AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0700500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0700500 MtrunA17_Chr8g0377891 90.660 1167 102 3 1 1162 1 1165 0.0 2088
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0700500 AT3G23740.1 33.528 343 181 9 847 1163 240 561 2.57e-37 149

Find 273 sgRNAs with CRISPR-Local

Find 421 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGCTGAAATTTCTGAATT+AGG 0.116328 4_4:-71556400 Msa0700500:CDS
TCTTGGAAAGATGGCAATTT+TGG 0.194696 4_4:+71554294 None:intergenic
GGCAACTACTTCCAGGTATT+TGG 0.200105 4_4:+71551522 None:intergenic
AGTGCTTTCCTGAGTGTTTC+TGG 0.202412 4_4:+71555118 None:intergenic
GATCGGGAAGTAGCTGAATT+AGG 0.204752 4_4:-71556469 Msa0700500:CDS
TGCAAATTCGAATCTGAAAT+TGG 0.207326 4_4:+71553184 None:intergenic
TTATTTCTCTTATCGGCTTT+GGG 0.216846 4_4:+71555080 None:intergenic
TTGGGAAGATTCTTAAAATA+TGG 0.218302 4_4:+71554679 None:intergenic
CAACTATCAGTCTTAGTTTC+AGG 0.229353 4_4:+71555527 None:intergenic
CGACAACATCCAGGTGTTTC+AGG 0.234770 4_4:+71552860 None:intergenic
ATCCAAAAGCTTCTGAAGTT+TGG 0.240513 4_4:+71553222 None:intergenic
CTTCTGAATGGCCTAGTTAA+TGG 0.242037 4_4:-71553724 Msa0700500:CDS
CAGCTGAAATTTCTGAATTA+GGG 0.242152 4_4:-71556399 Msa0700500:CDS
GTTACATCGTTTCCACAAAA+AGG 0.243243 4_4:+71556694 None:intergenic
CCCCAAACTTCAGAAGCTTT+TGG 0.244143 4_4:-71553224 Msa0700500:CDS
TCTTCAGCATCTAACATATT+AGG 0.253871 4_4:+71553910 None:intergenic
ATCAGCTTCCCGTGCAAATA+TGG 0.256177 4_4:+71554739 None:intergenic
TGTCAACGACACTCCTCTTT+TGG 0.257812 4_4:-71552582 Msa0700500:CDS
ATTATTTCTCTTATCGGCTT+TGG 0.268455 4_4:+71555079 None:intergenic
GCTCCGTCGGTTCTGGAAAA+TGG 0.277936 4_4:-71556439 Msa0700500:CDS
GTGGTTACCATAGTCATCTT+TGG 0.286223 4_4:+71554660 None:intergenic
GCTTTACCAGTCACACCTTT+AGG 0.295581 4_4:-71552953 Msa0700500:CDS
TCCAAAAGCTTCTGAAGTTT+GGG 0.296710 4_4:+71553223 None:intergenic
GAGTGGATTATTTCTCTTAT+CGG 0.300341 4_4:+71555073 None:intergenic
CGTTCCGTTTGCGGGAATTT+CGG 0.308084 4_4:+71556899 None:intergenic
AAAGCTCTATGAACAGAAAT+TGG 0.320315 4_4:+71552971 None:intergenic
TCCGAACAGAAATTGTTTCT+AGG 0.321079 4_4:-71551575 Msa0700500:three_prime_UTR
CAAGCTGTCAGATGAAGATT+TGG 0.331421 4_4:-71556269 Msa0700500:CDS
ATCAAATTGTATTGGCAATT+CGG 0.336675 4_4:+71554266 None:intergenic
TTATCTTGTAGTTGAGATCT+TGG 0.337870 4_4:+71553043 None:intergenic
TTGATCTGTGACTTTCATTT+CGG 0.339926 4_4:+71552829 None:intergenic
CAAAGCCCTCTGCATCCTCT+TGG 0.342184 4_4:+71552758 None:intergenic
GTCAAATAGACCCTACTATC+TGG 0.350858 4_4:-71553011 Msa0700500:CDS
CAATCATTTGAATCACTTCC+AGG 0.354354 4_4:+71553154 None:intergenic
GAAATTTCTGAATTAGGGTT+TGG 0.356119 4_4:-71556394 Msa0700500:CDS
AGATCGGACGTTCCGTTTGC+GGG 0.360952 4_4:+71556891 None:intergenic
CAAAACACCAAGCTGCTCTA+AGG 0.362872 4_4:+71555250 None:intergenic
GGTGATAGTACAGGAAATTC+TGG 0.363890 4_4:-71553121 Msa0700500:CDS
AAAAGGAAGCAATAACAAAA+AGG 0.364259 4_4:-71553686 Msa0700500:CDS
CGAATTTATTCCCCACTTGC+CGG 0.365212 4_4:-71556505 Msa0700500:CDS
TCTGAGGTATGCCCTGCATT+TGG 0.372011 4_4:+71555162 None:intergenic
TCATGACAATGACCCAATTT+CGG 0.374046 4_4:+71555620 None:intergenic
TCATGAAGACAAGAAGGTTA+TGG 0.374927 4_4:-71555603 Msa0700500:CDS
ATTCAATTACAAAAGGCTAA+TGG 0.376627 4_4:-71555903 Msa0700500:CDS
AGCAAACATAAAACGAAAAG+TGG 0.377281 4_4:+71551429 None:intergenic
CAAGAAGGTTATGGGAGGTC+AGG 0.382245 4_4:-71555594 Msa0700500:CDS
ATCGGGAAGTAGCTGAATTA+GGG 0.382557 4_4:-71556468 Msa0700500:CDS
TCTTGAAACGGAACTTGAAC+CGG 0.382730 4_4:+71556745 None:intergenic
TTCCGAATCTGAAAGTCCTT+TGG 0.386134 4_4:+71556672 None:intergenic
TCCTCCTAGTCTAAATCAAT+TGG 0.391970 4_4:-71553935 Msa0700500:CDS
TTCAGATCGTGTTGAGGAAA+AGG 0.395076 4_4:-71551652 Msa0700500:CDS
AAAGGAGTTCTCCAGATAGT+AGG 0.395976 4_4:+71553000 None:intergenic
ACTTGAACCGGAACTGAGTA+TGG 0.396740 4_4:+71556757 None:intergenic
CAAAGTTGACTTGAATACTT+TGG 0.397446 4_4:-71554367 Msa0700500:CDS
TATCTTGTAGTTGAGATCTT+GGG 0.399426 4_4:+71553044 None:intergenic
GAGTGGATCAAAGGTGGATC+TGG 0.402257 4_4:-71555393 Msa0700500:CDS
CATGAAGACAAGAAGGTTAT+GGG 0.402943 4_4:-71555602 Msa0700500:CDS
AATGTGGATGAGGCGGGTGG+TGG 0.404361 4_4:+71556868 None:intergenic
ATACTTCCTTCATAAGGTCT+TGG 0.405275 4_4:+71552645 None:intergenic
TGGTTACCATAGTCATCTTT+GGG 0.408641 4_4:+71554661 None:intergenic
TACAGGTACATCTGGTGATC+AGG 0.410151 4_4:-71554508 Msa0700500:intron
CCTACATAGATGACATCATT+AGG 0.410798 4_4:+71556220 None:intergenic
AAAGCCCTCTGCATCCTCTT+GGG 0.411441 4_4:+71552759 None:intergenic
CGAAGATGACGATCTTGTTA+AGG 0.411660 4_4:-71556599 Msa0700500:CDS
TTAAGCAAGATTCTTTCAAC+AGG 0.411745 4_4:-71555316 Msa0700500:CDS
AAGAAAGCAGTTTGTGGGTC+TGG 0.413277 4_4:-71553983 Msa0700500:CDS
TTTATAGGTATACCGAAATT+GGG 0.413347 4_4:-71555632 Msa0700500:intron
CAAAAGGCTAATGGATGCTA+TGG 0.417412 4_4:-71555894 Msa0700500:CDS
CAAACAACATGTTTCTGAGA+TGG 0.417734 4_4:+71552621 None:intergenic
CTCCTATAGTTGACTGAACC+AGG 0.418077 4_4:+71554709 None:intergenic
ACACTCGCCATTCACTTTCT+CGG 0.420231 4_4:+71555448 None:intergenic
TGTTTCAGATGCTTTCCTGC+AGG 0.422230 4_4:+71551841 None:intergenic
ACTTGAAACGGAACTTGAAC+CGG 0.426123 4_4:+71556801 None:intergenic
TACTTCCTTCATAAGGTCTT+GGG 0.428201 4_4:+71552646 None:intergenic
GATGCTATGGGAGATAATTT+CGG 0.429372 4_4:-71555881 Msa0700500:intron
CACCGGTGTAGTATTGGATT+CGG 0.431433 4_4:+71553633 None:intergenic
ACAATTTGATGCAAAAGAAA+TGG 0.432271 4_4:-71554253 Msa0700500:CDS
AATCTTCCCAAAGATGACTA+TGG 0.436351 4_4:-71554667 Msa0700500:intron
CCACCATGTGTTGCAGTGTC+TGG 0.438116 4_4:+71553763 None:intergenic
TTTGCTGCGGGAACTTGAAA+CGG 0.438266 4_4:+71556789 None:intergenic
GTGTTTCTGGTCAGATCCAT+AGG 0.440055 4_4:+71555131 None:intergenic
TGTTAAGATCATCATTCATC+TGG 0.443214 4_4:+71551792 None:intergenic
ATTTCAGTATCACGAGTCAT+TGG 0.444093 4_4:+71555212 None:intergenic
TTCAAATGATTGTGATCCTA+TGG 0.444913 4_4:-71553143 Msa0700500:CDS
GATGAAAGAAAGCAGTTTGT+GGG 0.445583 4_4:-71553988 Msa0700500:CDS
TTCTAGGAGTGGAACACATC+AGG 0.445762 4_4:-71551559 Msa0700500:three_prime_UTR
TGATACCAATGGGCCAGAAC+TGG 0.447913 4_4:-71555495 Msa0700500:CDS
TCGAATTTGCAAGTAACTCC+TGG 0.448544 4_4:-71553172 Msa0700500:CDS
TCCTAGAAACAATTTCTGTT+CGG 0.452318 4_4:+71551574 None:intergenic
GAATCAACCATACTCAGTTC+CGG 0.453096 4_4:-71556764 Msa0700500:CDS
CCGGCGCCGGCGATTCTGAT+CGG 0.453266 4_4:-71556486 Msa0700500:CDS
AAGGTCTTGGGCAACCTCTT+CGG 0.453280 4_4:+71552658 None:intergenic
ATTGGTGAAGATGCCAGTTC+TGG 0.453428 4_4:+71555482 None:intergenic
GGTTCTCACCGGTGTAGTAT+TGG 0.455125 4_4:+71553627 None:intergenic
TATTCCCCACTTGCCGGCGC+CGG 0.457589 4_4:-71556499 Msa0700500:CDS
CGGCGCCGGCGATTCTGATC+GGG 0.457703 4_4:-71556485 Msa0700500:CDS
TCGCCTCGCACGGAGGTCCT+TGG 0.459092 4_4:+71556525 None:intergenic
TTGGCAATTCGGAGGAGTCT+TGG 0.461511 4_4:+71554277 None:intergenic
GTGACAACTTGATCAGCTAT+AGG 0.464581 4_4:+71552929 None:intergenic
TTTGAGATGGCAAAGGAAGT+TGG 0.468342 4_4:+71554442 None:intergenic
CAAATGCTCTTTCTGCATGA+AGG 0.468866 4_4:+71552708 None:intergenic
GAGATCGGACGTTCCGTTTG+CGG 0.472640 4_4:+71556890 None:intergenic
CTTAACAAGATCGTCATCTT+CGG 0.472983 4_4:+71556600 None:intergenic
AGTACCAGGCAACTACTTCC+AGG 0.473034 4_4:+71551515 None:intergenic
