Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0430170 | XP_003603058.1 | 96.247 | 373 | 13 | 1 | 1 | 372 | 1 | 373 | 0.0 | 743 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0430170 | sp|Q9C635|HSFB4_ARATH | 55.443 | 395 | 104 | 14 | 1 | 371 | 1 | 347 | 2.48e-119 | 352 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0430170 | G7J6F2 | 96.247 | 373 | 13 | 1 | 1 | 372 | 1 | 373 | 0.0 | 743 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0430170 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015570 | Msa0430170 | 0.808974 | 2.379191e-50 | -8.615850e-47 |
| Msa0067060 | Msa0430170 | 0.813876 | 2.049875e-51 | -8.615850e-47 |
| Msa0141640 | Msa0430170 | 0.815758 | 7.846419e-52 | -8.615850e-47 |
| Msa0156050 | Msa0430170 | 0.827473 | 1.534624e-54 | -8.615850e-47 |
| Msa0156090 | Msa0430170 | 0.820620 | 6.228545e-53 | -8.615850e-47 |
| Msa0170070 | Msa0430170 | 0.808113 | 3.632232e-50 | -8.615850e-47 |
| Msa0172590 | Msa0430170 | 0.808855 | 2.522556e-50 | -8.615850e-47 |
| Msa0373170 | Msa0430170 | 0.802319 | 5.936723e-49 | -8.615850e-47 |
| Msa0380540 | Msa0430170 | 0.973362 | 2.665109e-136 | -8.615850e-47 |
| Msa0381730 | Msa0430170 | 0.804486 | 2.110928e-49 | -8.615850e-47 |
| Msa0382740 | Msa0430170 | 0.830217 | 3.326014e-55 | -8.615850e-47 |
| Msa0382770 | Msa0430170 | 0.824343 | 8.496233e-54 | -8.615850e-47 |
| Msa0430080 | Msa0430170 | 0.994591 | 1.591096e-208 | -8.615850e-47 |
| Msa0430170 | Msa0461550 | 0.803089 | 4.117487e-49 | -8.615850e-47 |
| Msa0430170 | Msa0500450 | 0.976641 | 3.247086e-142 | -8.615850e-47 |
| Msa0430170 | Msa0507920 | 0.805036 | 1.620481e-49 | -8.615850e-47 |
| Msa0430170 | Msa0521320 | 0.811484 | 6.842720e-51 | -8.615850e-47 |
| Msa0430170 | Msa0524800 | 0.838918 | 2.160851e-57 | -8.615850e-47 |
| Msa0430170 | Msa0525000 | 0.829640 | 4.596660e-55 | -8.615850e-47 |
| Msa0430170 | Msa0541740 | 0.832067 | 1.167753e-55 | -8.615850e-47 |
| Msa0430170 | Msa0554300 | 0.815113 | 1.091784e-51 | -8.615850e-47 |
| Msa0430170 | Msa0557850 | 0.826578 | 2.511675e-54 | -8.615850e-47 |
| Msa0430170 | Msa0561560 | 0.817395 | 3.371197e-52 | -8.615850e-47 |
| Msa0430170 | Msa0564980 | 0.851426 | 8.944629e-61 | -8.615850e-47 |
| Msa0430170 | Msa0570010 | 0.831598 | 1.524352e-55 | -8.615850e-47 |
| Msa0430170 | Msa0571350 | 0.804599 | 1.999927e-49 | -8.615850e-47 |
| Msa0430170 | Msa0608350 | 0.821114 | 4.794447e-53 | -8.615850e-47 |
| Msa0430170 | Msa0612520 | 0.848062 | 7.784170e-60 | -8.615850e-47 |
| Msa0430170 | Msa0648760 | 0.804320 | 2.285901e-49 | -8.615850e-47 |
| Msa0430170 | Msa0653160 | 0.832374 | 9.806521e-56 | -8.615850e-47 |
| Msa0430170 | Msa0654740 | 0.800373 | 1.485941e-48 | -8.615850e-47 |
| Msa0430170 | Msa0657210 | 0.809822 | 1.564646e-50 | -8.615850e-47 |
| Msa0430170 | Msa0660260 | 0.803858 | 2.852684e-49 | -8.615850e-47 |
| Msa0430170 | Msa0688620 | 0.839285 | 1.736683e-57 | -8.615850e-47 |
| Msa0430170 | Msa0690320 | 0.803686 | 3.096938e-49 | -8.615850e-47 |
| Msa0430170 | Msa0691270 | 0.823100 | 1.661040e-53 | -8.615850e-47 |
| Msa0430170 | Msa0695560 | 0.822681 | 2.080354e-53 | -8.615850e-47 |
| Msa0430170 | Msa0701250 | 0.828875 | 7.050536e-55 | -8.615850e-47 |
| Msa0430170 | Msa0749190 | 0.840684 | 7.495069e-58 | -8.615850e-47 |
| Msa0430170 | Msa0750520 | 0.841196 | 5.503578e-58 | -8.615850e-47 |
| Msa0430170 | Msa0827420 | 0.801329 | 9.481040e-49 | -8.615850e-47 |
| Msa0430170 | Msa0901150 | 0.828433 | 9.014690e-55 | -8.615850e-47 |
| Msa0430170 | Msa0926080 | 0.807287 | 5.441030e-50 | -8.615850e-47 |
| Msa0430170 | Msa0965470 | 0.802612 | 5.165247e-49 | -8.615850e-47 |
| Msa0430170 | Msa0966710 | 0.840001 | 1.131024e-57 | -8.615850e-47 |
| Msa0430170 | Msa1000970 | 0.849537 | 3.034272e-60 | -8.615850e-47 |
| Msa0430170 | Msa1008850 | 0.810157 | 1.325277e-50 | -8.615850e-47 |
| Msa0430170 | Msa1060900 | 0.803798 | 2.935718e-49 | -8.615850e-47 |
| Msa0430170 | Msa1071410 | 0.839473 | 1.551713e-57 | -8.615850e-47 |
| Msa0430170 | Msa1076020 | 0.802225 | 6.205220e-49 | -8.615850e-47 |
| Msa0430170 | Msa1078880 | 0.820870 | 5.458309e-53 | -8.615850e-47 |
| Msa0430170 | Msa1078970 | 0.822102 | 2.834246e-53 | -8.615850e-47 |
| Msa0430170 | Msa1079640 | 0.816754 | 4.697928e-52 | -8.615850e-47 |
| Msa0430170 | Msa1082380 | 0.807573 | 4.731857e-50 | -8.615850e-47 |
| Msa0430170 | Msa1130780 | 0.816871 | 4.423392e-52 | -8.615850e-47 |
| Msa0430170 | Msa1138800 | 0.800458 | 1.428034e-48 | -8.615850e-47 |
