Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0380540 | XP_003603058.1 | 96.247 | 373 | 13 | 1 | 1 | 372 | 1 | 373 | 0.0 | 743 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0380540 | sp|Q9C635|HSFB4_ARATH | 55.443 | 395 | 104 | 14 | 1 | 371 | 1 | 347 | 2.48e-119 | 352 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0380540 | G7J6F2 | 96.247 | 373 | 13 | 1 | 1 | 372 | 1 | 373 | 0.0 | 743 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0380540 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015570 | Msa0380540 | 0.818430 | 1.968726e-52 | -8.615850e-47 |
| Msa0018920 | Msa0380540 | 0.807634 | 4.593478e-50 | -8.615850e-47 |
| Msa0029960 | Msa0380540 | 0.809186 | 2.142854e-50 | -8.615850e-47 |
| Msa0067060 | Msa0380540 | 0.838349 | 3.031144e-57 | -8.615850e-47 |
| Msa0112670 | Msa0380540 | 0.820106 | 8.172579e-53 | -8.615850e-47 |
| Msa0141640 | Msa0380540 | 0.841607 | 4.287377e-58 | -8.615850e-47 |
| Msa0156050 | Msa0380540 | 0.836713 | 7.965246e-57 | -8.615850e-47 |
| Msa0156090 | Msa0380540 | 0.830156 | 3.440845e-55 | -8.615850e-47 |
| Msa0170070 | Msa0380540 | 0.812626 | 3.857081e-51 | -8.615850e-47 |
| Msa0373170 | Msa0380540 | 0.803617 | 3.200875e-49 | -8.615850e-47 |
| Msa0380540 | Msa0381730 | 0.805236 | 1.471233e-49 | -8.615850e-47 |
| Msa0380540 | Msa0382740 | 0.817874 | 2.629813e-52 | -8.615850e-47 |
| Msa0380540 | Msa0382770 | 0.814063 | 1.864219e-51 | -8.615850e-47 |
| Msa0380540 | Msa0430080 | 0.977226 | 2.327496e-143 | -8.615850e-47 |
| Msa0380540 | Msa0430170 | 0.973362 | 2.665109e-136 | -8.615850e-47 |
| Msa0380540 | Msa0461550 | 0.802978 | 4.341337e-49 | -8.615850e-47 |
| Msa0380540 | Msa0500450 | 0.979589 | 2.666382e-148 | -8.615850e-47 |
| Msa0380540 | Msa0507920 | 0.805953 | 1.040870e-49 | -8.615850e-47 |
| Msa0380540 | Msa0521320 | 0.826992 | 2.000530e-54 | -8.615850e-47 |
| Msa0380540 | Msa0524800 | 0.823669 | 1.223029e-53 | -8.615850e-47 |
| Msa0380540 | Msa0525000 | 0.817764 | 2.784173e-52 | -8.615850e-47 |
| Msa0380540 | Msa0541740 | 0.835851 | 1.319082e-56 | -8.615850e-47 |
| Msa0380540 | Msa0554300 | 0.812741 | 3.639829e-51 | -8.615850e-47 |
| Msa0380540 | Msa0557850 | 0.823359 | 1.445293e-53 | -8.615850e-47 |
| Msa0380540 | Msa0561560 | 0.814009 | 1.916154e-51 | -8.615850e-47 |
| Msa0380540 | Msa0563940 | 0.803973 | 2.699902e-49 | -8.615850e-47 |
| Msa0380540 | Msa0564980 | 0.855142 | 7.691650e-62 | -8.615850e-47 |
| Msa0380540 | Msa0570010 | 0.844829 | 5.932614e-59 | -8.615850e-47 |
| Msa0380540 | Msa0586200 | 0.806395 | 8.400440e-50 | -8.615850e-47 |
| Msa0380540 | Msa0608350 | 0.822809 | 1.941543e-53 | -8.615850e-47 |
| Msa0380540 | Msa0612520 | 0.843443 | 1.397101e-58 | -8.615850e-47 |
| Msa0380540 | Msa0619710 | 0.807924 | 3.985531e-50 | -8.615850e-47 |
| Msa0380540 | Msa0648760 | 0.806042 | 9.967737e-50 | -8.615850e-47 |
| Msa0380540 | Msa0653160 | 0.821901 | 3.155268e-53 | -8.615850e-47 |
| Msa0380540 | Msa0654740 | 0.804438 | 2.159749e-49 | -8.615850e-47 |
| Msa0380540 | Msa0657210 | 0.815862 | 7.438951e-52 | -8.615850e-47 |
| Msa0380540 | Msa0660260 | 0.800705 | 1.271381e-48 | -8.615850e-47 |
| Msa0380540 | Msa0688620 | 0.835810 | 1.350672e-56 | -8.615850e-47 |
| Msa0380540 | Msa0691270 | 0.827491 | 1.519367e-54 | -8.615850e-47 |
| Msa0380540 | Msa0695560 | 0.811457 | 6.934803e-51 | -8.615850e-47 |
| Msa0380540 | Msa0700500 | 0.806165 | 9.388851e-50 | -8.615850e-47 |
| Msa0380540 | Msa0701250 | 0.833183 | 6.173801e-56 | -8.615850e-47 |
| Msa0380540 | Msa0749190 | 0.834963 | 2.211170e-56 | -8.615850e-47 |
| Msa0380540 | Msa0750520 | 0.836084 | 1.151157e-56 | -8.615850e-47 |
| Msa0380540 | Msa0778600 | 0.801820 | 7.518142e-49 | -8.615850e-47 |
| Msa0380540 | Msa0901150 | 0.812671 | 3.769370e-51 | -8.615850e-47 |
| Msa0380540 | Msa0965470 | 0.800848 | 1.188940e-48 | -8.615850e-47 |
| Msa0380540 | Msa0966710 | 0.831911 | 1.276250e-55 | -8.615850e-47 |
| Msa0380540 | Msa1000970 | 0.840150 | 1.034102e-57 | -8.615850e-47 |
| Msa0380540 | Msa1060900 | 0.818073 | 2.370603e-52 | -8.615850e-47 |
| Msa0380540 | Msa1071410 | 0.836127 | 1.122657e-56 | -8.615850e-47 |
| Msa0380540 | Msa1078880 | 0.831884 | 1.296247e-55 | -8.615850e-47 |
| Msa0380540 | Msa1078970 | 0.838343 | 3.042078e-57 | -8.615850e-47 |
| Msa0380540 | Msa1079640 | 0.824712 | 6.958860e-54 | -8.615850e-47 |
| Msa0380540 | Msa1082380 | 0.809057 | 2.283496e-50 | -8.615850e-47 |
| Msa0380540 | Msa1123970 | 0.802537 | 5.351525e-49 | -8.615850e-47 |
