Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0430080 | XP_003603058.1 | 96.247 | 373 | 13 | 1 | 1 | 372 | 1 | 373 | 0.0 | 743 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0430080 | sp|Q9C635|HSFB4_ARATH | 55.443 | 395 | 104 | 14 | 1 | 371 | 1 | 347 | 2.48e-119 | 352 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0430080 | G7J6F2 | 96.247 | 373 | 13 | 1 | 1 | 372 | 1 | 373 | 0.0 | 743 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0430080 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015570 | Msa0430080 | 0.812868 | 3.414157e-51 | -8.615850e-47 |
| Msa0029960 | Msa0430080 | 0.801283 | 9.685695e-49 | -8.615850e-47 |
| Msa0067060 | Msa0430080 | 0.815547 | 8.742617e-52 | -8.615850e-47 |
| Msa0141640 | Msa0430080 | 0.819502 | 1.123192e-52 | -8.615850e-47 |
| Msa0156050 | Msa0430080 | 0.828512 | 8.629817e-55 | -8.615850e-47 |
| Msa0156090 | Msa0430080 | 0.821974 | 3.035290e-53 | -8.615850e-47 |
| Msa0170070 | Msa0430080 | 0.811657 | 6.272994e-51 | -8.615850e-47 |
| Msa0172590 | Msa0430080 | 0.809850 | 1.542970e-50 | -8.615850e-47 |
| Msa0373170 | Msa0430080 | 0.800023 | 1.750584e-48 | -8.615850e-47 |
| Msa0380540 | Msa0430080 | 0.977226 | 2.327496e-143 | -8.615850e-47 |
| Msa0381730 | Msa0430080 | 0.810613 | 1.056557e-50 | -8.615850e-47 |
| Msa0382740 | Msa0430080 | 0.833840 | 4.231172e-56 | -8.615850e-47 |
| Msa0382770 | Msa0430080 | 0.825985 | 3.477506e-54 | -8.615850e-47 |
| Msa0430080 | Msa0430170 | 0.994591 | 1.591096e-208 | -8.615850e-47 |
| Msa0430080 | Msa0431200 | 0.804559 | 2.037813e-49 | -8.615850e-47 |
| Msa0430080 | Msa0461550 | 0.807185 | 5.718860e-50 | -8.615850e-47 |
| Msa0430080 | Msa0500450 | 0.977717 | 2.419870e-144 | -8.615850e-47 |
| Msa0430080 | Msa0507920 | 0.809495 | 1.839701e-50 | -8.615850e-47 |
| Msa0430080 | Msa0520260 | 0.801619 | 8.268270e-49 | -8.615850e-47 |
| Msa0430080 | Msa0521320 | 0.815473 | 9.078507e-52 | -8.615850e-47 |
| Msa0430080 | Msa0524800 | 0.844180 | 8.867341e-59 | -8.615850e-47 |
| Msa0430080 | Msa0525000 | 0.833762 | 4.427473e-56 | -8.615850e-47 |
| Msa0430080 | Msa0541740 | 0.833222 | 6.037380e-56 | -8.615850e-47 |
| Msa0430080 | Msa0554300 | 0.813958 | 1.965976e-51 | -8.615850e-47 |
| Msa0430080 | Msa0557850 | 0.828167 | 1.045025e-54 | -8.615850e-47 |
| Msa0430080 | Msa0561560 | 0.818755 | 1.660914e-52 | -8.615850e-47 |
| Msa0430080 | Msa0564980 | 0.853894 | 1.767088e-61 | -8.615850e-47 |
| Msa0430080 | Msa0570010 | 0.835575 | 1.549147e-56 | -8.615850e-47 |
| Msa0430080 | Msa0571350 | 0.812729 | 3.660975e-51 | -8.615850e-47 |
| Msa0430080 | Msa0575710 | 0.806798 | 6.905525e-50 | -8.615850e-47 |
| Msa0430080 | Msa0608350 | 0.823583 | 1.281005e-53 | -8.615850e-47 |
| Msa0430080 | Msa0612520 | 0.849484 | 3.139858e-60 | -8.615850e-47 |
| Msa0430080 | Msa0619710 | 0.800716 | 1.265118e-48 | -8.615850e-47 |
| Msa0430080 | Msa0625340 | 0.800064 | 1.717173e-48 | -8.615850e-47 |
| Msa0430080 | Msa0648760 | 0.803573 | 3.268294e-49 | -8.615850e-47 |
| Msa0430080 | Msa0653160 | 0.832541 | 8.913344e-56 | -8.615850e-47 |
| Msa0430080 | Msa0654740 | 0.803008 | 4.278144e-49 | -8.615850e-47 |
| Msa0430080 | Msa0657210 | 0.810737 | 9.933121e-51 | -8.615850e-47 |
| Msa0430080 | Msa0660260 | 0.814950 | 1.186332e-51 | -8.615850e-47 |
| Msa0430080 | Msa0688620 | 0.843607 | 1.262971e-58 | -8.615850e-47 |
| Msa0430080 | Msa0690320 | 0.807500 | 4.902994e-50 | -8.615850e-47 |
| Msa0430080 | Msa0691270 | 0.828281 | 9.808662e-55 | -8.615850e-47 |
| Msa0430080 | Msa0695560 | 0.823915 | 1.070912e-53 | -8.615850e-47 |
| Msa0430080 | Msa0701250 | 0.830245 | 3.274215e-55 | -8.615850e-47 |
| Msa0430080 | Msa0749190 | 0.844783 | 6.105748e-59 | -8.615850e-47 |
| Msa0430080 | Msa0750520 | 0.845661 | 3.533385e-59 | -8.615850e-47 |
| Msa0430080 | Msa0827420 | 0.804721 | 1.885403e-49 | -8.615850e-47 |
| Msa0430080 | Msa0900090 | 0.805098 | 1.572442e-49 | -8.615850e-47 |
| Msa0430080 | Msa0901150 | 0.832272 | 1.039099e-55 | -8.615850e-47 |
| Msa0430080 | Msa0926080 | 0.810543 | 1.093841e-50 | -8.615850e-47 |
| Msa0430080 | Msa0965470 | 0.810677 | 1.023567e-50 | -8.615850e-47 |
| Msa0430080 | Msa0966710 | 0.843572 | 1.290533e-58 | -8.615850e-47 |
| Msa0430080 | Msa1000970 | 0.849847 | 2.486172e-60 | -8.615850e-47 |
| Msa0430080 | Msa1008850 | 0.815073 | 1.114052e-51 | -8.615850e-47 |
| Msa0430080 | Msa1060900 | 0.803835 | 2.883959e-49 | -8.615850e-47 |
| Msa0430080 | Msa1071410 | 0.844077 | 9.451663e-59 | -8.615850e-47 |
| Msa0430080 | Msa1078880 | 0.823552 | 1.302776e-53 | -8.615850e-47 |
