25.0%
! TATGACAACAAAACTTCATA+TGG - chr7_1:69724461-69724480 None:intergenic 25.0%
!!! ATGAAGTTTTGTTGTCATAT+AGG + chr7_1:69724462-69724481 Msa1034290:intron 25.0%
! GAAAAAAAGAGATGTCAAAT+TGG + chr7_1:69724539-69724558 Msa1034290:intron 25.0%
! AAAAAAGAGATGTCAAATTG+GGG + chr7_1:69724541-69724560 Msa1034290:intron 25.0%
! TGATAAAAGAAACAAAACTG+AGG - chr7_1:69724797-69724816 None:intergenic 25.0%
!! TGTTTCTTTTATCATTGAGT+AGG + chr7_1:69724803-69724822 Msa1034290:intron 25.0%
! TAACAGATAACTTAAACCTT+GGG - chr7_1:69725149-69725168 None:intergenic 25.0%
! ATAACAGATAACTTAAACCT+TGG - chr7_1:69725150-69725169 None:intergenic 25.0%
!!! AGTTATCTGTTATTTTCACT+TGG + chr7_1:69725157-69725176 Msa1034290:intron 25.0%
! TGAATTAATGATTGAAATGG+GGG + chr7_1:69725261-69725280 Msa1034290:CDS 25.0%
! TGTCATTGTGAAAAATGTTT+GGG + chr7_1:69725321-69725340 Msa1034290:CDS 25.0%
! GTATCACATAAAAACACTTA+GGG + chr7_1:69725499-69725518 Msa1034290:intron 25.0%
! AAATATTTGGCTAGTAGTTT+AGG + chr7_1:69725644-69725663 Msa1034290:intron 25.0%
! GATTTATCTTGAACTAAAGA+TGG + chr7_1:69725779-69725798 Msa1034290:intron 25.0%
!!! TCACTGGTTGTATTATTTTA+TGG + chr7_1:69725833-69725852 Msa1034290:intron 25.0%
! AAACTTATTCTACAAAATGG+TGG + chr7_1:69726601-69726620 Msa1034290:CDS 25.0%
! CAACTGATAGAATTATCAAA+AGG - chr7_1:69726680-69726699 None:intergenic 25.0%
! TTATTAATAAGTGCGAACAA+GGG - chr7_1:69726793-69726812 None:intergenic 25.0%
! ATTATTAATAAGTGCGAACA+AGG - chr7_1:69726794-69726813 None:intergenic 25.0%
!!! AAATTTGTTAATATAAGCGG+AGG - chr7_1:69726872-69726891 None:intergenic 25.0%
! TTCTTATCTGTTAGAATGAA+TGG + chr7_1:69727006-69727025 Msa1034290:intron 25.0%
!!! TTCAATTTTAACAGATAGTG+TGG - chr7_1:69727087-69727106 None:intergenic 25.0%
! ATTCATTTAGGCAAAGAATT+CGG + chr7_1:69727218-69727237 Msa1034290:intron 25.0%
! GTAAGGAAATGAAAGAATAA+CGG - chr7_1:69727884-69727903 None:intergenic 25.0%
! AACTAGTATATTTGAATCTG+CGG - chr7_1:69728127-69728146 None:intergenic 25.0%
!!! TGTTCCATTTTTTGTTAAAG+AGG + chr7_1:69728215-69728234 Msa1034290:CDS 25.0%
! ATTAAAGTTCAATTCATTGC+TGG - chr7_1:69728268-69728287 None:intergenic 25.0%
! GCTTTCCTATGAATTTAATT+TGG + chr7_1:69728618-69728637 Msa1034290:intron 25.0%
! GTTTGCCAAATTAAATTCAT+AGG - chr7_1:69728626-69728645 None:intergenic 25.0%
!!! CTACTTTTTGGTTATCTATT+AGG + chr7_1:69728886-69728905 Msa1034290:intron 25.0%
!!! TAGGTAACATAGTCTTTTTT+AGG + chr7_1:69728973-69728992 Msa1034290:intron 25.0%
! CATTCAAACACTTAATAAAG+TGG - chr7_1:69729113-69729132 None:intergenic 25.0%
! CACTTTATTAAGTGTTTGAA+TGG + chr7_1:69729111-69729130 Msa1034290:intron 25.0%
! AAAGAAGAATCTAGAAATGA+AGG + chr7_1:69729176-69729195 Msa1034290:CDS 25.0%
!!! TCAATCTTCAACTCATTTTT+AGG - chr7_1:69729393-69729412 None:intergenic 25.0%
!! TAAAAATGAGTTGAAGATTG+AGG + chr7_1:69729392-69729411 Msa1034290:CDS 25.0%
! CATCTTCTTCTTTTCTTTTG+TGG - chr7_1:69723806-69723825 None:intergenic 30.0%
! TTTTTCTTCAATTTTCTCCC+TGG - chr7_1:69724525-69724544 None:intergenic 30.0%
! GATTTTCATAGTGAAAGTTG+AGG + chr7_1:69724760-69724779 Msa1034290:intron 30.0%
! TTAAACCTTGGGATTTTAGA+GGG - chr7_1:69725138-69725157 None:intergenic 30.0%
GAATTAATGATTGAAATGGG+GGG + chr7_1:69725262-69725281 Msa1034290:CDS 30.0%
ACAGAGTTTAAATCTGATGA+CGG - chr7_1:69725304-69725323 None:intergenic 30.0%
CTGTCATTGTGAAAAATGTT+TGG + chr7_1:69725320-69725339 Msa1034290:CDS 30.0%
! TTTTTATTGTTCAGGCTAGT+TGG + chr7_1:69725417-69725436 Msa1034290:intron 30.0%
!! TGTTTTTATGTGATACGTTG+GGG - chr7_1:69725495-69725514 None:intergenic 30.0%
!! GTGTTTTTATGTGATACGTT+GGG - chr7_1:69725496-69725515 None:intergenic 30.0%
!! AGTGTTTTTATGTGATACGT+TGG - chr7_1:69725497-69725516 None:intergenic 30.0%