| Msa0430170 | Msa1169190 | 0.818742 | 1.672754e-52 | -8.615850e-47 |
| Msa0430170 | Msa1212700 | 0.825275 | 5.121500e-54 | -8.615850e-47 |
| Msa0430170 | Msa1212920 | 0.818692 | 1.716596e-52 | -8.615850e-47 |
| Msa0430170 | Msa1219770 | 0.803612 | 3.207769e-49 | -8.615850e-47 |
| Msa0430170 | Msa1228580 | 0.802862 | 4.587036e-49 | -8.615850e-47 |
| Msa0430170 | Msa1228630 | 0.817333 | 3.482879e-52 | -8.615850e-47 |
| Msa0430170 | Msa1262570 | 0.801963 | 7.025145e-49 | -8.615850e-47 |
| Msa0430170 | Msa1266690 | 0.811188 | 7.930935e-51 | -8.615850e-47 |
| Msa0430170 | Msa1267930 | 0.829005 | 6.557745e-55 | -8.615850e-47 |
| Msa0430170 | Msa1294790 | 0.800182 | 1.625291e-48 | -8.615850e-47 |
| Msa0430170 | Msa1296330 | 0.817397 | 3.368816e-52 | -8.615850e-47 |
| Msa0430170 | Msa1299980 | 0.837404 | 5.302832e-57 | -8.615850e-47 |
| Msa0430170 | Msa1308850 | 0.813458 | 2.534233e-51 | -8.615850e-47 |
| Msa0430170 | Msa1331650 | 0.824346 | 8.485625e-54 | -8.615850e-47 |
| Msa0430170 | Msa1333360 | 0.806165 | 9.391765e-50 | -8.615850e-47 |
| Msa0430170 | Msa1341750 | 0.805121 | 1.555311e-49 | -8.615850e-47 |
| Msa0430170 | Msa1342810 | 0.832654 | 8.358130e-56 | -8.615850e-47 |
| Msa0430170 | Msa1361930 | 0.804219 | 2.399437e-49 | -8.615850e-47 |
| Msa0430170 | Msa1381800 | 0.834253 | 3.335272e-56 | -8.615850e-47 |
| Msa0430170 | Msa1389820 | 0.805442 | 1.332426e-49 | -8.615850e-47 |
| Msa0430170 | Msa1417930 | 0.804531 | 2.066039e-49 | -8.615850e-47 |
| Msa0281540 | Msa0430170 | 0.806096 | 9.708837e-50 | -8.615850e-47 |
| Msa0314080 | Msa0430170 | 0.802181 | 6.336028e-49 | -8.615850e-47 |
| Msa0320580 | Msa0430170 | 0.800864 | 1.179798e-48 | -8.615850e-47 |
| Msa0344110 | Msa0430170 | 0.800816 | 1.206922e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0430170 | MtrunA17_Chr3g0134031 | 96.247 | 373 | 13 | 1 | 1 | 372 | 1 | 373 | 0.0 | 743 |
| Msa0430170 | MtrunA17_Chr5g0441531 | 47.337 | 338 | 87 | 11 | 1 | 335 | 1 | 250 | 1.42e-87 | 265 |
| Msa0430170 | MtrunA17_Chr5g0397881 | 47.391 | 230 | 107 | 5 | 1 | 228 | 1 | 218 | 6.53e-59 | 194 |
| Msa0430170 | MtrunA17_Chr6g0472421 | 46.429 | 224 | 89 | 5 | 15 | 227 | 24 | 227 | 2.34e-55 | 185 |
| Msa0430170 | MtrunA17_Chr5g0402291 | 44.796 | 221 | 85 | 5 | 17 | 229 | 2 | 193 | 4.25e-51 | 172 |
| Msa0430170 | MtrunA17_Chr1g0203601 | 42.326 | 215 | 95 | 2 | 16 | 229 | 10 | 196 | 5.33e-51 | 172 |
| Msa0430170 | MtrunA17_Chr7g0257331 | 39.744 | 234 | 91 | 5 | 9 | 237 | 2 | 190 | 1.27e-47 | 161 |
| Msa0430170 | MtrunA17_Chr6g0467041 | 74.194 | 93 | 24 | 0 | 23 | 115 | 21 | 113 | 2.80e-46 | 160 |
| Msa0430170 | MtrunA17_Chr8g0375041 | 40.278 | 216 | 83 | 4 | 17 | 229 | 2 | 174 | 5.92e-45 | 155 |
| Msa0430170 | MtrunA17_Chr5g0410881 | 72.632 | 95 | 26 | 0 | 21 | 115 | 29 | 123 | 2.58e-44 | 159 |
| Msa0430170 | MtrunA17_Chr7g0260331 | 69.388 | 98 | 30 | 0 | 18 | 115 | 43 | 140 | 3.19e-43 | 154 |
| Msa0430170 | MtrunA17_Chr8g0378061 | 72.527 | 91 | 25 | 0 | 25 | 115 | 23 | 113 | 1.44e-41 | 152 |
| Msa0430170 | MtrunA17_Chr1g0204741 | 65.049 | 103 | 36 | 0 | 18 | 120 | 34 | 136 | 6.68e-41 | 146 |
| Msa0430170 | MtrunA17_Chr8g0379701 | 64.646 | 99 | 34 | 1 | 17 | 115 | 6 | 103 | 1.70e-39 | 144 |
| Msa0430170 | MtrunA17_Chr4g0039891 | 42.487 | 193 | 63 | 4 | 24 | 216 | 12 | 156 | 7.99e-39 | 144 |
| Msa0430170 | MtrunA17_Chr1g0185131 | 64.078 | 103 | 36 | 1 | 22 | 123 | 30 | 132 | 3.56e-38 | 140 |
| Msa0430170 | MtrunA17_Chr4g0071051 | 59.091 | 110 | 44 | 1 | 18 | 126 | 95 | 204 | 1.66e-37 | 139 |
| Msa0430170 | MtrunA17_Chr6g0485571 | 62.105 | 95 | 36 | 0 | 21 | 115 | 8 | 102 | 9.39e-37 | 136 |
| Msa0430170 | MtrunA17_Chr3g0135831 | 56.757 | 111 | 43 | 1 | 18 | 123 | 40 | 150 | 1.72e-36 | 136 |
| Msa0430170 | MtrunA17_Chr2g0330821 | 65.957 | 94 | 32 | 0 | 22 | 115 | 77 | 170 | 3.80e-36 | 134 |
| Msa0430170 | MtrunA17_Chr2g0284481 | 61.000 | 100 | 38 | 1 | 17 | 116 | 9 | 107 | 4.66e-36 | 135 |
| Msa0430170 | MtrunA17_Chr4g0047421 | 58.000 | 100 | 38 | 1 | 21 | 116 | 30 | 129 | 1.62e-34 | 126 |
| Msa0430170 | MtrunA17_Chr8g0392001 | 62.766 | 94 | 34 | 1 | 23 | 115 | 21 | 114 | 4.27e-33 | 127 |
| Msa0430170 | MtrunA17_Chr1g0179321 | 66.667 | 60 | 20 | 0 | 24 | 83 | 49 | 108 | 2.63e-22 | 90.9 |
| Msa0430170 | MtrunA17_Chr4g0023771 | 56.923 | 65 | 28 | 0 | 17 | 81 | 8 | 72 | 3.65e-18 | 79.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0430170 | AT1G46264.1 | 55.443 | 395 | 104 | 14 | 1 | 371 | 1 | 347 | 2.53e-120 | 352 |