| Msa0380540 | Msa1130780 | 0.815614 | 8.446015e-52 | -8.615850e-47 |
| Msa0380540 | Msa1148630 | 0.801027 | 1.092675e-48 | -8.615850e-47 |
| Msa0380540 | Msa1162880 | 0.805960 | 1.037122e-49 | -8.615850e-47 |
| Msa0380540 | Msa1169190 | 0.829277 | 5.631624e-55 | -8.615850e-47 |
| Msa0380540 | Msa1169650 | 0.806394 | 8.403317e-50 | -8.615850e-47 |
| Msa0380540 | Msa1212700 | 0.804580 | 2.017443e-49 | -8.615850e-47 |
| Msa0380540 | Msa1219770 | 0.814162 | 1.773044e-51 | -8.615850e-47 |
| Msa0380540 | Msa1228580 | 0.810909 | 9.116019e-51 | -8.615850e-47 |
| Msa0380540 | Msa1228630 | 0.816627 | 5.015485e-52 | -8.615850e-47 |
| Msa0380540 | Msa1262570 | 0.801092 | 1.059916e-48 | -8.615850e-47 |
| Msa0380540 | Msa1266690 | 0.828403 | 9.167292e-55 | -8.615850e-47 |
| Msa0380540 | Msa1267930 | 0.833718 | 4.539493e-56 | -8.615850e-47 |
| Msa0380540 | Msa1297070 | 0.810956 | 8.905883e-51 | -8.615850e-47 |
| Msa0380540 | Msa1299980 | 0.831026 | 2.107337e-55 | -8.615850e-47 |
| Msa0380540 | Msa1308850 | 0.818786 | 1.634096e-52 | -8.615850e-47 |
| Msa0380540 | Msa1333360 | 0.822235 | 2.639752e-53 | -8.615850e-47 |
| Msa0380540 | Msa1341750 | 0.800514 | 1.390952e-48 | -8.615850e-47 |
| Msa0380540 | Msa1342810 | 0.833150 | 6.290632e-56 | -8.615850e-47 |
| Msa0380540 | Msa1361930 | 0.800369 | 1.488601e-48 | -8.615850e-47 |
| Msa0380540 | Msa1381800 | 0.831333 | 1.771411e-55 | -8.615850e-47 |
| Msa0380540 | Msa1389820 | 0.809484 | 1.849235e-50 | -8.615850e-47 |
| Msa0380540 | Msa1426110 | 0.804020 | 2.639132e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0380540 | MtrunA17_Chr3g0134031 | 96.247 | 373 | 13 | 1 | 1 | 372 | 1 | 373 | 0.0 | 743 |
| Msa0380540 | MtrunA17_Chr5g0441531 | 47.337 | 338 | 87 | 11 | 1 | 335 | 1 | 250 | 1.42e-87 | 265 |
| Msa0380540 | MtrunA17_Chr5g0397881 | 47.391 | 230 | 107 | 5 | 1 | 228 | 1 | 218 | 6.53e-59 | 194 |
| Msa0380540 | MtrunA17_Chr6g0472421 | 46.429 | 224 | 89 | 5 | 15 | 227 | 24 | 227 | 2.34e-55 | 185 |
| Msa0380540 | MtrunA17_Chr5g0402291 | 44.796 | 221 | 85 | 5 | 17 | 229 | 2 | 193 | 4.25e-51 | 172 |
| Msa0380540 | MtrunA17_Chr1g0203601 | 42.326 | 215 | 95 | 2 | 16 | 229 | 10 | 196 | 5.33e-51 | 172 |
| Msa0380540 | MtrunA17_Chr7g0257331 | 39.744 | 234 | 91 | 5 | 9 | 237 | 2 | 190 | 1.27e-47 | 161 |
| Msa0380540 | MtrunA17_Chr6g0467041 | 74.194 | 93 | 24 | 0 | 23 | 115 | 21 | 113 | 2.80e-46 | 160 |
| Msa0380540 | MtrunA17_Chr8g0375041 | 40.278 | 216 | 83 | 4 | 17 | 229 | 2 | 174 | 5.92e-45 | 155 |
| Msa0380540 | MtrunA17_Chr5g0410881 | 72.632 | 95 | 26 | 0 | 21 | 115 | 29 | 123 | 2.58e-44 | 159 |
| Msa0380540 | MtrunA17_Chr7g0260331 | 69.388 | 98 | 30 | 0 | 18 | 115 | 43 | 140 | 3.19e-43 | 154 |
| Msa0380540 | MtrunA17_Chr8g0378061 | 72.527 | 91 | 25 | 0 | 25 | 115 | 23 | 113 | 1.44e-41 | 152 |
| Msa0380540 | MtrunA17_Chr1g0204741 | 65.049 | 103 | 36 | 0 | 18 | 120 | 34 | 136 | 6.68e-41 | 146 |
| Msa0380540 | MtrunA17_Chr8g0379701 | 64.646 | 99 | 34 | 1 | 17 | 115 | 6 | 103 | 1.70e-39 | 144 |
| Msa0380540 | MtrunA17_Chr4g0039891 | 42.487 | 193 | 63 | 4 | 24 | 216 | 12 | 156 | 7.99e-39 | 144 |
| Msa0380540 | MtrunA17_Chr1g0185131 | 64.078 | 103 | 36 | 1 | 22 | 123 | 30 | 132 | 3.56e-38 | 140 |
| Msa0380540 | MtrunA17_Chr4g0071051 | 59.091 | 110 | 44 | 1 | 18 | 126 | 95 | 204 | 1.66e-37 | 139 |
| Msa0380540 | MtrunA17_Chr6g0485571 | 62.105 | 95 | 36 | 0 | 21 | 115 | 8 | 102 | 9.39e-37 | 136 |
| Msa0380540 | MtrunA17_Chr3g0135831 | 56.757 | 111 | 43 | 1 | 18 | 123 | 40 | 150 | 1.72e-36 | 136 |
| Msa0380540 | MtrunA17_Chr2g0330821 | 65.957 | 94 | 32 | 0 | 22 | 115 | 77 | 170 | 3.80e-36 | 134 |
| Msa0380540 | MtrunA17_Chr2g0284481 | 61.000 | 100 | 38 | 1 | 17 | 116 | 9 | 107 | 4.66e-36 | 135 |
| Msa0380540 | MtrunA17_Chr4g0047421 | 58.000 | 100 | 38 | 1 | 21 | 116 | 30 | 129 | 1.62e-34 | 126 |
| Msa0380540 | MtrunA17_Chr8g0392001 | 62.766 | 94 | 34 | 1 | 23 | 115 | 21 | 114 | 4.27e-33 | 127 |
| Msa0380540 | MtrunA17_Chr1g0179321 | 66.667 | 60 | 20 | 0 | 24 | 83 | 49 | 108 | 2.63e-22 | 90.9 |
| Msa0380540 | MtrunA17_Chr4g0023771 | 56.923 | 65 | 28 | 0 | 17 | 81 | 8 | 72 | 3.65e-18 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0380540 | AT1G46264.1 | 55.443 | 395 | 104 | 14 | 1 | 371 | 1 | 347 | 2.53e-120 | 352 |
| Msa0380540 | AT4G11660.1 | 49.533 | 214 | 105 | 2 | 16 | 227 | 51 | 263 | 9.73e-60 | 197 |
| Msa0380540 | AT5G62020.1 | 44.726 | 237 | 109 | 4 | 17 | 253 | 16 | 230 | 3.18e-58 | 191 |