CGTATCACATAAAAACACTT+AGG + chr7_1:69725498-69725517 Msa1034290:intron 30.0%
!! TCTAAAAAGCATCTAGTTCA+AGG + chr7_1:69725553-69725572 Msa1034290:intron 30.0%
!! CTAAAAAGCATCTAGTTCAA+GGG + chr7_1:69725554-69725573 Msa1034290:intron 30.0%
CATCATCTTTAACGTAATTG+CGG - chr7_1:69725747-69725766 None:intergenic 30.0%
! CTACAACAAACGTTTTTCAT+TGG + chr7_1:69726012-69726031 Msa1034290:intron 30.0%
!!! TGCTCATATGTTTTGTTTCT+TGG + chr7_1:69726119-69726138 Msa1034290:intron 30.0%
! TGGTCTTTCTCATTTAGTTT+CGG + chr7_1:69726139-69726158 Msa1034290:intron 30.0%
TACGAAGATGAACTTATTAG+TGG - chr7_1:69726198-69726217 None:intergenic 30.0%
ATTAAAATCTCCTCAGAGAT+TGG - chr7_1:69726285-69726304 None:intergenic 30.0%
AACCAGTAGTTACTTATGAA+TGG + chr7_1:69726379-69726398 Msa1034290:CDS 30.0%
AACCATTCATAAGTAACTAC+TGG - chr7_1:69726384-69726403 None:intergenic 30.0%
GAAAATGTTAATGCAGACAT+GGG - chr7_1:69726722-69726741 None:intergenic 30.0%
! GCATTAACATTTTCCTTATC+TGG + chr7_1:69726728-69726747 Msa1034290:intron 30.0%
ATTATCATTTGTGCCAGATA+AGG - chr7_1:69726744-69726763 None:intergenic 30.0%
ATGTATCAATACATCAAAGC+AGG - chr7_1:69726958-69726977 None:intergenic 30.0%
TTCATTTAGGCAAAGAATTC+GGG + chr7_1:69727219-69727238 Msa1034290:intron 30.0%
!!! CATCTTTTTTCTACATTAGC+TGG + chr7_1:69727372-69727391 Msa1034290:intron 30.0%
ACTTAATTATTCAGTCAGAG+AGG - chr7_1:69727613-69727632 None:intergenic 30.0%
ATAGTCAGGAAAAGGATATT+GGG + chr7_1:69728073-69728092 Msa1034290:CDS 30.0%
AGGATCAACATTTAAAGACT+TGG - chr7_1:69728157-69728176 None:intergenic 30.0%
TCTGCCTCTTTAACAAAAAA+TGG - chr7_1:69728222-69728241 None:intergenic 30.0%
AATGGAGAAGCTAAGTAATA+TGG + chr7_1:69728377-69728396 Msa1034290:CDS 30.0%
! GGATATTAGTTTCAGAAATG+TGG + chr7_1:69728596-69728615 Msa1034290:intron 30.0%
!! ATTTGTGTTTTTACAGGGAA+AGG + chr7_1:69728686-69728705 Msa1034290:intron 30.0%
!! TTTGTGTTTTTACAGGGAAA+GGG + chr7_1:69728687-69728706 Msa1034290:intron 30.0%
! AAACATGATAACACACCTTT+TGG - chr7_1:69728841-69728860 None:intergenic 30.0%
!!! CATAGTCTTTTTTAGGAGTT+TGG + chr7_1:69728980-69728999 Msa1034290:intron 30.0%
ATAAAGTGGCAGAAATCATA+AGG - chr7_1:69729099-69729118 None:intergenic 30.0%
ATTAAGTGTTTGAATGGTTC+AGG + chr7_1:69729117-69729136 Msa1034290:intron 30.0%
!! TCAACTCATTTTTAGGCTTT+TGG - chr7_1:69729386-69729405 None:intergenic 30.0%
! TCAATGTTTTCCTTTCTAAC+CGG - chr7_1:69729567-69729586 None:intergenic 30.0%
! TAAACAAATTTTGCACCATC+AGG - chr7_1:69729639-69729658 None:intergenic 30.0%
AAATCGAAATTGAACTCTCA+CGG - chr7_1:69729786-69729805 None:intergenic 30.0%
! CTTTTCTTTTGTGGGTTTGT+GGG - chr7_1:69723797-69723816 None:intergenic 35.0%
! TCTTTTCTTTTGTGGGTTTG+TGG - chr7_1:69723798-69723817 None:intergenic 35.0%
AGAACAGTGTCAAATTCATC+AGG - chr7_1:69723883-69723902 None:intergenic 35.0%
TGAATTTGACACTGTTCTCA+AGG + chr7_1:69723885-69723904 Msa1034290:CDS 35.0%
! ATAATCATTTTCACCGTTGC+GGG - chr7_1:69723956-69723975 None:intergenic 35.0%
! GATAATCATTTTCACCGTTG+CGG - chr7_1:69723957-69723976 None:intergenic 35.0%
AGAACCAATTTAGTGTGACT+AGG + chr7_1:69724278-69724297 Msa1034290:intron 35.0%
AACACCTAGTCACACTAAAT+TGG - chr7_1:69724285-69724304 None:intergenic 35.0%
! AGACATGTGTCATTGTTGTT+TGG + chr7_1:69724337-69724356 Msa1034290:intron 35.0%
!! GACATGTGTCATTGTTGTTT+GGG + chr7_1:69724338-69724357 Msa1034290:intron 35.0%
TTTATTGCTCGAAGCATGTA+TGG - chr7_1:69724388-69724407 None:intergenic 35.0%
TAGATGTGATGTCCATGATA+TGG + chr7_1:69724426-69724445 Msa1034290:intron 35.0%
GTTGTCATATAGGAATCAAC+TGG + chr7_1:69724472-69724491 Msa1034290:intron 35.0%
AAATTGGGGATGTGATATGA+GGG + chr7_1:69724555-69724574 Msa1034290:intron 35.0%