| Msa0430080 | Msa1078970 | 0.822343 | 2.491946e-53 | -8.615850e-47 |
| Msa0430080 | Msa1079640 | 0.823353 | 1.450202e-53 | -8.615850e-47 |
| Msa0430080 | Msa1082380 | 0.807883 | 4.065780e-50 | -8.615850e-47 |
| Msa0430080 | Msa1130780 | 0.823559 | 1.297631e-53 | -8.615850e-47 |
| Msa0430080 | Msa1138800 | 0.800732 | 1.255388e-48 | -8.615850e-47 |
| Msa0430080 | Msa1162880 | 0.800240 | 1.581029e-48 | -8.615850e-47 |
| Msa0430080 | Msa1169190 | 0.821356 | 4.216425e-53 | -8.615850e-47 |
| Msa0430080 | Msa1212700 | 0.830839 | 2.342293e-55 | -8.615850e-47 |
| Msa0430080 | Msa1212920 | 0.822603 | 2.168168e-53 | -8.615850e-47 |
| Msa0430080 | Msa1219770 | 0.804646 | 1.954411e-49 | -8.615850e-47 |
| Msa0430080 | Msa1228580 | 0.802787 | 4.753230e-49 | -8.615850e-47 |
| Msa0430080 | Msa1228630 | 0.825930 | 3.582806e-54 | -8.615850e-47 |
| Msa0430080 | Msa1262570 | 0.806284 | 8.865488e-50 | -8.615850e-47 |
| Msa0430080 | Msa1266690 | 0.810142 | 1.335381e-50 | -8.615850e-47 |
| Msa0430080 | Msa1267930 | 0.830460 | 2.899844e-55 | -8.615850e-47 |
| Msa0430080 | Msa1294790 | 0.802518 | 5.402051e-49 | -8.615850e-47 |
| Msa0430080 | Msa1296330 | 0.815893 | 7.318919e-52 | -8.615850e-47 |
| Msa0430080 | Msa1297070 | 0.800200 | 1.611364e-48 | -8.615850e-47 |
| Msa0430080 | Msa1299980 | 0.839278 | 1.743770e-57 | -8.615850e-47 |
| Msa0430080 | Msa1308850 | 0.816407 | 5.618128e-52 | -8.615850e-47 |
| Msa0430080 | Msa1331650 | 0.824226 | 9.050965e-54 | -8.615850e-47 |
| Msa0430080 | Msa1333360 | 0.805232 | 1.474396e-49 | -8.615850e-47 |
| Msa0430080 | Msa1341750 | 0.809869 | 1.528580e-50 | -8.615850e-47 |
| Msa0430080 | Msa1342810 | 0.841090 | 5.865962e-58 | -8.615850e-47 |
| Msa0430080 | Msa1361930 | 0.802749 | 4.839255e-49 | -8.615850e-47 |
| Msa0430080 | Msa1381800 | 0.838550 | 2.690615e-57 | -8.615850e-47 |
| Msa0430080 | Msa1383310 | 0.801520 | 8.663442e-49 | -8.615850e-47 |
| Msa0430080 | Msa1389820 | 0.808228 | 3.433972e-50 | -8.615850e-47 |
| Msa0430080 | Msa1417930 | 0.810838 | 9.447225e-51 | -8.615850e-47 |
| Msa0281540 | Msa0430080 | 0.806919 | 6.509488e-50 | -8.615850e-47 |
| Msa0286940 | Msa0430080 | 0.807404 | 5.139377e-50 | -8.615850e-47 |
| Msa0314080 | Msa0430080 | 0.800986 | 1.113952e-48 | -8.615850e-47 |
| Msa0320580 | Msa0430080 | 0.802073 | 6.670110e-49 | -8.615850e-47 |
| Msa0344110 | Msa0430080 | 0.801604 | 8.325438e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0430080 | MtrunA17_Chr3g0134031 | 96.247 | 373 | 13 | 1 | 1 | 372 | 1 | 373 | 0.0 | 743 |
| Msa0430080 | MtrunA17_Chr5g0441531 | 47.337 | 338 | 87 | 11 | 1 | 335 | 1 | 250 | 1.42e-87 | 265 |
| Msa0430080 | MtrunA17_Chr5g0397881 | 47.391 | 230 | 107 | 5 | 1 | 228 | 1 | 218 | 6.53e-59 | 194 |
| Msa0430080 | MtrunA17_Chr6g0472421 | 46.429 | 224 | 89 | 5 | 15 | 227 | 24 | 227 | 2.34e-55 | 185 |
| Msa0430080 | MtrunA17_Chr5g0402291 | 44.796 | 221 | 85 | 5 | 17 | 229 | 2 | 193 | 4.25e-51 | 172 |
| Msa0430080 | MtrunA17_Chr1g0203601 | 42.326 | 215 | 95 | 2 | 16 | 229 | 10 | 196 | 5.33e-51 | 172 |
| Msa0430080 | MtrunA17_Chr7g0257331 | 39.744 | 234 | 91 | 5 | 9 | 237 | 2 | 190 | 1.27e-47 | 161 |
| Msa0430080 | MtrunA17_Chr6g0467041 | 74.194 | 93 | 24 | 0 | 23 | 115 | 21 | 113 | 2.80e-46 | 160 |
| Msa0430080 | MtrunA17_Chr8g0375041 | 40.278 | 216 | 83 | 4 | 17 | 229 | 2 | 174 | 5.92e-45 | 155 |
| Msa0430080 | MtrunA17_Chr5g0410881 | 72.632 | 95 | 26 | 0 | 21 | 115 | 29 | 123 | 2.58e-44 | 159 |
| Msa0430080 | MtrunA17_Chr7g0260331 | 69.388 | 98 | 30 | 0 | 18 | 115 | 43 | 140 | 3.19e-43 | 154 |
| Msa0430080 | MtrunA17_Chr8g0378061 | 72.527 | 91 | 25 | 0 | 25 | 115 | 23 | 113 | 1.44e-41 | 152 |
| Msa0430080 | MtrunA17_Chr1g0204741 | 65.049 | 103 | 36 | 0 | 18 | 120 | 34 | 136 | 6.68e-41 | 146 |
| Msa0430080 | MtrunA17_Chr8g0379701 | 64.646 | 99 | 34 | 1 | 17 | 115 | 6 | 103 | 1.70e-39 | 144 |
| Msa0430080 | MtrunA17_Chr4g0039891 | 42.487 | 193 | 63 | 4 | 24 | 216 | 12 | 156 | 7.99e-39 | 144 |
| Msa0430080 | MtrunA17_Chr1g0185131 | 64.078 | 103 | 36 | 1 | 22 | 123 | 30 | 132 | 3.56e-38 | 140 |
| Msa0430080 | MtrunA17_Chr4g0071051 | 59.091 | 110 | 44 | 1 | 18 | 126 | 95 | 204 | 1.66e-37 | 139 |
| Msa0430080 | MtrunA17_Chr6g0485571 | 62.105 | 95 | 36 | 0 | 21 | 115 | 8 | 102 | 9.39e-37 | 136 |
| Msa0430080 | MtrunA17_Chr3g0135831 | 56.757 | 111 | 43 | 1 | 18 | 123 | 40 | 150 | 1.72e-36 | 136 |
| Msa0430080 | MtrunA17_Chr2g0330821 | 65.957 | 94 | 32 | 0 | 22 | 115 | 77 | 170 | 3.80e-36 | 134 |
| Msa0430080 | MtrunA17_Chr2g0284481 | 61.000 | 100 | 38 | 1 | 17 | 116 | 9 | 107 | 4.66e-36 | 135 |
