Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0770080 | XP_003614503.2 | 98.982 | 491 | 5 | 0 | 1 | 491 | 1 | 491 | 0.0 | 998 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0770080 | sp|Q869R1|CTLHB_DICDI | 25.758 | 462 | 305 | 13 | 23 | 466 | 114 | 555 | 1.35e-36 | 145 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0770080 | G7JYE2 | 98.982 | 491 | 5 | 0 | 1 | 491 | 1 | 491 | 0.0 | 998 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001450 | Msa0770080 | 0.807845 | 4.143123e-50 | -8.615850e-47 |
| Msa0003700 | Msa0770080 | 0.812609 | 3.889515e-51 | -8.615850e-47 |
| Msa0015390 | Msa0770080 | 0.822336 | 2.501643e-53 | -8.615850e-47 |
| Msa0017510 | Msa0770080 | 0.835803 | 1.356144e-56 | -8.615850e-47 |
| Msa0024210 | Msa0770080 | -0.832294 | 1.025902e-55 | -8.615850e-47 |
| Msa0031340 | Msa0770080 | 0.809598 | 1.748406e-50 | -8.615850e-47 |
| Msa0053780 | Msa0770080 | 0.807981 | 3.875389e-50 | -8.615850e-47 |
| Msa0069330 | Msa0770080 | 0.811443 | 6.985013e-51 | -8.615850e-47 |
| Msa0072370 | Msa0770080 | 0.803210 | 3.885884e-49 | -8.615850e-47 |
| Msa0097810 | Msa0770080 | 0.807501 | 4.901161e-50 | -8.615850e-47 |
| Msa0104550 | Msa0770080 | 0.815473 | 9.079395e-52 | -8.615850e-47 |
| Msa0110970 | Msa0770080 | 0.817239 | 3.655446e-52 | -8.615850e-47 |
| Msa0120010 | Msa0770080 | -0.815306 | 9.892672e-52 | -8.615850e-47 |
| Msa0120020 | Msa0770080 | -0.812621 | 3.867374e-51 | -8.615850e-47 |
| Msa0120040 | Msa0770080 | -0.836048 | 1.175888e-56 | -8.615850e-47 |
| Msa0602870 | Msa0770080 | 0.853555 | 2.211130e-61 | -8.615850e-47 |
| Msa0616160 | Msa0770080 | 0.803060 | 4.174277e-49 | -8.615850e-47 |
| Msa0626090 | Msa0770080 | 0.810317 | 1.224108e-50 | -8.615850e-47 |
| Msa0643890 | Msa0770080 | 0.867878 | 9.889900e-66 | -8.615850e-47 |
| Msa0663810 | Msa0770080 | 0.803036 | 4.221681e-49 | -8.615850e-47 |
| Msa0669320 | Msa0770080 | 0.809891 | 1.512218e-50 | -8.615850e-47 |
| Msa0683730 | Msa0770080 | 0.855348 | 6.703054e-62 | -8.615850e-47 |
| Msa0710800 | Msa0770080 | 0.812574 | 3.958472e-51 | -8.615850e-47 |
| Msa0713820 | Msa0770080 | 0.809957 | 1.463690e-50 | -8.615850e-47 |
| Msa0728630 | Msa0770080 | 0.803028 | 4.237324e-49 | -8.615850e-47 |
| Msa0729720 | Msa0770080 | 0.888214 | 7.199920e-73 | -8.615850e-47 |
| Msa0740510 | Msa0770080 | 0.805422 | 1.345161e-49 | -8.615850e-47 |
| Msa0741240 | Msa0770080 | 0.801870 | 7.340546e-49 | -8.615850e-47 |
| Msa0743720 | Msa0770080 | 0.803365 | 3.609895e-49 | -8.615850e-47 |
| Msa0756060 | Msa0770080 | 0.814909 | 1.211719e-51 | -8.615850e-47 |
| Msa0770080 | Msa0798430 | 0.818343 | 2.059195e-52 | -8.615850e-47 |
| Msa0770080 | Msa0803890 | 0.801975 | 6.984990e-49 | -8.615850e-47 |
| Msa0770080 | Msa0807930 | 0.815181 | 1.054439e-51 | -8.615850e-47 |
| Msa0770080 | Msa0820770 | 0.810358 | 1.199446e-50 | -8.615850e-47 |
| Msa0770080 | Msa0828560 | 0.813790 | 2.142011e-51 | -8.615850e-47 |
| Msa0770080 | Msa0832340 | 0.803181 | 3.939802e-49 | -8.615850e-47 |
| Msa0770080 | Msa0835280 | 0.813345 | 2.683300e-51 | -8.615850e-47 |
| Msa0770080 | Msa0838580 | 0.808409 | 3.141316e-50 | -8.615850e-47 |
| Msa0770080 | Msa0843220 | 0.814353 | 1.608399e-51 | -8.615850e-47 |
| Msa0770080 | Msa0844240 | 0.801018 | 1.097202e-48 | -8.615850e-47 |
| Msa0770080 | Msa0849100 | 0.867062 | 1.805014e-65 | -8.615850e-47 |
| Msa0770080 | Msa0861090 | 0.807287 | 5.440315e-50 | -8.615850e-47 |
| Msa0770080 | Msa0861870 | 0.811192 | 7.918573e-51 | -8.615850e-47 |
| Msa0770080 | Msa0866270 | 0.825584 | 4.329629e-54 | -8.615850e-47 |
| Msa0770080 | Msa0876190 | 0.831521 | 1.592422e-55 | -8.615850e-47 |
| Msa0770080 | Msa0878290 | 0.803484 | 3.410822e-49 | -8.615850e-47 |
| Msa0770080 | Msa0880140 | 0.835203 | 1.923459e-56 | -8.615850e-47 |
| Msa0770080 | Msa0884410 | -0.814457 | 1.525939e-51 | -8.615850e-47 |
| Msa0770080 | Msa0930780 | 0.815288 | 9.982358e-52 | -8.615850e-47 |
| Msa0770080 | Msa0933230 | 0.802824 | 4.669292e-49 | -8.615850e-47 |
| Msa0770080 | Msa0947660 | 0.812880 | 3.393365e-51 | -8.615850e-47 |
| Msa0770080 | Msa0969520 | 0.808430 | 3.109062e-50 | -8.615850e-47 |
| Msa0770080 | Msa1005870 | 0.805751 | 1.147780e-49 | -8.615850e-47 |
| Msa0770080 | Msa1046280 | 0.811648 | 6.301882e-51 | -8.615850e-47 |
| Msa0770080 | Msa1047980 | 0.802748 | 4.841410e-49 | -8.615850e-47 |
| Msa0770080 | Msa1051830 | 0.801900 | 7.238947e-49 | -8.615850e-47 |
| Msa0770080 | Msa1075220 | -0.806292 | 8.830974e-50 | -8.615850e-47 |
| Msa0770080 | Msa1085200 | 0.827959 | 1.172456e-54 | -8.615850e-47 |
| Msa0770080 | Msa1092010 | 0.805245 | 1.464940e-49 | -8.615850e-47 |
| Msa0770080 | Msa1125000 | 0.822255 | 2.611992e-53 | -8.615850e-47 |
| Msa0770080 | Msa1125940 | 0.805726 | 1.161342e-49 | -8.615850e-47 |
| Msa0770080 | Msa1135390 | 0.804951 | 1.687791e-49 | -8.615850e-47 |
| Msa0770080 | Msa1137570 | 0.801689 | 7.997076e-49 | -8.615850e-47 |
| Msa0770080 | Msa1140210 | 0.812272 | 4.609320e-51 | -8.615850e-47 |
| Msa0770080 | Msa1154030 | 0.809120 | 2.214154e-50 | -8.615850e-47 |
| Msa0770080 | Msa1189070 | 0.807596 | 4.678474e-50 | -8.615850e-47 |
| Msa0770080 | Msa1244600 | 0.811970 | 5.363669e-51 | -8.615850e-47 |
| Msa0770080 | Msa1244610 | 0.831196 | 1.914178e-55 | -8.615850e-47 |
| Msa0770080 | Msa1253020 | 0.808172 | 3.529836e-50 | -8.615850e-47 |
| Msa0770080 | Msa1284260 | 0.803402 | 3.545962e-49 | -8.615850e-47 |
| Msa0770080 | Msa1284550 | 0.807573 | 4.732454e-50 | -8.615850e-47 |
| Msa0770080 | Msa1336710 | 0.801990 | 6.938243e-49 | -8.615850e-47 |
| Msa0770080 | Msa1353470 | 0.820082 | 8.277490e-53 | -8.615850e-47 |
| Msa0770080 | Msa1360440 | 0.814167 | 1.768182e-51 | -8.615850e-47 |
| Msa0770080 | Msa1367590 | 0.816758 | 4.688810e-52 | -8.615850e-47 |
| Msa0770080 | Msa1370070 | -0.802586 | 5.228468e-49 | -8.615850e-47 |
| Msa0770080 | Msa1374040 | 0.806236 | 9.071574e-50 | -8.615850e-47 |
| Msa0770080 | Msa1374550 | 0.825444 | 4.672498e-54 | -8.615850e-47 |
| Msa0770080 | Msa1382540 | 0.818401 | 1.997903e-52 | -8.615850e-47 |
| Msa0770080 | Msa1411700 | 0.807045 | 6.121548e-50 | -8.615850e-47 |
| Msa0770080 | Msa1422580 | 0.805599 | 1.234991e-49 | -8.615850e-47 |
| Msa0770080 | Msa1451550 | 0.819732 | 9.952434e-53 | -8.615850e-47 |
| Msa0770080 | Msa1458610 | 0.802152 | 6.425732e-49 | -8.615850e-47 |
| Msa0770080 | Msa1461300 | 0.803056 | 4.182666e-49 | -8.615850e-47 |
| Msa0770080 | Msa1465300 | 0.846148 | 2.605883e-59 | -8.615850e-47 |
| Msa0140780 | Msa0770080 | 0.819152 | 1.349232e-52 | -8.615850e-47 |
| Msa0145580 | Msa0770080 | 0.800650 | 1.304703e-48 | -8.615850e-47 |
| Msa0148100 | Msa0770080 | 0.803004 | 4.286348e-49 | -8.615850e-47 |
| Msa0157290 | Msa0770080 | 0.835866 | 1.307839e-56 | -8.615850e-47 |
| Msa0168500 | Msa0770080 | 0.801453 | 8.942432e-49 | -8.615850e-47 |