| Msa0430170 | AT4G11660.1 | 49.533 | 214 | 105 | 2 | 16 | 227 | 51 | 263 | 9.73e-60 | 197 |
| Msa0430170 | AT5G62020.1 | 44.726 | 237 | 109 | 4 | 17 | 253 | 16 | 230 | 3.18e-58 | 191 |
| Msa0430170 | AT4G36990.1 | 45.794 | 214 | 89 | 2 | 17 | 230 | 7 | 193 | 6.71e-54 | 179 |
| Msa0430170 | AT1G32330.2 | 43.627 | 204 | 54 | 3 | 21 | 216 | 34 | 184 | 1.27e-45 | 163 |
| Msa0430170 | AT1G32330.1 | 43.627 | 204 | 54 | 3 | 21 | 216 | 34 | 184 | 1.33e-45 | 163 |
| Msa0430170 | AT2G41690.1 | 41.905 | 210 | 89 | 5 | 22 | 228 | 38 | 217 | 4.69e-45 | 155 |
| Msa0430170 | AT4G17750.1 | 70.707 | 99 | 29 | 0 | 20 | 118 | 48 | 146 | 4.89e-45 | 162 |
| Msa0430170 | AT3G22830.1 | 67.000 | 100 | 33 | 0 | 18 | 117 | 55 | 154 | 5.47e-42 | 152 |
| Msa0430170 | AT3G02990.1 | 61.261 | 111 | 39 | 2 | 8 | 115 | 5 | 114 | 2.41e-40 | 149 |
| Msa0430170 | AT5G03720.2 | 67.677 | 99 | 32 | 0 | 24 | 122 | 55 | 153 | 2.94e-40 | 147 |
| Msa0430170 | AT5G03720.1 | 67.677 | 99 | 32 | 0 | 24 | 122 | 55 | 153 | 2.94e-40 | 147 |
| Msa0430170 | AT5G16820.1 | 68.367 | 98 | 30 | 1 | 20 | 117 | 24 | 120 | 1.40e-39 | 147 |
| Msa0430170 | AT5G16820.2 | 68.367 | 98 | 30 | 1 | 20 | 117 | 24 | 120 | 1.40e-39 | 147 |
| Msa0430170 | AT5G43840.1 | 64.356 | 101 | 36 | 0 | 22 | 122 | 17 | 117 | 2.89e-39 | 141 |
| Msa0430170 | AT2G26150.1 | 65.957 | 94 | 32 | 0 | 22 | 115 | 42 | 135 | 1.99e-38 | 140 |
| Msa0430170 | AT2G26150.4 | 65.957 | 94 | 32 | 0 | 22 | 115 | 42 | 135 | 1.99e-38 | 140 |
| Msa0430170 | AT3G24520.1 | 62.245 | 98 | 37 | 0 | 21 | 118 | 14 | 111 | 6.23e-38 | 139 |
| Msa0430170 | AT4G13980.1 | 67.033 | 91 | 30 | 0 | 25 | 115 | 24 | 114 | 1.07e-37 | 141 |
| Msa0430170 | AT3G51910.1 | 61.856 | 97 | 37 | 0 | 18 | 114 | 23 | 119 | 3.04e-37 | 135 |
| Msa0430170 | AT3G63350.1 | 60.825 | 97 | 38 | 0 | 18 | 114 | 22 | 118 | 1.09e-35 | 132 |
| Msa0430170 | AT5G54070.1 | 59.341 | 91 | 37 | 0 | 24 | 114 | 71 | 161 | 5.28e-34 | 129 |
| Msa0430170 | AT4G18880.1 | 64.646 | 99 | 34 | 1 | 17 | 115 | 9 | 106 | 1.78e-31 | 123 |
| Msa0430170 | AT1G67970.1 | 57.732 | 97 | 40 | 1 | 23 | 118 | 18 | 114 | 6.76e-31 | 121 |
| Msa0430170 | AT5G45710.3 | 59.783 | 92 | 37 | 0 | 24 | 115 | 13 | 104 | 2.99e-30 | 119 |
| Msa0430170 | AT5G45710.1 | 59.783 | 92 | 37 | 0 | 24 | 115 | 13 | 104 | 2.99e-30 | 119 |
| Msa0430170 | AT4G18870.1 | 42.553 | 94 | 51 | 1 | 18 | 108 | 137 | 230 | 1.17e-20 | 91.3 |
| Msa0430170 | AT4G18870.1 | 44.186 | 86 | 43 | 3 | 25 | 108 | 14 | 96 | 3.45e-16 | 78.6 |
| Msa0430170 | AT1G77570.1 | 38.636 | 88 | 49 | 3 | 25 | 108 | 27 | 113 | 2.27e-12 | 64.7 |
Find 78 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTTTGTTTCCAAACTATT+TGG | 0.202751 | 3_2:+81803674 | None:intergenic |
| AAACAAGGCTCGTTTGGTTT+TGG | 0.245774 | 3_2:-81803657 | Msa0430170:CDS |
| TGAATCATCATCACTGAAAA+TGG | 0.259439 | 3_2:-81804875 | Msa0430170:exon |
| GGATTATTAGATCCACATTC+AGG | 0.261808 | 3_2:+81803695 | None:intergenic |
| TGAAGACGAGTCATATGTTT+AGG | 0.266459 | 3_2:+81803869 | None:intergenic |
| CTAACTCTAGTGTTTGAAAA+TGG | 0.272288 | 3_2:+81804277 | None:intergenic |
| AAGCCAATGAACCAGCTTTC+GGG | 0.281382 | 3_2:-81803908 | Msa0430170:CDS |
| ATCAACAAGTTGGTATGTTT+TGG | 0.282286 | 3_2:+81804777 | None:intergenic |
| CTATTGATGTAGGTGGATTT+TGG | 0.289446 | 3_2:-81803324 | Msa0430170:three_prime_UTR |
| TTAACTTCATCATTTGTTAA+TGG | 0.296353 | 3_2:-81804193 | Msa0430170:CDS |
| GAAGTTGTGCATTTAAAGTT+TGG | 0.305380 | 3_2:+81803270 | None:intergenic |
| TTAACAAATGATGAAGTTAA+TGG | 0.309297 | 3_2:+81804196 | None:intergenic |
| ATGAGAATCCTAAGCTAGTT+AGG | 0.314254 | 3_2:-81803563 | Msa0430170:three_prime_UTR |
| TTGTTGTGTTTGAAGTAGTT+AGG | 0.319993 | 3_2:+81804664 | None:intergenic |
| ATCTAATAATCCAAATAGTT+TGG | 0.322798 | 3_2:-81803684 | Msa0430170:CDS |
| AGGAGGTCTCTAGCAAATTC+TGG | 0.338598 | 3_2:+81804688 | None:intergenic |
| ATGACTCCACCTTCGTTGTT+TGG | 0.343318 | 3_2:-81804717 | Msa0430170:CDS |
| TAGTTGTTTGTTGCTGTTGT+TGG | 0.344004 | 3_2:+81804163 | None:intergenic |
| AAAGCCAATGAACCAGCTTT+CGG | 0.347409 | 3_2:-81803909 | Msa0430170:CDS |
| TGTTGTGTTTGAAGTAGTTA+GGG | 0.361431 | 3_2:+81804665 | None:intergenic |
| CACAGATCACATCGTCTCTT+GGG | 0.368339 | 3_2:-81804746 | Msa0430170:CDS |
| GGAAACAAACAAGGCTCGTT+TGG | 0.378669 | 3_2:-81803663 | Msa0430170:CDS |
| GAGCTTCTTGATGTGTTTGT+TGG | 0.386154 | 3_2:+81803806 | None:intergenic |
| GAAGATCATGATGATATTGA+TGG | 0.395870 | 3_2:-81803421 | Msa0430170:three_prime_UTR |
| ATTGAGAACAAAGATAATAT+TGG | 0.400288 | 3_2:+81803347 | None:intergenic |