| Msa0430080 | MtrunA17_Chr4g0047421 | 58.000 | 100 | 38 | 1 | 21 | 116 | 30 | 129 | 1.62e-34 | 126 |
| Msa0430080 | MtrunA17_Chr8g0392001 | 62.766 | 94 | 34 | 1 | 23 | 115 | 21 | 114 | 4.27e-33 | 127 |
| Msa0430080 | MtrunA17_Chr1g0179321 | 66.667 | 60 | 20 | 0 | 24 | 83 | 49 | 108 | 2.63e-22 | 90.9 |
| Msa0430080 | MtrunA17_Chr4g0023771 | 56.923 | 65 | 28 | 0 | 17 | 81 | 8 | 72 | 3.65e-18 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0430080 | AT1G46264.1 | 55.443 | 395 | 104 | 14 | 1 | 371 | 1 | 347 | 2.53e-120 | 352 |
| Msa0430080 | AT4G11660.1 | 49.533 | 214 | 105 | 2 | 16 | 227 | 51 | 263 | 9.73e-60 | 197 |
| Msa0430080 | AT5G62020.1 | 44.726 | 237 | 109 | 4 | 17 | 253 | 16 | 230 | 3.18e-58 | 191 |
| Msa0430080 | AT4G36990.1 | 45.794 | 214 | 89 | 2 | 17 | 230 | 7 | 193 | 6.71e-54 | 179 |
| Msa0430080 | AT1G32330.2 | 43.627 | 204 | 54 | 3 | 21 | 216 | 34 | 184 | 1.27e-45 | 163 |
| Msa0430080 | AT1G32330.1 | 43.627 | 204 | 54 | 3 | 21 | 216 | 34 | 184 | 1.33e-45 | 163 |
| Msa0430080 | AT2G41690.1 | 41.905 | 210 | 89 | 5 | 22 | 228 | 38 | 217 | 4.69e-45 | 155 |
| Msa0430080 | AT4G17750.1 | 70.707 | 99 | 29 | 0 | 20 | 118 | 48 | 146 | 4.89e-45 | 162 |
| Msa0430080 | AT3G22830.1 | 67.000 | 100 | 33 | 0 | 18 | 117 | 55 | 154 | 5.47e-42 | 152 |
| Msa0430080 | AT3G02990.1 | 61.261 | 111 | 39 | 2 | 8 | 115 | 5 | 114 | 2.41e-40 | 149 |
| Msa0430080 | AT5G03720.2 | 67.677 | 99 | 32 | 0 | 24 | 122 | 55 | 153 | 2.94e-40 | 147 |
| Msa0430080 | AT5G03720.1 | 67.677 | 99 | 32 | 0 | 24 | 122 | 55 | 153 | 2.94e-40 | 147 |
| Msa0430080 | AT5G16820.1 | 68.367 | 98 | 30 | 1 | 20 | 117 | 24 | 120 | 1.40e-39 | 147 |
| Msa0430080 | AT5G16820.2 | 68.367 | 98 | 30 | 1 | 20 | 117 | 24 | 120 | 1.40e-39 | 147 |
| Msa0430080 | AT5G43840.1 | 64.356 | 101 | 36 | 0 | 22 | 122 | 17 | 117 | 2.89e-39 | 141 |
| Msa0430080 | AT2G26150.1 | 65.957 | 94 | 32 | 0 | 22 | 115 | 42 | 135 | 1.99e-38 | 140 |
| Msa0430080 | AT2G26150.4 | 65.957 | 94 | 32 | 0 | 22 | 115 | 42 | 135 | 1.99e-38 | 140 |
| Msa0430080 | AT3G24520.1 | 62.245 | 98 | 37 | 0 | 21 | 118 | 14 | 111 | 6.23e-38 | 139 |
| Msa0430080 | AT4G13980.1 | 67.033 | 91 | 30 | 0 | 25 | 115 | 24 | 114 | 1.07e-37 | 141 |
| Msa0430080 | AT3G51910.1 | 61.856 | 97 | 37 | 0 | 18 | 114 | 23 | 119 | 3.04e-37 | 135 |
| Msa0430080 | AT3G63350.1 | 60.825 | 97 | 38 | 0 | 18 | 114 | 22 | 118 | 1.09e-35 | 132 |
| Msa0430080 | AT5G54070.1 | 59.341 | 91 | 37 | 0 | 24 | 114 | 71 | 161 | 5.28e-34 | 129 |
| Msa0430080 | AT4G18880.1 | 64.646 | 99 | 34 | 1 | 17 | 115 | 9 | 106 | 1.78e-31 | 123 |
| Msa0430080 | AT1G67970.1 | 57.732 | 97 | 40 | 1 | 23 | 118 | 18 | 114 | 6.76e-31 | 121 |
| Msa0430080 | AT5G45710.3 | 59.783 | 92 | 37 | 0 | 24 | 115 | 13 | 104 | 2.99e-30 | 119 |
| Msa0430080 | AT5G45710.1 | 59.783 | 92 | 37 | 0 | 24 | 115 | 13 | 104 | 2.99e-30 | 119 |
| Msa0430080 | AT4G18870.1 | 42.553 | 94 | 51 | 1 | 18 | 108 | 137 | 230 | 1.17e-20 | 91.3 |
| Msa0430080 | AT4G18870.1 | 44.186 | 86 | 43 | 3 | 25 | 108 | 14 | 96 | 3.45e-16 | 78.6 |
| Msa0430080 | AT1G77570.1 | 38.636 | 88 | 49 | 3 | 25 | 108 | 27 | 113 | 2.27e-12 | 64.7 |
Find 78 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTTGTTTCCAAACTATT+TGG | 0.202751 | 3_2:+81676109 | None:intergenic |
| AAACAAGGCTCGTTTGGTTT+TGG | 0.245774 | 3_2:-81676092 | Msa0430080:CDS |
| TGAATCATCATCACTGAAAA+TGG | 0.259439 | 3_2:-81677310 | Msa0430080:exon |
| GGATTATTAGATCCACATTC+AGG | 0.261808 | 3_2:+81676130 | None:intergenic |
| TGAAGACGAGTCATATGTTT+AGG | 0.266459 | 3_2:+81676304 | None:intergenic |
| CTAACTCTAGTGTTTGAAAA+TGG | 0.272288 | 3_2:+81676712 | None:intergenic |
| AAGCCAATGAACCAGCTTTC+GGG | 0.281382 | 3_2:-81676343 | Msa0430080:CDS |
| ATCAACAAGTTGGTATGTTT+TGG | 0.282286 | 3_2:+81677212 | None:intergenic |
| CTATTGATGTAGGTGGATTT+TGG | 0.289446 | 3_2:-81675763 | Msa0430080:three_prime_UTR |
| TTAACTTCATCATTTGTTAA+TGG | 0.296353 | 3_2:-81676628 | Msa0430080:CDS |
| GAAGTTGTGCATTTAAAGTT+TGG | 0.305380 | 3_2:+81675709 | None:intergenic |
| TTAACAAATGATGAAGTTAA+TGG | 0.309297 | 3_2:+81676631 | None:intergenic |
| ATGAGAATCCTAAGCTAGTT+AGG | 0.314254 | 3_2:-81675998 | Msa0430080:three_prime_UTR |
| TTGTTGTGTTTGAAGTAGTT+AGG | 0.319993 | 3_2:+81677099 | None:intergenic |
| ATCTAATAATCCAAATAGTT+TGG | 0.322798 | 3_2:-81676119 | Msa0430080:CDS |
| AGGAGGTCTCTAGCAAATTC+TGG | 0.338598 | 3_2:+81677123 | None:intergenic |
| ATGACTCCACCTTCGTTGTT+TGG | 0.343318 | 3_2:-81677152 | Msa0430080:CDS |
| TAGTTGTTTGTTGCTGTTGT+TGG | 0.344004 | 3_2:+81676598 | None:intergenic |
| AAAGCCAATGAACCAGCTTT+CGG | 0.347409 | 3_2:-81676344 | Msa0430080:CDS |