| Msa0380540 | AT4G36990.1 | 45.794 | 214 | 89 | 2 | 17 | 230 | 7 | 193 | 6.71e-54 | 179 |
| Msa0380540 | AT1G32330.2 | 43.627 | 204 | 54 | 3 | 21 | 216 | 34 | 184 | 1.27e-45 | 163 |
| Msa0380540 | AT1G32330.1 | 43.627 | 204 | 54 | 3 | 21 | 216 | 34 | 184 | 1.33e-45 | 163 |
| Msa0380540 | AT2G41690.1 | 41.905 | 210 | 89 | 5 | 22 | 228 | 38 | 217 | 4.69e-45 | 155 |
| Msa0380540 | AT4G17750.1 | 70.707 | 99 | 29 | 0 | 20 | 118 | 48 | 146 | 4.89e-45 | 162 |
| Msa0380540 | AT3G22830.1 | 67.000 | 100 | 33 | 0 | 18 | 117 | 55 | 154 | 5.47e-42 | 152 |
| Msa0380540 | AT3G02990.1 | 61.261 | 111 | 39 | 2 | 8 | 115 | 5 | 114 | 2.41e-40 | 149 |
| Msa0380540 | AT5G03720.2 | 67.677 | 99 | 32 | 0 | 24 | 122 | 55 | 153 | 2.94e-40 | 147 |
| Msa0380540 | AT5G03720.1 | 67.677 | 99 | 32 | 0 | 24 | 122 | 55 | 153 | 2.94e-40 | 147 |
| Msa0380540 | AT5G16820.1 | 68.367 | 98 | 30 | 1 | 20 | 117 | 24 | 120 | 1.40e-39 | 147 |
| Msa0380540 | AT5G16820.2 | 68.367 | 98 | 30 | 1 | 20 | 117 | 24 | 120 | 1.40e-39 | 147 |
| Msa0380540 | AT5G43840.1 | 64.356 | 101 | 36 | 0 | 22 | 122 | 17 | 117 | 2.89e-39 | 141 |
| Msa0380540 | AT2G26150.1 | 65.957 | 94 | 32 | 0 | 22 | 115 | 42 | 135 | 1.99e-38 | 140 |
| Msa0380540 | AT2G26150.4 | 65.957 | 94 | 32 | 0 | 22 | 115 | 42 | 135 | 1.99e-38 | 140 |
| Msa0380540 | AT3G24520.1 | 62.245 | 98 | 37 | 0 | 21 | 118 | 14 | 111 | 6.23e-38 | 139 |
| Msa0380540 | AT4G13980.1 | 67.033 | 91 | 30 | 0 | 25 | 115 | 24 | 114 | 1.07e-37 | 141 |
| Msa0380540 | AT3G51910.1 | 61.856 | 97 | 37 | 0 | 18 | 114 | 23 | 119 | 3.04e-37 | 135 |
| Msa0380540 | AT3G63350.1 | 60.825 | 97 | 38 | 0 | 18 | 114 | 22 | 118 | 1.09e-35 | 132 |
| Msa0380540 | AT5G54070.1 | 59.341 | 91 | 37 | 0 | 24 | 114 | 71 | 161 | 5.28e-34 | 129 |
| Msa0380540 | AT4G18880.1 | 64.646 | 99 | 34 | 1 | 17 | 115 | 9 | 106 | 1.78e-31 | 123 |
| Msa0380540 | AT1G67970.1 | 57.732 | 97 | 40 | 1 | 23 | 118 | 18 | 114 | 6.76e-31 | 121 |
| Msa0380540 | AT5G45710.3 | 59.783 | 92 | 37 | 0 | 24 | 115 | 13 | 104 | 2.99e-30 | 119 |
| Msa0380540 | AT5G45710.1 | 59.783 | 92 | 37 | 0 | 24 | 115 | 13 | 104 | 2.99e-30 | 119 |
| Msa0380540 | AT4G18870.1 | 42.553 | 94 | 51 | 1 | 18 | 108 | 137 | 230 | 1.17e-20 | 91.3 |
| Msa0380540 | AT4G18870.1 | 44.186 | 86 | 43 | 3 | 25 | 108 | 14 | 96 | 3.45e-16 | 78.6 |
| Msa0380540 | AT1G77570.1 | 38.636 | 88 | 49 | 3 | 25 | 108 | 27 | 113 | 2.27e-12 | 64.7 |
Find 78 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTTGTTTCCAAACTATT+TGG | 0.202751 | 3_1:+82184358 | None:intergenic |
| AAACAAGGCTCGTTTGGTTT+TGG | 0.245774 | 3_1:-82184341 | Msa0380540:CDS |
| TGAATCATCATCACTGAAAA+TGG | 0.259439 | 3_1:-82185559 | Msa0380540:exon |
| GGATTATTAGATCCACATTC+AGG | 0.261808 | 3_1:+82184379 | None:intergenic |
| TGAAGACGAGTCATATGTTT+AGG | 0.266459 | 3_1:+82184553 | None:intergenic |
| CTAACTCTAGTGTTTGAAAA+TGG | 0.272288 | 3_1:+82184961 | None:intergenic |
| AAGCCAATGAACCAGCTTTC+GGG | 0.281382 | 3_1:-82184592 | Msa0380540:CDS |
| ATCAACAAGTTGGTATGTTT+TGG | 0.282286 | 3_1:+82185461 | None:intergenic |
| CTATTGATGTAGGTGGATTT+TGG | 0.289446 | 3_1:-82184013 | Msa0380540:three_prime_UTR |
| TTAACTTCATCATTTGTTAA+TGG | 0.296353 | 3_1:-82184877 | Msa0380540:CDS |
| GAAGTTGTGCATTTAAAGTT+TGG | 0.305380 | 3_1:+82183959 | None:intergenic |
| TTAACAAATGATGAAGTTAA+TGG | 0.309297 | 3_1:+82184880 | None:intergenic |
| ATGAGAATCCTAAGCTAGTT+AGG | 0.314254 | 3_1:-82184247 | Msa0380540:three_prime_UTR |
| TTGTTGTGTTTGAAGTAGTT+AGG | 0.319993 | 3_1:+82185348 | None:intergenic |
| ATCTAATAATCCAAATAGTT+TGG | 0.322798 | 3_1:-82184368 | Msa0380540:CDS |
| AGGAGGTCTCTAGCAAATTC+TGG | 0.338598 | 3_1:+82185372 | None:intergenic |
| ATGACTCCACCTTCGTTGTT+TGG | 0.343318 | 3_1:-82185401 | Msa0380540:CDS |
| TAGTTGTTTGTTGCTGTTGT+TGG | 0.344004 | 3_1:+82184847 | None:intergenic |
| AAAGCCAATGAACCAGCTTT+CGG | 0.347409 | 3_1:-82184593 | Msa0380540:CDS |
| TGTTGTGTTTGAAGTAGTTA+GGG | 0.361431 | 3_1:+82185349 | None:intergenic |
| CACAGATCACATCGTCTCTT+GGG | 0.368339 | 3_1:-82185430 | Msa0380540:CDS |
| GGAAACAAACAAGGCTCGTT+TGG | 0.378669 | 3_1:-82184347 | Msa0380540:CDS |
| GAGCTTCTTGATGTGTTTGT+TGG | 0.386154 | 3_1:+82184490 | None:intergenic |
| GAAGATCATGATGATATTGA+TGG | 0.395870 | 3_1:-82184110 | Msa0380540:three_prime_UTR |
| GAAGACGAGTCATATGTTTA+GGG | 0.405370 | 3_1:+82184554 | None:intergenic |
| TGTTCACAATCTATTGATGT+AGG | 0.418937 | 3_1:-82184023 | Msa0380540:three_prime_UTR |