CAGGTTCATTCAATTACAAA+AGG 0.473778 4_4:-71555910 Msa0700500:CDS
CCGATCAGAATCGCCGGCGC+CGG 0.477749 4_4:+71556486 None:intergenic
TTTCTGGGTGCTAGAGATGT+TGG 0.478007 4_4:-71555362 Msa0700500:CDS
TTGAAATTGTTCAAAGCCCC+AGG 0.478616 4_4:-71555929 Msa0700500:CDS
TTCTCGGTATCTACTTGCAT+TGG 0.479236 4_4:+71555464 None:intergenic
ATGAGGCGGGTGGTGGAGAT+CGG 0.479682 4_4:+71556875 None:intergenic
ACCTCAGAATGTCAAACCTA+TGG 0.482063 4_4:-71555147 Msa0700500:CDS
AAAGCTCACCGTACCCGCTC+CGG 0.482065 4_4:-71556835 Msa0700500:CDS
AAACAACATGTTTCTGAGAT+GGG 0.482178 4_4:+71552622 None:intergenic
CCTAATGATGTCATCTATGT+AGG 0.488989 4_4:-71556220 Msa0700500:CDS
TTCGGATGATAGATAATGTA+AGG 0.491626 4_4:+71551592 None:intergenic
GGTTATGGGAGGTCAGGGAT+TGG 0.491650 4_4:-71555588 Msa0700500:CDS
AATCTTATCACACACCATTA+CGG 0.491836 4_4:+71554128 None:intergenic
GATGGGATACTTCCTTCATA+AGG 0.492449 4_4:+71552639 None:intergenic
CTTACATGTTTGCTCTTGAG+TGG 0.497544 4_4:+71555056 None:intergenic
AAGCTGTCAGATGAAGATTT+GGG 0.498032 4_4:-71556268 Msa0700500:CDS
CGGGTGAATGTGGATGAGGC+GGG 0.499168 4_4:+71556862 None:intergenic
AACCAAAGGACTTTCAGATT+CGG 0.499438 4_4:-71556674 Msa0700500:CDS
AACAGGAACGGGAACGGAAG+AGG 0.499995 4_4:+71556717 None:intergenic
CGATCTGAAAACTTAACACT+TGG 0.500039 4_4:+71551666 None:intergenic
TTCTCCACGTTGGACAAGGC+AGG 0.502829 4_4:+71552887 None:intergenic
TCGGAGGAGTCTTGGAAAGA+TGG 0.504525 4_4:+71554285 None:intergenic
TGATGAAAGAAAGCAGTTTG+TGG 0.504775 4_4:-71553989 Msa0700500:CDS
CTGAAAATTCAAGCGAGGGC+CGG 0.506924 4_4:-71556114 Msa0700500:CDS
TGATCAGCTATAGGACCTAA+AGG 0.507484 4_4:+71552938 None:intergenic
CCATGAGATGACATATTAGC+AGG 0.510296 4_4:+71554324 None:intergenic
TTGACATCTGATAATCATGA+AGG 0.512397 4_4:-71555557 Msa0700500:CDS
CTTGGTGTTAGTTCCCGAAA+AGG 0.512977 4_4:-71552797 Msa0700500:CDS
ACCTGACTTTCATCCAAAAG+AGG 0.513118 4_4:+71552569 None:intergenic
CGCTCCGGTCAGATCCGGTC+CGG 0.514035 4_4:-71556820 Msa0700500:CDS
CAAATCTTCATCTGACAGCT+TGG 0.516191 4_4:+71556270 None:intergenic
GGTTCAAAGATGCCTTCAAA+AGG 0.517017 4_4:-71553703 Msa0700500:CDS
TTCAGGTGAAAGAAGCCTGC+AGG 0.518152 4_4:-71551856 Msa0700500:intron
ACTAGATTCTTCATTTGAGA+TGG 0.520142 4_4:+71553825 None:intergenic
AATCGCCGGCGCCGGCAAGT+GGG 0.521074 4_4:+71556494 None:intergenic
CCCCTGGTTCAGTCAACTAT+AGG 0.521818 4_4:-71554711 Msa0700500:CDS
TCGCCATCAATTGCTGAAAA+CGG 0.522563 4_4:-71556370 Msa0700500:CDS
GCACCATGGGTGATACCAAT+GGG 0.525467 4_4:-71555505 Msa0700500:CDS
ACAGAAATTGTTTCTAGGAG+TGG 0.525781 4_4:-71551570 Msa0700500:three_prime_UTR
GAATCGCCGGCGCCGGCAAG+TGG 0.526594 4_4:+71556493 None:intergenic
GCAGCAGAGCAGAGCAGCCA+TGG 0.529136 4_4:-71556929 Msa0700500:exon
CCTCGCACGGAGGTCCTTGG+TGG 0.530427 4_4:+71556528 None:intergenic
GACTGATCCTTGTTCCGTAA+TGG 0.533682 4_4:-71554142 Msa0700500:CDS
CATCATTCAAGCAATGAGAA+AGG 0.534669 4_4:-71554027 Msa0700500:CDS
TCCATAGGTTTGACATTCTG+AGG 0.534755 4_4:+71555146 None:intergenic
GAAGTTTCTTCACTTTGAGA+TGG 0.535481 4_4:+71554429 None:intergenic
GAAGAGGGTTCCTCTTGAAA+CGG 0.536043 4_4:+71556733 None:intergenic
CTGAAACACCTGGATGTTGT+CGG 0.536845 4_4:-71552859 Msa0700500:CDS
TTCATAAACCATATTTGCAC+GGG 0.537606 4_4:-71554747 Msa0700500:CDS
GTACCCGCTCCGGTCAGATC+CGG 0.538113 4_4:-71556825 Msa0700500:CDS
GGGAATAAATTCGCCTCGCA+CGG 0.538413 4_4:+71556515 None:intergenic
TGGCCCATTGGTATCACCCA+TGG 0.538471 4_4:+71555502 None:intergenic
GGACCGGATCTGACCGGAGC+GGG 0.538597 4_4:+71556822 None:intergenic
AAGGAGTTCTCCAGATAGTA+GGG 0.540773 4_4:+71553001 None:intergenic
CCTGCTAATATGTCATCTCA+TGG 0.541971 4_4:-71554324 Msa0700500:CDS
GGATCTGACCGGAGCGGGTA+CGG 0.543526 4_4:+71556827 None:intergenic
AGCTTTGCTGCGGGTGAATG+TGG 0.543562 4_4:+71556852 None:intergenic
TGTGATGATATTGTGCTCAA+TGG 0.546109 4_4:-71555188 Msa0700500:CDS
TGATCCGAAATTCCCGCAAA+CGG 0.547137 4_4:-71556903 Msa0700500:CDS
ACAGGAACGGGAACGGAAGA+GGG 0.547351 4_4:+71556718 None:intergenic
GCGGGTGAATGTGGATGAGG+CGG 0.548554 4_4:+71556861 None:intergenic
GATCCTATGGGTGATAGTAC+AGG 0.549573 4_4:-71553130 Msa0700500:CDS
TGTGATAAGATTGTCACAAA+TGG 0.552424 4_4:-71554117 Msa0700500:CDS
AGTTGTCACTAGAGAAGAAG+TGG 0.553740 4_4:-71552915 Msa0700500:CDS
ACAGATCAACTTGATGCCCT+TGG 0.556087 4_4:-71552815 Msa0700500:CDS
TGATTTCTCCACGTTGGACA+AGG 0.558569 4_4:+71552883 None:intergenic
ATAGGACCTAAAGGTGTGAC+TGG 0.561769 4_4:+71552947 None:intergenic
GTAGATACCGAGAAAGTGAA+TGG 0.562398 4_4:-71555455 Msa0700500:CDS
GGAATTTCGGATCACGTCCA+TGG 0.563873 4_4:+71556912 None:intergenic
GGTTCTAAATCGCTGCCCAC+GGG 0.564160 4_4:-71553459 Msa0700500:CDS
GCATCTTTGAACCATTAACT+AGG 0.564566 4_4:+71553713 None:intergenic
GTGTTTATCTGTGCCATCTG+TGG 0.564797 4_4:-71555429 Msa0700500:CDS
TGCACCATGGGTGATACCAA+TGG 0.565398 4_4:-71555506 Msa0700500:CDS
GACAAGCTCCGACAACATCC+AGG 0.565824 4_4:+71552851 None:intergenic
TTGATCCTCGCATCATCCAC+AGG 0.565826 4_4:+71556340 None:intergenic
GCTCAATGGAGACCAAATGC+AGG 0.566097 4_4:-71555174 Msa0700500:CDS
AAGAAGGTTATGGGAGGTCA+GGG 0.566531 4_4:-71555593 Msa0700500:CDS
AAAAGGAACAGGAACGGGAA+CGG 0.566531 4_4:+71556711 None:intergenic
ATGATGCTCAAATGAAAGGT+TGG 0.567253 4_4:+71554044 None:intergenic
TACTTCCCGATCAGAATCGC+CGG 0.567923 4_4:+71556480 None:intergenic
TCCTACTGCTAGAAAGTACC+AGG 0.568219 4_4:+71551501 None:intergenic
TTGAATGATGCTCAAATGAA+AGG 0.568241 4_4:+71554040 None:intergenic
GTTCATAAACCATATTTGCA+CGG 0.569319 4_4:-71554748 Msa0700500:CDS
AGGTTCTAAATCGCTGCCCA+CGG 0.570248 4_4:-71553460 Msa0700500:CDS
CGATGTGAGGAATGTGGAAG+AGG 0.571374 4_4:-71556182 Msa0700500:CDS
CTTATCTGCACCCTCTGTTG+AGG 0.573087 4_4:-71554220 Msa0700500:CDS
GATAAGATTGTCACAAATGG+TGG 0.573529 4_4:-71554114 Msa0700500:CDS
AGATGCCAGTTCTGGCCCAT+TGG 0.574730 4_4:+71555490 None:intergenic
GGCTGCGCCTTAGAGCAGCT+TGG 0.575336 4_4:-71555257 Msa0700500:CDS
GGATCCAATTGATTTAGACT+AGG 0.575655 4_4:+71553931 None:intergenic
GGAAAATGGCAGTGTGAGGA+CGG 0.575753 4_4:-71556425 Msa0700500:CDS
AAGACTGATAGTTGCACCAT+GGG 0.576264 4_4:-71555518 Msa0700500:CDS
TATTTCTCTTATCGGCTTTG+GGG 0.576654 4_4:+71555081 None:intergenic
ATCGCCGGCGCCGGCAAGTG+GGG 0.577299 4_4:+71556495 None:intergenic
AACAGAAATTGGTGAAACAA+AGG 0.578081 4_4:+71552982 None:intergenic
GTGAATGTGGATGAGGCGGG+TGG 0.578814 4_4:+71556865 None:intergenic
TTCAGGTGATTTCTCCACGT+TGG 0.579276 4_4:+71552877 None:intergenic
AAACGGAACTTGAACCGGAC+CGG 0.581149 4_4:+71556806 None:intergenic
GGTACGGTGAGCTTTGCTGC+GGG 0.582951 4_4:+71556843 None:intergenic
GGGGCTTTGAACAATTTCAA+AGG 0.583740 4_4:+71555932 None:intergenic
GTTGGTAATGCTTTCGACCA+CGG 0.584626 4_4:-71555344 Msa0700500:CDS
AATACCTGGAAGTAGTTGCC+TGG 0.584643 4_4:-71551519 Msa0700500:three_prime_UTR
TCACACACCATTACGGAACA+AGG 0.589266 4_4:+71554135 None:intergenic
TCCAATTGATTTAGACTAGG+AGG 0.590341 4_4:+71553934 None:intergenic
AAAAGGCTAATGGATGCTAT+GGG 0.591299 4_4:-71555893 Msa0700500:CDS
GAATCTGAAATTGGCAGAAG+TGG 0.592147 4_4:+71553193 None:intergenic
TTTGTAATTGAATGAACCTG+GGG 0.594391 4_4:+71555913 None:intergenic
TGTGGAAACGATGTAACCAA+AGG 0.595525 4_4:-71556688 Msa0700500:CDS
TGAAACAGAACAACTTGCAA+AGG 0.595999 4_4:-71551825 Msa0700500:CDS
TCTTCACTTTGAGATGGCAA+AGG 0.596420 4_4:+71554435 None:intergenic
GGTTCAAGTTCCGTTTCAAG+AGG 0.600363 4_4:-71556743 Msa0700500:CDS