| TGTTGTGTTTGAAGTAGTTA+GGG | 0.361431 | 3_2:+81677100 | None:intergenic |
| CACAGATCACATCGTCTCTT+GGG | 0.368339 | 3_2:-81677181 | Msa0430080:CDS |
| GGAAACAAACAAGGCTCGTT+TGG | 0.378669 | 3_2:-81676098 | Msa0430080:CDS |
| GAGCTTCTTGATGTGTTTGT+TGG | 0.386154 | 3_2:+81676241 | None:intergenic |
| GAAGATCATGATGATATTGA+TGG | 0.395870 | 3_2:-81675860 | Msa0430080:three_prime_UTR |
| ATTGAGAACAAAGATAATAT+TGG | 0.400288 | 3_2:+81675786 | None:intergenic |
| GAAGACGAGTCATATGTTTA+GGG | 0.405370 | 3_2:+81676305 | None:intergenic |
| TGTTCTCAATCTATTGATGT+AGG | 0.411507 | 3_2:-81675773 | Msa0430080:three_prime_UTR |
| TAAGAGTTACTTGGAGCTAC+TGG | 0.420379 | 3_2:+81676442 | None:intergenic |
| ACATTACCACCACCATTCAT+AGG | 0.425778 | 3_2:+81676379 | None:intergenic |
| TAGCCCGAAAGCTGGTTCAT+TGG | 0.429834 | 3_2:+81676340 | None:intergenic |
| CCACAGATCACATCGTCTCT+TGG | 0.431871 | 3_2:-81677182 | Msa0430080:CDS |
| TTGTTCATCAGAGTATTCAT+TGG | 0.454805 | 3_2:+81676678 | None:intergenic |
| CCACCACCATTCATAGGAGT+TGG | 0.459985 | 3_2:+81676385 | None:intergenic |
| CTGATGAACAAGTCAACAAC+TGG | 0.462821 | 3_2:-81676666 | Msa0430080:CDS |
| AGCTCAATAACAATGGTTGA+AGG | 0.469701 | 3_2:-81676223 | Msa0430080:CDS |
| ACATCACAGCCACAACAAAC+AGG | 0.483395 | 3_2:-81676787 | Msa0430080:CDS |
| GATGAAGAGTAAGAGTTACT+TGG | 0.490480 | 3_2:+81676433 | None:intergenic |
| TTAGCAAACTCCCATCTGTC+AGG | 0.497806 | 3_2:+81676865 | None:intergenic |
| GAAAATGGAAAGAAACTTGG+TGG | 0.498648 | 3_2:+81676727 | None:intergenic |
| GATTATTAGATCCACATTCA+GGG | 0.505417 | 3_2:+81676131 | None:intergenic |
| GTGGAACATTGTGATGCTGC+TGG | 0.507886 | 3_2:+81676746 | None:intergenic |
| TGTGTTTGAAGTAGTTAGGG+AGG | 0.509850 | 3_2:+81677103 | None:intergenic |
| TCATCAGAGTATTCATTGGA+TGG | 0.511281 | 3_2:+81676682 | None:intergenic |
| GAAAGATTGTACCTGACAGA+TGG | 0.519136 | 3_2:-81676876 | Msa0430080:CDS |
| GTTTGAAGTAGTTAGGGAGG+AGG | 0.523740 | 3_2:+81677106 | None:intergenic |
| TCAAATCCAACTCCTATGAA+TGG | 0.530340 | 3_2:-81676391 | Msa0430080:CDS |
| AATTGTAATAGCCCGAAAGC+TGG | 0.534218 | 3_2:+81676332 | None:intergenic |
| TCTCAATCTATTGATGTAGG+TGG | 0.534364 | 3_2:-81675770 | Msa0430080:three_prime_UTR |
| TTTGAAAATGGAAAGAAACT+TGG | 0.548152 | 3_2:+81676724 | None:intergenic |
| TGGTGGTGGTAATGTTTCAA+TGG | 0.548976 | 3_2:-81676371 | Msa0430080:CDS |
| ACTTCATCATTTGTTAATGG+AGG | 0.552014 | 3_2:-81676625 | Msa0430080:CDS |
| CCACAAAATCAATCCCATCA+TGG | 0.552202 | 3_2:-81676280 | Msa0430080:CDS |
| AGTTCACATTCATACCATGA+TGG | 0.552494 | 3_2:+81676266 | None:intergenic |
| ATGTTGATTCCTGTTTGTTG+TGG | 0.553850 | 3_2:+81676778 | None:intergenic |
| AAAAGAGTGCACCCTGAATG+TGG | 0.555827 | 3_2:-81676142 | Msa0430080:CDS |
| TTCAATAACACACACAACAC+TGG | 0.558866 | 3_2:+81677329 | None:intergenic |
| ACAAATGATGAAGTTAATGG+TGG | 0.561209 | 3_2:+81676634 | None:intergenic |
| ACACTGGTTTAGAGAGGGAG+AGG | 0.565479 | 3_2:+81677345 | None:intergenic |
| GTTCACATTCATACCATGAT+GGG | 0.572426 | 3_2:+81676267 | None:intergenic |
| CCAACTCCTATGAATGGTGG+TGG | 0.572594 | 3_2:-81676385 | Msa0430080:CDS |
| AAAGATTGTACCTGACAGAT+GGG | 0.574158 | 3_2:-81676875 | Msa0430080:CDS |
| GCTCAATAACAATGGTTGAA+GGG | 0.590591 | 3_2:-81676222 | Msa0430080:CDS |
| GGAGTTGGATTTGAAGCTTG+TGG | 0.599678 | 3_2:+81676400 | None:intergenic |
| AAAACTAACTAACAAGTGGA+AGG | 0.604739 | 3_2:+81676028 | None:intergenic |
| TGGTTGGATCATCAACAAGT+TGG | 0.622309 | 3_2:+81677202 | None:intergenic |
| CACACAACACTGGTTTAGAG+AGG | 0.626575 | 3_2:+81677339 | None:intergenic |
| ACAGATCACATCGTCTCTTG+GGG | 0.629510 | 3_2:-81677180 | Msa0430080:CDS |
| ATCAAGAAGCTCAATAACAA+TGG | 0.631659 | 3_2:-81676230 | Msa0430080:CDS |
| GAGACGATGTGATCTGTGGT+TGG | 0.633776 | 3_2:+81677186 | None:intergenic |
| AAATAGTTTGGAAACAAACA+AGG | 0.638741 | 3_2:-81676107 | Msa0430080:CDS |
| AGGACGCCAAACAACGAAGG+TGG | 0.642419 | 3_2:+81677146 | None:intergenic |
| ACACAACACTGGTTTAGAGA+GGG | 0.651513 | 3_2:+81677340 | None:intergenic |
| AATCCAACTCCTATGAATGG+TGG | 0.654630 | 3_2:-81676388 | Msa0430080:CDS |
| ACTAACTAACAAGTGGAAGG+AGG | 0.655564 | 3_2:+81676031 | None:intergenic |
| CTTCTACTAGACAACTGTGA+AGG | 0.669455 | 3_2:-81677285 | Msa0430080:CDS |
| AGGTCTCTAGCAAATTCTGG+AGG | 0.693279 | 3_2:+81677126 | None:intergenic |
| TGGAGGACGCCAAACAACGA+AGG | 0.695849 | 3_2:+81677143 | None:intergenic |
| CCAAGAGACGATGTGATCTG+TGG | 0.707530 | 3_2:+81677182 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTCTTTGTTTTTT+AGG | - | chr3_2:81676199-81676218 | Msa0430080:CDS | 10.0% |
| !!! | TATTTTTTCTTTGTTTTTTA+GGG | - | chr3_2:81676200-81676219 | Msa0430080:CDS | 10.0% |