| GAAGACGAGTCATATGTTTA+GGG | 0.405370 | 3_2:+81803870 | None:intergenic |
| TGTTCTCAATCTATTGATGT+AGG | 0.411507 | 3_2:-81803334 | Msa0430170:three_prime_UTR |
| TAAGAGTTACTTGGAGCTAC+TGG | 0.420379 | 3_2:+81804007 | None:intergenic |
| ACATTACCACCACCATTCAT+AGG | 0.425778 | 3_2:+81803944 | None:intergenic |
| TAGCCCGAAAGCTGGTTCAT+TGG | 0.429834 | 3_2:+81803905 | None:intergenic |
| CCACAGATCACATCGTCTCT+TGG | 0.431871 | 3_2:-81804747 | Msa0430170:CDS |
| TTGTTCATCAGAGTATTCAT+TGG | 0.454805 | 3_2:+81804243 | None:intergenic |
| CCACCACCATTCATAGGAGT+TGG | 0.459985 | 3_2:+81803950 | None:intergenic |
| CTGATGAACAAGTCAACAAC+TGG | 0.462821 | 3_2:-81804231 | Msa0430170:CDS |
| AGCTCAATAACAATGGTTGA+AGG | 0.469701 | 3_2:-81803788 | Msa0430170:CDS |
| ACATCACAGCCACAACAAAC+AGG | 0.483395 | 3_2:-81804352 | Msa0430170:CDS |
| GATGAAGAGTAAGAGTTACT+TGG | 0.490480 | 3_2:+81803998 | None:intergenic |
| TTAGCAAACTCCCATCTGTC+AGG | 0.497806 | 3_2:+81804430 | None:intergenic |
| GAAAATGGAAAGAAACTTGG+TGG | 0.498648 | 3_2:+81804292 | None:intergenic |
| GATTATTAGATCCACATTCA+GGG | 0.505417 | 3_2:+81803696 | None:intergenic |
| GTGGAACATTGTGATGCTGC+TGG | 0.507886 | 3_2:+81804311 | None:intergenic |
| TGTGTTTGAAGTAGTTAGGG+AGG | 0.509850 | 3_2:+81804668 | None:intergenic |
| TCATCAGAGTATTCATTGGA+TGG | 0.511281 | 3_2:+81804247 | None:intergenic |
| GAAAGATTGTACCTGACAGA+TGG | 0.519136 | 3_2:-81804441 | Msa0430170:CDS |
| GTTTGAAGTAGTTAGGGAGG+AGG | 0.523740 | 3_2:+81804671 | None:intergenic |
| TCAAATCCAACTCCTATGAA+TGG | 0.530340 | 3_2:-81803956 | Msa0430170:CDS |
| AATTGTAATAGCCCGAAAGC+TGG | 0.534218 | 3_2:+81803897 | None:intergenic |
| TCTCAATCTATTGATGTAGG+TGG | 0.534364 | 3_2:-81803331 | Msa0430170:three_prime_UTR |
| TTTGAAAATGGAAAGAAACT+TGG | 0.548152 | 3_2:+81804289 | None:intergenic |
| TGGTGGTGGTAATGTTTCAA+TGG | 0.548976 | 3_2:-81803936 | Msa0430170:CDS |
| ACTTCATCATTTGTTAATGG+AGG | 0.552014 | 3_2:-81804190 | Msa0430170:CDS |
| CCACAAAATCAATCCCATCA+TGG | 0.552202 | 3_2:-81803845 | Msa0430170:CDS |
| AGTTCACATTCATACCATGA+TGG | 0.552494 | 3_2:+81803831 | None:intergenic |
| ATGTTGATTCCTGTTTGTTG+TGG | 0.553850 | 3_2:+81804343 | None:intergenic |
| AAAAGAGTGCACCCTGAATG+TGG | 0.555827 | 3_2:-81803707 | Msa0430170:CDS |
| TTCAATAACACACACAACAC+TGG | 0.558866 | 3_2:+81804894 | None:intergenic |
| ACAAATGATGAAGTTAATGG+TGG | 0.561209 | 3_2:+81804199 | None:intergenic |
| ACACTGGTTTAGAGAGGGAG+AGG | 0.565479 | 3_2:+81804910 | None:intergenic |
| GTTCACATTCATACCATGAT+GGG | 0.572426 | 3_2:+81803832 | None:intergenic |
| CCAACTCCTATGAATGGTGG+TGG | 0.572594 | 3_2:-81803950 | Msa0430170:CDS |
| AAAGATTGTACCTGACAGAT+GGG | 0.574158 | 3_2:-81804440 | Msa0430170:CDS |
| GCTCAATAACAATGGTTGAA+GGG | 0.590591 | 3_2:-81803787 | Msa0430170:CDS |
| GGAGTTGGATTTGAAGCTTG+TGG | 0.599678 | 3_2:+81803965 | None:intergenic |
| AAAACTAACTAACAAGTGGA+AGG | 0.604739 | 3_2:+81803593 | None:intergenic |
| TGGTTGGATCATCAACAAGT+TGG | 0.622309 | 3_2:+81804767 | None:intergenic |
| CACACAACACTGGTTTAGAG+AGG | 0.626575 | 3_2:+81804904 | None:intergenic |
| ACAGATCACATCGTCTCTTG+GGG | 0.629510 | 3_2:-81804745 | Msa0430170:CDS |
| ATCAAGAAGCTCAATAACAA+TGG | 0.631659 | 3_2:-81803795 | Msa0430170:CDS |
| GAGACGATGTGATCTGTGGT+TGG | 0.633776 | 3_2:+81804751 | None:intergenic |
| AAATAGTTTGGAAACAAACA+AGG | 0.638741 | 3_2:-81803672 | Msa0430170:CDS |
| AGGACGCCAAACAACGAAGG+TGG | 0.642419 | 3_2:+81804711 | None:intergenic |
| ACACAACACTGGTTTAGAGA+GGG | 0.651513 | 3_2:+81804905 | None:intergenic |
| AATCCAACTCCTATGAATGG+TGG | 0.654630 | 3_2:-81803953 | Msa0430170:CDS |
| ACTAACTAACAAGTGGAAGG+AGG | 0.655564 | 3_2:+81803596 | None:intergenic |
| CTTCTACTAGACAACTGTGA+AGG | 0.669455 | 3_2:-81804850 | Msa0430170:CDS |
| AGGTCTCTAGCAAATTCTGG+AGG | 0.693279 | 3_2:+81804691 | None:intergenic |
| TGGAGGACGCCAAACAACGA+AGG | 0.695849 | 3_2:+81804708 | None:intergenic |
| CCAAGAGACGATGTGATCTG+TGG | 0.707530 | 3_2:+81804747 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTCTTTGTTTTTT+AGG | - | chr3_2:81803760-81803779 | Msa0430170:CDS | 10.0% |
| !!! | TATTTTTTCTTTGTTTTTTA+GGG | - | chr3_2:81803761-81803780 | Msa0430170:CDS | 10.0% |
| !!! | TTATTTTTTCTTTGTTTTTT+AGG | - | chr3_2:81803760-81803779 | Msa0430170:CDS | 10.0% |
| !!! | TATTTTTTCTTTGTTTTTTA+GGG | - | chr3_2:81803761-81803780 | Msa0430170:CDS | 10.0% |
| !! | GCTAATGAATATTTCAAAAA+AGG | - | chr3_2:81803818-81803837 | Msa0430170:CDS | 20.0% |