GCTGCGGGTGAATGTGGATG+AGG 0.602043 4_4:+71556858 None:intergenic
GGGAAGCTGATCAAAACCCC+TGG 0.602371 4_4:-71554727 Msa0700500:CDS
TGAACCGGACCGGATCTGAC+CGG 0.603361 4_4:+71556816 None:intergenic
GAATAATCTTGACTGTGCTA+AGG 0.603599 4_4:-71555294 Msa0700500:CDS
CCACCAAGGACCTCCGTGCG+AGG 0.606940 4_4:-71556528 Msa0700500:CDS
GCAAACATAAAACGAAAAGT+GGG 0.607109 4_4:+71551430 None:intergenic
TCAGAGTTAGCCTCAACAGA+GGG 0.608322 4_4:+71554210 None:intergenic
TCATTGTCATGAAGACAAGA+AGG 0.608420 4_4:-71555609 Msa0700500:CDS
CTCAATGGAGACCAAATGCA+GGG 0.614045 4_4:-71555173 Msa0700500:CDS
GACACTGCAACACATGGTGG+TGG 0.614063 4_4:-71553760 Msa0700500:CDS
ATGCTTGAGTGGATCAAAGG+TGG 0.615148 4_4:-71555399 Msa0700500:CDS
AGGTCCTTGGTGGTAGCACA+AGG 0.615884 4_4:+71556538 None:intergenic
TTCTGGAAAATGGCAGTGTG+AGG 0.618228 4_4:-71556429 Msa0700500:CDS
GAGAAATCACCTGAAACACC+TGG 0.619765 4_4:-71552869 Msa0700500:CDS
GCCTGGTACTTTCTAGCAGT+AGG 0.620569 4_4:-71551502 Msa0700500:three_prime_UTR
CTGGTTCAGTCAACTATAGG+AGG 0.621061 4_4:-71554708 Msa0700500:CDS
GGGTACGGTGAGCTTTGCTG+CGG 0.621821 4_4:+71556842 None:intergenic
TGGTACTTTCTAGCAGTAGG+AGG 0.621839 4_4:-71551499 Msa0700500:three_prime_UTR
GGTTGCCCAAGACCTTATGA+AGG 0.622380 4_4:-71552651 Msa0700500:CDS
CCAAAAGCTTCTGAAGTTTG+GGG 0.623691 4_4:+71553224 None:intergenic
GTGGATGATAAATGCTTGAG+TGG 0.624401 4_4:-71555410 Msa0700500:CDS
AGCAGACAAATGACAGTCAG+TGG 0.624773 4_4:-71554402 Msa0700500:CDS
GGATCTGACCAGAAACACTC+AGG 0.625772 4_4:-71555126 Msa0700500:CDS
TAAATGCTTGAGTGGATCAA+AGG 0.628364 4_4:-71555402 Msa0700500:CDS
TCAGCTGCTAGATGCCGAAG+AGG 0.631980 4_4:-71552672 Msa0700500:CDS
GTAGCTGAAAATTCAAGCGA+GGG 0.632081 4_4:-71556118 Msa0700500:CDS
TAGAAGCTAGCTGCGATGTG+AGG 0.635076 4_4:-71556195 Msa0700500:CDS
CTCAGAGTTAGCCTCAACAG+AGG 0.638818 4_4:+71554209 None:intergenic
CCTATAGTTGACTGAACCAG+GGG 0.639145 4_4:+71554711 None:intergenic
TGTAGCTGAAAATTCAAGCG+AGG 0.644391 4_4:-71556119 Msa0700500:CDS
AACAATTTCAAAGGTAAACG+CGG 0.645334 4_4:+71555941 None:intergenic
AAATTGTATTGGCAATTCGG+AGG 0.645373 4_4:+71554269 None:intergenic
TTACCAGACACTGCAACACA+TGG 0.645552 4_4:-71553766 Msa0700500:CDS
TCAAATGATTGTGATCCTAT+GGG 0.646538 4_4:-71553142 Msa0700500:CDS
TTTCCTGTACTATCACCCAT+AGG 0.646734 4_4:+71553127 None:intergenic
TCATGATTATCAGATGTCAA+AGG 0.647040 4_4:+71555560 None:intergenic
AAGCATTTATCATCCACAGA+TGG 0.656457 4_4:+71555416 None:intergenic
AAAACCCAAGAGGATGCAGA+GGG 0.661927 4_4:-71552763 Msa0700500:CDS
AGAGGCGGATTTATATGCAA+AGG 0.665530 4_4:-71554469 Msa0700500:CDS
TCCTATAGTTGACTGAACCA+GGG 0.668929 4_4:+71554710 None:intergenic
GCTAAGGCTGCTGATCACAA+TGG 0.673146 4_4:-71555278 Msa0700500:CDS
TACACCTGCCTTGTCCAACG+TGG 0.673259 4_4:-71552891 Msa0700500:CDS
TAAGACTGATAGTTGCACCA+TGG 0.677561 4_4:-71555519 Msa0700500:CDS
ATACACCTGTGGATGATGCG+AGG 0.679193 4_4:-71556345 Msa0700500:CDS
TTCCGAATCCAATACTACAC+CGG 0.684766 4_4:-71553635 Msa0700500:intron
ATTCCCCTATCAAAATTCAG+AGG 0.686862 4_4:+71556295 None:intergenic
ATAAGATTGTCACAAATGGT+GGG 0.687693 4_4:-71554113 Msa0700500:CDS
GTTGCAGTGTCTGGTAACGC+CGG 0.688445 4_4:+71553772 None:intergenic
AATAAATTCGCCTCGCACGG+AGG 0.688523 4_4:+71556518 None:intergenic
GTTGTCACTAGAGAAGAAGT+GGG 0.694605 4_4:-71552914 Msa0700500:CDS
TCTACCTTGTGCTACCACCA+AGG 0.697929 4_4:-71556542 Msa0700500:CDS
GAAGACAAGAAGGTTATGGG+AGG 0.705451 4_4:-71555599 Msa0700500:CDS
ACATAGATGACATCATTAGG+TGG 0.709990 4_4:+71556223 None:intergenic
CCAGACACTGCAACACATGG+TGG 0.710994 4_4:-71553763 Msa0700500:CDS
TGAAAACGGCGATACACCTG+TGG 0.720243 4_4:-71556356 Msa0700500:CDS
TAGCTGCGATGTGAGGAATG+TGG 0.763594 4_4:-71556188 Msa0700500:CDS
CGGACCGGATCTGACCGGAG+CGG 0.781159 4_4:+71556821 None:intergenic
AATCTTGCTTAACATCACCG+TGG 0.800564 4_4:+71555327 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTTTCATTTTTTTGAT+TGG - chr4_4:71554978-71554997 Msa0700500:intron 10.0%
!!! ATAAGTTTAGTTTTAAAAAA+CGG + chr4_4:71555006-71555025 None:intergenic 10.0%
!!! TTTTTTATTTGAATATTTTC+AGG - chr4_4:71556410-71556429 Msa0700500:CDS 10.0%
!! AAATAAACAAATTGTTTATT+TGG + chr4_4:71556568-71556587 None:intergenic 10.0%
!! TAAAAAAACAAATTTCTATA+AGG + chr4_4:71556831-71556850 None:intergenic 10.0%
!! TGATGAAAATAAAAATTGAA+AGG + chr4_4:71552231-71552250 None:intergenic 15.0%
!! ATTCAATCAATAAATAACAA+AGG + chr4_4:71552569-71552588 None:intergenic 15.0%
!! TTAATATTATATTGCATAAG+TGG + chr4_4:71553660-71553679 None:intergenic 15.0%
!! TATTAGATATTAGTTAGATA+TGG - chr4_4:71553729-71553748 Msa0700500:CDS 15.0%
!! ATTTAAATAACCAAACTTAT+CGG + chr4_4:71555912-71555931 None:intergenic 15.0%
!!! TGATATAAATTTATTTTCTC+AGG - chr4_4:71556057-71556076 Msa0700500:intron 15.0%
!! ATAGTGAAAAATAAATACTA+GGG + chr4_4:71556912-71556931 None:intergenic 15.0%
!! AATAGTGAAAAATAAATACT+AGG + chr4_4:71556913-71556932 None:intergenic 15.0%
!!! ATGAAATTTTGTTAGTTGAT+TGG - chr4_4:71552297-71552316 Msa0700500:intron 20.0%
!! TGCAAACAACTAAATAATAA+AGG + chr4_4:71552449-71552468 None:intergenic 20.0%
!! AATTATATATCATGTAACCT+GGG - chr4_4:71553500-71553519 Msa0700500:intron 20.0%
!!! TTAAGCAAATTTTGTTCTTT+GGG + chr4_4:71554202-71554221 None:intergenic 20.0%
!!! ATTAAGCAAATTTTGTTCTT+TGG + chr4_4:71554203-71554222 None:intergenic 20.0%
!! GATATATACACAAAAGATTA+TGG + chr4_4:71554680-71554699 None:intergenic 20.0%
!!! TTAAGTTTTTAAAACATGCT+GGG - chr4_4:71554847-71554866 Msa0700500:intron 20.0%
!!! AGTATTGGTTTTTATTCTAT+TGG - chr4_4:71554931-71554950 Msa0700500:intron 20.0%
!!! ACTAAACTTATACTACTTTT+AGG - chr4_4:71555015-71555034 Msa0700500:intron 20.0%
!!! TTTTTCTCAAAATTCCTTTT+CGG + chr4_4:71555503-71555522 None:intergenic 20.0%
!! ATAAAATGATCAGAAAAGAA+AGG + chr4_4:71555786-71555805 None:intergenic 20.0%
!! TGAAATGAAATAATAGTGAA+AGG + chr4_4:71555953-71555972 None:intergenic 20.0%
!! GCAAAATATTATAAACTTGT+CGG + chr4_4:71556111-71556130 None:intergenic 20.0%
!! TAATGTAGCATAAAAATAAG+AGG - chr4_4:71556363-71556382 Msa0700500:CDS 20.0%
!! TAAACAAATTGTTTATTTGG+AGG + chr4_4:71556565-71556584 None:intergenic 20.0%
!!! TAACCATTTTTTAATCTGTT+TGG + chr4_4:71556665-71556684 None:intergenic 20.0%
!! TTTTGTAATTGAATGAACCT+GGG + chr4_4:71552374-71552393 None:intergenic 25.0%
! ATTCAATTACAAAAGGCTAA+TGG - chr4_4:71552380-71552399 Msa0700500:intron 25.0%
!! GATATTATTGTACGTGATTT+TGG - chr4_4:71552522-71552541 Msa0700500:intron 25.0%
!! AATTGGCATCGTAATTTTAT+AGG - chr4_4:71552636-71552655 Msa0700500:CDS 25.0%
!! TTTTATAGGTATACCGAAAT+TGG - chr4_4:71552650-71552669 Msa0700500:CDS 25.0%
! TTTATAGGTATACCGAAATT+GGG - chr4_4:71552651-71552670 Msa0700500:CDS 25.0%
! TTGACATTGTATTAGGTATT+AGG + chr4_4:71553340-71553359 None:intergenic 25.0%
! TACCTAATACAATGTCAATT+TGG - chr4_4:71553342-71553361 Msa0700500:intron 25.0%
! AACCAAATTGACATTGTATT+AGG + chr4_4:71553347-71553366 None:intergenic 25.0%
! TGACAATATATGCATATACA+TGG - chr4_4:71553461-71553480 Msa0700500:CDS 25.0%
!!! ATACATGGTTTTGTATTTGT+TGG - chr4_4:71553476-71553495 Msa0700500:intron 25.0%
! CAATTATATATCATGTAACC+TGG - chr4_4:71553499-71553518 Msa0700500:intron 25.0%
! TTGGGAAGATTCTTAAAATA+TGG + chr4_4:71553607-71553626 None:intergenic 25.0%
!! ATCAAATTGTATTGGCAATT+CGG + chr4_4:71554020-71554039 None:intergenic 25.0%