| !!! | TTATTTTTTCTTTGTTTTTT+AGG | - | chr3_2:81676199-81676218 | Msa0430080:CDS | 10.0% |
| !!! | TATTTTTTCTTTGTTTTTTA+GGG | - | chr3_2:81676200-81676219 | Msa0430080:CDS | 10.0% |
| !! | GCTAATGAATATTTCAAAAA+AGG | - | chr3_2:81676257-81676276 | Msa0430080:CDS | 20.0% |
| !! | TTAACAAATGATGAAGTTAA+TGG | + | chr3_2:81676476-81676495 | None:intergenic | 20.0% |
| !!! | TTAACTTCATCATTTGTTAA+TGG | - | chr3_2:81676476-81676495 | Msa0430080:CDS | 20.0% |
| !! | ATCTAATAATCCAAATAGTT+TGG | - | chr3_2:81676985-81677004 | Msa0430080:intron | 20.0% |
| !!! | AAAAGATCATGATTTTGATT+TGG | - | chr3_2:81677036-81677055 | Msa0430080:intron | 20.0% |
| !!! | AAAGATCATGATTTTGATTT+GGG | - | chr3_2:81677037-81677056 | Msa0430080:intron | 20.0% |
| !! | ATTGAGAACAAAGATAATAT+TGG | + | chr3_2:81677321-81677340 | None:intergenic | 20.0% |
| !! | GCTAATGAATATTTCAAAAA+AGG | - | chr3_2:81676257-81676276 | Msa0430080:CDS | 20.0% |
| !! | TTAACAAATGATGAAGTTAA+TGG | + | chr3_2:81676476-81676495 | None:intergenic | 20.0% |
| !!! | TTAACTTCATCATTTGTTAA+TGG | - | chr3_2:81676476-81676495 | Msa0430080:CDS | 20.0% |
| !! | ATCTAATAATCCAAATAGTT+TGG | - | chr3_2:81676985-81677004 | Msa0430080:intron | 20.0% |
| !!! | AAAAGATCATGATTTTGATT+TGG | - | chr3_2:81677036-81677055 | Msa0430080:intron | 20.0% |
| !!! | AAAGATCATGATTTTGATTT+GGG | - | chr3_2:81677037-81677056 | Msa0430080:intron | 20.0% |
| !! | ATTGAGAACAAAGATAATAT+TGG | + | chr3_2:81677321-81677340 | None:intergenic | 20.0% |
| ! | TTTGAAAATGGAAAGAAACT+TGG | + | chr3_2:81676383-81676402 | None:intergenic | 25.0% |
| ! | TTGTTTGTTTCCAAACTATT+TGG | + | chr3_2:81676998-81677017 | None:intergenic | 25.0% |
| ! | AAATAGTTTGGAAACAAACA+AGG | - | chr3_2:81676997-81677016 | Msa0430080:intron | 25.0% |
| ! | AAGAAAAACTAACTAACAAG+TGG | + | chr3_2:81677083-81677102 | None:intergenic | 25.0% |
| !! | AAAAAAAACCTAACTAGCTT+AGG | + | chr3_2:81677117-81677136 | None:intergenic | 25.0% |
| ! | TTTGAAAATGGAAAGAAACT+TGG | + | chr3_2:81676383-81676402 | None:intergenic | 25.0% |
| ! | TTGTTTGTTTCCAAACTATT+TGG | + | chr3_2:81676998-81677017 | None:intergenic | 25.0% |
| ! | AAATAGTTTGGAAACAAACA+AGG | - | chr3_2:81676997-81677016 | Msa0430080:intron | 25.0% |
| ! | AAGAAAAACTAACTAACAAG+TGG | + | chr3_2:81677083-81677102 | None:intergenic | 25.0% |
| !! | AAAAAAAACCTAACTAGCTT+AGG | + | chr3_2:81677117-81677136 | None:intergenic | 25.0% |
| TGAATCATCATCACTGAAAA+TGG | - | chr3_2:81675794-81675813 | Msa0430080:three_prime_UTR | 30.0% | |
| !!! | ATCAACAAGTTGGTATGTTT+TGG | + | chr3_2:81675895-81675914 | None:intergenic | 30.0% |
| ! | TGTTGTGTTTGAAGTAGTTA+GGG | + | chr3_2:81676007-81676026 | None:intergenic | 30.0% |
| ! | TTGTTGTGTTTGAAGTAGTT+AGG | + | chr3_2:81676008-81676027 | None:intergenic | 30.0% |
| CTAACTCTAGTGTTTGAAAA+TGG | + | chr3_2:81676395-81676414 | None:intergenic | 30.0% | |
| ! | TTGTTCATCAGAGTATTCAT+TGG | + | chr3_2:81676429-81676448 | None:intergenic | 30.0% |
| ACAAATGATGAAGTTAATGG+TGG | + | chr3_2:81676473-81676492 | None:intergenic | 30.0% | |
| ! | ACTTCATCATTTGTTAATGG+AGG | - | chr3_2:81676479-81676498 | Msa0430080:CDS | 30.0% |
| ATCAAGAAGCTCAATAACAA+TGG | - | chr3_2:81676874-81676893 | Msa0430080:CDS | 30.0% | |
| GATTATTAGATCCACATTCA+GGG | + | chr3_2:81676976-81676995 | None:intergenic | 30.0% | |
| AAAACTAACTAACAAGTGGA+AGG | + | chr3_2:81677079-81677098 | None:intergenic | 30.0% | |
| !!! | GATTATCAAGTTTTGAGTCA+CGG | - | chr3_2:81677212-81677231 | Msa0430080:CDS | 30.0% |
| GAAGATCATGATGATATTGA+TGG | - | chr3_2:81677244-81677263 | Msa0430080:CDS | 30.0% | |
| TGTTCTCAATCTATTGATGT+AGG | - | chr3_2:81677331-81677350 | Msa0430080:five_prime_UTR | 30.0% | |
| TGAATCATCATCACTGAAAA+TGG | - | chr3_2:81675794-81675813 | Msa0430080:three_prime_UTR | 30.0% | |
| !!! | ATCAACAAGTTGGTATGTTT+TGG | + | chr3_2:81675895-81675914 | None:intergenic | 30.0% |
| ! | TGTTGTGTTTGAAGTAGTTA+GGG | + | chr3_2:81676007-81676026 | None:intergenic | 30.0% |
| ! | TTGTTGTGTTTGAAGTAGTT+AGG | + | chr3_2:81676008-81676027 | None:intergenic | 30.0% |
| CTAACTCTAGTGTTTGAAAA+TGG | + | chr3_2:81676395-81676414 | None:intergenic | 30.0% | |
| ! | TTGTTCATCAGAGTATTCAT+TGG | + | chr3_2:81676429-81676448 | None:intergenic | 30.0% |
| ACAAATGATGAAGTTAATGG+TGG | + | chr3_2:81676473-81676492 | None:intergenic | 30.0% | |
| ! | ACTTCATCATTTGTTAATGG+AGG | - | chr3_2:81676479-81676498 | Msa0430080:CDS | 30.0% |
| ATCAAGAAGCTCAATAACAA+TGG | - | chr3_2:81676874-81676893 | Msa0430080:CDS | 30.0% | |