| Msa0171290 | Msa0770080 | 0.800778 | 1.228654e-48 | -8.615850e-47 |
| Msa0195630 | Msa0770080 | 0.806172 | 9.360269e-50 | -8.615850e-47 |
| Msa0200260 | Msa0770080 | 0.801533 | 8.609326e-49 | -8.615850e-47 |
| Msa0211150 | Msa0770080 | 0.812365 | 4.398243e-51 | -8.615850e-47 |
| Msa0216240 | Msa0770080 | 0.803825 | 2.898189e-49 | -8.615850e-47 |
| Msa0237410 | Msa0770080 | 0.810365 | 1.195344e-50 | -8.615850e-47 |
| Msa0395820 | Msa0770080 | 0.804865 | 1.759023e-49 | -8.615850e-47 |
| Msa0410650 | Msa0770080 | 0.824104 | 9.669312e-54 | -8.615850e-47 |
| Msa0428590 | Msa0770080 | 0.800002 | 1.767586e-48 | -8.615850e-47 |
| Msa0436490 | Msa0770080 | -0.811000 | 8.714605e-51 | -8.615850e-47 |
| Msa0440750 | Msa0770080 | 0.804530 | 2.067037e-49 | -8.615850e-47 |
| Msa0461720 | Msa0770080 | 0.808781 | 2.616787e-50 | -8.615850e-47 |
| Msa0479970 | Msa0770080 | 0.817343 | 3.463202e-52 | -8.615850e-47 |
| Msa0244960 | Msa0770080 | 0.805331 | 1.405389e-49 | -8.615850e-47 |
| Msa0259500 | Msa0770080 | 0.820990 | 5.122521e-53 | -8.615850e-47 |
| Msa0276630 | Msa0770080 | 0.819582 | 1.076793e-52 | -8.615850e-47 |
| Msa0282250 | Msa0770080 | 0.801437 | 9.010168e-49 | -8.615850e-47 |
| Msa0287650 | Msa0770080 | 0.819354 | 1.213507e-52 | -8.615850e-47 |
| Msa0300690 | Msa0770080 | 0.813056 | 3.105570e-51 | -8.615850e-47 |
| Msa0304510 | Msa0770080 | 0.818373 | 2.027593e-52 | -8.615850e-47 |
| Msa0305700 | Msa0770080 | 0.820213 | 7.723371e-53 | -8.615850e-47 |
| Msa0311700 | Msa0770080 | 0.803462 | 3.446704e-49 | -8.615850e-47 |
| Msa0334040 | Msa0770080 | 0.812065 | 5.112443e-51 | -8.615850e-47 |
| Msa0340470 | Msa0770080 | 0.802703 | 4.946909e-49 | -8.615850e-47 |
| Msa0341540 | Msa0770080 | 0.826877 | 2.131348e-54 | -8.615850e-47 |
| Msa0487630 | Msa0770080 | 0.804663 | 1.939025e-49 | -8.615850e-47 |
| Msa0495320 | Msa0770080 | 0.803440 | 3.482514e-49 | -8.615850e-47 |
| Msa0507680 | Msa0770080 | 0.817031 | 4.071131e-52 | -8.615850e-47 |
| Msa0522590 | Msa0770080 | -0.806958 | 6.387909e-50 | -8.615850e-47 |
| Msa0523460 | Msa0770080 | 0.819000 | 1.460912e-52 | -8.615850e-47 |
| Msa0524500 | Msa0770080 | 0.814925 | 1.201630e-51 | -8.615850e-47 |
| Msa0547890 | Msa0770080 | 0.857352 | 1.730311e-62 | -8.615850e-47 |
| Msa0574890 | Msa0770080 | 0.805855 | 1.091236e-49 | -8.615850e-47 |
| Msa0576880 | Msa0770080 | 0.800032 | 1.742965e-48 | -8.615850e-47 |
| Msa0594660 | Msa0770080 | 0.816562 | 5.188821e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0770080 | MtrunA17_Chr5g0422761 | 98.982 | 491 | 5 | 0 | 1 | 491 | 1 | 491 | 0.0 | 998 |
| Msa0770080 | MtrunA17_Chr1g0210161 | 83.153 | 463 | 75 | 1 | 29 | 491 | 35 | 494 | 0.0 | 750 |
| Msa0770080 | MtrunA17_Chr3g0090051 | 28.571 | 308 | 182 | 7 | 150 | 445 | 262 | 543 | 3.21e-30 | 124 |
| Msa0770080 | MtrunA17_Chr4g0061051 | 72.308 | 65 | 15 | 1 | 427 | 491 | 1 | 62 | 2.58e-24 | 95.9 |
| Msa0770080 | MtrunA17_Chr7g0254111 | 25.551 | 454 | 295 | 11 | 25 | 471 | 32 | 449 | 8.69e-24 | 103 |
| Msa0770080 | MtrunA17_Chr7g0275761 | 69.231 | 65 | 17 | 1 | 427 | 491 | 1 | 62 | 3.96e-23 | 92.4 |
| Msa0770080 | MtrunA17_Chr6g0460811 | 24.722 | 360 | 254 | 8 | 92 | 445 | 67 | 415 | 5.11e-22 | 98.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0770080 | AT1G25500.2 | 74.364 | 472 | 117 | 2 | 9 | 479 | 18 | 486 | 0.0 | 681 |
| Msa0770080 | AT1G25500.3 | 78.641 | 412 | 87 | 1 | 69 | 479 | 17 | 428 | 0.0 | 627 |
| Msa0770080 | AT1G25500.1 | 80.858 | 303 | 57 | 1 | 121 | 422 | 1 | 303 | 1.31e-170 | 483 |
| Msa0770080 | AT5G13760.1 | 28.041 | 296 | 199 | 3 | 150 | 445 | 252 | 533 | 4.76e-31 | 126 |
| Msa0770080 | AT3G03700.1 | 25.871 | 402 | 273 | 10 | 92 | 485 | 94 | 478 | 1.20e-19 | 92.0 |
| Msa0770080 | AT3G04440.2 | 25.871 | 402 | 273 | 10 | 92 | 485 | 71 | 455 | 1.21e-19 | 92.0 |
| Msa0770080 | AT3G04440.1 | 25.871 | 402 | 273 | 10 | 92 | 485 | 94 | 478 | 1.35e-19 | 92.0 |
Find 150 sgRNAs with CRISPR-Local
Find 328 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCTCTGTAAGCTTATTT+TGG | 0.132127 | 5_2:-40047257 | Msa0770080:CDS |
| GTCATCAACTAACTTTAAAA+TGG | 0.145187 | 5_2:+40050055 | None:intergenic |
| CCCTTGAAGATTGGTGTTTA+TGG | 0.163569 | 5_2:-40046683 | Msa0770080:intron |
| GAGAGTCGCATATGCGTTTA+TGG | 0.163908 | 5_2:-40047499 | Msa0770080:CDS |
| TTATGGCTGTCATGCTCTTA+TGG | 0.229988 | 5_2:-40047482 | Msa0770080:CDS |
| TTTAGTGATTCCTCAAATTT+AGG | 0.231192 | 5_2:+40045813 | None:intergenic |
| CTATTATTCGTTACAGCTTT+TGG | 0.231291 | 5_2:-40049830 | Msa0770080:five_prime_UTR |
| GTAGTAGCTTTGAGCTATAT+TGG | 0.258275 | 5_2:-40045642 | Msa0770080:three_prime_UTR |
| TTCAGGTGCTGTGCTGTTAA+TGG | 0.262803 | 5_2:-40046579 | Msa0770080:CDS |
| TGCAGAACCAACATTGTAAA+TGG | 0.266173 | 5_2:+40047561 | None:intergenic |
| AGTTATCAGCCCACCTAAAA+TGG | 0.267123 | 5_2:+40046553 | None:intergenic |
| TTGTGATTCTTGGCGTTAAC+AGG | 0.271164 | 5_2:-40049417 | Msa0770080:CDS |
| CTGGAACTTGCTCTGGTGTT+TGG | 0.293203 | 5_2:-40046532 | Msa0770080:CDS |
| GGCGTTGGCACGATGTATTC+TGG | 0.294547 | 5_2:-40049483 | Msa0770080:CDS |
| CTGGTTTGACAGAGGATTAC+TGG | 0.297174 | 5_2:-40049333 | Msa0770080:CDS |
| TCCCATCTCTGAATCAATAA+TGG | 0.300289 | 5_2:+40045952 | None:intergenic |
| CATTATTCACAGCTGCTATT+AGG | 0.318508 | 5_2:-40047071 | Msa0770080:CDS |
| TATGCTGTTGCTGGCGGCGT+TGG | 0.323052 | 5_2:-40049304 | Msa0770080:CDS |
| TGGAACTTGCTCTGGTGTTT+GGG | 0.323340 | 5_2:-40046531 | Msa0770080:CDS |
| ATTCCTAAGTGGTGATGATT+TGG | 0.333572 | 5_2:+40049968 | None:intergenic |
| CAAGATAAGTGGTAAGAATA+TGG | 0.340491 | 5_2:+40049212 | None:intergenic |
| CTAACAAGATGCATCAAATA+TGG | 0.340891 | 5_2:-40045614 | Msa0770080:three_prime_UTR |
| TATGCTCATGGGCATGATAT+TGG | 0.343150 | 5_2:-40046462 | Msa0770080:intron |
| TCATCAACTAACTTTAAAAT+GGG | 0.343416 | 5_2:+40050056 | None:intergenic |
| ATGCTGTTGCTGGCGGCGTT+GGG | 0.356399 | 5_2:-40049303 | Msa0770080:CDS |
| GGCGGCGTTGGGACTGCTCT+TGG | 0.356441 | 5_2:-40049292 | Msa0770080:CDS |
| AAATTTGAGGAATCACTAAA+TGG | 0.358261 | 5_2:-40045810 | Msa0770080:three_prime_UTR |
| TGGATGGCATTGTGGTCATT+TGG | 0.361862 | 5_2:-40047462 | Msa0770080:CDS |
| TTCCGCATAACAGATATATA+TGG | 0.362458 | 5_2:+40045978 | None:intergenic |
| TCATTCTTTGGAACTATTCA+AGG | 0.362770 | 5_2:+40045555 | None:intergenic |
| TATGCTTTAACGACATCTTT+TGG | 0.372835 | 5_2:-40047111 | Msa0770080:CDS |
| TGGCCACTCTATGCTGTTGC+TGG | 0.372929 | 5_2:-40049313 | Msa0770080:CDS |
| ACGAAAATAGATTAGATAGA+AGG | 0.379012 | 5_2:+40049892 | None:intergenic |
| TACAATGTTGGTTCTGCAAA+AGG | 0.380351 | 5_2:-40047556 | Msa0770080:CDS |
| AACGTTGCCATGCGCCATCT+TGG | 0.385559 | 5_2:+40050024 | None:intergenic |
| TTTGATTCGTGTCAGATAAG+AGG | 0.386717 | 5_2:-40046948 | Msa0770080:intron |
| GAGATGAAGTAGGAATAAAA+AGG | 0.387744 | 5_2:+40049770 | None:intergenic |