!! TCTTTTGCATCAAATTGTAT+TGG + chr4_4:71554028-71554047 None:intergenic 25.0%
! ACAATTTGATGCAAAAGAAA+TGG - chr4_4:71554030-71554049 Msa0700500:CDS 25.0%
!!! GAAGATTATTTCTGAAAAAC+CGG - chr4_4:71554492-71554511 Msa0700500:CDS 25.0%
! AAAAGGAAGCAATAACAAAA+AGG - chr4_4:71554597-71554616 Msa0700500:intron 25.0%
! TATAATCAATGAGAAAGAGA+GGG + chr4_4:71554734-71554753 None:intergenic 25.0%
! TTATAATCAATGAGAAAGAG+AGG + chr4_4:71554735-71554754 None:intergenic 25.0%
!! TTGATCAAGTAATTTTGAAC+AGG - chr4_4:71554803-71554822 Msa0700500:intron 25.0%
!!! GTTAAGTTTTTAAAACATGC+TGG - chr4_4:71554846-71554865 Msa0700500:intron 25.0%
!! TTCTCATTTTCCAACAAAAT+CGG + chr4_4:71554897-71554916 None:intergenic 25.0%
! GAATAAAAACCAATACTTAC+AGG + chr4_4:71554928-71554947 None:intergenic 25.0%
!! TTTTCTCAAAATTCCTTTTC+GGG + chr4_4:71555502-71555521 None:intergenic 25.0%
!!! CTTGAGGTTTTATTTCTAAA+TGG + chr4_4:71556140-71556159 None:intergenic 25.0%
! ATAAAACCTCAAGTAAATTC+TGG - chr4_4:71556147-71556166 Msa0700500:CDS 25.0%
! AAAAAAATGGCAAAGTTACT+TGG + chr4_4:71556204-71556223 None:intergenic 25.0%
! CTGAATTTATTAAGTTACAC+GGG + chr4_4:71556310-71556329 None:intergenic 25.0%
! GCTGAATTTATTAAGTTACA+CGG + chr4_4:71556311-71556330 None:intergenic 25.0%
!! TATTTGGAGGAACAAATTTT+GGG + chr4_4:71556552-71556571 None:intergenic 25.0%
!! TTATTTGGAGGAACAAATTT+TGG + chr4_4:71556553-71556572 None:intergenic 25.0%
!! TGCTGTATATACTCTTTTTA+CGG - chr4_4:71556873-71556892 Msa0700500:CDS 25.0%
TCAGCTGAAATTTCTGAATT+AGG - chr4_4:71551883-71551902 Msa0700500:intron 30.0%
CAGCTGAAATTTCTGAATTA+GGG - chr4_4:71551884-71551903 Msa0700500:intron 30.0%
GAAATTTCTGAATTAGGGTT+TGG - chr4_4:71551889-71551908 Msa0700500:intron 30.0%
!!! TTTGAACAGAGCTATTTTTC+CGG + chr4_4:71552191-71552210 None:intergenic 30.0%
TTCAAAGGAGTAAATCTGTA+AGG - chr4_4:71552205-71552224 Msa0700500:intron 30.0%
TTTCATCATTGCATATGTGT+TGG - chr4_4:71552243-71552262 Msa0700500:intron 30.0%
AACAATTTCAAAGGTAAACG+CGG + chr4_4:71552345-71552364 None:intergenic 30.0%
TTTGTAATTGAATGAACCTG+GGG + chr4_4:71552373-71552392 None:intergenic 30.0%
! CTTTTGTAATTGAATGAACC+TGG + chr4_4:71552375-71552394 None:intergenic 30.0%
CAGGTTCATTCAATTACAAA+AGG - chr4_4:71552373-71552392 Msa0700500:intron 30.0%
!!! ATTTAGTTTTACATGTGCGA+CGG - chr4_4:71552483-71552502 Msa0700500:intron 30.0%
TCATGATTATCAGATGTCAA+AGG + chr4_4:71552726-71552745 None:intergenic 30.0%
TTGACATCTGATAATCATGA+AGG - chr4_4:71552726-71552745 Msa0700500:CDS 30.0%
TTAAGCAAGATTCTTTCAAC+AGG - chr4_4:71552967-71552986 Msa0700500:CDS 30.0%
!! TTATTTCTCTTATCGGCTTT+GGG + chr4_4:71553206-71553225 None:intergenic 30.0%
!! ATTATTTCTCTTATCGGCTT+TGG + chr4_4:71553207-71553226 None:intergenic 30.0%
!! GAGTGGATTATTTCTCTTAT+CGG + chr4_4:71553213-71553232 None:intergenic 30.0%
!! TATTTGTTTTCTGCCAGTTA+TGG - chr4_4:71553269-71553288 Msa0700500:intron 30.0%
!! ATTTGTTTTCTGCCAGTTAT+GGG - chr4_4:71553270-71553289 Msa0700500:intron 30.0%
TGTTTAAACTTCCACTATAG+TGG - chr4_4:71553403-71553422 Msa0700500:CDS 30.0%
GTTCATAAACCATATTTGCA+CGG - chr4_4:71553535-71553554 Msa0700500:intron 30.0%
TTCATAAACCATATTTGCAC+GGG - chr4_4:71553536-71553555 Msa0700500:intron 30.0%
!! CAAAGTTGACTTGAATACTT+TGG - chr4_4:71553916-71553935 Msa0700500:CDS 30.0%
AATCTTATCACACACCATTA+CGG + chr4_4:71554158-71554177 None:intergenic 30.0%
TGTGATAAGATTGTCACAAA+TGG - chr4_4:71554166-71554185 Msa0700500:CDS 30.0%
ATAAGATTGTCACAAATGGT+GGG - chr4_4:71554170-71554189 Msa0700500:CDS 30.0%
TTGAATGATGCTCAAATGAA+AGG + chr4_4:71554246-71554265 None:intergenic 30.0%
TCTTCAGCATCTAACATATT+AGG + chr4_4:71554376-71554395 None:intergenic 30.0%
ACTAGATTCTTCATTTGAGA+TGG + chr4_4:71554461-71554480 None:intergenic 30.0%
AAAGCAAAAAGTCTTCTGAA+TGG - chr4_4:71554547-71554566 Msa0700500:intron 30.0%
!! TTGTTATTGCTTCCTTTTGA+AGG + chr4_4:71554595-71554614 None:intergenic 30.0%
! TTAAAAGAATGCAGGTCTTT+TGG + chr4_4:71554704-71554723 None:intergenic 30.0%
GGTAAATCTTAAAAGAATGC+AGG + chr4_4:71554712-71554731 None:intergenic 30.0%
ATAATCAATGAGAAAGAGAG+GGG + chr4_4:71554733-71554752 None:intergenic 30.0%
!!! GTTTTAAAAACTTAACCCGT+GGG + chr4_4:71554842-71554861 None:intergenic 30.0%
!!! TGTTTTAAAAACTTAACCCG+TGG + chr4_4:71554843-71554862 None:intergenic 30.0%
AGTCTAATTCCTGTAAGTAT+TGG - chr4_4:71554916-71554935 Msa0700500:intron 30.0%
! TGCAAATTCGAATCTGAAAT+TGG + chr4_4:71555102-71555121 None:intergenic 30.0%
TTCAAATGATTGTGATCCTA+TGG - chr4_4:71555140-71555159 Msa0700500:CDS 30.0%
TCAAATGATTGTGATCCTAT+GGG - chr4_4:71555141-71555160 Msa0700500:CDS 30.0%
TATCTTGTAGTTGAGATCTT+GGG + chr4_4:71555242-71555261 None:intergenic 30.0%
TTATCTTGTAGTTGAGATCT+TGG + chr4_4:71555243-71555262 None:intergenic 30.0%
AACAGAAATTGGTGAAACAA+AGG + chr4_4:71555304-71555323 None:intergenic 30.0%
AAAGCTCTATGAACAGAAAT+TGG + chr4_4:71555315-71555334 None:intergenic 30.0%
TTGATCTGTGACTTTCATTT+CGG + chr4_4:71555457-71555476 None:intergenic 30.0%
!! ATTTTGAGAAAAAACCCAAG+AGG - chr4_4:71555510-71555529 Msa0700500:CDS 30.0%
!! AAACAACATGTTTCTGAGAT+GGG + chr4_4:71555664-71555683 None:intergenic 30.0%
ATAGTCATATCAACATCATG+TGG + chr4_4:71555745-71555764 None:intergenic 30.0%
ATTCTTCACGATAACTGAAA+TGG - chr4_4:71555807-71555826 Msa0700500:intron 30.0%
TTATTATGCAAAGCTTGTGA+TGG - chr4_4:71555862-71555881 Msa0700500:intron 30.0%
ATTATCTCATCCGATAAGTT+TGG - chr4_4:71555899-71555918 Msa0700500:CDS 30.0%
TAATAGTGAAAGGAATTGCA+AGG + chr4_4:71555943-71555962 None:intergenic 30.0%
GGTCAAATGCACTAAAAAAA+TGG + chr4_4:71556217-71556236 None:intergenic 30.0%
TCAAATGAAGCTATCTCATA+AGG + chr4_4:71556238-71556257 None:intergenic 30.0%
! GCATATAAAGACGTTGATAA+TGG + chr4_4:71556333-71556352 None:intergenic 30.0%
TGTTAAGATCATCATTCATC+TGG + chr4_4:71556494-71556513 None:intergenic 30.0%
!! AGGAACAAATTTTGGGAATA+AGG + chr4_4:71556545-71556564 None:intergenic 30.0%
CGACCAAACAGATTAAAAAA+TGG - chr4_4:71556659-71556678 Msa0700500:CDS 30.0%
TTCGGATGATAGATAATGTA+AGG + chr4_4:71556694-71556713 None:intergenic 30.0%
TCCTAGAAACAATTTCTGTT+CGG + chr4_4:71556712-71556731 None:intergenic 30.0%
!!! GTGTTTTAAAACCAAATACC+TGG - chr4_4:71556750-71556769 Msa0700500:CDS 30.0%
GCAAACATAAAACGAAAAGT+GGG + chr4_4:71556856-71556875 None:intergenic 30.0%
AGCAAACATAAAACGAAAAG+TGG + chr4_4:71556857-71556876 None:intergenic 30.0%
!! ATGGTTGATTCTTTTTGCTG+CGG + chr4_4:71551510-71551529 None:intergenic 35.0%
GTTACATCGTTTCCACAAAA+AGG + chr4_4:71551592-71551611 None:intergenic 35.0%
AACCAAAGGACTTTCAGATT+CGG - chr4_4:71551609-71551628 Msa0700500:exon 35.0%
CTTAACAAGATCGTCATCTT+CGG + chr4_4:71551686-71551705 None:intergenic 35.0%
! TCACGTTTTGCTTTCTTGAA+AGG + chr4_4:71551712-71551731 None:intergenic 35.0%
ATTCCCCTATCAAAATTCAG+AGG + chr4_4:71551991-71552010 None:intergenic 35.0%
AAGCTGTCAGATGAAGATTT+GGG - chr4_4:71552015-71552034 Msa0700500:intron 35.0%
ACATAGATGACATCATTAGG+TGG + chr4_4:71552063-71552082 None:intergenic 35.0%
CCTACATAGATGACATCATT+AGG + chr4_4:71552066-71552085 None:intergenic 35.0%
CCTAATGATGTCATCTATGT+AGG - chr4_4:71552063-71552082 Msa0700500:intron 35.0%
! GGAAAAATAGCTCTGTTCAA+AGG - chr4_4:71552190-71552209 Msa0700500:intron 35.0%