| GATTATTAGATCCACATTCA+GGG | + | chr3_2:81676976-81676995 | None:intergenic | 30.0% | |
| AAAACTAACTAACAAGTGGA+AGG | + | chr3_2:81677079-81677098 | None:intergenic | 30.0% | |
| !!! | GATTATCAAGTTTTGAGTCA+CGG | - | chr3_2:81677212-81677231 | Msa0430080:CDS | 30.0% |
| GAAGATCATGATGATATTGA+TGG | - | chr3_2:81677244-81677263 | Msa0430080:CDS | 30.0% | |
| TGTTCTCAATCTATTGATGT+AGG | - | chr3_2:81677331-81677350 | Msa0430080:five_prime_UTR | 30.0% | |
| TTCAATAACACACACAACAC+TGG | + | chr3_2:81675778-81675797 | None:intergenic | 35.0% | |
| GAAGAGATGATTGCTTACAT+AGG | + | chr3_2:81676060-81676079 | None:intergenic | 35.0% | |
| AAAGATTGTACCTGACAGAT+GGG | - | chr3_2:81676229-81676248 | Msa0430080:CDS | 35.0% | |
| !! | ATGTTGATTCCTGTTTGTTG+TGG | + | chr3_2:81676329-81676348 | None:intergenic | 35.0% |
| GAAAATGGAAAGAAACTTGG+TGG | + | chr3_2:81676380-81676399 | None:intergenic | 35.0% | |
| ! | TCATCAGAGTATTCATTGGA+TGG | + | chr3_2:81676425-81676444 | None:intergenic | 35.0% |
| ! | TAGTTGTTTGTTGCTGTTGT+TGG | + | chr3_2:81676509-81676528 | None:intergenic | 35.0% |
| GATGAAGAGTAAGAGTTACT+TGG | + | chr3_2:81676674-81676693 | None:intergenic | 35.0% | |
| TCAAATCCAACTCCTATGAA+TGG | - | chr3_2:81676713-81676732 | Msa0430080:CDS | 35.0% | |
| GAAGACGAGTCATATGTTTA+GGG | + | chr3_2:81676802-81676821 | None:intergenic | 35.0% | |
| TGAAGACGAGTCATATGTTT+AGG | + | chr3_2:81676803-81676822 | None:intergenic | 35.0% | |
| GTTCACATTCATACCATGAT+GGG | + | chr3_2:81676840-81676859 | None:intergenic | 35.0% | |
| AGTTCACATTCATACCATGA+TGG | + | chr3_2:81676841-81676860 | None:intergenic | 35.0% | |
| AGCTCAATAACAATGGTTGA+AGG | - | chr3_2:81676881-81676900 | Msa0430080:CDS | 35.0% | |
| GCTCAATAACAATGGTTGAA+GGG | - | chr3_2:81676882-81676901 | Msa0430080:CDS | 35.0% | |
| GGATTATTAGATCCACATTC+AGG | + | chr3_2:81676977-81676996 | None:intergenic | 35.0% | |
| ATGAGAATCCTAAGCTAGTT+AGG | - | chr3_2:81677106-81677125 | Msa0430080:CDS | 35.0% | |
| TCTCAATCTATTGATGTAGG+TGG | - | chr3_2:81677334-81677353 | Msa0430080:five_prime_UTR | 35.0% | |
| !! | CTATTGATGTAGGTGGATTT+TGG | - | chr3_2:81677341-81677360 | Msa0430080:five_prime_UTR | 35.0% |
| TTCAATAACACACACAACAC+TGG | + | chr3_2:81675778-81675797 | None:intergenic | 35.0% | |
| GAAGAGATGATTGCTTACAT+AGG | + | chr3_2:81676060-81676079 | None:intergenic | 35.0% | |
| AAAGATTGTACCTGACAGAT+GGG | - | chr3_2:81676229-81676248 | Msa0430080:CDS | 35.0% | |
| !! | ATGTTGATTCCTGTTTGTTG+TGG | + | chr3_2:81676329-81676348 | None:intergenic | 35.0% |
| GAAAATGGAAAGAAACTTGG+TGG | + | chr3_2:81676380-81676399 | None:intergenic | 35.0% | |
| ! | TCATCAGAGTATTCATTGGA+TGG | + | chr3_2:81676425-81676444 | None:intergenic | 35.0% |
| ! | TAGTTGTTTGTTGCTGTTGT+TGG | + | chr3_2:81676509-81676528 | None:intergenic | 35.0% |
| GATGAAGAGTAAGAGTTACT+TGG | + | chr3_2:81676674-81676693 | None:intergenic | 35.0% | |
| TCAAATCCAACTCCTATGAA+TGG | - | chr3_2:81676713-81676732 | Msa0430080:CDS | 35.0% | |
| GAAGACGAGTCATATGTTTA+GGG | + | chr3_2:81676802-81676821 | None:intergenic | 35.0% | |
| TGAAGACGAGTCATATGTTT+AGG | + | chr3_2:81676803-81676822 | None:intergenic | 35.0% | |
| GTTCACATTCATACCATGAT+GGG | + | chr3_2:81676840-81676859 | None:intergenic | 35.0% | |
| AGTTCACATTCATACCATGA+TGG | + | chr3_2:81676841-81676860 | None:intergenic | 35.0% | |
| AGCTCAATAACAATGGTTGA+AGG | - | chr3_2:81676881-81676900 | Msa0430080:CDS | 35.0% | |
| GCTCAATAACAATGGTTGAA+GGG | - | chr3_2:81676882-81676901 | Msa0430080:CDS | 35.0% | |
| GGATTATTAGATCCACATTC+AGG | + | chr3_2:81676977-81676996 | None:intergenic | 35.0% | |
| ATGAGAATCCTAAGCTAGTT+AGG | - | chr3_2:81677106-81677125 | Msa0430080:CDS | 35.0% | |
| TCTCAATCTATTGATGTAGG+TGG | - | chr3_2:81677334-81677353 | Msa0430080:five_prime_UTR | 35.0% | |
| !! | CTATTGATGTAGGTGGATTT+TGG | - | chr3_2:81677341-81677360 | Msa0430080:five_prime_UTR | 35.0% |
| !! | ACACAACACTGGTTTAGAGA+GGG | + | chr3_2:81675767-81675786 | None:intergenic | 40.0% |
| CTTCTACTAGACAACTGTGA+AGG | - | chr3_2:81675819-81675838 | Msa0430080:three_prime_UTR | 40.0% | |
| !!! | TGGTATGTTTTGGTGAGGAA+TGG | + | chr3_2:81675885-81675904 | None:intergenic | 40.0% |
| !!! | CAAGTTGGTATGTTTTGGTG+AGG | + | chr3_2:81675890-81675909 | None:intergenic | 40.0% |
| TGGTTGGATCATCAACAAGT+TGG | + | chr3_2:81675905-81675924 | None:intergenic | 40.0% | |
| ! | TGTGTTTGAAGTAGTTAGGG+AGG | + | chr3_2:81676004-81676023 | None:intergenic | 40.0% |
| GAAAGATTGTACCTGACAGA+TGG | - | chr3_2:81676228-81676247 | Msa0430080:CDS | 40.0% | |
| CTGATGAACAAGTCAACAAC+TGG | - | chr3_2:81676438-81676457 | Msa0430080:CDS | 40.0% | |