| GGTGCAATGTTTCGGAAATC+TGG | 0.390267 | 5_2:+40045914 | None:intergenic |
| ATGGAGTTGGTTGTTGCTGT+TGG | 0.393555 | 5_2:-40049269 | Msa0770080:CDS |
| TTGAATGTAAGAAAAGAAAA+AGG | 0.402017 | 5_2:+40049807 | None:intergenic |
| CCAGAAAACGCCTAAATTTG+AGG | 0.402709 | 5_2:-40045823 | Msa0770080:exon |
| TCAGGTGCTGTGCTGTTAAT+GGG | 0.404479 | 5_2:-40046578 | Msa0770080:CDS |
| ACAGTACATGTCATAGTGTC+TGG | 0.405736 | 5_2:-40047213 | Msa0770080:CDS |
| AAGTCGCTGGTGCAATGTTT+CGG | 0.405815 | 5_2:+40045906 | None:intergenic |
| TTGCGAGGCTGCATCAGTTC+CGG | 0.407006 | 5_2:-40047160 | Msa0770080:CDS |
| TAGTAGCTTTGAGCTATATT+GGG | 0.407631 | 5_2:-40045641 | Msa0770080:three_prime_UTR |
| CAAAACCCACGCCAATCAAC+TGG | 0.407766 | 5_2:+40049443 | None:intergenic |
| TTGTGGTCATTTGGAGCTGC+TGG | 0.409399 | 5_2:-40047453 | Msa0770080:CDS |
| CTTGCTCTGGTGTTTGGGCA+TGG | 0.410854 | 5_2:-40046526 | Msa0770080:CDS |
| CTATTTGTGATCCAGTTGAT+TGG | 0.417906 | 5_2:-40049454 | Msa0770080:CDS |
| TACCTGATTGTTGGTGGCAG+TGG | 0.431092 | 5_2:+40049653 | None:intergenic |
| TAAGTACACGTACCGGTTCA+TGG | 0.432396 | 5_2:-40049365 | Msa0770080:CDS |
| CCCATCTCTGAATCAATAAT+GGG | 0.437239 | 5_2:+40045953 | None:intergenic |
| TTAACTTAGTACCTGATTGT+TGG | 0.439199 | 5_2:+40049644 | None:intergenic |
| TGTCATAGTGTCTGGGTCAC+TGG | 0.440313 | 5_2:-40047205 | Msa0770080:CDS |
| CTGATAACTGGAACTTGCTC+TGG | 0.440852 | 5_2:-40046539 | Msa0770080:CDS |
| GGACTGCTCTTGGATGGAGT+TGG | 0.442052 | 5_2:-40049282 | Msa0770080:CDS |
| ACCGTTCTGCTAGAGATGCC+TGG | 0.442652 | 5_2:-40046649 | Msa0770080:CDS |
| TGGAGTTGGTTGTTGCTGTT+GGG | 0.445429 | 5_2:-40049268 | Msa0770080:CDS |
| TGGGAGTTATTTCAATCAAC+GGG | 0.445833 | 5_2:-40046629 | Msa0770080:CDS |
| AGAGGAATCCGGTCAAAGAT+AGG | 0.447023 | 5_2:-40046930 | Msa0770080:CDS |
| CAGACTTCCATTTACAATGT+TGG | 0.448036 | 5_2:-40047568 | Msa0770080:CDS |
| ATACTGTAAAGATTTCATTA+TGG | 0.449302 | 5_2:+40047131 | None:intergenic |
| ATCTTGTGGAGACTCTTGTC+AGG | 0.452670 | 5_2:-40046866 | Msa0770080:CDS |
| CATTCTTGCCTATCTTTGAC+CGG | 0.452929 | 5_2:+40046922 | None:intergenic |
| TAAAGATTTCATTATGGAGT+TGG | 0.454562 | 5_2:+40047137 | None:intergenic |
| GGACAGACACCTTCATCATC+TGG | 0.455412 | 5_2:+40049233 | None:intergenic |
| GGTTGGAGCGGCAATGGTTG+TGG | 0.459158 | 5_2:-40046019 | Msa0770080:CDS |
| GTGTTTGGGCATGGATGAAA+TGG | 0.463121 | 5_2:-40046517 | Msa0770080:CDS |
| AATGAAACTAAAAGATGTAA+AGG | 0.463613 | 5_2:+40045738 | None:intergenic |
| CTTGTGGCGTATGATTGTTC+AGG | 0.468254 | 5_2:-40046596 | Msa0770080:CDS |
| CTGGTTCGTGTTAGTATCCA+TGG | 0.469444 | 5_2:-40047186 | Msa0770080:CDS |
| GCGTTGGGACTGCTCTTGGA+TGG | 0.476999 | 5_2:-40049288 | Msa0770080:CDS |
| CCCATTATTGATTCAGAGAT+GGG | 0.480499 | 5_2:-40045953 | Msa0770080:CDS |
| TTCCACTGCCACCAACAATC+AGG | 0.481194 | 5_2:-40049655 | Msa0770080:intron |
| TCTTATGACAATTACCATCA+TGG | 0.483049 | 5_2:-40049682 | Msa0770080:exon |
| ATGAAACTAAAAGATGTAAA+GGG | 0.483111 | 5_2:+40045739 | None:intergenic |
| ATATTATATCTGTCATAGAT+AGG | 0.484586 | 5_2:-40049105 | Msa0770080:intron |
| GCATGGCAACGTTACAATCA+TGG | 0.485605 | 5_2:-40050014 | Msa0770080:five_prime_UTR |
| ACGTTGCCATGCGCCATCTT+GGG | 0.486695 | 5_2:+40050025 | None:intergenic |
| AGCTCCTATGTTGAAGTCGC+TGG | 0.491841 | 5_2:+40045893 | None:intergenic |
| TGCTATTAGGACACTGCGAT+GGG | 0.492171 | 5_2:-40047058 | Msa0770080:CDS |
| TGGATCTACATCTATGCTCA+TGG | 0.499343 | 5_2:-40046474 | Msa0770080:CDS |
| AACATAGGAGCTCGCGTGCA+AGG | 0.501996 | 5_2:-40045882 | Msa0770080:CDS |
| GAAAATGTGTTTGATGTTGA+GGG | 0.502240 | 5_2:-40045664 | Msa0770080:three_prime_UTR |
| ACCCATTATTGATTCAGAGA+TGG | 0.503313 | 5_2:-40045954 | Msa0770080:CDS |
| CAGCCTCATTCTCCATGAAC+CGG | 0.504266 | 5_2:+40049353 | None:intergenic |
| AGAAAATGTGTTTGATGTTG+AGG | 0.508848 | 5_2:-40045665 | Msa0770080:three_prime_UTR |
| GGCTGTCATGCTCTTATGGA+TGG | 0.510990 | 5_2:-40047478 | Msa0770080:CDS |
| GAGTCTCCACAAGATGGAAA+AGG | 0.511964 | 5_2:+40046874 | None:intergenic |
| CGGTTCATGGAGAATGAGGC+TGG | 0.519033 | 5_2:-40049352 | Msa0770080:CDS |
| GATTTCATTATGGAGTTGGC+CGG | 0.519426 | 5_2:+40047141 | None:intergenic |
| TCTGCAAAAGGCTGTTAAGA+TGG | 0.525636 | 5_2:-40047544 | Msa0770080:CDS |
| CGTGTCAGATAAGAGGAATC+CGG | 0.526198 | 5_2:-40046941 | Msa0770080:intron |
| CCGTTCTGCTAGAGATGCCT+GGG | 0.526826 | 5_2:-40046648 | Msa0770080:CDS |
| CATCAGTGAAGTGGTGAACA+TGG | 0.529486 | 5_2:-40049515 | Msa0770080:CDS |
| AAAAGGCTGTTAAGATGGTA+TGG | 0.531876 | 5_2:-40047539 | Msa0770080:CDS |
| TATGCGACTCTCATAACCTC+TGG | 0.532254 | 5_2:+40047510 | None:intergenic |
| ACTTTCATATAGCAACAAGT+TGG | 0.533973 | 5_2:-40045691 | Msa0770080:three_prime_UTR |
| CTGGGAGTTATTTCAATCAA+CGG | 0.546389 | 5_2:-40046630 | Msa0770080:CDS |
| TAACAAGTATGCTTATGTCC+AGG | 0.548708 | 5_2:-40046838 | Msa0770080:intron |
| CTGCTATTAGGACACTGCGA+TGG | 0.551628 | 5_2:-40047059 | Msa0770080:CDS |
| ACTTAGTACCTGATTGTTGG+TGG | 0.551958 | 5_2:+40049647 | None:intergenic |
| ACTGATCACAGCAAGATAAG+TGG | 0.552209 | 5_2:+40049201 | None:intergenic |
| TGGGTGACGGTGGACGTTGG+TGG | 0.554486 | 5_2:-40047413 | Msa0770080:CDS |
| TGCTCTTATGGATGGCATTG+TGG | 0.555214 | 5_2:-40047470 | Msa0770080:CDS |
| TGCACCAGCGACTTCAACAT+AGG | 0.555754 | 5_2:-40045897 | Msa0770080:CDS |
| ATGCCAAATCATCACCACTT+AGG | 0.560450 | 5_2:-40049971 | Msa0770080:five_prime_UTR |
| TGACAAGAGTCTCCACAAGA+TGG | 0.562607 | 5_2:+40046868 | None:intergenic |
| TACGAGAATCAAGGTGATCG+TGG | 0.569177 | 5_2:+40045848 | None:intergenic |
| GTGATCCAGTTGATTGGCGT+GGG | 0.570702 | 5_2:-40049448 | Msa0770080:CDS |
| GCGCGCAATCCAGATGATGA+AGG | 0.572957 | 5_2:-40049242 | Msa0770080:CDS |
| AACGGGAGTTGAAGCACTTG+TGG | 0.573101 | 5_2:-40046612 | Msa0770080:CDS |
| CAGTACATGTCATAGTGTCT+GGG | 0.574385 | 5_2:-40047212 | Msa0770080:CDS |
| GGATCTACATCTATGCTCAT+GGG | 0.586213 | 5_2:-40046473 | Msa0770080:CDS |
| GATGACAACACAACCCAAGA+TGG | 0.586305 | 5_2:-40050038 | Msa0770080:five_prime_UTR |
| ACATAGGAGCTCGCGTGCAA+GGG | 0.586817 | 5_2:-40045881 | Msa0770080:CDS |
| TGGACGTTGGTGGCTTCTTG+TGG | 0.590587 | 5_2:-40047403 | Msa0770080:intron |
| TGTGATCCAGTTGATTGGCG+TGG | 0.597398 | 5_2:-40049449 | Msa0770080:CDS |
| GTACCGGTTCATGGAGAATG+AGG | 0.606474 | 5_2:-40049356 | Msa0770080:CDS |
| ATGGTAATTGTCATAAGATG+TGG | 0.606729 | 5_2:+40049687 | None:intergenic |
| TGGAGCGGCAATGGTTGTGG+TGG | 0.610073 | 5_2:-40046016 | Msa0770080:CDS |
| TTTCTGGTATACGAGAATCA+AGG | 0.610752 | 5_2:+40045839 | None:intergenic |
| CATCAACTAACTTTAAAATG+GGG | 0.611406 | 5_2:+40050057 | None:intergenic |
| GCATGGGTGACGGTGGACGT+TGG | 0.611997 | 5_2:-40047416 | Msa0770080:CDS |
| TGGTGTCGTAGCTTCAAGCA+TGG | 0.612507 | 5_2:-40047433 | Msa0770080:CDS |
| ATCCATATATATCTGTTATG+CGG | 0.615901 | 5_2:-40045980 | Msa0770080:CDS |