TGTATATACACGTGCACTTA+TGG + chr7_1:69724735-69724754 Msa1034290:intron 35.0%
GTTCTTCAATGTGCTAAACA+AGG + chr7_1:69724836-69724855 Msa1034290:CDS 35.0%
! TTTCACTTGCTGCTTAACTA+TGG + chr7_1:69724883-69724902 Msa1034290:CDS 35.0%
!! ACTCTAAGAGTATTGGAACA+TGG - chr7_1:69724972-69724991 None:intergenic 35.0%
!!! TGTTGCAACTTGCTTTTTGA+AGG + chr7_1:69724993-69725012 Msa1034290:intron 35.0%
!!! GTTGCAACTTGCTTTTTGAA+GGG + chr7_1:69724994-69725013 Msa1034290:intron 35.0%
!!! ACTTGCTTTTTGAAGGGTTT+TGG + chr7_1:69725000-69725019 Msa1034290:intron 35.0%
! CTTAAACCTTGGGATTTTAG+AGG - chr7_1:69725139-69725158 None:intergenic 35.0%
GAGAACAAAAATATGAAGGG+AGG - chr7_1:69725199-69725218 None:intergenic 35.0%
ATTCATCTATCTTAACCTGC+AGG - chr7_1:69725246-69725265 None:intergenic 35.0%
ATACGAATAAAACAGAGGGA+AGG - chr7_1:69725456-69725475 None:intergenic 35.0%
CGGAATACGAATAAAACAGA+GGG - chr7_1:69725460-69725479 None:intergenic 35.0%
ACGGAATACGAATAAAACAG+AGG - chr7_1:69725461-69725480 None:intergenic 35.0%
! GTTTTTATGTGATACGTTGG+GGG - chr7_1:69725494-69725513 None:intergenic 35.0%
!!! GCGTTAATTAGCTCTACTTT+TGG + chr7_1:69725599-69725618 Msa1034290:intron 35.0%
!! CTACTTTTGGCTAGTAGTTT+AGG + chr7_1:69725612-69725631 Msa1034290:intron 35.0%
TGAAGCTTATGTTAGTTCAC+TGG + chr7_1:69725817-69725836 Msa1034290:intron 35.0%
ATTAGGGATGAAAACCAAGA+AGG - chr7_1:69726063-69726082 None:intergenic 35.0%
! TGGTTTTCATCCCTAATTGT+TGG + chr7_1:69726066-69726085 Msa1034290:intron 35.0%
! GGTTTTCATCCCTAATTGTT+GGG + chr7_1:69726067-69726086 Msa1034290:intron 35.0%
! GTTTTCATCCCTAATTGTTG+GGG + chr7_1:69726068-69726087 Msa1034290:intron 35.0%
! GGTCTTTCTCATTTAGTTTC+GGG + chr7_1:69726140-69726159 Msa1034290:intron 35.0%
!! TTCTCATTTAGTTTCGGGTT+TGG + chr7_1:69726145-69726164 Msa1034290:intron 35.0%
AGATTGGATAAGTGTGGAAT+TGG - chr7_1:69726269-69726288 None:intergenic 35.0%
AATATACACCATGTGATGTC+TGG + chr7_1:69726331-69726350 Msa1034290:intron 35.0%
!! AAGTAACTACTGGTTTCTTC+AGG - chr7_1:69726374-69726393 None:intergenic 35.0%
TGTTCCTCAAGAGTCATATA+TGG + chr7_1:69726431-69726450 Msa1034290:CDS 35.0%
AGAACCATATATGACTCTTG+AGG - chr7_1:69726438-69726457 None:intergenic 35.0%
TATATGGTTCTTCCTTTCTC+TGG + chr7_1:69726447-69726466 Msa1034290:CDS 35.0%
ATATGGTTCTTCCTTTCTCT+GGG + chr7_1:69726448-69726467 Msa1034290:CDS 35.0%
CATGTAATTTACAACCTGCT+TGG - chr7_1:69726497-69726516 None:intergenic 35.0%
TTTAGATAAGCGCAAAGAGA+TGG + chr7_1:69726576-69726595 Msa1034290:intron 35.0%
GGAAAATGTTAATGCAGACA+TGG - chr7_1:69726723-69726742 None:intergenic 35.0%
AGGTATGGATGTTCTCTAAA+AGG - chr7_1:69726852-69726871 None:intergenic 35.0%
TGTTAATATAAGCGGAGGTA+TGG - chr7_1:69726867-69726886 None:intergenic 35.0%
TAAAAACCTGTCTGCACAAA+AGG - chr7_1:69727443-69727462 None:intergenic 35.0%
! CACTGATTGTAAGTACAGAA+GGG - chr7_1:69727547-69727566 None:intergenic 35.0%
! TCACTGATTGTAAGTACAGA+AGG - chr7_1:69727548-69727567 None:intergenic 35.0%
! TTGTTATTGAGGTTTGAACG+TGG + chr7_1:69727649-69727668 Msa1034290:intron 35.0%
ATCTTATGCTTATCACCTTC+AGG - chr7_1:69727707-69727726 None:intergenic 35.0%
TGAAGGTGATAAGCATAAGA+TGG + chr7_1:69727706-69727725 Msa1034290:intron 35.0%
AGCATAAGATGGCAAAACTT+TGG + chr7_1:69727717-69727736 Msa1034290:intron 35.0%
GCATAAGATGGCAAAACTTT+GGG + chr7_1:69727718-69727737 Msa1034290:intron 35.0%
CATAAGATGGCAAAACTTTG+GGG + chr7_1:69727719-69727738 Msa1034290:intron 35.0%
! TGTATGTTGTGCTACCTTTT+GGG + chr7_1:69727816-69727835 Msa1034290:intron 35.0%
TGTGTAGTTCAAAACCCAAA+AGG - chr7_1:69727833-69727852 None:intergenic 35.0%
ACTGTTACCATACATATGCT+TGG + chr7_1:69727927-69727946 Msa1034290:intron 35.0%
ATAAAGATCCACTCTGAACA+GGG - chr7_1:69728017-69728036 None:intergenic 35.0%