| !! | TTAACAAATGATGAAGTTAA+TGG | + | chr3_2:81804037-81804056 | None:intergenic | 20.0% |
| !!! | TTAACTTCATCATTTGTTAA+TGG | - | chr3_2:81804037-81804056 | Msa0430170:CDS | 20.0% |
| !! | ATCTAATAATCCAAATAGTT+TGG | - | chr3_2:81804546-81804565 | Msa0430170:intron | 20.0% |
| !!! | AAAAGATCATGATTTTGATT+TGG | - | chr3_2:81804597-81804616 | Msa0430170:intron | 20.0% |
| !!! | AAAGATCATGATTTTGATTT+GGG | - | chr3_2:81804598-81804617 | Msa0430170:intron | 20.0% |
| !! | ATTGAGAACAAAGATAATAT+TGG | + | chr3_2:81804886-81804905 | None:intergenic | 20.0% |
| !! | GCTAATGAATATTTCAAAAA+AGG | - | chr3_2:81803818-81803837 | Msa0430170:CDS | 20.0% |
| !! | TTAACAAATGATGAAGTTAA+TGG | + | chr3_2:81804037-81804056 | None:intergenic | 20.0% |
| !!! | TTAACTTCATCATTTGTTAA+TGG | - | chr3_2:81804037-81804056 | Msa0430170:CDS | 20.0% |
| !! | ATCTAATAATCCAAATAGTT+TGG | - | chr3_2:81804546-81804565 | Msa0430170:intron | 20.0% |
| !!! | AAAAGATCATGATTTTGATT+TGG | - | chr3_2:81804597-81804616 | Msa0430170:intron | 20.0% |
| !!! | AAAGATCATGATTTTGATTT+GGG | - | chr3_2:81804598-81804617 | Msa0430170:intron | 20.0% |
| !! | ATTGAGAACAAAGATAATAT+TGG | + | chr3_2:81804886-81804905 | None:intergenic | 20.0% |
| ! | TTTGAAAATGGAAAGAAACT+TGG | + | chr3_2:81803944-81803963 | None:intergenic | 25.0% |
| ! | TTGTTTGTTTCCAAACTATT+TGG | + | chr3_2:81804559-81804578 | None:intergenic | 25.0% |
| ! | AAATAGTTTGGAAACAAACA+AGG | - | chr3_2:81804558-81804577 | Msa0430170:intron | 25.0% |
| ! | AAGAAAAACTAACTAACAAG+TGG | + | chr3_2:81804644-81804663 | None:intergenic | 25.0% |
| !! | AAAAAAAACCTAACTAGCTT+AGG | + | chr3_2:81804678-81804697 | None:intergenic | 25.0% |
| ! | TTTGAAAATGGAAAGAAACT+TGG | + | chr3_2:81803944-81803963 | None:intergenic | 25.0% |
| ! | TTGTTTGTTTCCAAACTATT+TGG | + | chr3_2:81804559-81804578 | None:intergenic | 25.0% |
| ! | AAATAGTTTGGAAACAAACA+AGG | - | chr3_2:81804558-81804577 | Msa0430170:intron | 25.0% |
| ! | AAGAAAAACTAACTAACAAG+TGG | + | chr3_2:81804644-81804663 | None:intergenic | 25.0% |
| !! | AAAAAAAACCTAACTAGCTT+AGG | + | chr3_2:81804678-81804697 | None:intergenic | 25.0% |
| TGAATCATCATCACTGAAAA+TGG | - | chr3_2:81803355-81803374 | Msa0430170:three_prime_UTR | 30.0% | |
| !!! | ATCAACAAGTTGGTATGTTT+TGG | + | chr3_2:81803456-81803475 | None:intergenic | 30.0% |
| ! | TGTTGTGTTTGAAGTAGTTA+GGG | + | chr3_2:81803568-81803587 | None:intergenic | 30.0% |
| ! | TTGTTGTGTTTGAAGTAGTT+AGG | + | chr3_2:81803569-81803588 | None:intergenic | 30.0% |
| CTAACTCTAGTGTTTGAAAA+TGG | + | chr3_2:81803956-81803975 | None:intergenic | 30.0% | |
| ! | TTGTTCATCAGAGTATTCAT+TGG | + | chr3_2:81803990-81804009 | None:intergenic | 30.0% |
| ACAAATGATGAAGTTAATGG+TGG | + | chr3_2:81804034-81804053 | None:intergenic | 30.0% | |
| ! | ACTTCATCATTTGTTAATGG+AGG | - | chr3_2:81804040-81804059 | Msa0430170:CDS | 30.0% |
| ATCAAGAAGCTCAATAACAA+TGG | - | chr3_2:81804435-81804454 | Msa0430170:CDS | 30.0% | |
| GATTATTAGATCCACATTCA+GGG | + | chr3_2:81804537-81804556 | None:intergenic | 30.0% | |
| AAAACTAACTAACAAGTGGA+AGG | + | chr3_2:81804640-81804659 | None:intergenic | 30.0% | |
| !!! | GATTATCAAGTTTTGAGTCA+CGG | - | chr3_2:81804777-81804796 | Msa0430170:CDS | 30.0% |
| GAAGATCATGATGATATTGA+TGG | - | chr3_2:81804809-81804828 | Msa0430170:CDS | 30.0% | |
| TGTTCTCAATCTATTGATGT+AGG | - | chr3_2:81804896-81804915 | Msa0430170:five_prime_UTR | 30.0% | |
| TGAATCATCATCACTGAAAA+TGG | - | chr3_2:81803355-81803374 | Msa0430170:three_prime_UTR | 30.0% | |
| !!! | ATCAACAAGTTGGTATGTTT+TGG | + | chr3_2:81803456-81803475 | None:intergenic | 30.0% |
| ! | TGTTGTGTTTGAAGTAGTTA+GGG | + | chr3_2:81803568-81803587 | None:intergenic | 30.0% |
| ! | TTGTTGTGTTTGAAGTAGTT+AGG | + | chr3_2:81803569-81803588 | None:intergenic | 30.0% |
| CTAACTCTAGTGTTTGAAAA+TGG | + | chr3_2:81803956-81803975 | None:intergenic | 30.0% | |
| ! | TTGTTCATCAGAGTATTCAT+TGG | + | chr3_2:81803990-81804009 | None:intergenic | 30.0% |
| ACAAATGATGAAGTTAATGG+TGG | + | chr3_2:81804034-81804053 | None:intergenic | 30.0% | |
| ! | ACTTCATCATTTGTTAATGG+AGG | - | chr3_2:81804040-81804059 | Msa0430170:CDS | 30.0% |
| ATCAAGAAGCTCAATAACAA+TGG | - | chr3_2:81804435-81804454 | Msa0430170:CDS | 30.0% | |
| GATTATTAGATCCACATTCA+GGG | + | chr3_2:81804537-81804556 | None:intergenic | 30.0% | |
| AAAACTAACTAACAAGTGGA+AGG | + | chr3_2:81804640-81804659 | None:intergenic | 30.0% | |
| !!! | GATTATCAAGTTTTGAGTCA+CGG | - | chr3_2:81804777-81804796 | Msa0430170:CDS | 30.0% |