| CCACTCTATGCTGTTGCTGG+CGG | 0.616172 | 5_2:-40049310 | Msa0770080:CDS |
| GTAGCTTCAAGCATGGGTGA+CGG | 0.623866 | 5_2:-40047426 | Msa0770080:CDS |
| ACATTGATAAGTACACGTAC+CGG | 0.624419 | 5_2:-40049372 | Msa0770080:CDS |
| CGTTGATTGAAATAACTCCC+AGG | 0.625002 | 5_2:+40046631 | None:intergenic |
| ATGCAGCCTCGCAACCACCA+TGG | 0.625809 | 5_2:+40047169 | None:intergenic |
| CAACAACAACATCAGTGAAG+TGG | 0.626519 | 5_2:-40049524 | Msa0770080:CDS |
| ACGAGAATCAAGGTGATCGT+GGG | 0.626896 | 5_2:+40045849 | None:intergenic |
| ACACAACCCAAGATGGCGCA+TGG | 0.628515 | 5_2:-40050031 | Msa0770080:five_prime_UTR |
| CCCAGGCATCTCTAGCAGAA+CGG | 0.629817 | 5_2:+40046648 | None:intergenic |
| AAGGGTTGACATATATATCG+TGG | 0.633356 | 5_2:+40045757 | None:intergenic |
| GGTGTCGTAGCTTCAAGCAT+GGG | 0.633811 | 5_2:-40047432 | Msa0770080:CDS |
| GAATGAGGCTGGTTTGACAG+AGG | 0.635745 | 5_2:-40049341 | Msa0770080:CDS |
| AGCAGAGAGAGATTCCTAAG+TGG | 0.639078 | 5_2:+40049957 | None:intergenic |
| AACGTTACAATCATGGCGCG+TGG | 0.643009 | 5_2:-40050007 | Msa0770080:five_prime_UTR |
| CCGCCAGCAACAGCATAGAG+TGG | 0.647234 | 5_2:+40049310 | None:intergenic |
| TATTAGGACACTGCGATGGG+AGG | 0.654899 | 5_2:-40047055 | Msa0770080:intron |
| GCTTCAAGCATGGGTGACGG+TGG | 0.662340 | 5_2:-40047423 | Msa0770080:CDS |
| TAGTATCCATGGTGGTTGCG+AGG | 0.664174 | 5_2:-40047175 | Msa0770080:CDS |
| GATGGTATGGAATCTTCCAG+AGG | 0.689240 | 5_2:-40047526 | Msa0770080:CDS |
| GGCAGTGGAAGAATCCATGA+TGG | 0.691125 | 5_2:+40049668 | None:intergenic |
| TGTTAACGCCAAGAATCACA+AGG | 0.715028 | 5_2:+40049419 | None:intergenic |
| TCCAAAATAAGCTTACAGAG+AGG | 0.747140 | 5_2:+40047256 | None:intergenic |
| GTTCGTGTTAGTATCCATGG+TGG | 0.768648 | 5_2:-40047183 | Msa0770080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATATATTGTAGAATAATTT+TGG | + | chr5_2:40047676-40047695 | None:intergenic | 10.0% |
| !! | ATTATTCTACAATATATATT+TGG | - | chr5_2:40047678-40047697 | Msa0770080:intron | 10.0% |
| !!! | TTTGCTTTATATAATTATTT+TGG | - | chr5_2:40048000-40048019 | Msa0770080:intron | 10.0% |
| !!! | ATTCAAATTGTTTTTGTATA+AGG | - | chr5_2:40046630-40046649 | Msa0770080:CDS | 15.0% |
| !! | TTTAAGTAAACAAATTAAAC+AGG | + | chr5_2:40047034-40047053 | None:intergenic | 15.0% |
| !! | AATAAATCAATTCATGTATT+GGG | + | chr5_2:40047196-40047215 | None:intergenic | 15.0% |
| !! | TAATAAATCAATTCATGTAT+TGG | + | chr5_2:40047197-40047216 | None:intergenic | 15.0% |
| !! | ATTATATAAAGCAAATAGAA+GGG | + | chr5_2:40047995-40048014 | None:intergenic | 15.0% |
| !! | AATTATATAAAGCAAATAGA+AGG | + | chr5_2:40047996-40048015 | None:intergenic | 15.0% |
| !! | TCAAAAGTAATAAAAAATCA+AGG | + | chr5_2:40049212-40049231 | None:intergenic | 15.0% |
| !!! | TCATCAACTAACTTTAAAAT+GGG | + | chr5_2:40045581-40045600 | None:intergenic | 20.0% |
| !! | TTGAATGTAAGAAAAGAAAA+AGG | + | chr5_2:40045830-40045849 | None:intergenic | 20.0% |
| !! | ATATTATATCTGTCATAGAT+AGG | - | chr5_2:40046529-40046548 | Msa0770080:CDS | 20.0% |
| !! | ATAAACATTTATGCTAAGAA+AGG | + | chr5_2:40046566-40046585 | None:intergenic | 20.0% |
| !! | CATAGCTTATAGAAATTAAA+TGG | - | chr5_2:40046691-40046710 | Msa0770080:intron | 20.0% |
| !! | AATTAAATGGAAATAGCTTA+TGG | - | chr5_2:40046704-40046723 | Msa0770080:intron | 20.0% |
| !!! | CAAATTTTAAAGAACAAGAA+AGG | + | chr5_2:40046836-40046855 | None:intergenic | 20.0% |
| !! | TAAATAGTTAATCTAATGAG+AGG | - | chr5_2:40046953-40046972 | Msa0770080:intron | 20.0% |
| !! | AAATTAAACAGGTTAAATCA+AGG | + | chr5_2:40047023-40047042 | None:intergenic | 20.0% |
| !! | GTTGTACTTAGATATAAATT+AGG | - | chr5_2:40047389-40047408 | Msa0770080:intron | 20.0% |
| !!! | TTTTAAATGAAACTTCTTAC+AGG | + | chr5_2:40047432-40047451 | None:intergenic | 20.0% |
| !!! | TAATAACTTTAGGTTTTGTT+TGG | - | chr5_2:40047480-40047499 | Msa0770080:CDS | 20.0% |
| !!! | AATAACTTTAGGTTTTGTTT+GGG | - | chr5_2:40047481-40047500 | Msa0770080:CDS | 20.0% |
| !!! | TTTAGAGTATTATAACAACA+TGG | - | chr5_2:40047621-40047640 | Msa0770080:intron | 20.0% |
| !!! | TATTGTAGAATAATTTTGGA+GGG | + | chr5_2:40047672-40047691 | None:intergenic | 20.0% |
| !!! | ATATTGTAGAATAATTTTGG+AGG | + | chr5_2:40047673-40047692 | None:intergenic | 20.0% |
| !! | ATACTGTAAAGATTTCATTA+TGG | + | chr5_2:40048506-40048525 | None:intergenic | 20.0% |
| !! | AAAGTAATAAAAAATCAAGG+AGG | + | chr5_2:40049209-40049228 | None:intergenic | 20.0% |
| !!! | GTAAAACATTTTTATGTTGT+AGG | - | chr5_2:40049339-40049358 | Msa0770080:CDS | 20.0% |
| !! | AAATTTAGATATTAGGACAT+CGG | + | chr5_2:40049411-40049430 | None:intergenic | 20.0% |
| !! | CTTCTCTAAATTTAGATATT+AGG | + | chr5_2:40049418-40049437 | None:intergenic | 20.0% |
| !! | GATATAATGCATACTTAATA+TGG | + | chr5_2:40049518-40049537 | None:intergenic | 20.0% |
| !! | ATGAAACTAAAAGATGTAAA+GGG | + | chr5_2:40049898-40049917 | None:intergenic | 20.0% |
| !! | AATGAAACTAAAAGATGTAA+AGG | + | chr5_2:40049899-40049918 | None:intergenic | 20.0% |
| !!! | CATCAACTAACTTTAAAATG+GGG | + | chr5_2:40045580-40045599 | None:intergenic | 25.0% |
| !! | GTCATCAACTAACTTTAAAA+TGG | + | chr5_2:40045582-40045601 | None:intergenic | 25.0% |
| ! | ACGAAAATAGATTAGATAGA+AGG | + | chr5_2:40045745-40045764 | None:intergenic | 25.0% |
| !!! | AACAAACCCACAATTTTTTT+AGG | - | chr5_2:40046030-40046049 | Msa0770080:intron | 25.0% |
| ! | TCAGATCCTAAAAAAATTGT+GGG | + | chr5_2:40046039-40046058 | None:intergenic | 25.0% |
| ! | AACTTGTGAAAGATCATATA+AGG | - | chr5_2:40046662-40046681 | Msa0770080:CDS | 25.0% |
| ! | GAAATTGAAAGGATTGTATT+AGG | + | chr5_2:40047144-40047163 | None:intergenic | 25.0% |
| !! | CATTTTATGTTGTTAGCTAA+TGG | - | chr5_2:40047359-40047378 | Msa0770080:intron | 25.0% |
| ! | ATACAAAATTCCCCTAATTT+GGG | + | chr5_2:40047710-40047729 | None:intergenic | 25.0% |
| ! | AATACAAAATTCCCCTAATT+TGG | + | chr5_2:40047711-40047730 | None:intergenic | 25.0% |
| !! | ATGTCGCGAATTTTATTAAA+TGG | + | chr5_2:40047872-40047891 | None:intergenic | 25.0% |
| ! | ATTTAATAAAATTCGCGACA+TGG | - | chr5_2:40047871-40047890 | Msa0770080:intron | 25.0% |
| !! | ACATGGATACTTTCATTTTA+TGG | - | chr5_2:40047888-40047907 | Msa0770080:intron | 25.0% |
| ! | TAAAGATTTCATTATGGAGT+TGG | + | chr5_2:40048500-40048519 | None:intergenic | 25.0% |
| !! | TCCTAACAATATAGAGATTT+TGG | - | chr5_2:40049232-40049251 | Msa0770080:CDS | 25.0% |
| !! | CCTAACAATATAGAGATTTT+GGG | - | chr5_2:40049233-40049252 | Msa0770080:CDS | 25.0% |
| !! | CTAACAATATAGAGATTTTG+GGG | - | chr5_2:40049234-40049253 | Msa0770080:CDS | 25.0% |
| ! | ATCCATATATATCTGTTATG+CGG | - | chr5_2:40049654-40049673 | Msa0770080:intron | 25.0% |
| ! | TTTAGTGATTCCTCAAATTT+AGG | + | chr5_2:40049824-40049843 | None:intergenic | 25.0% |
| ! | AAATTTGAGGAATCACTAAA+TGG | - | chr5_2:40049824-40049843 | Msa0770080:five_prime_UTR | 25.0% |