AATAAAGATCCACTCTGAAC+AGG - chr7_1:69728018-69728037 None:intergenic 35.0%
TGGATCTTTATTGTCACGTA+AGG + chr7_1:69728026-69728045 Msa1034290:CDS 35.0%
CATAGTCAGGAAAAGGATAT+TGG + chr7_1:69728072-69728091 Msa1034290:CDS 35.0%
GATATTGGGAAAATGCAATC+TGG + chr7_1:69728087-69728106 Msa1034290:CDS 35.0%
!!! CATATGTTTTGACTGTGTAG+CGG - chr7_1:69728181-69728200 None:intergenic 35.0%
! AATTCATTGCTGGTCTGTAA+TGG - chr7_1:69728258-69728277 None:intergenic 35.0%
ATTGAACTTTAATCGAGCTG+TGG + chr7_1:69728275-69728294 Msa1034290:CDS 35.0%
GTCATCAGATTCAGAATCAT+TGG - chr7_1:69728301-69728320 None:intergenic 35.0%
GATTGCAGAATATCACTTGT+TGG + chr7_1:69728339-69728358 Msa1034290:CDS 35.0%
!!! TGGTTTTGAAGCTTCTGAAA+TGG + chr7_1:69728359-69728378 Msa1034290:CDS 35.0%
CTAAGTAATATGGTGCGTAA+AGG + chr7_1:69728387-69728406 Msa1034290:CDS 35.0%
GAATAGACTCACATTTCTGT+TGG - chr7_1:69728471-69728490 None:intergenic 35.0%
GTATCAATGTAGACGATTTC+TGG + chr7_1:69728575-69728594 Msa1034290:intron 35.0%
!! TCCTGCATTTGTGTTTTTAC+AGG + chr7_1:69728680-69728699 Msa1034290:intron 35.0%
!! CCTGCATTTGTGTTTTTACA+GGG + chr7_1:69728681-69728700 Msa1034290:intron 35.0%
ATTACGCTGTTAAAACCTCT+TGG + chr7_1:69728743-69728762 Msa1034290:CDS 35.0%
!! TGTGTTCTGTGTCTACTTTT+TGG + chr7_1:69728874-69728893 Msa1034290:intron 35.0%
!!! AGTCTTTTTTAGGAGTTTGG+AGG + chr7_1:69728983-69729002 Msa1034290:intron 35.0%
!!! GTCTTTTTTAGGAGTTTGGA+GGG + chr7_1:69728984-69729003 Msa1034290:intron 35.0%
! TTGATTATGCTGCTTCTTGT+AGG + chr7_1:69729238-69729257 Msa1034290:CDS 35.0%
GGAATTAAAGAGACGACAAA+AGG + chr7_1:69729293-69729312 Msa1034290:CDS 35.0%
TAAGAATCGATGATGACTTG+AGG + chr7_1:69729334-69729353 Msa1034290:CDS 35.0%
AAGAATCGATGATGACTTGA+GGG + chr7_1:69729335-69729354 Msa1034290:CDS 35.0%
! TGAGGCTTATAAGCTTTATG+AGG + chr7_1:69729410-69729429 Msa1034290:CDS 35.0%
ATCTCTAAGCATCATGAGAT+GGG + chr7_1:69729462-69729481 Msa1034290:CDS 35.0%
GATGGGATTTAAGAAAGCAA+TGG + chr7_1:69729479-69729498 Msa1034290:CDS 35.0%
TGTTACGTACTTGAATGATC+CGG + chr7_1:69729545-69729564 Msa1034290:CDS 35.0%
TGTGATAAGATTGATCCTGA+TGG + chr7_1:69729621-69729640 Msa1034290:CDS 35.0%
ATAAGCCTCCATATTCAAAG+AGG + chr7_1:69729688-69729707 Msa1034290:CDS 35.0%
TAAGCCTCCATATTCAAAGA+GGG + chr7_1:69729689-69729708 Msa1034290:CDS 35.0%
TTCAACTGTTCCATGAAAAG+AGG + chr7_1:69729963-69729982 Msa1034290:three_prime_UTR 35.0%
! GATTTTCTCTCCTCTTTTCA+TGG - chr7_1:69729976-69729995 None:intergenic 35.0%
ATGTCGTCGAAGTTATTCGA+CGG + chr7_1:69723823-69723842 Msa1034290:CDS 40.0%
ACAGTGTCAAATTCATCAGG+TGG - chr7_1:69723880-69723899 None:intergenic 40.0%
CACAATCACGTACGTGTTTA+CGG - chr7_1:69723993-69724012 None:intergenic 40.0%
ATGGTATCAGCATGTTTGAC+AGG - chr7_1:69724241-69724260 None:intergenic 40.0%
CATGGACATCACATCTATCT+CGG - chr7_1:69724423-69724442 None:intergenic 40.0%
TGGAAGACATGTCCATATCA+TGG - chr7_1:69724441-69724460 None:intergenic 40.0%
! TGGATCATGCAAAAGTGTGT+AGG - chr7_1:69724505-69724524 None:intergenic 40.0%
! TACACACTTTTGCATGATCC+AGG + chr7_1:69724504-69724523 Msa1034290:intron 40.0%
! ACACACTTTTGCATGATCCA+GGG + chr7_1:69724505-69724524 Msa1034290:intron 40.0%
CAAATTGGGGATGTGATATG+AGG + chr7_1:69724554-69724573 Msa1034290:intron 40.0%
AATTGGGGATGTGATATGAG+GGG + chr7_1:69724556-69724575 Msa1034290:intron 40.0%
GTGGCTATATACATAGAGTG+TGG - chr7_1:69724707-69724726 None:intergenic 40.0%
GTGTATATACACGTAGAGTG+TGG - chr7_1:69724726-69724745 None:intergenic 40.0%
! GCAACACACTCTAAGAGTAT+TGG - chr7_1:69724979-69724998 None:intergenic 40.0%
!! TGCTTTTTGAAGGGTTTTGG+AGG + chr7_1:69725003-69725022 Msa1034290:intron 40.0%