| GAAGATCATGATGATATTGA+TGG | - | chr3_2:81804809-81804828 | Msa0430170:CDS | 30.0% | |
| TGTTCTCAATCTATTGATGT+AGG | - | chr3_2:81804896-81804915 | Msa0430170:five_prime_UTR | 30.0% | |
| TTCAATAACACACACAACAC+TGG | + | chr3_2:81803339-81803358 | None:intergenic | 35.0% | |
| GAAGAGATGATTGCTTACAT+AGG | + | chr3_2:81803621-81803640 | None:intergenic | 35.0% | |
| AAAGATTGTACCTGACAGAT+GGG | - | chr3_2:81803790-81803809 | Msa0430170:CDS | 35.0% | |
| !! | ATGTTGATTCCTGTTTGTTG+TGG | + | chr3_2:81803890-81803909 | None:intergenic | 35.0% |
| GAAAATGGAAAGAAACTTGG+TGG | + | chr3_2:81803941-81803960 | None:intergenic | 35.0% | |
| ! | TCATCAGAGTATTCATTGGA+TGG | + | chr3_2:81803986-81804005 | None:intergenic | 35.0% |
| ! | TAGTTGTTTGTTGCTGTTGT+TGG | + | chr3_2:81804070-81804089 | None:intergenic | 35.0% |
| GATGAAGAGTAAGAGTTACT+TGG | + | chr3_2:81804235-81804254 | None:intergenic | 35.0% | |
| TCAAATCCAACTCCTATGAA+TGG | - | chr3_2:81804274-81804293 | Msa0430170:CDS | 35.0% | |
| GAAGACGAGTCATATGTTTA+GGG | + | chr3_2:81804363-81804382 | None:intergenic | 35.0% | |
| TGAAGACGAGTCATATGTTT+AGG | + | chr3_2:81804364-81804383 | None:intergenic | 35.0% | |
| GTTCACATTCATACCATGAT+GGG | + | chr3_2:81804401-81804420 | None:intergenic | 35.0% | |
| AGTTCACATTCATACCATGA+TGG | + | chr3_2:81804402-81804421 | None:intergenic | 35.0% | |
| AGCTCAATAACAATGGTTGA+AGG | - | chr3_2:81804442-81804461 | Msa0430170:CDS | 35.0% | |
| GCTCAATAACAATGGTTGAA+GGG | - | chr3_2:81804443-81804462 | Msa0430170:CDS | 35.0% | |
| GGATTATTAGATCCACATTC+AGG | + | chr3_2:81804538-81804557 | None:intergenic | 35.0% | |
| ATGAGAATCCTAAGCTAGTT+AGG | - | chr3_2:81804667-81804686 | Msa0430170:CDS | 35.0% | |
| TCTCAATCTATTGATGTAGG+TGG | - | chr3_2:81804899-81804918 | Msa0430170:five_prime_UTR | 35.0% | |
| !! | CTATTGATGTAGGTGGATTT+TGG | - | chr3_2:81804906-81804925 | Msa0430170:five_prime_UTR | 35.0% |
| TTCAATAACACACACAACAC+TGG | + | chr3_2:81803339-81803358 | None:intergenic | 35.0% | |
| GAAGAGATGATTGCTTACAT+AGG | + | chr3_2:81803621-81803640 | None:intergenic | 35.0% | |
| AAAGATTGTACCTGACAGAT+GGG | - | chr3_2:81803790-81803809 | Msa0430170:CDS | 35.0% | |
| !! | ATGTTGATTCCTGTTTGTTG+TGG | + | chr3_2:81803890-81803909 | None:intergenic | 35.0% |
| GAAAATGGAAAGAAACTTGG+TGG | + | chr3_2:81803941-81803960 | None:intergenic | 35.0% | |
| ! | TCATCAGAGTATTCATTGGA+TGG | + | chr3_2:81803986-81804005 | None:intergenic | 35.0% |
| ! | TAGTTGTTTGTTGCTGTTGT+TGG | + | chr3_2:81804070-81804089 | None:intergenic | 35.0% |
| GATGAAGAGTAAGAGTTACT+TGG | + | chr3_2:81804235-81804254 | None:intergenic | 35.0% | |
| TCAAATCCAACTCCTATGAA+TGG | - | chr3_2:81804274-81804293 | Msa0430170:CDS | 35.0% | |
| GAAGACGAGTCATATGTTTA+GGG | + | chr3_2:81804363-81804382 | None:intergenic | 35.0% | |
| TGAAGACGAGTCATATGTTT+AGG | + | chr3_2:81804364-81804383 | None:intergenic | 35.0% | |
| GTTCACATTCATACCATGAT+GGG | + | chr3_2:81804401-81804420 | None:intergenic | 35.0% | |
| AGTTCACATTCATACCATGA+TGG | + | chr3_2:81804402-81804421 | None:intergenic | 35.0% | |
| AGCTCAATAACAATGGTTGA+AGG | - | chr3_2:81804442-81804461 | Msa0430170:CDS | 35.0% | |
| GCTCAATAACAATGGTTGAA+GGG | - | chr3_2:81804443-81804462 | Msa0430170:CDS | 35.0% | |
| GGATTATTAGATCCACATTC+AGG | + | chr3_2:81804538-81804557 | None:intergenic | 35.0% | |
| ATGAGAATCCTAAGCTAGTT+AGG | - | chr3_2:81804667-81804686 | Msa0430170:CDS | 35.0% | |
| TCTCAATCTATTGATGTAGG+TGG | - | chr3_2:81804899-81804918 | Msa0430170:five_prime_UTR | 35.0% | |
| !! | CTATTGATGTAGGTGGATTT+TGG | - | chr3_2:81804906-81804925 | Msa0430170:five_prime_UTR | 35.0% |
| !! | ACACAACACTGGTTTAGAGA+GGG | + | chr3_2:81803328-81803347 | None:intergenic | 40.0% |
| CTTCTACTAGACAACTGTGA+AGG | - | chr3_2:81803380-81803399 | Msa0430170:three_prime_UTR | 40.0% | |
| !!! | TGGTATGTTTTGGTGAGGAA+TGG | + | chr3_2:81803446-81803465 | None:intergenic | 40.0% |
| !!! | CAAGTTGGTATGTTTTGGTG+AGG | + | chr3_2:81803451-81803470 | None:intergenic | 40.0% |
| TGGTTGGATCATCAACAAGT+TGG | + | chr3_2:81803466-81803485 | None:intergenic | 40.0% | |
| ! | TGTGTTTGAAGTAGTTAGGG+AGG | + | chr3_2:81803565-81803584 | None:intergenic | 40.0% |
| GAAAGATTGTACCTGACAGA+TGG | - | chr3_2:81803789-81803808 | Msa0430170:CDS | 40.0% | |
| CTGATGAACAAGTCAACAAC+TGG | - | chr3_2:81803999-81804018 | Msa0430170:CDS | 40.0% | |
| TAAGAGTTACTTGGAGCTAC+TGG | + | chr3_2:81804226-81804245 | None:intergenic | 40.0% | |
| AATCCAACTCCTATGAATGG+TGG | - | chr3_2:81804277-81804296 | Msa0430170:CDS | 40.0% | |