| ! | CTATTATTCGTTACAGCTTT+TGG | - | chr5_2:40045804-40045823 | Msa0770080:three_prime_UTR | 30.0% |
| GAGATGAAGTAGGAATAAAA+AGG | + | chr5_2:40045867-40045886 | None:intergenic | 30.0% | |
| ATGGTAATTGTCATAAGATG+TGG | + | chr5_2:40045950-40045969 | None:intergenic | 30.0% | |
| TCTTATGACAATTACCATCA+TGG | - | chr5_2:40045952-40045971 | Msa0770080:CDS | 30.0% | |
| TTAACTTAGTACCTGATTGT+TGG | + | chr5_2:40045993-40046012 | None:intergenic | 30.0% | |
| CTCAGATCCTAAAAAAATTG+TGG | + | chr5_2:40046040-40046059 | None:intergenic | 30.0% | |
| TAGGATCTGAGTATATCATA+TGG | - | chr5_2:40046049-40046068 | Msa0770080:intron | 30.0% | |
| ! | ATGGATTTTTGACAATATGC+AGG | - | chr5_2:40046068-40046087 | Msa0770080:intron | 30.0% |
| CAAGATAAGTGGTAAGAATA+TGG | + | chr5_2:40046425-40046444 | None:intergenic | 30.0% | |
| AATTTCATGTTCGCACAAAA+GGG | + | chr5_2:40046877-40046896 | None:intergenic | 30.0% | |
| ACAAACGTAATGTTCATCTT+CGG | - | chr5_2:40047064-40047083 | Msa0770080:CDS | 30.0% | |
| TAGGTGAGCTCTTAAAATAT+TGG | + | chr5_2:40047101-40047120 | None:intergenic | 30.0% | |
| GTATTAGGAGGACAAATAAT+AGG | + | chr5_2:40047129-40047148 | None:intergenic | 30.0% | |
| ATTGAAAGGATTGTATTAGG+AGG | + | chr5_2:40047141-40047160 | None:intergenic | 30.0% | |
| !! | AGATTCTCTCTGAAATTGAA+AGG | + | chr5_2:40047155-40047174 | None:intergenic | 30.0% |
| CTAACAACATAAAATGACCT+AGG | + | chr5_2:40047355-40047374 | None:intergenic | 30.0% | |
| AGGTCTATGGTAATAACTTT+AGG | - | chr5_2:40047470-40047489 | Msa0770080:CDS | 30.0% | |
| AATTGCTCTATCAAATAAGG+TGG | + | chr5_2:40047555-40047574 | None:intergenic | 30.0% | |
| ! | CCTTATTTGATAGAGCAATT+CGG | - | chr5_2:40047555-40047574 | Msa0770080:CDS | 30.0% |
| TACAAAATTCCCCTAATTTG+GGG | + | chr5_2:40047709-40047728 | None:intergenic | 30.0% | |
| ! | ACTTTCATTTTATGGCAGAT+CGG | - | chr5_2:40047896-40047915 | Msa0770080:intron | 30.0% |
| !! | TTGGTCATTAAGTTGATTTC+TGG | - | chr5_2:40048019-40048038 | Msa0770080:intron | 30.0% |
| TTAGCTTATGCTTATCTCAT+TGG | - | chr5_2:40048328-40048347 | Msa0770080:intron | 30.0% | |
| ! | TATGCTTTAACGACATCTTT+TGG | - | chr5_2:40048523-40048542 | Msa0770080:intron | 30.0% |
| CATGAGAAATGAATACGTAA+AGG | + | chr5_2:40048653-40048672 | None:intergenic | 30.0% | |
| ! | AGTGATAGAGCTTTTATGAT+TGG | - | chr5_2:40049140-40049159 | Msa0770080:CDS | 30.0% |
| CCCAAAATCTCTATATTGTT+AGG | + | chr5_2:40049236-40049255 | None:intergenic | 30.0% | |
| AACACCTATTGTAGAAAAGA+TGG | - | chr5_2:40049258-40049277 | Msa0770080:CDS | 30.0% | |
| ! | ATTCTCACTGTAAAGGTTTT+AGG | + | chr5_2:40049298-40049317 | None:intergenic | 30.0% |
| ATATCTCATTCTCACTGTAA+AGG | + | chr5_2:40049305-40049324 | None:intergenic | 30.0% | |
| TTTACAGTGAGAATGAGATA+TGG | - | chr5_2:40049304-40049323 | Msa0770080:CDS | 30.0% | |
| ! | ATTTTTATGTTGTAGGTGCA+TGG | - | chr5_2:40049346-40049365 | Msa0770080:CDS | 30.0% |
| GTCATGTGTAAATGGAATTT+GGG | + | chr5_2:40049446-40049465 | None:intergenic | 30.0% | |
| TGTCATGTGTAAATGGAATT+TGG | + | chr5_2:40049447-40049466 | None:intergenic | 30.0% | |
| !!! | TGACATGTGAATTTTTAGGT+TGG | - | chr5_2:40049598-40049617 | Msa0770080:intron | 30.0% |
| TTCCGCATAACAGATATATA+TGG | + | chr5_2:40049659-40049678 | None:intergenic | 30.0% | |
| AAATCTGGTTGAAAAACTCA+TGG | + | chr5_2:40049708-40049727 | None:intergenic | 30.0% | |
| ACTTTCATATAGCAACAAGT+TGG | - | chr5_2:40049943-40049962 | Msa0770080:five_prime_UTR | 30.0% | |
| AGAAAATGTGTTTGATGTTG+AGG | - | chr5_2:40049969-40049988 | Msa0770080:five_prime_UTR | 30.0% | |
| GAAAATGTGTTTGATGTTGA+GGG | - | chr5_2:40049970-40049989 | Msa0770080:five_prime_UTR | 30.0% | |
| !! | TAGTAGCTTTGAGCTATATT+GGG | - | chr5_2:40049993-40050012 | Msa0770080:five_prime_UTR | 30.0% |
| CTAACAAGATGCATCAAATA+TGG | - | chr5_2:40050020-40050039 | Msa0770080:five_prime_UTR | 30.0% | |
| ! | ATTCCTAAGTGGTGATGATT+TGG | + | chr5_2:40045669-40045688 | None:intergenic | 35.0% |
| ! | CAGGAGAAGTATAGAAAAAG+TGG | - | chr5_2:40046087-40046106 | Msa0770080:intron | 35.0% |
| CTATTTGTGATCCAGTTGAT+TGG | - | chr5_2:40046180-40046199 | Msa0770080:intron | 35.0% | |
| ACAGGTTCAAGAAAAAGAAC+AGG | - | chr5_2:40046235-40046254 | Msa0770080:intron | 35.0% | |
| ACATTGATAAGTACACGTAC+CGG | - | chr5_2:40046262-40046281 | Msa0770080:intron | 35.0% | |
| ! | TGATCAGTGTTTTGTGTTTC+TGG | - | chr5_2:40046448-40046467 | Msa0770080:intron | 35.0% |
| ! | GATCAGTGTTTTGTGTTTCT+GGG | - | chr5_2:40046449-40046468 | Msa0770080:intron | 35.0% |
| !!! | TACGTACTTTTGAGACTGTT+TGG | + | chr5_2:40046760-40046779 | None:intergenic | 35.0% |
| CAAGAAAGGTAATCAATCTC+AGG | + | chr5_2:40046822-40046841 | None:intergenic | 35.0% | |
| CAATTTCATGTTCGCACAAA+AGG | + | chr5_2:40046878-40046897 | None:intergenic | 35.0% | |
| ! | AATGAGAGGTAGAGCTTTTA+AGG | - | chr5_2:40046967-40046986 | Msa0770080:intron | 35.0% |
| ! | ATGAGAGGTAGAGCTTTTAA+GGG | - | chr5_2:40046968-40046987 | Msa0770080:intron | 35.0% |
| CAAACGTAATGTTCATCTTC+GGG | - | chr5_2:40047065-40047084 | Msa0770080:CDS | 35.0% | |
| GGACAAATAATAGGATAGGT+AGG | + | chr5_2:40047120-40047139 | None:intergenic | 35.0% | |
| AGGAGGACAAATAATAGGAT+AGG | + | chr5_2:40047124-40047143 | None:intergenic | 35.0% | |
| ATTCATGTATTGGGAACTCA+GGG | + | chr5_2:40047187-40047206 | None:intergenic | 35.0% | |
| AATTCATGTATTGGGAACTC+AGG | + | chr5_2:40047188-40047207 | None:intergenic | 35.0% | |
| TCAGCGATTCAATTACTTTG+AGG | - | chr5_2:40047328-40047347 | Msa0770080:intron | 35.0% | |
| ! | TTCAATTACTTTGAGGACCT+AGG | - | chr5_2:40047335-40047354 | Msa0770080:intron | 35.0% |
| AATATCACAGATCGTCAATC+AGG | - | chr5_2:40047450-40047469 | Msa0770080:CDS | 35.0% | |
| !!! | TTAGGTTTTGTTTGGGAGTT+TGG | - | chr5_2:40047488-40047507 | Msa0770080:CDS | 35.0% |
| CCGAATTGCTCTATCAAATA+AGG | + | chr5_2:40047558-40047577 | None:intergenic | 35.0% | |
| !! | TAGAATAATTTTGGAGGGCT+TGG | + | chr5_2:40047667-40047686 | None:intergenic | 35.0% |
| ACAAAATTCCCCTAATTTGG+GGG | + | chr5_2:40047708-40047727 | None:intergenic | 35.0% | |
| AAGCAAATAGAAGGGAATGA+AGG | + | chr5_2:40047987-40048006 | None:intergenic | 35.0% | |
| !! | GTCATTAAGTTGATTTCTGG+TGG | - | chr5_2:40048022-40048041 | Msa0770080:intron | 35.0% |
| CAACATTGTAAATGGAAGTC+TGG | + | chr5_2:40048068-40048087 | None:intergenic | 35.0% | |
| CAGACTTCCATTTACAATGT+TGG | - | chr5_2:40048066-40048085 | Msa0770080:intron | 35.0% | |
| TGCAGAACCAACATTGTAAA+TGG | + | chr5_2:40048076-40048095 | None:intergenic | 35.0% | |
| !! | TACAATGTTGGTTCTGCAAA+AGG | - | chr5_2:40048078-40048097 | Msa0770080:intron | 35.0% |
| AAAAGGCTGTTAAGATGGTA+TGG | - | chr5_2:40048095-40048114 | Msa0770080:intron | 35.0% | |
| TTCATTCTGTCTGTTCTTGT+TGG | - | chr5_2:40048274-40048293 | Msa0770080:intron | 35.0% | |
| ! | TTGGATTCGTTGGTTACATA+CGG | - | chr5_2:40048293-40048312 | Msa0770080:intron | 35.0% |