!!! GCTTTTTGAAGGGTTTTGGA+GGG + chr7_1:69725004-69725023 Msa1034290:intron 40.0%
!!! ATTTTAGAGGGTTTTGGAGG+GGG - chr7_1:69725126-69725145 None:intergenic 40.0%
!!! GATTTTAGAGGGTTTTGGAG+GGG - chr7_1:69725127-69725146 None:intergenic 40.0%
!!! GGATTTTAGAGGGTTTTGGA+GGG - chr7_1:69725128-69725147 None:intergenic 40.0%
!! CTTGGGATTTTAGAGGGTTT+TGG - chr7_1:69725132-69725151 None:intergenic 40.0%
!! CAAAACCCTCTAAAATCCCA+AGG + chr7_1:69725130-69725149 Msa1034290:intron 40.0%
TATTACTGTATGTGACCTGC+AGG + chr7_1:69725228-69725247 Msa1034290:intron 40.0%
!! AAAAGCATCTAGTTCAAGGG+AGG + chr7_1:69725557-69725576 Msa1034290:intron 40.0%
! AGGAAGATTCTGGTTATGGT+TGG + chr7_1:69725577-69725596 Msa1034290:intron 40.0%
CCACAAATCCCCAACAATTA+GGG - chr7_1:69726079-69726098 None:intergenic 40.0%
ACCACAAATCCCCAACAATT+AGG - chr7_1:69726080-69726099 None:intergenic 40.0%
TAATTGTTGGGGATTTGTGG+TGG + chr7_1:69726079-69726098 Msa1034290:intron 40.0%
TGGTGGCTAATATGACTCTA+TGG + chr7_1:69726096-69726115 Msa1034290:intron 40.0%
ATTAGTGGTCATCTAGATGC+AGG - chr7_1:69726183-69726202 None:intergenic 40.0%
CAGATCTTTAACCCAGAGAA+AGG - chr7_1:69726462-69726481 None:intergenic 40.0%
AGTGAACGTCGAGTTTAAAC+TGG + chr7_1:69727181-69727200 Msa1034290:intron 40.0%
! TTTGACGCATTGATACTTGG+TGG + chr7_1:69727251-69727270 Msa1034290:intron 40.0%
TCAGAAACTTCACTTCAGAC+TGG - chr7_1:69727345-69727364 None:intergenic 40.0%
! GTCTGAAGTGAAGTTTCTGA+TGG + chr7_1:69727345-69727364 Msa1034290:intron 40.0%
ACAGAAGGGATACTAATGCA+AGG - chr7_1:69727533-69727552 None:intergenic 40.0%
! CTGTATGTTGTGCTACCTTT+TGG + chr7_1:69727815-69727834 Msa1034290:intron 40.0%
ATGGATAGCATGTCTGAATC+AGG + chr7_1:69727984-69728003 Msa1034290:intron 40.0%
TATTGTCACGTAAGGTGACT+AGG + chr7_1:69728034-69728053 Msa1034290:CDS 40.0%
AGTAATATGGTGCGTAAAGG+TGG + chr7_1:69728390-69728409 Msa1034290:CDS 40.0%
AAGTTGACGCACATAGTAGT+CGG + chr7_1:69728441-69728460 Msa1034290:CDS 40.0%
CCCTGTAAAAACACAAATGC+AGG - chr7_1:69728684-69728703 None:intergenic 40.0%
GTATTGAGAACTGTTGCTCT+AGG + chr7_1:69728715-69728734 Msa1034290:CDS 40.0%
! TGTTAAAACCTCTTGGCTTG+AGG + chr7_1:69728750-69728769 Msa1034290:CDS 40.0%
AACAAGTCCATGTTCTACGA+CGG + chr7_1:69728791-69728810 Msa1034290:CDS 40.0%
!! TTTTTAGGAGTTTGGAGGGT+AGG + chr7_1:69728988-69729007 Msa1034290:intron 40.0%
!! TTTTAGGAGTTTGGAGGGTA+GGG + chr7_1:69728989-69729008 Msa1034290:intron 40.0%
TGGTTCAGGTCAGAAAAAGT+TGG + chr7_1:69729131-69729150 Msa1034290:intron 40.0%
TTCAGGTCAGAAAAAGTTGG+TGG + chr7_1:69729134-69729153 Msa1034290:intron 40.0%
AAAGAGACGACAAAAGGAGA+TGG + chr7_1:69729299-69729318 Msa1034290:CDS 40.0%
GCAAAGTTAGGTCCTCTTTA+TGG + chr7_1:69729357-69729376 Msa1034290:CDS 40.0%
! GGCTTTTGGTATCCATAAAG+AGG - chr7_1:69729372-69729391 None:intergenic 40.0%
! GGCTTATAAGCTTTATGAGG+AGG + chr7_1:69729413-69729432 Msa1034290:CDS 40.0%
TGAGGAGGATTGTAAGTCTA+AGG + chr7_1:69729428-69729447 Msa1034290:CDS 40.0%
GAGGAGGATTGTAAGTCTAA+GGG + chr7_1:69729429-69729448 Msa1034290:CDS 40.0%
CATCTCATGATGCTTAGAGA+TGG - chr7_1:69729463-69729482 None:intergenic 40.0%
CATCTCTAAGCATCATGAGA+TGG + chr7_1:69729461-69729480 Msa1034290:CDS 40.0%
GGGATTTAAGAAAGCAATGG+AGG + chr7_1:69729482-69729501 Msa1034290:CDS 40.0%
AAGAAAGCAATGGAGGAGTT+TGG + chr7_1:69729489-69729508 Msa1034290:CDS 40.0%
CTTGAATGATCCGGTTAGAA+AGG + chr7_1:69729554-69729573 Msa1034290:CDS 40.0%
AAACATTGAGAGCCACTTCA+AGG + chr7_1:69729578-69729597 Msa1034290:CDS 40.0%
AACATTGAGAGCCACTTCAA+GGG + chr7_1:69729579-69729598 Msa1034290:CDS 40.0%
TCAAAATCTTCCCCTTGAAG+TGG - chr7_1:69729593-69729612 None:intergenic 40.0%
! ACTTCAAGGGGAAGATTTTG+AGG + chr7_1:69729592-69729611 Msa1034290:CDS 40.0%