| ACATTACCACCACCATTCAT+AGG | + | chr3_2:81804289-81804308 | None:intergenic | 40.0% | |
| !! | TGGTGGTGGTAATGTTTCAA+TGG | - | chr3_2:81804294-81804313 | Msa0430170:CDS | 40.0% |
| AAAGCCAATGAACCAGCTTT+CGG | - | chr3_2:81804321-81804340 | Msa0430170:CDS | 40.0% | |
| AATTGTAATAGCCCGAAAGC+TGG | + | chr3_2:81804336-81804355 | None:intergenic | 40.0% | |
| !! | CCATGATGGGATTGATTTTG+TGG | + | chr3_2:81804388-81804407 | None:intergenic | 40.0% |
| CCACAAAATCAATCCCATCA+TGG | - | chr3_2:81804385-81804404 | Msa0430170:CDS | 40.0% | |
| GAGCTTCTTGATGTGTTTGT+TGG | + | chr3_2:81804427-81804446 | None:intergenic | 40.0% | |
| ! | TGCAGCAAGACTAAGCTTTT+TGG | - | chr3_2:81804481-81804500 | Msa0430170:intron | 40.0% |
| !! | AAACAAGGCTCGTTTGGTTT+TGG | - | chr3_2:81804573-81804592 | Msa0430170:intron | 40.0% |
| ACTAACTAACAAGTGGAAGG+AGG | + | chr3_2:81804637-81804656 | None:intergenic | 40.0% | |
| !!! | TATCAAGTTTTGAGTCACGG+AGG | - | chr3_2:81804780-81804799 | Msa0430170:CDS | 40.0% |
| !! | ACACAACACTGGTTTAGAGA+GGG | + | chr3_2:81803328-81803347 | None:intergenic | 40.0% |
| CTTCTACTAGACAACTGTGA+AGG | - | chr3_2:81803380-81803399 | Msa0430170:three_prime_UTR | 40.0% | |
| !!! | TGGTATGTTTTGGTGAGGAA+TGG | + | chr3_2:81803446-81803465 | None:intergenic | 40.0% |
| !!! | CAAGTTGGTATGTTTTGGTG+AGG | + | chr3_2:81803451-81803470 | None:intergenic | 40.0% |
| TGGTTGGATCATCAACAAGT+TGG | + | chr3_2:81803466-81803485 | None:intergenic | 40.0% | |
| ! | TGTGTTTGAAGTAGTTAGGG+AGG | + | chr3_2:81803565-81803584 | None:intergenic | 40.0% |
| GAAAGATTGTACCTGACAGA+TGG | - | chr3_2:81803789-81803808 | Msa0430170:CDS | 40.0% | |
| CTGATGAACAAGTCAACAAC+TGG | - | chr3_2:81803999-81804018 | Msa0430170:CDS | 40.0% | |
| TAAGAGTTACTTGGAGCTAC+TGG | + | chr3_2:81804226-81804245 | None:intergenic | 40.0% | |
| AATCCAACTCCTATGAATGG+TGG | - | chr3_2:81804277-81804296 | Msa0430170:CDS | 40.0% | |
| ACATTACCACCACCATTCAT+AGG | + | chr3_2:81804289-81804308 | None:intergenic | 40.0% | |
| !! | TGGTGGTGGTAATGTTTCAA+TGG | - | chr3_2:81804294-81804313 | Msa0430170:CDS | 40.0% |
| AAAGCCAATGAACCAGCTTT+CGG | - | chr3_2:81804321-81804340 | Msa0430170:CDS | 40.0% | |
| AATTGTAATAGCCCGAAAGC+TGG | + | chr3_2:81804336-81804355 | None:intergenic | 40.0% | |
| !! | CCATGATGGGATTGATTTTG+TGG | + | chr3_2:81804388-81804407 | None:intergenic | 40.0% |
| CCACAAAATCAATCCCATCA+TGG | - | chr3_2:81804385-81804404 | Msa0430170:CDS | 40.0% | |
| GAGCTTCTTGATGTGTTTGT+TGG | + | chr3_2:81804427-81804446 | None:intergenic | 40.0% | |
| ! | TGCAGCAAGACTAAGCTTTT+TGG | - | chr3_2:81804481-81804500 | Msa0430170:intron | 40.0% |
| !! | AAACAAGGCTCGTTTGGTTT+TGG | - | chr3_2:81804573-81804592 | Msa0430170:intron | 40.0% |
| ACTAACTAACAAGTGGAAGG+AGG | + | chr3_2:81804637-81804656 | None:intergenic | 40.0% | |
| !!! | TATCAAGTTTTGAGTCACGG+AGG | - | chr3_2:81804780-81804799 | Msa0430170:CDS | 40.0% |
| !! | CACACAACACTGGTTTAGAG+AGG | + | chr3_2:81803329-81803348 | None:intergenic | 45.0% |
| ! | TTTTGGTGAGGAATGGAGCT+GGG | + | chr3_2:81803439-81803458 | None:intergenic | 45.0% |
| CACAGATCACATCGTCTCTT+GGG | - | chr3_2:81803484-81803503 | Msa0430170:three_prime_UTR | 45.0% | |
| ACAGATCACATCGTCTCTTG+GGG | - | chr3_2:81803485-81803504 | Msa0430170:three_prime_UTR | 45.0% | |
| ATGACTCCACCTTCGTTGTT+TGG | - | chr3_2:81803513-81803532 | Msa0430170:three_prime_UTR | 45.0% | |
| AGGTCTCTAGCAAATTCTGG+AGG | + | chr3_2:81803542-81803561 | None:intergenic | 45.0% | |
| AGGAGGTCTCTAGCAAATTC+TGG | + | chr3_2:81803545-81803564 | None:intergenic | 45.0% | |
| ! | GTTTGAAGTAGTTAGGGAGG+AGG | + | chr3_2:81803562-81803581 | None:intergenic | 45.0% |
| TAACGAATCGAAGCGACAAG+AGG | + | chr3_2:81803690-81803709 | None:intergenic | 45.0% | |
| TTAGCAAACTCCCATCTGTC+AGG | + | chr3_2:81803803-81803822 | None:intergenic | 45.0% | |
| ACATCACAGCCACAACAAAC+AGG | - | chr3_2:81803878-81803897 | Msa0430170:CDS | 45.0% | |
| ! | GGAGTTGGATTTGAAGCTTG+TGG | + | chr3_2:81804268-81804287 | None:intergenic | 45.0% |
| AAGCCAATGAACCAGCTTTC+GGG | - | chr3_2:81804322-81804341 | Msa0430170:CDS | 45.0% | |
| ! | TTCAGGGTGCACTCTTTTCT+TGG | + | chr3_2:81804521-81804540 | None:intergenic | 45.0% |
| ! | AAAAGAGTGCACCCTGAATG+TGG | - | chr3_2:81804523-81804542 | Msa0430170:intron | 45.0% |
| GGAAACAAACAAGGCTCGTT+TGG | - | chr3_2:81804567-81804586 | Msa0430170:intron | 45.0% | |
| !! | CACACAACACTGGTTTAGAG+AGG | + | chr3_2:81803329-81803348 | None:intergenic | 45.0% |