| !! | TTGCTTTTATGCATGTATGC+AGG | - | chr5_2:40048354-40048373 | Msa0770080:intron | 35.0% |
| ! | TCCTCTCTGTAAGCTTATTT+TGG | - | chr5_2:40048377-40048396 | Msa0770080:intron | 35.0% |
| TCCAAAATAAGCTTACAGAG+AGG | + | chr5_2:40048381-40048400 | None:intergenic | 35.0% | |
| !!! | TCTGTAAGCTTATTTTGGAC+AGG | - | chr5_2:40048382-40048401 | Msa0770080:intron | 35.0% |
| !! | TCTTTTGGCAGCATTTGTTA+TGG | - | chr5_2:40048538-40048557 | Msa0770080:intron | 35.0% |
| CATTATTCACAGCTGCTATT+AGG | - | chr5_2:40048563-40048582 | Msa0770080:intron | 35.0% | |
| ! | TTTGATTCGTGTCAGATAAG+AGG | - | chr5_2:40048686-40048705 | Msa0770080:intron | 35.0% |
| ! | TGATTTCCTTTTCCATCTTG+TGG | - | chr5_2:40048754-40048773 | Msa0770080:intron | 35.0% |
| TAACAAGTATGCTTATGTCC+AGG | - | chr5_2:40048796-40048815 | Msa0770080:intron | 35.0% | |
| TGATTGTTGAGATGCACAAT+GGG | + | chr5_2:40048825-40048844 | None:intergenic | 35.0% | |
| TTGATTGTTGAGATGCACAA+TGG | + | chr5_2:40048826-40048845 | None:intergenic | 35.0% | |
| ! | GCTATTAGTTTACACTGTCT+TGG | - | chr5_2:40048883-40048902 | Msa0770080:intron | 35.0% |
| CCATAAACACCAATCTTCAA+GGG | + | chr5_2:40048954-40048973 | None:intergenic | 35.0% | |
| ACCATAAACACCAATCTTCA+AGG | + | chr5_2:40048955-40048974 | None:intergenic | 35.0% | |
| ! | CTGGGAGTTATTTCAATCAA+CGG | - | chr5_2:40049004-40049023 | Msa0770080:intron | 35.0% |
| ! | TGGGAGTTATTTCAATCAAC+GGG | - | chr5_2:40049005-40049024 | Msa0770080:intron | 35.0% |
| ! | CTGTTAATGGGAACCATTTT+AGG | - | chr5_2:40049068-40049087 | Msa0770080:intron | 35.0% |
| ! | TTAATGGGAACCATTTTAGG+TGG | - | chr5_2:40049071-40049090 | Msa0770080:intron | 35.0% |
| !! | TAATGGGAACCATTTTAGGT+GGG | - | chr5_2:40049072-40049091 | Msa0770080:intron | 35.0% |
| ACCTATTGTAGAAAAGATGG+TGG | - | chr5_2:40049261-40049280 | Msa0770080:CDS | 35.0% | |
| ! | TCCACCATCTTTTCTACAAT+AGG | + | chr5_2:40049265-40049284 | None:intergenic | 35.0% |
| GTTCATTTCCATCACATCTT+AGG | - | chr5_2:40049473-40049492 | Msa0770080:CDS | 35.0% | |
| ! | GGCATGACATGTGAATTTTT+AGG | - | chr5_2:40049594-40049613 | Msa0770080:intron | 35.0% |
| !!! | TGTGAATTTTTAGGTTGGAG+CGG | - | chr5_2:40049603-40049622 | Msa0770080:intron | 35.0% |
| !! | ACCCATTATTGATTCAGAGA+TGG | - | chr5_2:40049680-40049699 | Msa0770080:CDS | 35.0% |
| CCCATCTCTGAATCAATAAT+GGG | + | chr5_2:40049684-40049703 | None:intergenic | 35.0% | |
| !! | CCCATTATTGATTCAGAGAT+GGG | - | chr5_2:40049681-40049700 | Msa0770080:CDS | 35.0% |
| TCCCATCTCTGAATCAATAA+TGG | + | chr5_2:40049685-40049704 | None:intergenic | 35.0% | |
| ! | TTTCTGGTATACGAGAATCA+AGG | + | chr5_2:40049798-40049817 | None:intergenic | 35.0% |
| AAGGGTTGACATATATATCG+TGG | + | chr5_2:40049880-40049899 | None:intergenic | 35.0% | |
| !! | GTAGTAGCTTTGAGCTATAT+TGG | - | chr5_2:40049992-40050011 | Msa0770080:five_prime_UTR | 35.0% |
| ATGCCAAATCATCACCACTT+AGG | - | chr5_2:40045663-40045682 | Msa0770080:three_prime_UTR | 40.0% | |
| ACTTAGTACCTGATTGTTGG+TGG | + | chr5_2:40045990-40046009 | None:intergenic | 40.0% | |
| CAACAACAACATCAGTGAAG+TGG | - | chr5_2:40046110-40046129 | Msa0770080:intron | 40.0% | |
| TGGTGAACATGGAGCAAAAA+AGG | - | chr5_2:40046130-40046149 | Msa0770080:intron | 40.0% | |
| !! | GGTTTTGTCCTTGTGATTCT+TGG | - | chr5_2:40046207-40046226 | Msa0770080:intron | 40.0% |
| TGTTAACGCCAAGAATCACA+AGG | + | chr5_2:40046218-40046237 | None:intergenic | 40.0% | |
| TTGTGATTCTTGGCGTTAAC+AGG | - | chr5_2:40046217-40046236 | Msa0770080:intron | 40.0% | |
| ACTGATCACAGCAAGATAAG+TGG | + | chr5_2:40046436-40046455 | None:intergenic | 40.0% | |
| !!! | CTTTTGAGACTGTTTGGAAG+AGG | + | chr5_2:40046754-40046773 | None:intergenic | 40.0% |
| ! | TGAGAGGTAGAGCTTTTAAG+GGG | - | chr5_2:40046969-40046988 | Msa0770080:intron | 40.0% |
| !!! | GTTTTGTTTGGGAGTTTGGA+GGG | - | chr5_2:40047492-40047511 | Msa0770080:CDS | 40.0% |
| !! | TTTTGTTTGGGAGTTTGGAG+GGG | - | chr5_2:40047493-40047512 | Msa0770080:CDS | 40.0% |
| CAAAATTCCCCTAATTTGGG+GGG | + | chr5_2:40047707-40047726 | None:intergenic | 40.0% | |
| !! | AAGTTGATTTCTGGTGGCTT+TGG | - | chr5_2:40048028-40048047 | Msa0770080:intron | 40.0% |
| TCTGCAAAAGGCTGTTAAGA+TGG | - | chr5_2:40048090-40048109 | Msa0770080:intron | 40.0% | |
| TTATGGCTGTCATGCTCTTA+TGG | - | chr5_2:40048152-40048171 | Msa0770080:intron | 40.0% | |
| TCTGTTCTTGTTGGATTCGT+TGG | - | chr5_2:40048283-40048302 | Msa0770080:intron | 40.0% | |
| ACAGTACATGTCATAGTGTC+TGG | - | chr5_2:40048421-40048440 | Msa0770080:intron | 40.0% | |
| CAGTACATGTCATAGTGTCT+GGG | - | chr5_2:40048422-40048441 | Msa0770080:intron | 40.0% | |
| GATTTCATTATGGAGTTGGC+CGG | + | chr5_2:40048496-40048515 | None:intergenic | 40.0% | |
| CATTCTTGCCTATCTTTGAC+CGG | + | chr5_2:40048715-40048734 | None:intergenic | 40.0% | |
| ! | CCCTTGAAGATTGGTGTTTA+TGG | - | chr5_2:40048951-40048970 | Msa0770080:intron | 40.0% |
| ! | CGTTGATTGAAATAACTCCC+AGG | + | chr5_2:40049006-40049025 | None:intergenic | 40.0% |
| AGTTATCAGCCCACCTAAAA+TGG | + | chr5_2:40049084-40049103 | None:intergenic | 40.0% | |
| !!! | ATTTTAGGTGGGCTGATAAC+TGG | - | chr5_2:40049083-40049102 | Msa0770080:intron | 40.0% |
| TGGATCTACATCTATGCTCA+TGG | - | chr5_2:40049160-40049179 | Msa0770080:CDS | 40.0% | |
| GGATCTACATCTATGCTCAT+GGG | - | chr5_2:40049161-40049180 | Msa0770080:CDS | 40.0% | |
| TATGCTCATGGGCATGATAT+TGG | - | chr5_2:40049172-40049191 | Msa0770080:CDS | 40.0% | |
| TAGATATTAGGACATCGGAG+AGG | + | chr5_2:40049406-40049425 | None:intergenic | 40.0% | |
| GTGTAAATGGAATTTGGGCT+GGG | + | chr5_2:40049441-40049460 | None:intergenic | 40.0% | |
| TGTGTAAATGGAATTTGGGC+TGG | + | chr5_2:40049442-40049461 | None:intergenic | 40.0% | |
| CCTGACATGTCATGTGTAAA+TGG | + | chr5_2:40049454-40049473 | None:intergenic | 40.0% | |
| CCATTTACACATGACATGTC+AGG | - | chr5_2:40049451-40049470 | Msa0770080:CDS | 40.0% | |
| CTGAATATGCATCCGAACAT+AGG | - | chr5_2:40049573-40049592 | Msa0770080:intron | 40.0% | |
| TCACATGTCATGCCTATGTT+CGG | + | chr5_2:40049588-40049607 | None:intergenic | 40.0% | |
| ! | CCTCAAATTTAGGCGTTTTC+TGG | + | chr5_2:40049814-40049833 | None:intergenic | 40.0% |
| CCAGAAAACGCCTAAATTTG+AGG | - | chr5_2:40049811-40049830 | Msa0770080:five_prime_UTR | 40.0% | |
| GATGACAACACAACCCAAGA+TGG | - | chr5_2:40045596-40045615 | Msa0770080:three_prime_UTR | 45.0% | |
| GCATGGCAACGTTACAATCA+TGG | - | chr5_2:40045620-40045639 | Msa0770080:three_prime_UTR | 45.0% | |
| AGCAGAGAGAGATTCCTAAG+TGG | + | chr5_2:40045680-40045699 | None:intergenic | 45.0% | |
| GAGAGAGAGAGAGATGAAGT+AGG | + | chr5_2:40045877-40045896 | None:intergenic | 45.0% | |
| CATCAGTGAAGTGGTGAACA+TGG | - | chr5_2:40046119-40046138 | Msa0770080:intron | 45.0% | |
| ! | ACATGGAGCAAAAAAGGCGT+TGG | - | chr5_2:40046136-40046155 | Msa0770080:intron | 45.0% |
| !! | TAAGTACACGTACCGGTTCA+TGG | - | chr5_2:40046269-40046288 | Msa0770080:intron | 45.0% |