TGTCGTCGAAGTTATTCGAC+GGG + chr7_1:69723824-69723843 Msa1034290:CDS 45.0%
!! GGTTTTGATCTTTCCCGCAA+CGG + chr7_1:69723940-69723959 Msa1034290:CDS 45.0%
TCCAAAGGCTGCAAGATGAT+CGG + chr7_1:69724107-69724126 Msa1034290:CDS 45.0%
!! GCGTTCGGTGTATACTTAAC+AGG - chr7_1:69724219-69724238 None:intergenic 45.0%
GGTCAGACATTTACCTGTCT+CGG + chr7_1:69724359-69724378 Msa1034290:intron 45.0%
TCACATCTATCTCGGTAGCA+CGG - chr7_1:69724415-69724434 None:intergenic 45.0%
CAAGTGAAAGCTGCTTGTCT+AGG - chr7_1:69724872-69724891 None:intergenic 45.0%
! CACTTGCTGCTTAACTATGG+AGG + chr7_1:69724886-69724905 Msa1034290:CDS 45.0%
GCTGTCAAAATACTCGCCTA+TGG + chr7_1:69724908-69724927 Msa1034290:CDS 45.0%
CTGATCTGCATCAAAGCCAT+AGG - chr7_1:69724927-69724946 None:intergenic 45.0%
!! TGGCTTTGATGCAGATCAGA+TGG + chr7_1:69724928-69724947 Msa1034290:CDS 45.0%
!! GGGATTTTAGAGGGTTTTGG+AGG - chr7_1:69725129-69725148 None:intergenic 45.0%
ATGTACCAGACCTTGTACTC+TGG - chr7_1:69725349-69725368 None:intergenic 45.0%
AAAACAGAGGGAAGGACGAA+AGG - chr7_1:69725448-69725467 None:intergenic 45.0%
CGTTGGGGGATAGGATAATA+CGG - chr7_1:69725480-69725499 None:intergenic 45.0%
TATGTGATACGTTGGGGGAT+AGG - chr7_1:69725489-69725508 None:intergenic 45.0%
AGTTCAAGGGAGGAAGATTC+TGG + chr7_1:69725567-69725586 Msa1034290:intron 45.0%
! AGGGAGGAAGATTCTGGTTA+TGG + chr7_1:69725573-69725592 Msa1034290:intron 45.0%
CCCTAATTGTTGGGGATTTG+TGG + chr7_1:69726076-69726095 Msa1034290:intron 45.0%
CCTCAGAGATTGGATAAGTG+TGG - chr7_1:69726275-69726294 None:intergenic 45.0%
CCACACTTATCCAATCTCTG+AGG + chr7_1:69726272-69726291 Msa1034290:intron 45.0%
GGGTTAAAGATCTGTGTGAC+TGG + chr7_1:69726468-69726487 Msa1034290:CDS 45.0%
! CGCTTTGACGCATTGATACT+TGG + chr7_1:69727248-69727267 Msa1034290:intron 45.0%
! AGTGAACCTTTTGTGCAGAC+AGG + chr7_1:69727434-69727453 Msa1034290:intron 45.0%
CAGTCAGCCAAGCATATGTA+TGG - chr7_1:69727937-69727956 None:intergenic 45.0%
CATACATATGCTTGGCTGAC+TGG + chr7_1:69727935-69727954 Msa1034290:intron 45.0%
ATTTGAATCTGCGGCTCTTG+AGG - chr7_1:69728118-69728137 None:intergenic 45.0%
! TCATTGCTGGTCTGTAATGG+AGG - chr7_1:69728255-69728274 None:intergenic 45.0%
! CTGAATCTGATGACGATGAC+AGG + chr7_1:69728307-69728326 Msa1034290:CDS 45.0%
AATATGGTGCGTAAAGGTGG+AGG + chr7_1:69728393-69728412 Msa1034290:CDS 45.0%
AGTTGACGCACATAGTAGTC+GGG + chr7_1:69728442-69728461 Msa1034290:CDS 45.0%
!! GTGTTTTTACAGGGAAAGGG+AGG + chr7_1:69728690-69728709 Msa1034290:intron 45.0%
ATCACAATCCTCAAGCCAAG+AGG - chr7_1:69728761-69728780 None:intergenic 45.0%
!! AGGTCAGAAAAAGTTGGTGG+AGG + chr7_1:69729137-69729156 Msa1034290:intron 45.0%
!! TGTTGACTTAGCACAAGTGC+TGG + chr7_1:69729215-69729234 Msa1034290:CDS 45.0%
ACGACAAAAGGAGATGGAGA+TGG + chr7_1:69729305-69729324 Msa1034290:CDS 45.0%
GATGACTTGAGGGCAAAGTT+AGG + chr7_1:69729345-69729364 Msa1034290:CDS 45.0%
ACATTGAGAGCCACTTCAAG+GGG + chr7_1:69729580-69729599 Msa1034290:CDS 45.0%
TGTGCCCTCTTTGAATATGG+AGG - chr7_1:69729696-69729715 None:intergenic 45.0%
CTCTGTGCCCTCTTTGAATA+TGG - chr7_1:69729699-69729718 None:intergenic 45.0%
! TATTCAAAGAGGGCACAGAG+TGG + chr7_1:69729699-69729718 Msa1034290:CDS 45.0%
TAATGATCAGCCCGAAGAAC+AGG + chr7_1:69729722-69729741 Msa1034290:CDS 45.0%
ATTGTGCACCTCCTGTTCTT+CGG - chr7_1:69729736-69729755 None:intergenic 45.0%
! AAGAACAGGAGGTGCACAAT+GGG + chr7_1:69729736-69729755 Msa1034290:CDS 45.0%
!! TATTTGATAAAATTATTAAA+AGG - chr7_1:69729909-69729928 None:intergenic 5.0%
AACGGCGGTCAAGTTCACAT+CGG + chr7_1:69723919-69723938 Msa1034290:CDS 50.0%
ACCGATCATCTTGCAGCCTT+TGG - chr7_1:69724111-69724130 None:intergenic 50.0%
CAGCATGTTTGACAGGCGTT+CGG - chr7_1:69724234-69724253 None:intergenic 50.0%