| ! | TTTTGGTGAGGAATGGAGCT+GGG | + | chr3_2:81803439-81803458 | None:intergenic | 45.0% |
| CACAGATCACATCGTCTCTT+GGG | - | chr3_2:81803484-81803503 | Msa0430170:three_prime_UTR | 45.0% | |
| ACAGATCACATCGTCTCTTG+GGG | - | chr3_2:81803485-81803504 | Msa0430170:three_prime_UTR | 45.0% | |
| ATGACTCCACCTTCGTTGTT+TGG | - | chr3_2:81803513-81803532 | Msa0430170:three_prime_UTR | 45.0% | |
| AGGTCTCTAGCAAATTCTGG+AGG | + | chr3_2:81803542-81803561 | None:intergenic | 45.0% | |
| AGGAGGTCTCTAGCAAATTC+TGG | + | chr3_2:81803545-81803564 | None:intergenic | 45.0% | |
| ! | GTTTGAAGTAGTTAGGGAGG+AGG | + | chr3_2:81803562-81803581 | None:intergenic | 45.0% |
| TAACGAATCGAAGCGACAAG+AGG | + | chr3_2:81803690-81803709 | None:intergenic | 45.0% | |
| TTAGCAAACTCCCATCTGTC+AGG | + | chr3_2:81803803-81803822 | None:intergenic | 45.0% | |
| ACATCACAGCCACAACAAAC+AGG | - | chr3_2:81803878-81803897 | Msa0430170:CDS | 45.0% | |
| ! | GGAGTTGGATTTGAAGCTTG+TGG | + | chr3_2:81804268-81804287 | None:intergenic | 45.0% |
| AAGCCAATGAACCAGCTTTC+GGG | - | chr3_2:81804322-81804341 | Msa0430170:CDS | 45.0% | |
| ! | TTCAGGGTGCACTCTTTTCT+TGG | + | chr3_2:81804521-81804540 | None:intergenic | 45.0% |
| ! | AAAAGAGTGCACCCTGAATG+TGG | - | chr3_2:81804523-81804542 | Msa0430170:intron | 45.0% |
| GGAAACAAACAAGGCTCGTT+TGG | - | chr3_2:81804567-81804586 | Msa0430170:intron | 45.0% | |
| !! | ACACTGGTTTAGAGAGGGAG+AGG | + | chr3_2:81803323-81803342 | None:intergenic | 50.0% |
| !! | GTTTTGGTGAGGAATGGAGC+TGG | + | chr3_2:81803440-81803459 | None:intergenic | 50.0% |
| GAGACGATGTGATCTGTGGT+TGG | + | chr3_2:81803482-81803501 | None:intergenic | 50.0% | |
| CCAAGAGACGATGTGATCTG+TGG | + | chr3_2:81803486-81803505 | None:intergenic | 50.0% | |
| CCACAGATCACATCGTCTCT+TGG | - | chr3_2:81803483-81803502 | Msa0430170:three_prime_UTR | 50.0% | |
| GTGGAACATTGTGATGCTGC+TGG | + | chr3_2:81803922-81803941 | None:intergenic | 50.0% | |
| CCACCACCATTCATAGGAGT+TGG | + | chr3_2:81804283-81804302 | None:intergenic | 50.0% | |
| CCAACTCCTATGAATGGTGG+TGG | - | chr3_2:81804280-81804299 | Msa0430170:CDS | 50.0% | |
| ! | TAGCCCGAAAGCTGGTTCAT+TGG | + | chr3_2:81804328-81804347 | None:intergenic | 50.0% |
| !! | TTTTGAGTCACGGAGGAGCT+AGG | - | chr3_2:81804787-81804806 | Msa0430170:CDS | 50.0% |
| !! | ACACTGGTTTAGAGAGGGAG+AGG | + | chr3_2:81803323-81803342 | None:intergenic | 50.0% |
| !! | GTTTTGGTGAGGAATGGAGC+TGG | + | chr3_2:81803440-81803459 | None:intergenic | 50.0% |
| GAGACGATGTGATCTGTGGT+TGG | + | chr3_2:81803482-81803501 | None:intergenic | 50.0% | |
| CCAAGAGACGATGTGATCTG+TGG | + | chr3_2:81803486-81803505 | None:intergenic | 50.0% | |
| CCACAGATCACATCGTCTCT+TGG | - | chr3_2:81803483-81803502 | Msa0430170:three_prime_UTR | 50.0% | |
| GTGGAACATTGTGATGCTGC+TGG | + | chr3_2:81803922-81803941 | None:intergenic | 50.0% | |
| CCACCACCATTCATAGGAGT+TGG | + | chr3_2:81804283-81804302 | None:intergenic | 50.0% | |
| CCAACTCCTATGAATGGTGG+TGG | - | chr3_2:81804280-81804299 | Msa0430170:CDS | 50.0% | |
| ! | TAGCCCGAAAGCTGGTTCAT+TGG | + | chr3_2:81804328-81804347 | None:intergenic | 50.0% |
| !! | TTTTGAGTCACGGAGGAGCT+AGG | - | chr3_2:81804787-81804806 | Msa0430170:CDS | 50.0% |
| AGGACGCCAAACAACGAAGG+TGG | + | chr3_2:81803522-81803541 | None:intergenic | 55.0% | |
| TGGAGGACGCCAAACAACGA+AGG | + | chr3_2:81803525-81803544 | None:intergenic | 55.0% | |
| AGGACGCCAAACAACGAAGG+TGG | + | chr3_2:81803522-81803541 | None:intergenic | 55.0% | |
| TGGAGGACGCCAAACAACGA+AGG | + | chr3_2:81803525-81803544 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 81803276 | 81804976 | 81803276 | ID=Msa0430170;Name=Msa0430170 |
| chr3_2 | mRNA | 81803276 | 81804976 | 81803276 | ID=Msa0430170-mRNA-1;Parent=Msa0430170;Name=Msa0430170-mRNA-1;_AED=0.05;_eAED=0.05;_QI=98|1|1|1|1|1|2|325|372 |
| chr3_2 | exon | 81803276 | 81804470 | 81803276 | ID=Msa0430170-mRNA-1:exon:22653;Parent=Msa0430170-mRNA-1 |
| chr3_2 | exon | 81804630 | 81804976 | 81804630 | ID=Msa0430170-mRNA-1:exon:22652;Parent=Msa0430170-mRNA-1 |
| chr3_2 | five_prime_UTR | 81804879 | 81804976 | 81804879 | ID=Msa0430170-mRNA-1:five_prime_utr;Parent=Msa0430170-mRNA-1 |
| chr3_2 | CDS | 81804630 | 81804878 | 81804630 | ID=Msa0430170-mRNA-1:cds;Parent=Msa0430170-mRNA-1 |
| chr3_2 | CDS | 81803601 | 81804470 | 81803601 | ID=Msa0430170-mRNA-1:cds;Parent=Msa0430170-mRNA-1 |
| chr3_2 | three_prime_UTR | 81803276 | 81803600 | 81803276 | ID=Msa0430170-mRNA-1:three_prime_utr;Parent=Msa0430170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