| TAAGAGTTACTTGGAGCTAC+TGG | 0.420379 | 3_1:+82184691 | None:intergenic |
| ACATTACCACCACCATTCAT+AGG | 0.425778 | 3_1:+82184628 | None:intergenic |
| TAGCCCGAAAGCTGGTTCAT+TGG | 0.429834 | 3_1:+82184589 | None:intergenic |
| CCACAGATCACATCGTCTCT+TGG | 0.431871 | 3_1:-82185431 | Msa0380540:CDS |
| TTGTTCATCAGAGTATTCAT+TGG | 0.454805 | 3_1:+82184927 | None:intergenic |
| CCACCACCATTCATAGGAGT+TGG | 0.459985 | 3_1:+82184634 | None:intergenic |
| CTGATGAACAAGTCAACAAC+TGG | 0.462821 | 3_1:-82184915 | Msa0380540:CDS |
| AGCTCAATAACAATGGTTGA+AGG | 0.469701 | 3_1:-82184472 | Msa0380540:CDS |
| ACATCACAGCCACAACAAAC+AGG | 0.483395 | 3_1:-82185036 | Msa0380540:CDS |
| GATGAAGAGTAAGAGTTACT+TGG | 0.490480 | 3_1:+82184682 | None:intergenic |
| TTAGCAAACTCCCATCTGTC+AGG | 0.497806 | 3_1:+82185114 | None:intergenic |
| GAAAATGGAAAGAAACTTGG+TGG | 0.498648 | 3_1:+82184976 | None:intergenic |
| GATTATTAGATCCACATTCA+GGG | 0.505417 | 3_1:+82184380 | None:intergenic |
| GTGGAACATTGTGATGCTGC+TGG | 0.507886 | 3_1:+82184995 | None:intergenic |
| TGTGTTTGAAGTAGTTAGGG+AGG | 0.509850 | 3_1:+82185352 | None:intergenic |
| TCATCAGAGTATTCATTGGA+TGG | 0.511281 | 3_1:+82184931 | None:intergenic |
| GAAAGATTGTACCTGACAGA+TGG | 0.519136 | 3_1:-82185125 | Msa0380540:CDS |
| GTTTGAAGTAGTTAGGGAGG+AGG | 0.523740 | 3_1:+82185355 | None:intergenic |
| TCAAATCCAACTCCTATGAA+TGG | 0.530340 | 3_1:-82184640 | Msa0380540:CDS |
| ATTGTGAACAAAGATAATAT+TGG | 0.533410 | 3_1:+82184036 | None:intergenic |
| AATTGTAATAGCCCGAAAGC+TGG | 0.534218 | 3_1:+82184581 | None:intergenic |
| TCACAATCTATTGATGTAGG+TGG | 0.540956 | 3_1:-82184020 | Msa0380540:three_prime_UTR |
| TTTGAAAATGGAAAGAAACT+TGG | 0.548152 | 3_1:+82184973 | None:intergenic |
| TGGTGGTGGTAATGTTTCAA+TGG | 0.548976 | 3_1:-82184620 | Msa0380540:CDS |
| ACTTCATCATTTGTTAATGG+AGG | 0.552014 | 3_1:-82184874 | Msa0380540:CDS |
| CCACAAAATCAATCCCATCA+TGG | 0.552202 | 3_1:-82184529 | Msa0380540:CDS |
| AGTTCACATTCATACCATGA+TGG | 0.552494 | 3_1:+82184515 | None:intergenic |
| ATGTTGATTCCTGTTTGTTG+TGG | 0.553850 | 3_1:+82185027 | None:intergenic |
| AAAAGAGTGCACCCTGAATG+TGG | 0.555827 | 3_1:-82184391 | Msa0380540:CDS |
| TTCAATAACACACACAACAC+TGG | 0.558866 | 3_1:+82185578 | None:intergenic |
| ACAAATGATGAAGTTAATGG+TGG | 0.561209 | 3_1:+82184883 | None:intergenic |
| ACACTGGTTTAGAGAGGGAG+AGG | 0.565479 | 3_1:+82185594 | None:intergenic |
| GTTCACATTCATACCATGAT+GGG | 0.572426 | 3_1:+82184516 | None:intergenic |
| CCAACTCCTATGAATGGTGG+TGG | 0.572594 | 3_1:-82184634 | Msa0380540:CDS |
| AAAGATTGTACCTGACAGAT+GGG | 0.574158 | 3_1:-82185124 | Msa0380540:CDS |
| GCTCAATAACAATGGTTGAA+GGG | 0.590591 | 3_1:-82184471 | Msa0380540:CDS |
| GGAGTTGGATTTGAAGCTTG+TGG | 0.599678 | 3_1:+82184649 | None:intergenic |
| AAAACTAACTAACAAGTGGA+AGG | 0.604739 | 3_1:+82184277 | None:intergenic |
| TGGTTGGATCATCAACAAGT+TGG | 0.622309 | 3_1:+82185451 | None:intergenic |
| CACACAACACTGGTTTAGAG+AGG | 0.626575 | 3_1:+82185588 | None:intergenic |
| ACAGATCACATCGTCTCTTG+GGG | 0.629510 | 3_1:-82185429 | Msa0380540:CDS |
| ATCAAGAAGCTCAATAACAA+TGG | 0.631659 | 3_1:-82184479 | Msa0380540:CDS |
| GAGACGATGTGATCTGTGGT+TGG | 0.633776 | 3_1:+82185435 | None:intergenic |
| AAATAGTTTGGAAACAAACA+AGG | 0.638741 | 3_1:-82184356 | Msa0380540:CDS |
| AGGACGCCAAACAACGAAGG+TGG | 0.642419 | 3_1:+82185395 | None:intergenic |
| ACACAACACTGGTTTAGAGA+GGG | 0.651513 | 3_1:+82185589 | None:intergenic |
| AATCCAACTCCTATGAATGG+TGG | 0.654630 | 3_1:-82184637 | Msa0380540:CDS |
| ACTAACTAACAAGTGGAAGG+AGG | 0.655564 | 3_1:+82184280 | None:intergenic |
| CTTCTACTAGACAACTGTGA+AGG | 0.669455 | 3_1:-82185534 | Msa0380540:CDS |
| AGGTCTCTAGCAAATTCTGG+AGG | 0.693279 | 3_1:+82185375 | None:intergenic |
| TGGAGGACGCCAAACAACGA+AGG | 0.695849 | 3_1:+82185392 | None:intergenic |
| CCAAGAGACGATGTGATCTG+TGG | 0.707530 | 3_1:+82185431 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTCTTTGTTTTTT+AGG | - | chr3_1:82184451-82184470 | Msa0380540:CDS | 10.0% |
| !!! | TATTTTTTCTTTGTTTTTTA+GGG | - | chr3_1:82184452-82184471 | Msa0380540:CDS | 10.0% |
| !!! | TTATTTTTTCTTTGTTTTTT+AGG | - | chr3_1:82184451-82184470 | Msa0380540:CDS | 10.0% |
| !!! | TATTTTTTCTTTGTTTTTTA+GGG | - | chr3_1:82184452-82184471 | Msa0380540:CDS | 10.0% |
| !! | GCTAATGAATATTTCAAAAA+AGG | - | chr3_1:82184509-82184528 | Msa0380540:CDS | 20.0% |
| !! | TTAACAAATGATGAAGTTAA+TGG | + | chr3_1:82184728-82184747 | None:intergenic | 20.0% |
| !!! | TTAACTTCATCATTTGTTAA+TGG | - | chr3_1:82184728-82184747 | Msa0380540:CDS | 20.0% |