! AAAAGGCTAATGGATGCTAT+GGG - chr4_4:71552390-71552409 Msa0700500:intron 35.0%
GATGCTATGGGAGATAATTT+CGG - chr4_4:71552402-71552421 Msa0700500:intron 35.0%
! TTGGTAGTTGTTCTATGTAG+AGG - chr4_4:71552541-71552560 Msa0700500:intron 35.0%
! AATTAGCTTGATATGTGCGA+TGG - chr4_4:71552609-71552628 Msa0700500:CDS 35.0%
ATATGTGCGATGGAACTAAT+TGG - chr4_4:71552619-71552638 Msa0700500:CDS 35.0%
TCATGACAATGACCCAATTT+CGG + chr4_4:71552666-71552685 None:intergenic 35.0%
TCATTGTCATGAAGACAAGA+AGG - chr4_4:71552674-71552693 Msa0700500:CDS 35.0%
TCATGAAGACAAGAAGGTTA+TGG - chr4_4:71552680-71552699 Msa0700500:CDS 35.0%
CATGAAGACAAGAAGGTTAT+GGG - chr4_4:71552681-71552700 Msa0700500:CDS 35.0%
CAACTATCAGTCTTAGTTTC+AGG + chr4_4:71552759-71552778 None:intergenic 35.0%
AAGCATTTATCATCCACAGA+TGG + chr4_4:71552870-71552889 None:intergenic 35.0%
TAAATGCTTGAGTGGATCAA+AGG - chr4_4:71552881-71552900 Msa0700500:CDS 35.0%
GAATAATCTTGACTGTGCTA+AGG - chr4_4:71552989-71553008 Msa0700500:CDS 35.0%
ATTTCAGTATCACGAGTCAT+TGG + chr4_4:71553074-71553093 None:intergenic 35.0%
TGTGATGATATTGTGCTCAA+TGG - chr4_4:71553095-71553114 Msa0700500:CDS 35.0%
!! TATTTCTCTTATCGGCTTTG+GGG + chr4_4:71553205-71553224 None:intergenic 35.0%
CAAAATGTCTAACCCATAAC+TGG + chr4_4:71553285-71553304 None:intergenic 35.0%
AATCTTCCCAAAGATGACTA+TGG - chr4_4:71553616-71553635 Msa0700500:intron 35.0%
TGGTTACCATAGTCATCTTT+GGG + chr4_4:71553625-71553644 None:intergenic 35.0%
ATAAGTGGTTGAAAACATGG+TGG + chr4_4:71553645-71553664 None:intergenic 35.0%
TGCATAAGTGGTTGAAAACA+TGG + chr4_4:71553648-71553667 None:intergenic 35.0%
!!! AAAGTGCTTGCTGATTTTAC+AGG - chr4_4:71553758-71553777 Msa0700500:CDS 35.0%
!! CGCCTCTTCATTTTTATGAT+GGG + chr4_4:71553801-71553820 None:intergenic 35.0%
CCATCATAAAAATGAAGAGG+CGG - chr4_4:71553799-71553818 Msa0700500:CDS 35.0%
! GAAGTTTCTTCACTTTGAGA+TGG + chr4_4:71553857-71553876 None:intergenic 35.0%
! TCTTGGAAAGATGGCAATTT+TGG + chr4_4:71553992-71554011 None:intergenic 35.0%
! AAATTGTATTGGCAATTCGG+AGG + chr4_4:71554017-71554036 None:intergenic 35.0%
GATAAGATTGTCACAAATGG+TGG - chr4_4:71554169-71554188 Msa0700500:CDS 35.0%
ATGATGCTCAAATGAAAGGT+TGG + chr4_4:71554242-71554261 None:intergenic 35.0%
CATCATTCAAGCAATGAGAA+AGG - chr4_4:71554256-71554275 Msa0700500:CDS 35.0%
TGATGAAAGAAAGCAGTTTG+TGG - chr4_4:71554294-71554313 Msa0700500:CDS 35.0%
GATGAAAGAAAGCAGTTTGT+GGG - chr4_4:71554295-71554314 Msa0700500:CDS 35.0%
TCCTCCTAGTCTAAATCAAT+TGG - chr4_4:71554348-71554367 Msa0700500:CDS 35.0%
! TCCAATTGATTTAGACTAGG+AGG + chr4_4:71554352-71554371 None:intergenic 35.0%
! GGATCCAATTGATTTAGACT+AGG + chr4_4:71554355-71554374 None:intergenic 35.0%
!!! CGTCATTTTTGCAAATTGCA+TGG + chr4_4:71554414-71554433 None:intergenic 35.0%
TTGCAAAAATGACGATGTTG+TGG - chr4_4:71554420-71554439 Msa0700500:CDS 35.0%
GCATCTTTGAACCATTAACT+AGG + chr4_4:71554573-71554592 None:intergenic 35.0%
!!! AACAAAAAGGCTAGTTTTGC+TGG - chr4_4:71554610-71554629 Msa0700500:intron 35.0%
TTTGCTGGTGAGATGAAAAA+TGG - chr4_4:71554625-71554644 Msa0700500:intron 35.0%
CAAAAGATTATGGTTCTCAC+CGG + chr4_4:71554670-71554689 None:intergenic 35.0%
! AAGATTGCTTCCGATTTTGT+TGG - chr4_4:71554884-71554903 Msa0700500:intron 35.0%
!! TCCAAAAGCTTCTGAAGTTT+GGG + chr4_4:71555063-71555082 None:intergenic 35.0%
!! ATCCAAAAGCTTCTGAAGTT+TGG + chr4_4:71555064-71555083 None:intergenic 35.0%
CAATCATTTGAATCACTTCC+AGG + chr4_4:71555132-71555151 None:intergenic 35.0%
TACTTCCTTCATAAGGTCTT+GGG + chr4_4:71555640-71555659 None:intergenic 35.0%
ATACTTCCTTCATAAGGTCT+TGG + chr4_4:71555641-71555660 None:intergenic 35.0%
! CAAACAACATGTTTCTGAGA+TGG + chr4_4:71555665-71555684 None:intergenic 35.0%
ACTTGGAATTTCTCACCATA+GGG + chr4_4:71556187-71556206 None:intergenic 35.0%
TACTTGGAATTTCTCACCAT+AGG + chr4_4:71556188-71556207 None:intergenic 35.0%
TGAAACAGAACAACTTGCAA+AGG - chr4_4:71556458-71556477 Msa0700500:CDS 35.0%
CGATCTGAAAACTTAACACT+TGG + chr4_4:71556620-71556639 None:intergenic 35.0%
! TAAGTTTTCAGATCGTGTTG+AGG - chr4_4:71556625-71556644 Msa0700500:CDS 35.0%
! TCCGAACAGAAATTGTTTCT+AGG - chr4_4:71556708-71556727 Msa0700500:CDS 35.0%
!! ACAGAAATTGTTTCTAGGAG+TGG - chr4_4:71556713-71556732 Msa0700500:CDS 35.0%
ACTTGAAACGGAACTTGAAC+CGG + chr4_4:71551485-71551504 None:intergenic 40.0%
!! TGGTTGATTCTTTTTGCTGC+GGG + chr4_4:71551509-71551528 None:intergenic 40.0%
GAATCAACCATACTCAGTTC+CGG - chr4_4:71551519-71551538 Msa0700500:three_prime_UTR 40.0%
TCTTGAAACGGAACTTGAAC+CGG + chr4_4:71551541-71551560 None:intergenic 40.0%
TCCACAAAAAGGAACAGGAA+CGG + chr4_4:71551581-71551600 None:intergenic 40.0%
TCGTTTCCACAAAAAGGAAC+AGG + chr4_4:71551586-71551605 None:intergenic 40.0%
TGTGGAAACGATGTAACCAA+AGG - chr4_4:71551595-71551614 Msa0700500:three_prime_UTR 40.0%
TTCCGAATCTGAAAGTCCTT+TGG + chr4_4:71551614-71551633 None:intergenic 40.0%
CGAAGATGACGATCTTGTTA+AGG - chr4_4:71551684-71551703 Msa0700500:intron 40.0%
ATCGGGAAGTAGCTGAATTA+GGG - chr4_4:71551815-71551834 Msa0700500:CDS 40.0%
!! ATTAGGGTTTTATGCTCCGT+CGG - chr4_4:71551831-71551850 Msa0700500:CDS 40.0%
TCGCCATCAATTGCTGAAAA+CGG - chr4_4:71551913-71551932 Msa0700500:intron 40.0%
!! ACGAGCCTCTGAATTTTGAT+AGG - chr4_4:71551983-71552002 Msa0700500:intron 40.0%
!! CGAGCCTCTGAATTTTGATA+GGG - chr4_4:71551984-71552003 Msa0700500:intron 40.0%
!! GAGCCTCTGAATTTTGATAG+GGG - chr4_4:71551985-71552004 Msa0700500:intron 40.0%
CAAATCTTCATCTGACAGCT+TGG + chr4_4:71552016-71552035 None:intergenic 40.0%
CAAGCTGTCAGATGAAGATT+TGG - chr4_4:71552014-71552033 Msa0700500:intron 40.0%
! TTTTCAGCTACATTAGCAGC+AGG + chr4_4:71552156-71552175 None:intergenic 40.0%
TGTAGCTGAAAATTCAAGCG+AGG - chr4_4:71552164-71552183 Msa0700500:intron 40.0%
GTAGCTGAAAATTCAAGCGA+GGG - chr4_4:71552165-71552184 Msa0700500:intron 40.0%
GTTGATTGGATTCTTGATGC+AGG - chr4_4:71552311-71552330 Msa0700500:intron 40.0%
!! GGGGCTTTGAACAATTTCAA+AGG + chr4_4:71552354-71552373 None:intergenic 40.0%
TTGAAATTGTTCAAAGCCCC+AGG - chr4_4:71552354-71552373 Msa0700500:intron 40.0%
! CAAAAGGCTAATGGATGCTA+TGG - chr4_4:71552389-71552408 Msa0700500:intron 40.0%
TAAGACTGATAGTTGCACCA+TGG - chr4_4:71552764-71552783 Msa0700500:CDS 40.0%
AAGACTGATAGTTGCACCAT+GGG - chr4_4:71552765-71552784 Msa0700500:CDS 40.0%
TTCTCGGTATCTACTTGCAT+TGG + chr4_4:71552822-71552841 None:intergenic 40.0%
GTAGATACCGAGAAAGTGAA+TGG - chr4_4:71552828-71552847 Msa0700500:CDS 40.0%
GTGGATGATAAATGCTTGAG+TGG - chr4_4:71552873-71552892 Msa0700500:CDS 40.0%
AATCTTGCTTAACATCACCG+TGG + chr4_4:71552959-71552978 None:intergenic 40.0%
ACCTCAGAATGTCAAACCTA+TGG - chr4_4:71553136-71553155 Msa0700500:CDS 40.0%
TCCATAGGTTTGACATTCTG+AGG + chr4_4:71553140-71553159 None:intergenic 40.0%
CTTACATGTTTGCTCTTGAG+TGG + chr4_4:71553230-71553249 None:intergenic 40.0%
AATTTGGTTAAACCCTCAGC+TGG - chr4_4:71553358-71553377 Msa0700500:intron 40.0%
ATTTGGTTAAACCCTCAGCT+GGG - chr4_4:71553359-71553378 Msa0700500:intron 40.0%
CCTAAAAAAAACCCAGCTGA+GGG + chr4_4:71553373-71553392 None:intergenic 40.0%
!!! CCTCAGCTGGGTTTTTTTTA+GGG - chr4_4:71553371-71553390 Msa0700500:intron 40.0%
AAGTTCACTAGCCACTATAG+TGG + chr4_4:71553417-71553436 None:intergenic 40.0%
TCCTATAGTTGACTGAACCA+GGG + chr4_4:71553576-71553595 None:intergenic 40.0%