| ! | CTGGTTTGACAGAGGATTAC+TGG | - | chr5_2:40046301-40046320 | Msa0770080:intron | 45.0% |
| ! | ATGGAGTTGGTTGTTGCTGT+TGG | - | chr5_2:40046365-40046384 | Msa0770080:intron | 45.0% |
| ! | TGGAGTTGGTTGTTGCTGTT+GGG | - | chr5_2:40046366-40046385 | Msa0770080:intron | 45.0% |
| AAGCAACACCCCAGAAAAAC+TGG | + | chr5_2:40046479-40046498 | None:intergenic | 45.0% | |
| !!! | TGGGGTGTTGCTTTTGCTAT+TGG | - | chr5_2:40046486-40046505 | Msa0770080:CDS | 45.0% |
| TGAGACTGTTTGGAAGAGGT+TGG | + | chr5_2:40046750-40046769 | None:intergenic | 45.0% | |
| CAGATCGTCAATCAGGTCTA+TGG | - | chr5_2:40047457-40047476 | Msa0770080:CDS | 45.0% | |
| !!! | GGTTTTGTTTGGGAGTTTGG+AGG | - | chr5_2:40047491-40047510 | Msa0770080:CDS | 45.0% |
| TTTGTTTGGGAGTTTGGAGG+GGG | - | chr5_2:40047494-40047513 | Msa0770080:CDS | 45.0% | |
| ! | ATTTGGAGTCCCCCCAAATT+AGG | - | chr5_2:40047695-40047714 | Msa0770080:intron | 45.0% |
| ! | TTTGGAGTCCCCCCAAATTA+GGG | - | chr5_2:40047696-40047715 | Msa0770080:intron | 45.0% |
| AAAGAGAAGGAGGAAGTGGA+AGG | + | chr5_2:40047768-40047787 | None:intergenic | 45.0% | |
| !! | GATGGCTTTGGGAAAAGAGA+AGG | + | chr5_2:40047781-40047800 | None:intergenic | 45.0% |
| GAGACAGTTAGGGTCTGTTT+GGG | + | chr5_2:40047816-40047835 | None:intergenic | 45.0% | |
| AGAGACAGTTAGGGTCTGTT+TGG | + | chr5_2:40047817-40047836 | None:intergenic | 45.0% | |
| CCATGGAACAGAGACAGTTA+GGG | + | chr5_2:40047826-40047845 | None:intergenic | 45.0% | |
| TCCATGGAACAGAGACAGTT+AGG | + | chr5_2:40047827-40047846 | None:intergenic | 45.0% | |
| !! | GCTGTTTCTATGCATCTCCA+TGG | + | chr5_2:40047843-40047862 | None:intergenic | 45.0% |
| GATGGTATGGAATCTTCCAG+AGG | - | chr5_2:40048108-40048127 | Msa0770080:intron | 45.0% | |
| TATGCGACTCTCATAACCTC+TGG | + | chr5_2:40048127-40048146 | None:intergenic | 45.0% | |
| GAGAGTCGCATATGCGTTTA+TGG | - | chr5_2:40048135-40048154 | Msa0770080:intron | 45.0% | |
| TGCTCTTATGGATGGCATTG+TGG | - | chr5_2:40048164-40048183 | Msa0770080:intron | 45.0% | |
| TGGATGGCATTGTGGTCATT+TGG | - | chr5_2:40048172-40048191 | Msa0770080:intron | 45.0% | |
| ! | CTGGTTCGTGTTAGTATCCA+TGG | - | chr5_2:40048448-40048467 | Msa0770080:intron | 45.0% |
| GTTCGTGTTAGTATCCATGG+TGG | - | chr5_2:40048451-40048470 | Msa0770080:intron | 45.0% | |
| TGCTATTAGGACACTGCGAT+GGG | - | chr5_2:40048576-40048595 | Msa0770080:intron | 45.0% | |
| CGTGTCAGATAAGAGGAATC+CGG | - | chr5_2:40048693-40048712 | Msa0770080:intron | 45.0% | |
| AGAGGAATCCGGTCAAAGAT+AGG | - | chr5_2:40048704-40048723 | Msa0770080:intron | 45.0% | |
| GAGTCTCCACAAGATGGAAA+AGG | + | chr5_2:40048763-40048782 | None:intergenic | 45.0% | |
| TGACAAGAGTCTCCACAAGA+TGG | + | chr5_2:40048769-40048788 | None:intergenic | 45.0% | |
| ATCTTGTGGAGACTCTTGTC+AGG | - | chr5_2:40048768-40048787 | Msa0770080:intron | 45.0% | |
| CACCAATCTTCAAGGGACAT+GGG | + | chr5_2:40048947-40048966 | None:intergenic | 45.0% | |
| ACACCAATCTTCAAGGGACA+TGG | + | chr5_2:40048948-40048967 | None:intergenic | 45.0% | |
| CTTGTGGCGTATGATTGTTC+AGG | - | chr5_2:40049038-40049057 | Msa0770080:intron | 45.0% | |
| ! | TTCAGGTGCTGTGCTGTTAA+TGG | - | chr5_2:40049055-40049074 | Msa0770080:intron | 45.0% |
| ! | TCAGGTGCTGTGCTGTTAAT+GGG | - | chr5_2:40049056-40049075 | Msa0770080:intron | 45.0% |
| ! | CTGATAACTGGAACTTGCTC+TGG | - | chr5_2:40049095-40049114 | Msa0770080:intron | 45.0% |
| ! | TGGAACTTGCTCTGGTGTTT+GGG | - | chr5_2:40049103-40049122 | Msa0770080:intron | 45.0% |
| GTGTTTGGGCATGGATGAAA+TGG | - | chr5_2:40049117-40049136 | Msa0770080:CDS | 45.0% | |
| GACATGCACCTAAGATGTGA+TGG | + | chr5_2:40049484-40049503 | None:intergenic | 45.0% | |
| GCATATTCAGCAATGCGAGT+TGG | + | chr5_2:40049563-40049582 | None:intergenic | 45.0% | |
| !!! | TTTTTAGGTTGGAGCGGCAA+TGG | - | chr5_2:40049609-40049628 | Msa0770080:intron | 45.0% |
| GGTGCAATGTTTCGGAAATC+TGG | + | chr5_2:40049723-40049742 | None:intergenic | 45.0% | |
| AAGTCGCTGGTGCAATGTTT+CGG | + | chr5_2:40049731-40049750 | None:intergenic | 45.0% | |
| ACGAGAATCAAGGTGATCGT+GGG | + | chr5_2:40049788-40049807 | None:intergenic | 45.0% | |
| TACGAGAATCAAGGTGATCG+TGG | + | chr5_2:40049789-40049808 | None:intergenic | 45.0% | |
| AACGTTACAATCATGGCGCG+TGG | - | chr5_2:40045627-40045646 | Msa0770080:three_prime_UTR | 50.0% | |
| GGCAGTGGAAGAATCCATGA+TGG | + | chr5_2:40045969-40045988 | None:intergenic | 50.0% | |
| TTCCACTGCCACCAACAATC+AGG | - | chr5_2:40045979-40045998 | Msa0770080:CDS | 50.0% | |
| !! | TACCTGATTGTTGGTGGCAG+TGG | + | chr5_2:40045984-40046003 | None:intergenic | 50.0% |
| TGTGATCCAGTTGATTGGCG+TGG | - | chr5_2:40046185-40046204 | Msa0770080:intron | 50.0% | |
| GTGATCCAGTTGATTGGCGT+GGG | - | chr5_2:40046186-40046205 | Msa0770080:intron | 50.0% | |
| CAAAACCCACGCCAATCAAC+TGG | + | chr5_2:40046194-40046213 | None:intergenic | 50.0% | |
| !! | GTACCGGTTCATGGAGAATG+AGG | - | chr5_2:40046278-40046297 | Msa0770080:intron | 50.0% |
| CAGCCTCATTCTCCATGAAC+CGG | + | chr5_2:40046284-40046303 | None:intergenic | 50.0% | |
| !! | GAATGAGGCTGGTTTGACAG+AGG | - | chr5_2:40046293-40046312 | Msa0770080:intron | 50.0% |
| GGACAGACACCTTCATCATC+TGG | + | chr5_2:40046404-40046423 | None:intergenic | 50.0% | |
| ! | TCTGGGCTCACCAGTTTTTC+TGG | - | chr5_2:40046466-40046485 | Msa0770080:CDS | 50.0% |
| ! | CTGGGCTCACCAGTTTTTCT+GGG | - | chr5_2:40046467-40046486 | Msa0770080:CDS | 50.0% |
| ! | TGGGCTCACCAGTTTTTCTG+GGG | - | chr5_2:40046468-40046487 | Msa0770080:CDS | 50.0% |
| TTGGAGTCCCCCCAAATTAG+GGG | - | chr5_2:40047697-40047716 | Msa0770080:intron | 50.0% | |
| TGGAAGGAAAGGAGGGCTTT+GGG | + | chr5_2:40047752-40047771 | None:intergenic | 50.0% | |
| GAGGAAGTGGAAGGAAAGGA+GGG | + | chr5_2:40047759-40047778 | None:intergenic | 50.0% | |
| GAAGGAGGAAGTGGAAGGAA+AGG | + | chr5_2:40047763-40047782 | None:intergenic | 50.0% | |
| GGGAAAAGAGAAGGAGGAAG+TGG | + | chr5_2:40047772-40047791 | None:intergenic | 50.0% | |
| !! | GGCTTTGGGAAAAGAGAAGG+AGG | + | chr5_2:40047778-40047797 | None:intergenic | 50.0% |
| TCTGTTTGGGAGTTCAGGAG+GGG | + | chr5_2:40047803-40047822 | None:intergenic | 50.0% | |
| GTCTGTTTGGGAGTTCAGGA+GGG | + | chr5_2:40047804-40047823 | None:intergenic | 50.0% | |
| TAGGGTCTGTTTGGGAGTTC+AGG | + | chr5_2:40047808-40047827 | None:intergenic | 50.0% | |
| CCCTAACTGTCTCTGTTCCA+TGG | - | chr5_2:40047823-40047842 | Msa0770080:intron | 50.0% | |
| GGCTGTCATGCTCTTATGGA+TGG | - | chr5_2:40048156-40048175 | Msa0770080:intron | 50.0% | |
| ! | TTGTGGTCATTTGGAGCTGC+TGG | - | chr5_2:40048181-40048200 | Msa0770080:intron | 50.0% |
| !! | TGGTGTCGTAGCTTCAAGCA+TGG | - | chr5_2:40048201-40048220 | Msa0770080:intron | 50.0% |
| ! | GGTGTCGTAGCTTCAAGCAT+GGG | - | chr5_2:40048202-40048221 | Msa0770080:intron | 50.0% |
| GTAGCTTCAAGCATGGGTGA+CGG | - | chr5_2:40048208-40048227 | Msa0770080:intron | 50.0% | |