AAAGCTGCTTGTCTAGGCAG+AGG - chr7_1:69724866-69724885 None:intergenic 50.0%
!!! AGGGTTTTGGAGGGCTAAGT+TGG + chr7_1:69725013-69725032 Msa1034290:intron 50.0%
TGTTTGGGCTCCAGAGTACA+AGG + chr7_1:69725336-69725355 Msa1034290:CDS 50.0%
ACCATGTGATGTCTGGCAGT+GGG + chr7_1:69726338-69726357 Msa1034290:intron 50.0%
TGTGTGACTGGAATCCAAGC+AGG + chr7_1:69726480-69726499 Msa1034290:CDS 50.0%
GACTGTTCTTACGCTCCTGA+AGG + chr7_1:69727689-69727708 Msa1034290:intron 50.0%
CATATGCTTGGCTGACTGGT+TGG + chr7_1:69727939-69727958 Msa1034290:intron 50.0%
AGATCCACTCTGAACAGGGT+AGG - chr7_1:69728013-69728032 None:intergenic 50.0%
AGCGCAGCATAGTCAGGAAA+AGG + chr7_1:69728065-69728084 Msa1034290:CDS 50.0%
!!! TGTTTTGACTGTGTAGCGGC+AGG - chr7_1:69728177-69728196 None:intergenic 50.0%
CACTGTACCGTCGTAGAACA+TGG - chr7_1:69728801-69728820 None:intergenic 50.0%
! GAGTTTGGAGGGTAGGGTTT+TGG + chr7_1:69728995-69729014 Msa1034290:intron 50.0%
!! TTTGGAGGGTAGGGTTTTGG+AGG + chr7_1:69728998-69729017 Msa1034290:intron 50.0%
!!! TTGGAGGGTAGGGTTTTGGA+GGG + chr7_1:69728999-69729018 Msa1034290:intron 50.0%
!! AGTTGGTGGAGGCATCCAAT+AGG + chr7_1:69729148-69729167 Msa1034290:CDS 50.0%
TTGTGCACCTCCTGTTCTTC+GGG - chr7_1:69729735-69729754 None:intergenic 50.0%
! GAAGAACAGGAGGTGCACAA+TGG + chr7_1:69729735-69729754 Msa1034290:CDS 50.0%
CTCAAGGCCGTCGAAGAGAA+CGG + chr7_1:69723901-69723920 Msa1034290:CDS 55.0%
TTGACCGCCGTTCTCTTCGA+CGG - chr7_1:69723911-69723930 None:intergenic 55.0%
GCATGTATGGTGTCCGAGAC+AGG - chr7_1:69724375-69724394 None:intergenic 55.0%
CACCATGTGATGTCTGGCAG+TGG + chr7_1:69726337-69726356 Msa1034290:intron 55.0%
! TGATGTCTGGCAGTGGGCTT+TGG + chr7_1:69726344-69726363 Msa1034290:intron 55.0%
GAGTCCTACCCTGTTCAGAG+TGG + chr7_1:69728006-69728025 Msa1034290:CDS 55.0%
CTCAACAGCGCAGCATAGTC+AGG + chr7_1:69728059-69728078 Msa1034290:CDS 55.0%
GCGCGTTTGCTTCGAGATTG+AGG + chr7_1:69729272-69729291 Msa1034290:CDS 55.0%
TGATCAGCCCGAAGAACAGG+AGG + chr7_1:69729725-69729744 Msa1034290:CDS 55.0%
AAGGCCGTCGAAGAGAACGG+CGG + chr7_1:69723904-69723923 Msa1034290:CDS 60.0%
GGGCTCCAGAGTACAAGGTC+TGG + chr7_1:69725341-69725360 Msa1034290:intron 60.0%
GCCCACTGCCAGACATCACA+TGG - chr7_1:69726342-69726361 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 69723790 69729999 69723790 ID=Msa1034290;Name=Msa1034290
chr7_1 mRNA 69723790 69729999 69723790 ID=Msa1034290-mRNA-1;Parent=Msa1034290;Name=Msa1034290-mRNA-1;_AED=0.31;_eAED=0.33;_QI=33|0.77|0.7|1|1|1|10|211|665
chr7_1 exon 69723790 69723999 69723790 ID=Msa1034290-mRNA-1:exon:16496;Parent=Msa1034290-mRNA-1
chr7_1 exon 69724086 69724128 69724086 ID=Msa1034290-mRNA-1:exon:16497;Parent=Msa1034290-mRNA-1
chr7_1 exon 69724825 69724949 69724825 ID=Msa1034290-mRNA-1:exon:16498;Parent=Msa1034290-mRNA-1
chr7_1 exon 69725250 69725357 69725250 ID=Msa1034290-mRNA-1:exon:16499;Parent=Msa1034290-mRNA-1
chr7_1 exon 69726357 69726501 69726357 ID=Msa1034290-mRNA-1:exon:16500;Parent=Msa1034290-mRNA-1
chr7_1 exon 69726581 69726650 69726581 ID=Msa1034290-mRNA-1:exon:16501;Parent=Msa1034290-mRNA-1
chr7_1 exon 69727508 69727571 69727508 ID=Msa1034290-mRNA-1:exon:16502;Parent=Msa1034290-mRNA-1
chr7_1 exon 69728006 69728478 69728006 ID=Msa1034290-mRNA-1:exon:16503;Parent=Msa1034290-mRNA-1
chr7_1 exon 69728702 69728844 69728702 ID=Msa1034290-mRNA-1:exon:16504;Parent=Msa1034290-mRNA-1
chr7_1 exon 69729139 69729999 69729139 ID=Msa1034290-mRNA-1:exon:16505;Parent=Msa1034290-mRNA-1
chr7_1 five_prime_UTR 69723790 69723822 69723790 ID=Msa1034290-mRNA-1:five_prime_utr;Parent=Msa1034290-mRNA-1
chr7_1 CDS 69723823 69723999 69723823 ID=Msa1034290-mRNA-1:cds;Parent=Msa1034290-mRNA-1