| TAAGAGTTACTTGGAGCTAC+TGG | + | chr3_2:81676665-81676684 | None:intergenic | 40.0% | |
| AATCCAACTCCTATGAATGG+TGG | - | chr3_2:81676716-81676735 | Msa0430080:CDS | 40.0% | |
| ACATTACCACCACCATTCAT+AGG | + | chr3_2:81676728-81676747 | None:intergenic | 40.0% | |
| !! | TGGTGGTGGTAATGTTTCAA+TGG | - | chr3_2:81676733-81676752 | Msa0430080:CDS | 40.0% |
| AAAGCCAATGAACCAGCTTT+CGG | - | chr3_2:81676760-81676779 | Msa0430080:CDS | 40.0% | |
| AATTGTAATAGCCCGAAAGC+TGG | + | chr3_2:81676775-81676794 | None:intergenic | 40.0% | |
| !! | CCATGATGGGATTGATTTTG+TGG | + | chr3_2:81676827-81676846 | None:intergenic | 40.0% |
| CCACAAAATCAATCCCATCA+TGG | - | chr3_2:81676824-81676843 | Msa0430080:CDS | 40.0% | |
| GAGCTTCTTGATGTGTTTGT+TGG | + | chr3_2:81676866-81676885 | None:intergenic | 40.0% | |
| ! | TGCAGCAAGACTAAGCTTTT+TGG | - | chr3_2:81676920-81676939 | Msa0430080:intron | 40.0% |
| !! | AAACAAGGCTCGTTTGGTTT+TGG | - | chr3_2:81677012-81677031 | Msa0430080:intron | 40.0% |
| ACTAACTAACAAGTGGAAGG+AGG | + | chr3_2:81677076-81677095 | None:intergenic | 40.0% | |
| !!! | TATCAAGTTTTGAGTCACGG+AGG | - | chr3_2:81677215-81677234 | Msa0430080:CDS | 40.0% |
| !! | ACACAACACTGGTTTAGAGA+GGG | + | chr3_2:81675767-81675786 | None:intergenic | 40.0% |
| CTTCTACTAGACAACTGTGA+AGG | - | chr3_2:81675819-81675838 | Msa0430080:three_prime_UTR | 40.0% | |
| !!! | TGGTATGTTTTGGTGAGGAA+TGG | + | chr3_2:81675885-81675904 | None:intergenic | 40.0% |
| !!! | CAAGTTGGTATGTTTTGGTG+AGG | + | chr3_2:81675890-81675909 | None:intergenic | 40.0% |
| TGGTTGGATCATCAACAAGT+TGG | + | chr3_2:81675905-81675924 | None:intergenic | 40.0% | |
| ! | TGTGTTTGAAGTAGTTAGGG+AGG | + | chr3_2:81676004-81676023 | None:intergenic | 40.0% |
| GAAAGATTGTACCTGACAGA+TGG | - | chr3_2:81676228-81676247 | Msa0430080:CDS | 40.0% | |
| CTGATGAACAAGTCAACAAC+TGG | - | chr3_2:81676438-81676457 | Msa0430080:CDS | 40.0% | |
| TAAGAGTTACTTGGAGCTAC+TGG | + | chr3_2:81676665-81676684 | None:intergenic | 40.0% | |
| AATCCAACTCCTATGAATGG+TGG | - | chr3_2:81676716-81676735 | Msa0430080:CDS | 40.0% | |
| ACATTACCACCACCATTCAT+AGG | + | chr3_2:81676728-81676747 | None:intergenic | 40.0% | |
| !! | TGGTGGTGGTAATGTTTCAA+TGG | - | chr3_2:81676733-81676752 | Msa0430080:CDS | 40.0% |
| AAAGCCAATGAACCAGCTTT+CGG | - | chr3_2:81676760-81676779 | Msa0430080:CDS | 40.0% | |
| AATTGTAATAGCCCGAAAGC+TGG | + | chr3_2:81676775-81676794 | None:intergenic | 40.0% | |
| !! | CCATGATGGGATTGATTTTG+TGG | + | chr3_2:81676827-81676846 | None:intergenic | 40.0% |
| CCACAAAATCAATCCCATCA+TGG | - | chr3_2:81676824-81676843 | Msa0430080:CDS | 40.0% | |
| GAGCTTCTTGATGTGTTTGT+TGG | + | chr3_2:81676866-81676885 | None:intergenic | 40.0% | |
| ! | TGCAGCAAGACTAAGCTTTT+TGG | - | chr3_2:81676920-81676939 | Msa0430080:intron | 40.0% |
| !! | AAACAAGGCTCGTTTGGTTT+TGG | - | chr3_2:81677012-81677031 | Msa0430080:intron | 40.0% |
| ACTAACTAACAAGTGGAAGG+AGG | + | chr3_2:81677076-81677095 | None:intergenic | 40.0% | |
| !!! | TATCAAGTTTTGAGTCACGG+AGG | - | chr3_2:81677215-81677234 | Msa0430080:CDS | 40.0% |
| !! | CACACAACACTGGTTTAGAG+AGG | + | chr3_2:81675768-81675787 | None:intergenic | 45.0% |
| ! | TTTTGGTGAGGAATGGAGCT+GGG | + | chr3_2:81675878-81675897 | None:intergenic | 45.0% |
| CACAGATCACATCGTCTCTT+GGG | - | chr3_2:81675923-81675942 | Msa0430080:three_prime_UTR | 45.0% | |
| ACAGATCACATCGTCTCTTG+GGG | - | chr3_2:81675924-81675943 | Msa0430080:three_prime_UTR | 45.0% | |
| ATGACTCCACCTTCGTTGTT+TGG | - | chr3_2:81675952-81675971 | Msa0430080:three_prime_UTR | 45.0% | |
| AGGTCTCTAGCAAATTCTGG+AGG | + | chr3_2:81675981-81676000 | None:intergenic | 45.0% | |
| AGGAGGTCTCTAGCAAATTC+TGG | + | chr3_2:81675984-81676003 | None:intergenic | 45.0% | |
| ! | GTTTGAAGTAGTTAGGGAGG+AGG | + | chr3_2:81676001-81676020 | None:intergenic | 45.0% |
| TAACGAATCGAAGCGACAAG+AGG | + | chr3_2:81676129-81676148 | None:intergenic | 45.0% | |
| TTAGCAAACTCCCATCTGTC+AGG | + | chr3_2:81676242-81676261 | None:intergenic | 45.0% | |
| ACATCACAGCCACAACAAAC+AGG | - | chr3_2:81676317-81676336 | Msa0430080:CDS | 45.0% | |
| ! | GGAGTTGGATTTGAAGCTTG+TGG | + | chr3_2:81676707-81676726 | None:intergenic | 45.0% |
| AAGCCAATGAACCAGCTTTC+GGG | - | chr3_2:81676761-81676780 | Msa0430080:CDS | 45.0% | |
| ! | TTCAGGGTGCACTCTTTTCT+TGG | + | chr3_2:81676960-81676979 | None:intergenic | 45.0% |
| ! | AAAAGAGTGCACCCTGAATG+TGG | - | chr3_2:81676962-81676981 | Msa0430080:intron | 45.0% |
| GGAAACAAACAAGGCTCGTT+TGG | - | chr3_2:81677006-81677025 | Msa0430080:intron | 45.0% | |