| !! | ATCTAATAATCCAAATAGTT+TGG | - | chr3_1:82185237-82185256 | Msa0380540:intron | 20.0% |
| !!! | AAAAGATCATGATTTTGATT+TGG | - | chr3_1:82185288-82185307 | Msa0380540:intron | 20.0% |
| !!! | AAAGATCATGATTTTGATTT+GGG | - | chr3_1:82185289-82185308 | Msa0380540:intron | 20.0% |
| !! | ATTGTGAACAAAGATAATAT+TGG | + | chr3_1:82185572-82185591 | None:intergenic | 20.0% |
| !! | GCTAATGAATATTTCAAAAA+AGG | - | chr3_1:82184509-82184528 | Msa0380540:CDS | 20.0% |
| !! | TTAACAAATGATGAAGTTAA+TGG | + | chr3_1:82184728-82184747 | None:intergenic | 20.0% |
| !!! | TTAACTTCATCATTTGTTAA+TGG | - | chr3_1:82184728-82184747 | Msa0380540:CDS | 20.0% |
| !! | ATCTAATAATCCAAATAGTT+TGG | - | chr3_1:82185237-82185256 | Msa0380540:intron | 20.0% |
| !!! | AAAAGATCATGATTTTGATT+TGG | - | chr3_1:82185288-82185307 | Msa0380540:intron | 20.0% |
| !!! | AAAGATCATGATTTTGATTT+GGG | - | chr3_1:82185289-82185308 | Msa0380540:intron | 20.0% |
| !! | ATTGTGAACAAAGATAATAT+TGG | + | chr3_1:82185572-82185591 | None:intergenic | 20.0% |
| ! | TTTGAAAATGGAAAGAAACT+TGG | + | chr3_1:82184635-82184654 | None:intergenic | 25.0% |
| ! | TTGTTTGTTTCCAAACTATT+TGG | + | chr3_1:82185250-82185269 | None:intergenic | 25.0% |
| ! | AAATAGTTTGGAAACAAACA+AGG | - | chr3_1:82185249-82185268 | Msa0380540:intron | 25.0% |
| ! | AAGAAAAACTAACTAACAAG+TGG | + | chr3_1:82185335-82185354 | None:intergenic | 25.0% |
| !! | AAAAAAAACCTAACTAGCTT+AGG | + | chr3_1:82185369-82185388 | None:intergenic | 25.0% |
| ! | TTTGAAAATGGAAAGAAACT+TGG | + | chr3_1:82184635-82184654 | None:intergenic | 25.0% |
| ! | TTGTTTGTTTCCAAACTATT+TGG | + | chr3_1:82185250-82185269 | None:intergenic | 25.0% |
| ! | AAATAGTTTGGAAACAAACA+AGG | - | chr3_1:82185249-82185268 | Msa0380540:intron | 25.0% |
| ! | AAGAAAAACTAACTAACAAG+TGG | + | chr3_1:82185335-82185354 | None:intergenic | 25.0% |
| !! | AAAAAAAACCTAACTAGCTT+AGG | + | chr3_1:82185369-82185388 | None:intergenic | 25.0% |
| TGAATCATCATCACTGAAAA+TGG | - | chr3_1:82184046-82184065 | Msa0380540:three_prime_UTR | 30.0% | |
| !!! | ATCAACAAGTTGGTATGTTT+TGG | + | chr3_1:82184147-82184166 | None:intergenic | 30.0% |
| ! | TGTTGTGTTTGAAGTAGTTA+GGG | + | chr3_1:82184259-82184278 | None:intergenic | 30.0% |
| ! | TTGTTGTGTTTGAAGTAGTT+AGG | + | chr3_1:82184260-82184279 | None:intergenic | 30.0% |
| CTAACTCTAGTGTTTGAAAA+TGG | + | chr3_1:82184647-82184666 | None:intergenic | 30.0% | |
| ! | TTGTTCATCAGAGTATTCAT+TGG | + | chr3_1:82184681-82184700 | None:intergenic | 30.0% |
| ACAAATGATGAAGTTAATGG+TGG | + | chr3_1:82184725-82184744 | None:intergenic | 30.0% | |
| ! | ACTTCATCATTTGTTAATGG+AGG | - | chr3_1:82184731-82184750 | Msa0380540:CDS | 30.0% |
| ATCAAGAAGCTCAATAACAA+TGG | - | chr3_1:82185126-82185145 | Msa0380540:CDS | 30.0% | |
| GATTATTAGATCCACATTCA+GGG | + | chr3_1:82185228-82185247 | None:intergenic | 30.0% | |
| AAAACTAACTAACAAGTGGA+AGG | + | chr3_1:82185331-82185350 | None:intergenic | 30.0% | |
| !!! | GATTATCAAGTTTTGAGTCA+CGG | - | chr3_1:82185463-82185482 | Msa0380540:CDS | 30.0% |
| GAAGATCATGATGATATTGA+TGG | - | chr3_1:82185495-82185514 | Msa0380540:CDS | 30.0% | |
| TGTTCACAATCTATTGATGT+AGG | - | chr3_1:82185582-82185601 | Msa0380540:five_prime_UTR | 30.0% | |
| TGAATCATCATCACTGAAAA+TGG | - | chr3_1:82184046-82184065 | Msa0380540:three_prime_UTR | 30.0% | |
| !!! | ATCAACAAGTTGGTATGTTT+TGG | + | chr3_1:82184147-82184166 | None:intergenic | 30.0% |
| ! | TGTTGTGTTTGAAGTAGTTA+GGG | + | chr3_1:82184259-82184278 | None:intergenic | 30.0% |
| ! | TTGTTGTGTTTGAAGTAGTT+AGG | + | chr3_1:82184260-82184279 | None:intergenic | 30.0% |
| CTAACTCTAGTGTTTGAAAA+TGG | + | chr3_1:82184647-82184666 | None:intergenic | 30.0% | |
| ! | TTGTTCATCAGAGTATTCAT+TGG | + | chr3_1:82184681-82184700 | None:intergenic | 30.0% |
| ACAAATGATGAAGTTAATGG+TGG | + | chr3_1:82184725-82184744 | None:intergenic | 30.0% | |
| ! | ACTTCATCATTTGTTAATGG+AGG | - | chr3_1:82184731-82184750 | Msa0380540:CDS | 30.0% |
| ATCAAGAAGCTCAATAACAA+TGG | - | chr3_1:82185126-82185145 | Msa0380540:CDS | 30.0% | |
| GATTATTAGATCCACATTCA+GGG | + | chr3_1:82185228-82185247 | None:intergenic | 30.0% | |
| AAAACTAACTAACAAGTGGA+AGG | + | chr3_1:82185331-82185350 | None:intergenic | 30.0% | |
| !!! | GATTATCAAGTTTTGAGTCA+CGG | - | chr3_1:82185463-82185482 | Msa0380540:CDS | 30.0% |
| GAAGATCATGATGATATTGA+TGG | - | chr3_1:82185495-82185514 | Msa0380540:CDS | 30.0% | |