chr7_1 CDS 69724086 69724128 69724086 ID=Msa1034290-mRNA-1:cds;Parent=Msa1034290-mRNA-1
chr7_1 CDS 69724825 69724949 69724825 ID=Msa1034290-mRNA-1:cds;Parent=Msa1034290-mRNA-1
chr7_1 CDS 69725250 69725357 69725250 ID=Msa1034290-mRNA-1:cds;Parent=Msa1034290-mRNA-1
chr7_1 CDS 69726357 69726501 69726357 ID=Msa1034290-mRNA-1:cds;Parent=Msa1034290-mRNA-1
chr7_1 CDS 69726581 69726650 69726581 ID=Msa1034290-mRNA-1:cds;Parent=Msa1034290-mRNA-1
chr7_1 CDS 69727508 69727571 69727508 ID=Msa1034290-mRNA-1:cds;Parent=Msa1034290-mRNA-1
chr7_1 CDS 69728006 69728478 69728006 ID=Msa1034290-mRNA-1:cds;Parent=Msa1034290-mRNA-1
chr7_1 CDS 69728702 69728844 69728702 ID=Msa1034290-mRNA-1:cds;Parent=Msa1034290-mRNA-1
chr7_1 CDS 69729139 69729788 69729139 ID=Msa1034290-mRNA-1:cds;Parent=Msa1034290-mRNA-1
chr7_1 three_prime_UTR 69729789 69729999 69729789 ID=Msa1034290-mRNA-1:three_prime_utr;Parent=Msa1034290-mRNA-1
Gene Sequence

>Msa1034290

ATGTCGTCGAAGTTATTCGACGGGTTTAACGTTTTCATATCGCGACACTTATTTCCACCTGATGAATTTGACACTGTTCTCAAGGCCGTCGAAGAGAACGGCGGTCAAGTTCACATCGGTTTTGATCTTTCCCGCAACGGTGAAAATGATTATCATATTATTTCTTGCCGTAAACACTATAAATTTGAAGATCTAAAATCCAAAGGCTGCAAGATGATCGGTTATAGATGTGTTCTTCAATGTGCTAAACAAGGAAGACCTCTGCCTAGACAAGCAGCTTTCACTTGCTGCTTAACTATGGAGGCTGTCAAAATACTCGCCTATGGCTTTGATGCAGATCAGATGGTTAAGATAGATGAATTAATGATTGAAATGGGGGGAGCTCTACAAACTACACCGTCATCAGATTTAAACTCTGTCATTGTGAAAAATGTTTGGGCTCCAGAGTACAAGTGGGCTTTGGATGTCCTGAAGAAACCAGTAGTTACTTATGAATGGTTAAAGCAATGCTCAGATGAGCATCAAGTTGTTCCTCAAGAGTCATATATGGTTCTTCCTTTCTCTGGGTTAAAGATCTGTGTGACTGGAATCCAAGCAGATAAGCGCAAAGAGATGGAAAAACTTATTCTACAAAATGGTGGAAAATACTCTGCAGAACTGACAAAGAATGTGCTGTCTTCTACTGCACTGCCTTGCATTAGTATCCCTTCTGTACTTACAATCAGTGAAAAAGAGTCCTACCCTGTTCAGAGTGGATCTTTATTGTCACGTAAGGTGACTAGGAACTCAACAGCGCAGCATAGTCAGGAAAAGGATATTGGGAAAATGCAATCTGGTTCATCCTCAAGAGCCGCAGATTCAAATATACTAGTTCATTGCGCCAAGTCTTTAAATGTTGATCCTGCCGCTACACAGTCAAAACATATGTTGTCTGTTTCTAATGTTCCATTTTTTGTTAAAGAGGCAGATGCTGAAGCACCTCCATTACAGACCAGCAATGAATTGAACTTTAATCGAGCTGTGGCCAATGATTCTGAATCTGATGACGATGACAGGTATTTAGCAGATTGCAGAATATCACTTGTTGGTTTTGAAGCTTCTGAAATGGAGAAGCTAAGTAATATGGTGCGTAAAGGTGGAGGCTTCCAATGCTTGTATTTAAATGATAAGTTGACGCACATAGTAGTCGGGAATCCAACAGAAATGGAAAGGGAGGATGTATTGAGAACTGTTGCTCTAGGTGTCAATTACGCTGTTAAAACCTCTTGGCTTGAGGATTGTGATCGCGAAAAAAAACAAGTCCATGTTCTACGACGGTACAGTGCATATGATATTCTTTTTCCAAAAGGTCAGAAAAAGTTGGTGGAGGCATCCAATAGGATAAAAAAGAAGAATCTAGAAATGAAGGAATTGACAAAAGCTCATGTTGACTTAGCACAAGTGCTGGTTGATTATGCTGCTTCTTGTAGGCTAGCTCGCACGCGCGTTTGCTTCGAGATTGAGGAATTAAAGAGACGACAAAAGGAGATGGAGATGGAATATGTAAGAATCGATGATGACTTGAGGGCAAAGTTAGGTCCTCTTTATGGATACCAAAAGCCTAAAAATGAGTTGAAGATTGAGGCTTATAAGCTTTATGAGGAGGATTGTAAGTCTAAGGGAATAGTTGCCATCTCTAAGCATCATGAGATGGGATTTAAGAAAGCAATGGAGGAGTTTGGTGACATTGCGAAAGAGAGCTGTCATCGCAACTTTGTTACGTACTTGAATGATCCGGTTAGAAAGGAAAACATTGAGAGCCACTTCAAGGGGAAGATTTTGAGGTTTTCTTGTGATAAGATTGATCCTGATGGTGCAAAATTTGTTTATAAGTTTGCGTGTGAAGTGTCTGAATCTGATAAGCCTCCATATTCAAAGAGGGCACAGAGTGGTAATGATCAGCCCGAAGAACAGGAGGTGCACAATGGGACTGCTAAGAAAATGAAATATGAACCGTGA

Protein sequence

>Msa1034290

MSSKLFDGFNVFISRHLFPPDEFDTVLKAVEENGGQVHIGFDLSRNGENDYHIISCRKHYKFEDLKSKGCKMIGYRCVLQCAKQGRPLPRQAAFTCCLTMEAVKILAYGFDADQMVKIDELMIEMGGALQTTPSSDLNSVIVKNVWAPEYKWALDVLKKPVVTYEWLKQCSDEHQVVPQESYMVLPFSGLKICVTGIQADKRKEMEKLILQNGGKYSAELTKNVLSSTALPCISIPSVLTISEKESYPVQSGSLLSRKVTRNSTAQHSQEKDIGKMQSGSSSRAADSNILVHCAKSLNVDPAATQSKHMLSVSNVPFFVKEADAEAPPLQTSNELNFNRAVANDSESDDDDRYLADCRISLVGFEASEMEKLSNMVRKGGGFQCLYLNDKLTHIVVGNPTEMEREDVLRTVALGVNYAVKTSWLEDCDREKKQVHVLRRYSAYDILFPKGQKKLVEASNRIKKKNLEMKELTKAHVDLAQVLVDYAASCRLARTRVCFEIEELKRRQKEMEMEYVRIDDDLRAKLGPLYGYQKPKNELKIEAYKLYEEDCKSKGIVAISKHHEMGFKKAMEEFGDIAKESCHRNFVTYLNDPVRKENIESHFKGKILRFSCDKIDPDGAKFVYKFACEVSESDKPPYSKRAQSGNDQPEEQEVHNGTAKKMKYEP*