GTGGTTACCATAGTCATCTT+TGG + chr4_4:71553626-71553645 None:intergenic 40.0%
!! GCTGATTTTACAGGTACATC+TGG - chr4_4:71553767-71553786 Msa0700500:CDS 40.0%
GGCCCATCATAAAAATGAAG+AGG - chr4_4:71553796-71553815 Msa0700500:CDS 40.0%
!! CCGCCTCTTCATTTTTATGA+TGG + chr4_4:71553802-71553821 None:intergenic 40.0%
! AGAGGCGGATTTATATGCAA+AGG - chr4_4:71553814-71553833 Msa0700500:CDS 40.0%
! TTTGAGATGGCAAAGGAAGT+TGG + chr4_4:71553844-71553863 None:intergenic 40.0%
!! TCTTCACTTTGAGATGGCAA+AGG + chr4_4:71553851-71553870 None:intergenic 40.0%
CCATGAGATGACATATTAGC+AGG + chr4_4:71553962-71553981 None:intergenic 40.0%
CCTGCTAATATGTCATCTCA+TGG - chr4_4:71553959-71553978 Msa0700500:CDS 40.0%
CTTCTGAATGGCCTAGTTAA+TGG - chr4_4:71554559-71554578 Msa0700500:intron 40.0%
GGTTCAAAGATGCCTTCAAA+AGG - chr4_4:71554580-71554599 Msa0700500:intron 40.0%
TTCCGAATCCAATACTACAC+CGG - chr4_4:71554648-71554667 Msa0700500:intron 40.0%
!! CCAAAAGCTTCTGAAGTTTG+GGG + chr4_4:71555062-71555081 None:intergenic 40.0%
! GAATCTGAAATTGGCAGAAG+TGG + chr4_4:71555093-71555112 None:intergenic 40.0%
TCGAATTTGCAAGTAACTCC+TGG - chr4_4:71555111-71555130 Msa0700500:CDS 40.0%
TTTCCTGTACTATCACCCAT+AGG + chr4_4:71555159-71555178 None:intergenic 40.0%
GGTGATAGTACAGGAAATTC+TGG - chr4_4:71555162-71555181 Msa0700500:CDS 40.0%
GTCAAATAGACCCTACTATC+TGG - chr4_4:71555272-71555291 Msa0700500:CDS 40.0%
AAGGAGTTCTCCAGATAGTA+GGG + chr4_4:71555285-71555304 None:intergenic 40.0%
AAAGGAGTTCTCCAGATAGT+AGG + chr4_4:71555286-71555305 None:intergenic 40.0%
TGATCAGCTATAGGACCTAA+AGG + chr4_4:71555348-71555367 None:intergenic 40.0%
GTGACAACTTGATCAGCTAT+AGG + chr4_4:71555357-71555376 None:intergenic 40.0%
AGTTGTCACTAGAGAAGAAG+TGG - chr4_4:71555368-71555387 Msa0700500:CDS 40.0%
GTTGTCACTAGAGAAGAAGT+GGG - chr4_4:71555369-71555388 Msa0700500:CDS 40.0%
!! TTTTCGGGAACTAACACCAA+GGG + chr4_4:71555487-71555506 None:intergenic 40.0%
CAAATGCTCTTTCTGCATGA+AGG + chr4_4:71555578-71555597 None:intergenic 40.0%
GATGGGATACTTCCTTCATA+AGG + chr4_4:71555647-71555666 None:intergenic 40.0%
! TCCTCTTTTGGATGAAAGTC+AGG - chr4_4:71555713-71555732 Msa0700500:intron 40.0%
ACCTGACTTTCATCCAAAAG+AGG + chr4_4:71555717-71555736 None:intergenic 40.0%
ATAGGGCCAGAATTTACTTG+AGG + chr4_4:71556156-71556175 None:intergenic 40.0%
TTGGAATTTCTCACCATAGG+GGG + chr4_4:71556185-71556204 None:intergenic 40.0%
CTTGGAATTTCTCACCATAG+GGG + chr4_4:71556186-71556205 None:intergenic 40.0%
GGAATAAGGTATGCACATAC+AGG + chr4_4:71556531-71556550 None:intergenic 40.0%
TTCAGATCGTGTTGAGGAAA+AGG - chr4_4:71556631-71556650 Msa0700500:CDS 40.0%
GCAGTAGGAGGAAAAATAGA+TGG - chr4_4:71556796-71556815 Msa0700500:CDS 40.0%
TGATCCGAAATTCCCGCAAA+CGG - chr4_4:71551380-71551399 Msa0700500:three_prime_UTR 45.0%
TTTGCTGCGGGAACTTGAAA+CGG + chr4_4:71551497-71551516 None:intergenic 45.0%
ACTTGAACCGGAACTGAGTA+TGG + chr4_4:71551529-71551548 None:intergenic 45.0%
! GGTTCAAGTTCCGTTTCAAG+AGG - chr4_4:71551484-71551503 Msa0700500:three_prime_UTR 45.0%
GAAGAGGGTTCCTCTTGAAA+CGG + chr4_4:71551553-71551572 None:intergenic 45.0%
AAAAGGAACAGGAACGGGAA+CGG + chr4_4:71551575-71551594 None:intergenic 45.0%
CCACAAAAAGGAACAGGAAC+GGG + chr4_4:71551580-71551599 None:intergenic 45.0%
CGAATTTATTCCCCACTTGC+CGG - chr4_4:71551778-71551797 Msa0700500:CDS 45.0%
GATCGGGAAGTAGCTGAATT+AGG - chr4_4:71551814-71551833 Msa0700500:CDS 45.0%
! TTCTGGAAAATGGCAGTGTG+AGG - chr4_4:71551854-71551873 Msa0700500:CDS 45.0%
!! TCGCCGTTTTCAGCAATTGA+TGG + chr4_4:71551919-71551938 None:intergenic 45.0%
GAAGACAAGAAGGTTATGGG+AGG - chr4_4:71552684-71552703 Msa0700500:CDS 45.0%
AAGAAGGTTATGGGAGGTCA+GGG - chr4_4:71552690-71552709 Msa0700500:CDS 45.0%
ATTGGTGAAGATGCCAGTTC+TGG + chr4_4:71552804-71552823 None:intergenic 45.0%
ACACTCGCCATTCACTTTCT+CGG + chr4_4:71552838-71552857 None:intergenic 45.0%
GTGTTTATCTGTGCCATCTG+TGG - chr4_4:71552854-71552873 Msa0700500:CDS 45.0%
ATGCTTGAGTGGATCAAAGG+TGG - chr4_4:71552884-71552903 Msa0700500:CDS 45.0%
! GATCTGGCTGCAGATTTTCT+GGG - chr4_4:71552906-71552925 Msa0700500:CDS 45.0%
TTTCTGGGTGCTAGAGATGT+TGG - chr4_4:71552921-71552940 Msa0700500:CDS 45.0%
!! GTTGGTAATGCTTTCGACCA+CGG - chr4_4:71552939-71552958 Msa0700500:CDS 45.0%
CAAAACACCAAGCTGCTCTA+AGG + chr4_4:71553036-71553055 None:intergenic 45.0%
CTCAATGGAGACCAAATGCA+GGG - chr4_4:71553110-71553129 Msa0700500:CDS 45.0%
!! GTGTTTCTGGTCAGATCCAT+AGG + chr4_4:71553155-71553174 None:intergenic 45.0%
AGTGCTTTCCTGAGTGTTTC+TGG + chr4_4:71553168-71553187 None:intergenic 45.0%
!!! CCCTCAGCTGGGTTTTTTTT+AGG - chr4_4:71553370-71553389 Msa0700500:intron 45.0%
CCCTAAAAAAAACCCAGCTG+AGG + chr4_4:71553374-71553393 None:intergenic 45.0%
ATCAGCTTCCCGTGCAAATA+TGG + chr4_4:71553547-71553566 None:intergenic 45.0%
CCTATAGTTGACTGAACCAG+GGG + chr4_4:71553575-71553594 None:intergenic 45.0%
CTCCTATAGTTGACTGAACC+AGG + chr4_4:71553577-71553596 None:intergenic 45.0%
CTGGTTCAGTCAACTATAGG+AGG - chr4_4:71553575-71553594 Msa0700500:intron 45.0%
TACAGGTACATCTGGTGATC+AGG - chr4_4:71553775-71553794 Msa0700500:CDS 45.0%
AGCAGACAAATGACAGTCAG+TGG - chr4_4:71553881-71553900 Msa0700500:CDS 45.0%
!! GGAAAGATGGCAATTTTGGC+TGG + chr4_4:71553988-71554007 None:intergenic 45.0%
! TCAGAGTTAGCCTCAACAGA+GGG + chr4_4:71554076-71554095 None:intergenic 45.0%
GACTGATCCTTGTTCCGTAA+TGG - chr4_4:71554141-71554160 Msa0700500:CDS 45.0%
TCACACACCATTACGGAACA+AGG + chr4_4:71554151-71554170 None:intergenic 45.0%
AAGAAAGCAGTTTGTGGGTC+TGG - chr4_4:71554300-71554319 Msa0700500:CDS 45.0%
TTACCAGACACTGCAACACA+TGG - chr4_4:71554517-71554536 Msa0700500:intron 45.0%
! CACCGGTGTAGTATTGGATT+CGG + chr4_4:71554653-71554672 None:intergenic 45.0%
! CCCCAAACTTCAGAAGCTTT+TGG - chr4_4:71555059-71555078 Msa0700500:intron 45.0%
GATCCTATGGGTGATAGTAC+AGG - chr4_4:71555153-71555172 Msa0700500:CDS 45.0%
GCTTTACCAGTCACACCTTT+AGG - chr4_4:71555330-71555349 Msa0700500:CDS 45.0%
! ATAGGACCTAAAGGTGTGAC+TGG + chr4_4:71555339-71555358 None:intergenic 45.0%
TGATTTCTCCACGTTGGACA+AGG + chr4_4:71555403-71555422 None:intergenic 45.0%
TTCAGGTGATTTCTCCACGT+TGG + chr4_4:71555409-71555428 None:intergenic 45.0%
GAGAAATCACCTGAAACACC+TGG - chr4_4:71555414-71555433 Msa0700500:CDS 45.0%
CTGAAACACCTGGATGTTGT+CGG - chr4_4:71555424-71555443 Msa0700500:CDS 45.0%
ACAGATCAACTTGATGCCCT+TGG - chr4_4:71555468-71555487 Msa0700500:CDS 45.0%
!! CTTTTCGGGAACTAACACCA+AGG + chr4_4:71555488-71555507 None:intergenic 45.0%
!! CTTGGTGTTAGTTCCCGAAA+AGG - chr4_4:71555486-71555505 Msa0700500:CDS 45.0%
AAAAACCCAAGAGGATGCAG+AGG - chr4_4:71555519-71555538 Msa0700500:CDS 45.0%
AAAACCCAAGAGGATGCAGA+GGG - chr4_4:71555520-71555539 Msa0700500:CDS 45.0%
! TGTCAACGACACTCCTCTTT+TGG - chr4_4:71555701-71555720 Msa0700500:intron 45.0%
TGGAATTTCTCACCATAGGG+GGG + chr4_4:71556184-71556203 None:intergenic 45.0%
TGTTTCAGATGCTTTCCTGC+AGG + chr4_4:71556445-71556464 None:intergenic 45.0%
! TTCTAGGAGTGGAACACATC+AGG - chr4_4:71556724-71556743 Msa0700500:CDS 45.0%
GGCAACTACTTCCAGGTATT+TGG + chr4_4:71556764-71556783 None:intergenic 45.0%
AATACCTGGAAGTAGTTGCC+TGG - chr4_4:71556764-71556783 Msa0700500:CDS 45.0%
!! TCCTACTGCTAGAAAGTACC+AGG + chr4_4:71556785-71556804 None:intergenic 45.0%