| TGTTCACAATCTATTGATGT+AGG | - | chr3_1:82185582-82185601 | Msa0380540:five_prime_UTR | 30.0% | |
| TTCAATAACACACACAACAC+TGG | + | chr3_1:82184030-82184049 | None:intergenic | 35.0% | |
| GAAGAGATGATTGCTTACAT+AGG | + | chr3_1:82184312-82184331 | None:intergenic | 35.0% | |
| AAAGATTGTACCTGACAGAT+GGG | - | chr3_1:82184481-82184500 | Msa0380540:CDS | 35.0% | |
| !! | ATGTTGATTCCTGTTTGTTG+TGG | + | chr3_1:82184581-82184600 | None:intergenic | 35.0% |
| GAAAATGGAAAGAAACTTGG+TGG | + | chr3_1:82184632-82184651 | None:intergenic | 35.0% | |
| ! | TCATCAGAGTATTCATTGGA+TGG | + | chr3_1:82184677-82184696 | None:intergenic | 35.0% |
| ! | TAGTTGTTTGTTGCTGTTGT+TGG | + | chr3_1:82184761-82184780 | None:intergenic | 35.0% |
| GATGAAGAGTAAGAGTTACT+TGG | + | chr3_1:82184926-82184945 | None:intergenic | 35.0% | |
| TCAAATCCAACTCCTATGAA+TGG | - | chr3_1:82184965-82184984 | Msa0380540:CDS | 35.0% | |
| GAAGACGAGTCATATGTTTA+GGG | + | chr3_1:82185054-82185073 | None:intergenic | 35.0% | |
| TGAAGACGAGTCATATGTTT+AGG | + | chr3_1:82185055-82185074 | None:intergenic | 35.0% | |
| GTTCACATTCATACCATGAT+GGG | + | chr3_1:82185092-82185111 | None:intergenic | 35.0% | |
| AGTTCACATTCATACCATGA+TGG | + | chr3_1:82185093-82185112 | None:intergenic | 35.0% | |
| AGCTCAATAACAATGGTTGA+AGG | - | chr3_1:82185133-82185152 | Msa0380540:CDS | 35.0% | |
| GCTCAATAACAATGGTTGAA+GGG | - | chr3_1:82185134-82185153 | Msa0380540:CDS | 35.0% | |
| GGATTATTAGATCCACATTC+AGG | + | chr3_1:82185229-82185248 | None:intergenic | 35.0% | |
| ATGAGAATCCTAAGCTAGTT+AGG | - | chr3_1:82185358-82185377 | Msa0380540:CDS | 35.0% | |
| TCACAATCTATTGATGTAGG+TGG | - | chr3_1:82185585-82185604 | Msa0380540:five_prime_UTR | 35.0% | |
| !! | CTATTGATGTAGGTGGATTT+TGG | - | chr3_1:82185592-82185611 | Msa0380540:five_prime_UTR | 35.0% |
| TTCAATAACACACACAACAC+TGG | + | chr3_1:82184030-82184049 | None:intergenic | 35.0% | |
| GAAGAGATGATTGCTTACAT+AGG | + | chr3_1:82184312-82184331 | None:intergenic | 35.0% | |
| AAAGATTGTACCTGACAGAT+GGG | - | chr3_1:82184481-82184500 | Msa0380540:CDS | 35.0% | |
| !! | ATGTTGATTCCTGTTTGTTG+TGG | + | chr3_1:82184581-82184600 | None:intergenic | 35.0% |
| GAAAATGGAAAGAAACTTGG+TGG | + | chr3_1:82184632-82184651 | None:intergenic | 35.0% | |
| ! | TCATCAGAGTATTCATTGGA+TGG | + | chr3_1:82184677-82184696 | None:intergenic | 35.0% |
| ! | TAGTTGTTTGTTGCTGTTGT+TGG | + | chr3_1:82184761-82184780 | None:intergenic | 35.0% |
| GATGAAGAGTAAGAGTTACT+TGG | + | chr3_1:82184926-82184945 | None:intergenic | 35.0% | |
| TCAAATCCAACTCCTATGAA+TGG | - | chr3_1:82184965-82184984 | Msa0380540:CDS | 35.0% | |
| GAAGACGAGTCATATGTTTA+GGG | + | chr3_1:82185054-82185073 | None:intergenic | 35.0% | |
| TGAAGACGAGTCATATGTTT+AGG | + | chr3_1:82185055-82185074 | None:intergenic | 35.0% | |
| GTTCACATTCATACCATGAT+GGG | + | chr3_1:82185092-82185111 | None:intergenic | 35.0% | |
| AGTTCACATTCATACCATGA+TGG | + | chr3_1:82185093-82185112 | None:intergenic | 35.0% | |
| AGCTCAATAACAATGGTTGA+AGG | - | chr3_1:82185133-82185152 | Msa0380540:CDS | 35.0% | |
| GCTCAATAACAATGGTTGAA+GGG | - | chr3_1:82185134-82185153 | Msa0380540:CDS | 35.0% | |
| GGATTATTAGATCCACATTC+AGG | + | chr3_1:82185229-82185248 | None:intergenic | 35.0% | |
| ATGAGAATCCTAAGCTAGTT+AGG | - | chr3_1:82185358-82185377 | Msa0380540:CDS | 35.0% | |
| TCACAATCTATTGATGTAGG+TGG | - | chr3_1:82185585-82185604 | Msa0380540:five_prime_UTR | 35.0% | |
| !! | CTATTGATGTAGGTGGATTT+TGG | - | chr3_1:82185592-82185611 | Msa0380540:five_prime_UTR | 35.0% |
| !! | ACACAACACTGGTTTAGAGA+GGG | + | chr3_1:82184019-82184038 | None:intergenic | 40.0% |
| CTTCTACTAGACAACTGTGA+AGG | - | chr3_1:82184071-82184090 | Msa0380540:three_prime_UTR | 40.0% | |
| !!! | TGGTATGTTTTGGTGAGGAA+TGG | + | chr3_1:82184137-82184156 | None:intergenic | 40.0% |
| !!! | CAAGTTGGTATGTTTTGGTG+AGG | + | chr3_1:82184142-82184161 | None:intergenic | 40.0% |
| TGGTTGGATCATCAACAAGT+TGG | + | chr3_1:82184157-82184176 | None:intergenic | 40.0% | |
| ! | TGTGTTTGAAGTAGTTAGGG+AGG | + | chr3_1:82184256-82184275 | None:intergenic | 40.0% |
| GAAAGATTGTACCTGACAGA+TGG | - | chr3_1:82184480-82184499 | Msa0380540:CDS | 40.0% | |
| CTGATGAACAAGTCAACAAC+TGG | - | chr3_1:82184690-82184709 | Msa0380540:CDS | 40.0% | |
| TAAGAGTTACTTGGAGCTAC+TGG | + | chr3_1:82184917-82184936 | None:intergenic | 40.0% | |
| AATCCAACTCCTATGAATGG+TGG | - | chr3_1:82184968-82184987 | Msa0380540:CDS | 40.0% | |
| ACATTACCACCACCATTCAT+AGG | + | chr3_1:82184980-82184999 | None:intergenic | 40.0% | |