| TGTCATAGTGTCTGGGTCAC+TGG | - | chr5_2:40048429-40048448 | Msa0770080:intron | 50.0% | |
| TAGTATCCATGGTGGTTGCG+AGG | - | chr5_2:40048459-40048478 | Msa0770080:intron | 50.0% | |
| CTGCTATTAGGACACTGCGA+TGG | - | chr5_2:40048575-40048594 | Msa0770080:intron | 50.0% | |
| TATTAGGACACTGCGATGGG+AGG | - | chr5_2:40048579-40048598 | Msa0770080:intron | 50.0% | |
| CTCCCATGTCCCTTGAAGAT+TGG | - | chr5_2:40048942-40048961 | Msa0770080:intron | 50.0% | |
| ! | AACGGGAGTTGAAGCACTTG+TGG | - | chr5_2:40049022-40049041 | Msa0770080:intron | 50.0% |
| ! | CTGGAACTTGCTCTGGTGTT+TGG | - | chr5_2:40049102-40049121 | Msa0770080:intron | 50.0% |
| TGCACCAGCGACTTCAACAT+AGG | - | chr5_2:40049737-40049756 | Msa0770080:intron | 50.0% | |
| AGCTCCTATGTTGAAGTCGC+TGG | + | chr5_2:40049744-40049763 | None:intergenic | 50.0% | |
| ACACAACCCAAGATGGCGCA+TGG | - | chr5_2:40045603-40045622 | Msa0770080:three_prime_UTR | 55.0% | |
| ACGTTGCCATGCGCCATCTT+GGG | + | chr5_2:40045612-40045631 | None:intergenic | 55.0% | |
| AACGTTGCCATGCGCCATCT+TGG | + | chr5_2:40045613-40045632 | None:intergenic | 55.0% | |
| !! | GGCGTTGGCACGATGTATTC+TGG | - | chr5_2:40046151-40046170 | Msa0770080:intron | 55.0% |
| CGGTTCATGGAGAATGAGGC+TGG | - | chr5_2:40046282-40046301 | Msa0770080:intron | 55.0% | |
| TGGCCACTCTATGCTGTTGC+TGG | - | chr5_2:40046321-40046340 | Msa0770080:intron | 55.0% | |
| CCACTCTATGCTGTTGCTGG+CGG | - | chr5_2:40046324-40046343 | Msa0770080:intron | 55.0% | |
| GGACTGCTCTTGGATGGAGT+TGG | - | chr5_2:40046352-40046371 | Msa0770080:intron | 55.0% | |
| GCGCGCAATCCAGATGATGA+AGG | - | chr5_2:40046392-40046411 | Msa0770080:intron | 55.0% | |
| ! | AGGGGGTGGACTTTGTTGAG+AGG | - | chr5_2:40047511-40047530 | Msa0770080:CDS | 55.0% |
| ! | GGGGGTGGACTTTGTTGAGA+GGG | - | chr5_2:40047512-40047531 | Msa0770080:CDS | 55.0% |
| GGAAGGAAAGGAGGGCTTTG+GGG | + | chr5_2:40047751-40047770 | None:intergenic | 55.0% | |
| GTGGAAGGAAAGGAGGGCTT+TGG | + | chr5_2:40047753-40047772 | None:intergenic | 55.0% | |
| GGAGGAAGTGGAAGGAAAGG+AGG | + | chr5_2:40047760-40047779 | None:intergenic | 55.0% | |
| GTTCAGGAGGGGATGGCTTT+GGG | + | chr5_2:40047792-40047811 | None:intergenic | 55.0% | |
| AGTTCAGGAGGGGATGGCTT+TGG | + | chr5_2:40047793-40047812 | None:intergenic | 55.0% | |
| TTTGGGAGTTCAGGAGGGGA+TGG | + | chr5_2:40047799-40047818 | None:intergenic | 55.0% | |
| GGTCTGTTTGGGAGTTCAGG+AGG | + | chr5_2:40047805-40047824 | None:intergenic | 55.0% | |
| !! | TGGACGTTGGTGGCTTCTTG+TGG | - | chr5_2:40048231-40048250 | Msa0770080:intron | 55.0% |
| TTGCGAGGCTGCATCAGTTC+CGG | - | chr5_2:40048474-40048493 | Msa0770080:intron | 55.0% | |
| !! | GAGATGCACAATGGGCTACC+TGG | + | chr5_2:40048817-40048836 | None:intergenic | 55.0% |
| ACCGTTCTGCTAGAGATGCC+TGG | - | chr5_2:40048985-40049004 | Msa0770080:intron | 55.0% | |
| CCCAGGCATCTCTAGCAGAA+CGG | + | chr5_2:40048989-40049008 | None:intergenic | 55.0% | |
| CCGTTCTGCTAGAGATGCCT+GGG | - | chr5_2:40048986-40049005 | Msa0770080:intron | 55.0% | |
| CTTGCTCTGGTGTTTGGGCA+TGG | - | chr5_2:40049108-40049127 | Msa0770080:CDS | 55.0% | |
| AACATAGGAGCTCGCGTGCA+AGG | - | chr5_2:40049752-40049771 | Msa0770080:intron | 55.0% | |
| ACATAGGAGCTCGCGTGCAA+GGG | - | chr5_2:40049753-40049772 | Msa0770080:intron | 55.0% | |
| CCGCCAGCAACAGCATAGAG+TGG | + | chr5_2:40046327-40046346 | None:intergenic | 60.0% | |
| TATGCTGTTGCTGGCGGCGT+TGG | - | chr5_2:40046330-40046349 | Msa0770080:intron | 60.0% | |
| ATGCTGTTGCTGGCGGCGTT+GGG | - | chr5_2:40046331-40046350 | Msa0770080:intron | 60.0% | |
| GCGTTGGGACTGCTCTTGGA+TGG | - | chr5_2:40046346-40046365 | Msa0770080:intron | 60.0% | |
| GTTTGGGAGTTTGGAGGGGG+TGG | - | chr5_2:40047497-40047516 | Msa0770080:CDS | 60.0% | |
| ! | GCTTCAAGCATGGGTGACGG+TGG | - | chr5_2:40048211-40048230 | Msa0770080:intron | 60.0% |
| GGTGGCTTCTTGTGGTGAGC+TGG | - | chr5_2:40048239-40048258 | Msa0770080:intron | 60.0% | |
| ATGCAGCCTCGCAACCACCA+TGG | + | chr5_2:40048468-40048487 | None:intergenic | 60.0% | |
| GGTTGGAGCGGCAATGGTTG+TGG | - | chr5_2:40049615-40049634 | Msa0770080:intron | 60.0% | |
| TGGAGCGGCAATGGTTGTGG+TGG | - | chr5_2:40049618-40049637 | Msa0770080:intron | 60.0% | |
| ! | GCATGGGTGACGGTGGACGT+TGG | - | chr5_2:40048218-40048237 | Msa0770080:intron | 65.0% |
| ! | TGGGTGACGGTGGACGTTGG+TGG | - | chr5_2:40048221-40048240 | Msa0770080:intron | 65.0% |
| ! | GGCGGCGTTGGGACTGCTCT+TGG | - | chr5_2:40046342-40046361 | Msa0770080:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 40045564 | 40050092 | 40045564 | ID=Msa0770080;Name=Msa0770080 |
| chr5_2 | mRNA | 40045564 | 40050092 | 40045564 | ID=Msa0770080-mRNA-1;Parent=Msa0770080;Name=Msa0770080-mRNA-1;_AED=0.05;_eAED=0.05;_QI=358|1|1|1|0.85|0.75|8|267|491 |
| chr5_2 | exon | 40045564 | 40046040 | 40045564 | ID=Msa0770080-mRNA-1:exon:12811;Parent=Msa0770080-mRNA-1 |
| chr5_2 | exon | 40046463 | 40046696 | 40046463 | ID=Msa0770080-mRNA-1:exon:12810;Parent=Msa0770080-mRNA-1 |
| chr5_2 | exon | 40046839 | 40046955 | 40046839 | ID=Msa0770080-mRNA-1:exon:12809;Parent=Msa0770080-mRNA-1 |
| chr5_2 | exon | 40047056 | 40047280 | 40047056 | ID=Msa0770080-mRNA-1:exon:12808;Parent=Msa0770080-mRNA-1 |
| chr5_2 | exon | 40047404 | 40047587 | 40047404 | ID=Msa0770080-mRNA-1:exon:12807;Parent=Msa0770080-mRNA-1 |
| chr5_2 | exon | 40049106 | 40049566 | 40049106 | ID=Msa0770080-mRNA-1:exon:12806;Parent=Msa0770080-mRNA-1 |
| chr5_2 | exon | 40049656 | 40049730 | 40049656 | ID=Msa0770080-mRNA-1:exon:12805;Parent=Msa0770080-mRNA-1 |
| chr5_2 | exon | 40049765 | 40050092 | 40049765 | ID=Msa0770080-mRNA-1:exon:12804;Parent=Msa0770080-mRNA-1 |
| chr5_2 | five_prime_UTR | 40049765 | 40050092 | 40049765 | ID=Msa0770080-mRNA-1:five_prime_utr;Parent=Msa0770080-mRNA-1 |
| chr5_2 | five_prime_UTR | 40049701 | 40049730 | 40049701 | ID=Msa0770080-mRNA-1:five_prime_utr;Parent=Msa0770080-mRNA-1 |
| chr5_2 | CDS | 40049656 | 40049700 | 40049656 | ID=Msa0770080-mRNA-1:cds;Parent=Msa0770080-mRNA-1 |
| chr5_2 | CDS | 40049106 | 40049566 | 40049106 | ID=Msa0770080-mRNA-1:cds;Parent=Msa0770080-mRNA-1 |
| chr5_2 | CDS | 40047404 | 40047587 | 40047404 | ID=Msa0770080-mRNA-1:cds;Parent=Msa0770080-mRNA-1 |
| chr5_2 | CDS | 40047056 | 40047280 | 40047056 | ID=Msa0770080-mRNA-1:cds;Parent=Msa0770080-mRNA-1 |
| chr5_2 | CDS | 40046839 | 40046955 | 40046839 | ID=Msa0770080-mRNA-1:cds;Parent=Msa0770080-mRNA-1 |
| chr5_2 | CDS | 40046463 | 40046696 | 40046463 | ID=Msa0770080-mRNA-1:cds;Parent=Msa0770080-mRNA-1 |
| chr5_2 | CDS | 40045831 | 40046040 | 40045831 | ID=Msa0770080-mRNA-1:cds;Parent=Msa0770080-mRNA-1 |
| chr5_2 | three_prime_UTR | 40045564 | 40045830 | 40045564 | ID=Msa0770080-mRNA-1:three_prime_utr;Parent=Msa0770080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