! TGGTACTTTCTAGCAGTAGG+AGG - chr4_4:71556784-71556803 Msa0700500:CDS 45.0%
GGAATTTCGGATCACGTCCA+TGG + chr4_4:71551374-71551393 None:intergenic 50.0%
CGTTCCGTTTGCGGGAATTT+CGG + chr4_4:71551387-71551406 None:intergenic 50.0%
AAACGGAACTTGAACCGGAC+CGG + chr4_4:71551480-71551499 None:intergenic 50.0%
! CCCGTTCCTGTTCCTTTTTG+TGG - chr4_4:71551577-71551596 Msa0700500:three_prime_UTR 50.0%
TCTACCTTGTGCTACCACCA+AGG - chr4_4:71551741-71551760 Msa0700500:intron 50.0%
AATAAATTCGCCTCGCACGG+AGG + chr4_4:71551768-71551787 None:intergenic 50.0%
GGGAATAAATTCGCCTCGCA+CGG + chr4_4:71551771-71551790 None:intergenic 50.0%
TACTTCCCGATCAGAATCGC+CGG + chr4_4:71551806-71551825 None:intergenic 50.0%
!!! GTTTTATGCTCCGTCGGTTC+TGG - chr4_4:71551837-71551856 Msa0700500:CDS 50.0%
!!! CTGCCATTTTCCAGAACCGA+CGG + chr4_4:71551850-71551869 None:intergenic 50.0%
GGAAAATGGCAGTGTGAGGA+CGG - chr4_4:71551858-71551877 Msa0700500:intron 50.0%
TGAAAACGGCGATACACCTG+TGG - chr4_4:71551927-71551946 Msa0700500:intron 50.0%
ATACACCTGTGGATGATGCG+AGG - chr4_4:71551938-71551957 Msa0700500:intron 50.0%
TTGATCCTCGCATCATCCAC+AGG + chr4_4:71551946-71551965 None:intergenic 50.0%
TAGAAGCTAGCTGCGATGTG+AGG - chr4_4:71552088-71552107 Msa0700500:intron 50.0%
TAGCTGCGATGTGAGGAATG+TGG - chr4_4:71552095-71552114 Msa0700500:intron 50.0%
CGATGTGAGGAATGTGGAAG+AGG - chr4_4:71552101-71552120 Msa0700500:intron 50.0%
CTGAAAATTCAAGCGAGGGC+CGG - chr4_4:71552169-71552188 Msa0700500:intron 50.0%
ACATGTGCGACGGAGCTAAT+TGG - chr4_4:71552493-71552512 Msa0700500:intron 50.0%
CGACGGAGCTAATTGGCTAT+TGG - chr4_4:71552500-71552519 Msa0700500:intron 50.0%
CAAGAAGGTTATGGGAGGTC+AGG - chr4_4:71552689-71552708 Msa0700500:CDS 50.0%
TGCACCATGGGTGATACCAA+TGG - chr4_4:71552777-71552796 Msa0700500:CDS 50.0%
GCACCATGGGTGATACCAAT+GGG - chr4_4:71552778-71552797 Msa0700500:CDS 50.0%
TGATACCAATGGGCCAGAAC+TGG - chr4_4:71552788-71552807 Msa0700500:CDS 50.0%
GAGTGGATCAAAGGTGGATC+TGG - chr4_4:71552890-71552909 Msa0700500:CDS 50.0%
! GGATCTGGCTGCAGATTTTC+TGG - chr4_4:71552905-71552924 Msa0700500:CDS 50.0%
GCTAAGGCTGCTGATCACAA+TGG - chr4_4:71553005-71553024 Msa0700500:CDS 50.0%
GCTCAATGGAGACCAAATGC+AGG - chr4_4:71553109-71553128 Msa0700500:CDS 50.0%
! TCTGAGGTATGCCCTGCATT+TGG + chr4_4:71553124-71553143 None:intergenic 50.0%
GGATCTGACCAGAAACACTC+AGG - chr4_4:71553157-71553176 Msa0700500:CDS 50.0%
GTAACCTGGGATGTCTTTGC+AGG - chr4_4:71553513-71553532 Msa0700500:intron 50.0%
TGAACCTGCAAAGACATCCC+AGG + chr4_4:71553520-71553539 None:intergenic 50.0%
CCCCTGGTTCAGTCAACTAT+AGG - chr4_4:71553572-71553591 Msa0700500:intron 50.0%
TCGGAGGAGTCTTGGAAAGA+TGG + chr4_4:71554001-71554020 None:intergenic 50.0%
TTGGCAATTCGGAGGAGTCT+TGG + chr4_4:71554009-71554028 None:intergenic 50.0%
CTTATCTGCACCCTCTGTTG+AGG - chr4_4:71554063-71554082 Msa0700500:CDS 50.0%
! CTCAGAGTTAGCCTCAACAG+AGG + chr4_4:71554077-71554096 None:intergenic 50.0%
GGTTCTCACCGGTGTAGTAT+TGG + chr4_4:71554659-71554678 None:intergenic 50.0%
!! AGGTTCTAAATCGCTGCCCA+CGG - chr4_4:71554823-71554842 Msa0700500:intron 50.0%
CGACAACATCCAGGTGTTTC+AGG + chr4_4:71555426-71555445 None:intergenic 50.0%
AAAGCCCTCTGCATCCTCTT+GGG + chr4_4:71555527-71555546 None:intergenic 50.0%
AAGGTCTTGGGCAACCTCTT+CGG + chr4_4:71555628-71555647 None:intergenic 50.0%
GGTTGCCCAAGACCTTATGA+AGG - chr4_4:71555632-71555651 Msa0700500:intron 50.0%
ACCATAGGGGGGACACTATA+GGG + chr4_4:71556173-71556192 None:intergenic 50.0%
TTCAGGTGAAAGAAGCCTGC+AGG - chr4_4:71556427-71556446 Msa0700500:CDS 50.0%
AGTACCAGGCAACTACTTCC+AGG + chr4_4:71556771-71556790 None:intergenic 50.0%
! GCCTGGTACTTTCTAGCAGT+AGG - chr4_4:71556781-71556800 Msa0700500:CDS 50.0%
AGATCGGACGTTCCGTTTGC+GGG + chr4_4:71551395-71551414 None:intergenic 55.0%
GAGATCGGACGTTCCGTTTG+CGG + chr4_4:71551396-71551415 None:intergenic 55.0%
AGCTTTGCTGCGGGTGAATG+TGG + chr4_4:71551434-71551453 None:intergenic 55.0%
ACAGGAACGGGAACGGAAGA+GGG + chr4_4:71551568-71551587 None:intergenic 55.0%
AACAGGAACGGGAACGGAAG+AGG + chr4_4:71551569-71551588 None:intergenic 55.0%
! AGGTCCTTGGTGGTAGCACA+AGG + chr4_4:71551748-71551767 None:intergenic 55.0%
!! GCTCCGTCGGTTCTGGAAAA+TGG - chr4_4:71551844-71551863 Msa0700500:CDS 55.0%
GGTTATGGGAGGTCAGGGAT+TGG - chr4_4:71552695-71552714 Msa0700500:CDS 55.0%
TGGCCCATTGGTATCACCCA+TGG + chr4_4:71552784-71552803 None:intergenic 55.0%
! AGATGCCAGTTCTGGCCCAT+TGG + chr4_4:71552796-71552815 None:intergenic 55.0%
GGGAAGCTGATCAAAACCCC+TGG - chr4_4:71553556-71553575 Msa0700500:intron 55.0%
! GTTGCAGTGTCTGGTAACGC+CGG + chr4_4:71554514-71554533 None:intergenic 55.0%
CCACCATGTGTTGCAGTGTC+TGG + chr4_4:71554523-71554542 None:intergenic 55.0%
CCAGACACTGCAACACATGG+TGG - chr4_4:71554520-71554539 Msa0700500:intron 55.0%
GACACTGCAACACATGGTGG+TGG - chr4_4:71554523-71554542 Msa0700500:intron 55.0%
!! GGTTCTAAATCGCTGCCCAC+GGG - chr4_4:71554824-71554843 Msa0700500:intron 55.0%
TACACCTGCCTTGTCCAACG+TGG - chr4_4:71555392-71555411 Msa0700500:CDS 55.0%
TTCTCCACGTTGGACAAGGC+AGG + chr4_4:71555399-71555418 None:intergenic 55.0%
GACAAGCTCCGACAACATCC+AGG + chr4_4:71555435-71555454 None:intergenic 55.0%
CAAAGCCCTCTGCATCCTCT+TGG + chr4_4:71555528-71555547 None:intergenic 55.0%
TCAGCTGCTAGATGCCGAAG+AGG - chr4_4:71555611-71555630 Msa0700500:CDS 55.0%
CACCATAGGGGGGACACTAT+AGG + chr4_4:71556174-71556193 None:intergenic 55.0%
!! ATGAGGCGGGTGGTGGAGAT+CGG + chr4_4:71551411-71551430 None:intergenic 60.0%
AATGTGGATGAGGCGGGTGG+TGG + chr4_4:71551418-71551437 None:intergenic 60.0%
GTGAATGTGGATGAGGCGGG+TGG + chr4_4:71551421-71551440 None:intergenic 60.0%
CGGGTGAATGTGGATGAGGC+GGG + chr4_4:71551424-71551443 None:intergenic 60.0%
GCGGGTGAATGTGGATGAGG+CGG + chr4_4:71551425-71551444 None:intergenic 60.0%
GCTGCGGGTGAATGTGGATG+AGG + chr4_4:71551428-71551447 None:intergenic 60.0%
GGTACGGTGAGCTTTGCTGC+GGG + chr4_4:71551443-71551462 None:intergenic 60.0%
GGGTACGGTGAGCTTTGCTG+CGG + chr4_4:71551444-71551463 None:intergenic 60.0%
AAAGCTCACCGTACCCGCTC+CGG - chr4_4:71551448-71551467 Msa0700500:three_prime_UTR 60.0%
TGAACCGGACCGGATCTGAC+CGG + chr4_4:71551470-71551489 None:intergenic 60.0%
GCCCTATAGTGTCCCCCCTA+TGG - chr4_4:71556169-71556188 Msa0700500:CDS 60.0%
GGATCTGACCGGAGCGGGTA+CGG + chr4_4:71551459-71551478 None:intergenic 65.0%
GTACCCGCTCCGGTCAGATC+CGG - chr4_4:71551458-71551477 Msa0700500:three_prime_UTR 65.0%
TATTCCCCACTTGCCGGCGC+CGG - chr4_4:71551784-71551803 Msa0700500:CDS 65.0%
GGCTGCGCCTTAGAGCAGCT+TGG - chr4_4:71553026-71553045 Msa0700500:CDS 65.0%
GGACCGGATCTGACCGGAGC+GGG + chr4_4:71551464-71551483 None:intergenic 70.0%
CGGACCGGATCTGACCGGAG+CGG + chr4_4:71551465-71551484 None:intergenic 70.0%
CGCTCCGGTCAGATCCGGTC+CGG - chr4_4:71551463-71551482 Msa0700500:three_prime_UTR 70.0%
CCTCGCACGGAGGTCCTTGG+TGG + chr4_4:71551758-71551777 None:intergenic 70.0%
CCACCAAGGACCTCCGTGCG+AGG - chr4_4:71551755-71551774 Msa0700500:intron 70.0%
TCGCCTCGCACGGAGGTCCT+TGG + chr4_4:71551761-71551780 None:intergenic 70.0%
!! AATCGCCGGCGCCGGCAAGT+GGG + chr4_4:71551792-71551811 None:intergenic 70.0%
CCGATCAGAATCGCCGGCGC+CGG + chr4_4:71551800-71551819 None:intergenic 70.0%
!! CCGGCGCCGGCGATTCTGAT+CGG - chr4_4:71551797-71551816 Msa0700500:CDS 70.0%