| !! | TGGTGGTGGTAATGTTTCAA+TGG | - | chr3_1:82184985-82185004 | Msa0380540:CDS | 40.0% |
| AAAGCCAATGAACCAGCTTT+CGG | - | chr3_1:82185012-82185031 | Msa0380540:CDS | 40.0% | |
| AATTGTAATAGCCCGAAAGC+TGG | + | chr3_1:82185027-82185046 | None:intergenic | 40.0% | |
| !! | CCATGATGGGATTGATTTTG+TGG | + | chr3_1:82185079-82185098 | None:intergenic | 40.0% |
| CCACAAAATCAATCCCATCA+TGG | - | chr3_1:82185076-82185095 | Msa0380540:CDS | 40.0% | |
| GAGCTTCTTGATGTGTTTGT+TGG | + | chr3_1:82185118-82185137 | None:intergenic | 40.0% | |
| ! | TGCAGCAAGACTAAGCTTTT+TGG | - | chr3_1:82185172-82185191 | Msa0380540:intron | 40.0% |
| !! | AAACAAGGCTCGTTTGGTTT+TGG | - | chr3_1:82185264-82185283 | Msa0380540:intron | 40.0% |
| ACTAACTAACAAGTGGAAGG+AGG | + | chr3_1:82185328-82185347 | None:intergenic | 40.0% | |
| !!! | TATCAAGTTTTGAGTCACGG+AGG | - | chr3_1:82185466-82185485 | Msa0380540:CDS | 40.0% |
| !! | ACACAACACTGGTTTAGAGA+GGG | + | chr3_1:82184019-82184038 | None:intergenic | 40.0% |
| CTTCTACTAGACAACTGTGA+AGG | - | chr3_1:82184071-82184090 | Msa0380540:three_prime_UTR | 40.0% | |
| !!! | TGGTATGTTTTGGTGAGGAA+TGG | + | chr3_1:82184137-82184156 | None:intergenic | 40.0% |
| !!! | CAAGTTGGTATGTTTTGGTG+AGG | + | chr3_1:82184142-82184161 | None:intergenic | 40.0% |
| TGGTTGGATCATCAACAAGT+TGG | + | chr3_1:82184157-82184176 | None:intergenic | 40.0% | |
| ! | TGTGTTTGAAGTAGTTAGGG+AGG | + | chr3_1:82184256-82184275 | None:intergenic | 40.0% |
| GAAAGATTGTACCTGACAGA+TGG | - | chr3_1:82184480-82184499 | Msa0380540:CDS | 40.0% | |
| CTGATGAACAAGTCAACAAC+TGG | - | chr3_1:82184690-82184709 | Msa0380540:CDS | 40.0% | |
| TAAGAGTTACTTGGAGCTAC+TGG | + | chr3_1:82184917-82184936 | None:intergenic | 40.0% | |
| AATCCAACTCCTATGAATGG+TGG | - | chr3_1:82184968-82184987 | Msa0380540:CDS | 40.0% | |
| ACATTACCACCACCATTCAT+AGG | + | chr3_1:82184980-82184999 | None:intergenic | 40.0% | |
| !! | TGGTGGTGGTAATGTTTCAA+TGG | - | chr3_1:82184985-82185004 | Msa0380540:CDS | 40.0% |
| AAAGCCAATGAACCAGCTTT+CGG | - | chr3_1:82185012-82185031 | Msa0380540:CDS | 40.0% | |
| AATTGTAATAGCCCGAAAGC+TGG | + | chr3_1:82185027-82185046 | None:intergenic | 40.0% | |
| !! | CCATGATGGGATTGATTTTG+TGG | + | chr3_1:82185079-82185098 | None:intergenic | 40.0% |
| CCACAAAATCAATCCCATCA+TGG | - | chr3_1:82185076-82185095 | Msa0380540:CDS | 40.0% | |
| GAGCTTCTTGATGTGTTTGT+TGG | + | chr3_1:82185118-82185137 | None:intergenic | 40.0% | |
| ! | TGCAGCAAGACTAAGCTTTT+TGG | - | chr3_1:82185172-82185191 | Msa0380540:intron | 40.0% |
| !! | AAACAAGGCTCGTTTGGTTT+TGG | - | chr3_1:82185264-82185283 | Msa0380540:intron | 40.0% |
| ACTAACTAACAAGTGGAAGG+AGG | + | chr3_1:82185328-82185347 | None:intergenic | 40.0% | |
| !!! | TATCAAGTTTTGAGTCACGG+AGG | - | chr3_1:82185466-82185485 | Msa0380540:CDS | 40.0% |
| !! | CACACAACACTGGTTTAGAG+AGG | + | chr3_1:82184020-82184039 | None:intergenic | 45.0% |
| ! | TTTTGGTGAGGAATGGAGCT+GGG | + | chr3_1:82184130-82184149 | None:intergenic | 45.0% |
| CACAGATCACATCGTCTCTT+GGG | - | chr3_1:82184175-82184194 | Msa0380540:three_prime_UTR | 45.0% | |
| ACAGATCACATCGTCTCTTG+GGG | - | chr3_1:82184176-82184195 | Msa0380540:three_prime_UTR | 45.0% | |
| ATGACTCCACCTTCGTTGTT+TGG | - | chr3_1:82184204-82184223 | Msa0380540:three_prime_UTR | 45.0% | |
| AGGTCTCTAGCAAATTCTGG+AGG | + | chr3_1:82184233-82184252 | None:intergenic | 45.0% | |
| AGGAGGTCTCTAGCAAATTC+TGG | + | chr3_1:82184236-82184255 | None:intergenic | 45.0% | |
| ! | GTTTGAAGTAGTTAGGGAGG+AGG | + | chr3_1:82184253-82184272 | None:intergenic | 45.0% |
| TAACGAATCGAAGCGACAAG+AGG | + | chr3_1:82184381-82184400 | None:intergenic | 45.0% | |
| TTAGCAAACTCCCATCTGTC+AGG | + | chr3_1:82184494-82184513 | None:intergenic | 45.0% | |
| ACATCACAGCCACAACAAAC+AGG | - | chr3_1:82184569-82184588 | Msa0380540:CDS | 45.0% | |
| ! | GGAGTTGGATTTGAAGCTTG+TGG | + | chr3_1:82184959-82184978 | None:intergenic | 45.0% |
| AAGCCAATGAACCAGCTTTC+GGG | - | chr3_1:82185013-82185032 | Msa0380540:CDS | 45.0% | |
| ! | TTCAGGGTGCACTCTTTTCT+TGG | + | chr3_1:82185212-82185231 | None:intergenic | 45.0% |
| ! | AAAAGAGTGCACCCTGAATG+TGG | - | chr3_1:82185214-82185233 | Msa0380540:intron | 45.0% |
| GGAAACAAACAAGGCTCGTT+TGG | - | chr3_1:82185258-82185277 | Msa0380540:intron | 45.0% | |
| !! | CACACAACACTGGTTTAGAG+AGG | + | chr3_1:82184020-82184039 | None:intergenic | 45.0% |
| ! | TTTTGGTGAGGAATGGAGCT+GGG | + | chr3_1:82184130-82184149 | None:intergenic | 45.0% |