| !! | CACACAACACTGGTTTAGAG+AGG | + | chr3_2:81675768-81675787 | None:intergenic | 45.0% |
| ! | TTTTGGTGAGGAATGGAGCT+GGG | + | chr3_2:81675878-81675897 | None:intergenic | 45.0% |
| CACAGATCACATCGTCTCTT+GGG | - | chr3_2:81675923-81675942 | Msa0430080:three_prime_UTR | 45.0% | |
| ACAGATCACATCGTCTCTTG+GGG | - | chr3_2:81675924-81675943 | Msa0430080:three_prime_UTR | 45.0% | |
| ATGACTCCACCTTCGTTGTT+TGG | - | chr3_2:81675952-81675971 | Msa0430080:three_prime_UTR | 45.0% | |
| AGGTCTCTAGCAAATTCTGG+AGG | + | chr3_2:81675981-81676000 | None:intergenic | 45.0% | |
| AGGAGGTCTCTAGCAAATTC+TGG | + | chr3_2:81675984-81676003 | None:intergenic | 45.0% | |
| ! | GTTTGAAGTAGTTAGGGAGG+AGG | + | chr3_2:81676001-81676020 | None:intergenic | 45.0% |
| TAACGAATCGAAGCGACAAG+AGG | + | chr3_2:81676129-81676148 | None:intergenic | 45.0% | |
| TTAGCAAACTCCCATCTGTC+AGG | + | chr3_2:81676242-81676261 | None:intergenic | 45.0% | |
| ACATCACAGCCACAACAAAC+AGG | - | chr3_2:81676317-81676336 | Msa0430080:CDS | 45.0% | |
| ! | GGAGTTGGATTTGAAGCTTG+TGG | + | chr3_2:81676707-81676726 | None:intergenic | 45.0% |
| AAGCCAATGAACCAGCTTTC+GGG | - | chr3_2:81676761-81676780 | Msa0430080:CDS | 45.0% | |
| ! | TTCAGGGTGCACTCTTTTCT+TGG | + | chr3_2:81676960-81676979 | None:intergenic | 45.0% |
| ! | AAAAGAGTGCACCCTGAATG+TGG | - | chr3_2:81676962-81676981 | Msa0430080:intron | 45.0% |
| GGAAACAAACAAGGCTCGTT+TGG | - | chr3_2:81677006-81677025 | Msa0430080:intron | 45.0% | |
| !! | ACACTGGTTTAGAGAGGGAG+AGG | + | chr3_2:81675762-81675781 | None:intergenic | 50.0% |
| !! | GTTTTGGTGAGGAATGGAGC+TGG | + | chr3_2:81675879-81675898 | None:intergenic | 50.0% |
| GAGACGATGTGATCTGTGGT+TGG | + | chr3_2:81675921-81675940 | None:intergenic | 50.0% | |
| CCAAGAGACGATGTGATCTG+TGG | + | chr3_2:81675925-81675944 | None:intergenic | 50.0% | |
| CCACAGATCACATCGTCTCT+TGG | - | chr3_2:81675922-81675941 | Msa0430080:three_prime_UTR | 50.0% | |
| GTGGAACATTGTGATGCTGC+TGG | + | chr3_2:81676361-81676380 | None:intergenic | 50.0% | |
| CCACCACCATTCATAGGAGT+TGG | + | chr3_2:81676722-81676741 | None:intergenic | 50.0% | |
| CCAACTCCTATGAATGGTGG+TGG | - | chr3_2:81676719-81676738 | Msa0430080:CDS | 50.0% | |
| ! | TAGCCCGAAAGCTGGTTCAT+TGG | + | chr3_2:81676767-81676786 | None:intergenic | 50.0% |
| !! | TTTTGAGTCACGGAGGAGCT+AGG | - | chr3_2:81677222-81677241 | Msa0430080:CDS | 50.0% |
| !! | ACACTGGTTTAGAGAGGGAG+AGG | + | chr3_2:81675762-81675781 | None:intergenic | 50.0% |
| !! | GTTTTGGTGAGGAATGGAGC+TGG | + | chr3_2:81675879-81675898 | None:intergenic | 50.0% |
| GAGACGATGTGATCTGTGGT+TGG | + | chr3_2:81675921-81675940 | None:intergenic | 50.0% | |
| CCAAGAGACGATGTGATCTG+TGG | + | chr3_2:81675925-81675944 | None:intergenic | 50.0% | |
| CCACAGATCACATCGTCTCT+TGG | - | chr3_2:81675922-81675941 | Msa0430080:three_prime_UTR | 50.0% | |
| GTGGAACATTGTGATGCTGC+TGG | + | chr3_2:81676361-81676380 | None:intergenic | 50.0% | |
| CCACCACCATTCATAGGAGT+TGG | + | chr3_2:81676722-81676741 | None:intergenic | 50.0% | |
| CCAACTCCTATGAATGGTGG+TGG | - | chr3_2:81676719-81676738 | Msa0430080:CDS | 50.0% | |
| ! | TAGCCCGAAAGCTGGTTCAT+TGG | + | chr3_2:81676767-81676786 | None:intergenic | 50.0% |
| !! | TTTTGAGTCACGGAGGAGCT+AGG | - | chr3_2:81677222-81677241 | Msa0430080:CDS | 50.0% |
| AGGACGCCAAACAACGAAGG+TGG | + | chr3_2:81675961-81675980 | None:intergenic | 55.0% | |
| TGGAGGACGCCAAACAACGA+AGG | + | chr3_2:81675964-81675983 | None:intergenic | 55.0% | |
| AGGACGCCAAACAACGAAGG+TGG | + | chr3_2:81675961-81675980 | None:intergenic | 55.0% | |
| TGGAGGACGCCAAACAACGA+AGG | + | chr3_2:81675964-81675983 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 81675715 | 81677411 | 81675715 | ID=Msa0430080;Name=Msa0430080 |
| chr3_2 | mRNA | 81675715 | 81677411 | 81675715 | ID=Msa0430080-mRNA-1;Parent=Msa0430080;Name=Msa0430080-mRNA-1;_AED=0.05;_eAED=0.05;_QI=98|1|1|1|1|1|2|321|372 |
| chr3_2 | exon | 81675715 | 81676905 | 81675715 | ID=Msa0430080-mRNA-1:exon:22576;Parent=Msa0430080-mRNA-1 |
| chr3_2 | exon | 81677065 | 81677411 | 81677065 | ID=Msa0430080-mRNA-1:exon:22575;Parent=Msa0430080-mRNA-1 |
| chr3_2 | five_prime_UTR | 81677314 | 81677411 | 81677314 | ID=Msa0430080-mRNA-1:five_prime_utr;Parent=Msa0430080-mRNA-1 |
| chr3_2 | CDS | 81677065 | 81677313 | 81677065 | ID=Msa0430080-mRNA-1:cds;Parent=Msa0430080-mRNA-1 |
| chr3_2 | CDS | 81676036 | 81676905 | 81676036 | ID=Msa0430080-mRNA-1:cds;Parent=Msa0430080-mRNA-1 |
| chr3_2 | three_prime_UTR | 81675715 | 81676035 | 81675715 | ID=Msa0430080-mRNA-1:three_prime_utr;Parent=Msa0430080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