!! CGGCGCCGGCGATTCTGATC+GGG - chr4_4:71551798-71551817 Msa0700500:CDS 70.0%
!! ATCGCCGGCGCCGGCAAGTG+GGG + chr4_4:71551791-71551810 None:intergenic 75.0%
!! GAATCGCCGGCGCCGGCAAG+TGG + chr4_4:71551793-71551812 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 71551356 71556949 71551356 ID=Msa0700500;Name=Msa0700500
chr4_4 mRNA 71551356 71556949 71551356 ID=Msa0700500-mRNA-1;Parent=Msa0700500;Name=Msa0700500-mRNA-1;_AED=0.04;_eAED=0.04;_QI=17|1|1|1|1|1|9|264|1166
chr4_4 exon 71551356 71551700 71551356 ID=Msa0700500-mRNA-1:exon:21797;Parent=Msa0700500-mRNA-1
chr4_4 exon 71551775 71551873 71551775 ID=Msa0700500-mRNA-1:exon:21796;Parent=Msa0700500-mRNA-1
chr4_4 exon 71552571 71553268 71552571 ID=Msa0700500-mRNA-1:exon:21795;Parent=Msa0700500-mRNA-1
chr4_4 exon 71553378 71553480 71553378 ID=Msa0700500-mRNA-1:exon:21794;Parent=Msa0700500-mRNA-1
chr4_4 exon 71553636 71554525 71553636 ID=Msa0700500-mRNA-1:exon:21793;Parent=Msa0700500-mRNA-1
chr4_4 exon 71554668 71554770 71554668 ID=Msa0700500-mRNA-1:exon:21792;Parent=Msa0700500-mRNA-1
chr4_4 exon 71555061 71555647 71555061 ID=Msa0700500-mRNA-1:exon:21791;Parent=Msa0700500-mRNA-1
chr4_4 exon 71555882 71555972 71555882 ID=Msa0700500-mRNA-1:exon:21790;Parent=Msa0700500-mRNA-1
chr4_4 exon 71556084 71556949 71556084 ID=Msa0700500-mRNA-1:exon:21789;Parent=Msa0700500-mRNA-1
chr4_4 five_prime_UTR 71556933 71556949 71556933 ID=Msa0700500-mRNA-1:five_prime_utr;Parent=Msa0700500-mRNA-1
chr4_4 CDS 71556084 71556932 71556084 ID=Msa0700500-mRNA-1:cds;Parent=Msa0700500-mRNA-1
chr4_4 CDS 71555882 71555972 71555882 ID=Msa0700500-mRNA-1:cds;Parent=Msa0700500-mRNA-1
chr4_4 CDS 71555061 71555647 71555061 ID=Msa0700500-mRNA-1:cds;Parent=Msa0700500-mRNA-1
chr4_4 CDS 71554668 71554770 71554668 ID=Msa0700500-mRNA-1:cds;Parent=Msa0700500-mRNA-1
chr4_4 CDS 71553636 71554525 71553636 ID=Msa0700500-mRNA-1:cds;Parent=Msa0700500-mRNA-1
chr4_4 CDS 71553378 71553480 71553378 ID=Msa0700500-mRNA-1:cds;Parent=Msa0700500-mRNA-1
chr4_4 CDS 71552571 71553268 71552571 ID=Msa0700500-mRNA-1:cds;Parent=Msa0700500-mRNA-1
chr4_4 CDS 71551775 71551873 71551775 ID=Msa0700500-mRNA-1:cds;Parent=Msa0700500-mRNA-1
chr4_4 CDS 71551620 71551700 71551620 ID=Msa0700500-mRNA-1:cds;Parent=Msa0700500-mRNA-1
chr4_4 three_prime_UTR 71551356 71551619 71551356 ID=Msa0700500-mRNA-1:three_prime_utr;Parent=Msa0700500-mRNA-1
Gene Sequence

>Msa0700500

ATGGACGTGATCCGAAATTCCCGCAAACGGAACGTCCGATCTCCACCACCCGCCTCATCCACATTCACCCGCAGCAAAGCTCACCGTACCCGCTCCGGTCAGATCCGGTCCGGTTCAAGTTCCGTTTCAAGTTCCCGCAGCAAAAAGAATCAACCATACTCAGTTCCGGTTCAAGTTCCGTTTCAAGAGGAACCCTCTTCCGTTCCCGTTCCTGTTCCTTTTTGTGGAAACGATGTAACCAAAGGACTTTCAGATTCGGAATTCAAGAATCTAATTCATGATATTTGCAATGAATATTGTGAATCAGATTCCGAAGATGACGATCTTGTTAAGGATCCTTTCAAGAAAGCAAAACGTGATGATGCTAATCTACCTTGTGCTACCACCAAGGACCTCCGTGCGAGGCGAATTTATTCCCCACTTGCCGGCGCCGGCGATTCTGATCGGGAAGTAGCTGAATTAGGGTTTTATGCTCCGTCGGTTCTGGAAAATGGCAGTGTGAGGACGGAATCAGCTGAAATTTCTGAATTAGGGTTTGGATCGCCATCAATTGCTGAAAACGGCGATACACCTGTGGATGATGCGAGGATCAAATCTAATAAGATTCTCGACGAGCCTCTGAATTTTGATAGGGGAATCACCAAGCTGTCAGATGAAGATTTGGGCGAAGAATCATTACAAACGACACCACCTAATGATGTCATCTATGTAGGTTTAGAAGCTAGCTGCGATGTGAGGAATGTGGAAGAGGCAGACACACTTGTTGTCAAAGATATGTCTCCTGCTGCTAATGTAGCTGAAAATTCAAGCGAGGGCCGGAAAAATAGCTCTGTTCAAAGGAGTAAATCTGTACTCAAACCGCGTTTACCTTTGAAATTGTTCAAAGCCCCAGGTTCATTCAATTACAAAAGGCTAATGGATGCTATGGGAGATAATTTCGGTATACCGAAATTGGGTCATTGTCATGAAGACAAGAAGGTTATGGGAGGTCAGGGATTGGAACTTCCTTTGACATCTGATAATCATGAAGGTTCTAAGCCTGAAACTAAGACTGATAGTTGCACCATGGGTGATACCAATGGGCCAGAACTGGCATCTTCACCAATGCAAGTAGATACCGAGAAAGTGAATGGCGAGTGTTTATCTGTGCCATCTGTGGATGATAAATGCTTGAGTGGATCAAAGGTGGATCTGGCTGCAGATTTTCTGGGTGCTAGAGATGTTGGTAATGCTTTCGACCACGGTGATGTTAAGCAAGATTCTTTCAACAGGAATAATCTTGACTGTGCTAAGGCTGCTGATCACAATGGCTGCGCCTTAGAGCAGCTTGGTGTTTTGAATGAAGATTGTATACCAATGACTCGTGATACTGAAATATGTGATGATATTGTGCTCAATGGAGACCAAATGCAGGGCATACCTCAGAATGTCAAACCTATGGATCTGACCAGAAACACTCAGGAAAGCACTGTTGAAGAGTTATACCCCAAAGCCGATAAGAGAAATAATCCACTCAAGAGCAAACATGTTCATAAACCATATTTGCACGGGAAGCTGATCAAAACCCCTGGTTCAGTCAACTATAGGAGGTTGCTTCCATATTTTAAGAATCTTCCCAAAGATGACTATGGTACATCTGGTGATCAGGCCCATCATAAAAATGAAGAGGCGGATTTATATGCAAAGGAGTTCCAACTTCCTTTGCCATCTCAAAGTGAAGAAACTTCTATTAGCAGACAAATGACAGTCAGTGGCTCTATTTGTGACAAAGTTGACTTGAATACTTTGGAAAACAACATCTCAGTCAATCCTGCTAATATGTCATCTCATGGCTACCAGCCAAAATTGCCATCTTTCCAAGACTCCTCCGAATTGCCAATACAATTTGATGCAAAAGAAATGGCACATGAGTGCTTATCTGCACCCTCTGTTGAGGCTAACTCTGAGAAAACTGTCATCAGTTCTAAAGATGAATGCTTGAGTGAATCAGCGACTGATCCTTGTTCCGTAATGGTGTGTGATAAGATTGTCACAAATGGTGGGTCAGCACCCAAAGAACAAAATTTGCTTAATGTCAATAATGATATCTCCAACCTTTCATTTGAGCATCATTCAAGCAATGAGAAAGGATTCACTATCGATTATGATGAAAGAAAGCAGTTTGTGGGTCTGGAGAAGCATGAATCTGTTAGCAGATGTCCTCCTAGTCTAAATCAATTGGATCCTAATATGTTAGATGCTGAAGAGAATGAAACAAGCAACCATGCAATTTGCAAAAATGACGATGTTGTGGTTTTAAGTCACGTCACCATCTCAAATGAAGAATCTAGTTCACAATCAGAGAAGATTATTTCTGAAAAACCGGCGTTACCAGACACTGCAACACATGGTGGTGGCAAAGCAAAAAGTCTTCTGAATGGCCTAGTTAATGGTTCAAAGATGCCTTCAAAAGGAAGCAATAACAAAAAGGCTAGTTTTGCTGGTGAGATGAAAAATGGTTCCGAATCCAATACTACACCGGTTCTAAATCGCTGCCCACGGGTTAAGTTTTTAAAACATGCTGGGTCTTTGAACTACAAAAGATTGCTTCCGATTTTGTTGGAAAATGAGAAGTCTAATTCCTGTGCTTCGAATAATGATCATTGCCCCAAACTTCAGAAGCTTTTGGATCACACACCACTTCTGCCAATTTCAGATTCGAATTTGCAAGTAACTCCTGGAAGTGATTCAAATGATTGTGATCCTATGGGTGATAGTACAGGAAATTCTGGTGCTCAGCAAGAAACAGAGTTGCAAGCTTGTGATTTAAATAGTGATAGTTTAAGCCCAAGATCTCAACTACAAGATAAACAGATTGTGTCAAATAGACCCTACTATCTGGAGAACTCCTTTGTTTCACCAATTTCTGTTCATAGAGCTTTACCAGTCACACCTTTAGGTCCTATAGCTGATCAAGTTGTCACTAGAGAAGAAGTGGGTACACCTGCCTTGTCCAACGTGGAGAAATCACCTGAAACACCTGGATGTTGTCGGAGCTTGTCCGAAATGAAAGTCACAGATCAACTTGATGCCCTTGGTGTTAGTTCCCGAAAAGGAATTTTGAGAAAAAACCCAAGAGGATGCAGAGGGCTTTGCACATGTTTGAACTGTGTTTCTTTTCGCCTTCATGCAGAAAGAGCATTTGAATTTTCTAGAAATCAGCTGCTAGATGCCGAAGAGGTTGCCCAAGACCTTATGAAGGAAGTATCCCATCTCAGAAACATGTTGTTTGAAAGATGTACTGATAATGTCAACGACACTCCTCTTTTGGATGAAAGTCAGGTGAAAGAAGCCTGCAGGAAAGCATCTGAAACAGAACAACTTGCAAAGGATCGACTTAGCCAGATGAATGATGATCTTAACATACATTGCAGAACACCTAGTCTGCAGCGACCAAGTGTTAAGTTTTCAGATCGTGTTGAGGAAAAGGTCATTCGACCAAACAGATTAAAAAATGGTTAA
Protein sequence

>Msa0700500

MDVIRNSRKRNVRSPPPASSTFTRSKAHRTRSGQIRSGSSSVSSSRSKKNQPYSVPVQVPFQEEPSSVPVPVPFCGNDVTKGLSDSEFKNLIHDICNEYCESDSEDDDLVKDPFKKAKRDDANLPCATTKDLRARRIYSPLAGAGDSDREVAELGFYAPSVLENGSVRTESAEISELGFGSPSIAENGDTPVDDARIKSNKILDEPLNFDRGITKLSDEDLGEESLQTTPPNDVIYVGLEASCDVRNVEEADTLVVKDMSPAANVAENSSEGRKNSSVQRSKSVLKPRLPLKLFKAPGSFNYKRLMDAMGDNFGIPKLGHCHEDKKVMGGQGLELPLTSDNHEGSKPETKTDSCTMGDTNGPELASSPMQVDTEKVNGECLSVPSVDDKCLSGSKVDLAADFLGARDVGNAFDHGDVKQDSFNRNNLDCAKAADHNGCALEQLGVLNEDCIPMTRDTEICDDIVLNGDQMQGIPQNVKPMDLTRNTQESTVEELYPKADKRNNPLKSKHVHKPYLHGKLIKTPGSVNYRRLLPYFKNLPKDDYGTSGDQAHHKNEEADLYAKEFQLPLPSQSEETSISRQMTVSGSICDKVDLNTLENNISVNPANMSSHGYQPKLPSFQDSSELPIQFDAKEMAHECLSAPSVEANSEKTVISSKDECLSESATDPCSVMVCDKIVTNGGSAPKEQNLLNVNNDISNLSFEHHSSNEKGFTIDYDERKQFVGLEKHESVSRCPPSLNQLDPNMLDAEENETSNHAICKNDDVVVLSHVTISNEESSSQSEKIISEKPALPDTATHGGGKAKSLLNGLVNGSKMPSKGSNNKKASFAGEMKNGSESNTTPVLNRCPRVKFLKHAGSLNYKRLLPILLENEKSNSCASNNDHCPKLQKLLDHTPLLPISDSNLQVTPGSDSNDCDPMGDSTGNSGAQQETELQACDLNSDSLSPRSQLQDKQIVSNRPYYLENSFVSPISVHRALPVTPLGPIADQVVTREEVGTPALSNVEKSPETPGCCRSLSEMKVTDQLDALGVSSRKGILRKNPRGCRGLCTCLNCVSFRLHAERAFEFSRNQLLDAEEVAQDLMKEVSHLRNMLFERCTDNVNDTPLLDESQVKEACRKASETEQLAKDRLSQMNDDLNIHCRTPSLQRPSVKFSDRVEEKVIRPNRLKNG*