| CACAGATCACATCGTCTCTT+GGG | - | chr3_1:82184175-82184194 | Msa0380540:three_prime_UTR | 45.0% | |
| ACAGATCACATCGTCTCTTG+GGG | - | chr3_1:82184176-82184195 | Msa0380540:three_prime_UTR | 45.0% | |
| ATGACTCCACCTTCGTTGTT+TGG | - | chr3_1:82184204-82184223 | Msa0380540:three_prime_UTR | 45.0% | |
| AGGTCTCTAGCAAATTCTGG+AGG | + | chr3_1:82184233-82184252 | None:intergenic | 45.0% | |
| AGGAGGTCTCTAGCAAATTC+TGG | + | chr3_1:82184236-82184255 | None:intergenic | 45.0% | |
| ! | GTTTGAAGTAGTTAGGGAGG+AGG | + | chr3_1:82184253-82184272 | None:intergenic | 45.0% |
| TAACGAATCGAAGCGACAAG+AGG | + | chr3_1:82184381-82184400 | None:intergenic | 45.0% | |
| TTAGCAAACTCCCATCTGTC+AGG | + | chr3_1:82184494-82184513 | None:intergenic | 45.0% | |
| ACATCACAGCCACAACAAAC+AGG | - | chr3_1:82184569-82184588 | Msa0380540:CDS | 45.0% | |
| ! | GGAGTTGGATTTGAAGCTTG+TGG | + | chr3_1:82184959-82184978 | None:intergenic | 45.0% |
| AAGCCAATGAACCAGCTTTC+GGG | - | chr3_1:82185013-82185032 | Msa0380540:CDS | 45.0% | |
| ! | TTCAGGGTGCACTCTTTTCT+TGG | + | chr3_1:82185212-82185231 | None:intergenic | 45.0% |
| ! | AAAAGAGTGCACCCTGAATG+TGG | - | chr3_1:82185214-82185233 | Msa0380540:intron | 45.0% |
| GGAAACAAACAAGGCTCGTT+TGG | - | chr3_1:82185258-82185277 | Msa0380540:intron | 45.0% | |
| !! | ACACTGGTTTAGAGAGGGAG+AGG | + | chr3_1:82184014-82184033 | None:intergenic | 50.0% |
| !! | GTTTTGGTGAGGAATGGAGC+TGG | + | chr3_1:82184131-82184150 | None:intergenic | 50.0% |
| GAGACGATGTGATCTGTGGT+TGG | + | chr3_1:82184173-82184192 | None:intergenic | 50.0% | |
| CCAAGAGACGATGTGATCTG+TGG | + | chr3_1:82184177-82184196 | None:intergenic | 50.0% | |
| CCACAGATCACATCGTCTCT+TGG | - | chr3_1:82184174-82184193 | Msa0380540:three_prime_UTR | 50.0% | |
| GTGGAACATTGTGATGCTGC+TGG | + | chr3_1:82184613-82184632 | None:intergenic | 50.0% | |
| CCACCACCATTCATAGGAGT+TGG | + | chr3_1:82184974-82184993 | None:intergenic | 50.0% | |
| CCAACTCCTATGAATGGTGG+TGG | - | chr3_1:82184971-82184990 | Msa0380540:CDS | 50.0% | |
| ! | TAGCCCGAAAGCTGGTTCAT+TGG | + | chr3_1:82185019-82185038 | None:intergenic | 50.0% |
| !! | TTTTGAGTCACGGAGGAGCT+AGG | - | chr3_1:82185473-82185492 | Msa0380540:CDS | 50.0% |
| !! | ACACTGGTTTAGAGAGGGAG+AGG | + | chr3_1:82184014-82184033 | None:intergenic | 50.0% |
| !! | GTTTTGGTGAGGAATGGAGC+TGG | + | chr3_1:82184131-82184150 | None:intergenic | 50.0% |
| GAGACGATGTGATCTGTGGT+TGG | + | chr3_1:82184173-82184192 | None:intergenic | 50.0% | |
| CCAAGAGACGATGTGATCTG+TGG | + | chr3_1:82184177-82184196 | None:intergenic | 50.0% | |
| CCACAGATCACATCGTCTCT+TGG | - | chr3_1:82184174-82184193 | Msa0380540:three_prime_UTR | 50.0% | |
| GTGGAACATTGTGATGCTGC+TGG | + | chr3_1:82184613-82184632 | None:intergenic | 50.0% | |
| CCACCACCATTCATAGGAGT+TGG | + | chr3_1:82184974-82184993 | None:intergenic | 50.0% | |
| CCAACTCCTATGAATGGTGG+TGG | - | chr3_1:82184971-82184990 | Msa0380540:CDS | 50.0% | |
| ! | TAGCCCGAAAGCTGGTTCAT+TGG | + | chr3_1:82185019-82185038 | None:intergenic | 50.0% |
| !! | TTTTGAGTCACGGAGGAGCT+AGG | - | chr3_1:82185473-82185492 | Msa0380540:CDS | 50.0% |
| AGGACGCCAAACAACGAAGG+TGG | + | chr3_1:82184213-82184232 | None:intergenic | 55.0% | |
| TGGAGGACGCCAAACAACGA+AGG | + | chr3_1:82184216-82184235 | None:intergenic | 55.0% | |
| AGGACGCCAAACAACGAAGG+TGG | + | chr3_1:82184213-82184232 | None:intergenic | 55.0% | |
| TGGAGGACGCCAAACAACGA+AGG | + | chr3_1:82184216-82184235 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 82183965 | 82185662 | 82183965 | ID=Msa0380540;Name=Msa0380540 |
| chr3_1 | mRNA | 82183965 | 82185662 | 82183965 | ID=Msa0380540-mRNA-1;Parent=Msa0380540;Name=Msa0380540-mRNA-1;_AED=0.05;_eAED=0.05;_QI=100|1|1|1|1|1|2|320|372 |
| chr3_1 | exon | 82183965 | 82185154 | 82183965 | ID=Msa0380540-mRNA-1:exon:20949;Parent=Msa0380540-mRNA-1 |
| chr3_1 | exon | 82185314 | 82185662 | 82185314 | ID=Msa0380540-mRNA-1:exon:20948;Parent=Msa0380540-mRNA-1 |
| chr3_1 | five_prime_UTR | 82185563 | 82185662 | 82185563 | ID=Msa0380540-mRNA-1:five_prime_utr;Parent=Msa0380540-mRNA-1 |
| chr3_1 | CDS | 82185314 | 82185562 | 82185314 | ID=Msa0380540-mRNA-1:cds;Parent=Msa0380540-mRNA-1 |
| chr3_1 | CDS | 82184285 | 82185154 | 82184285 | ID=Msa0380540-mRNA-1:cds;Parent=Msa0380540-mRNA-1 |
| chr3_1 | three_prime_UTR | 82183965 | 82184284 | 82183965 | ID=Msa0380540-mRNA-1:three_prime_utr;Parent=Msa0380540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
